Multiple sequence alignment - TraesCS2D01G240500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G240500 chr2D 100.000 2552 0 0 1 2552 259221509 259224060 0.000000e+00 4713.0
1 TraesCS2D01G240500 chr2D 91.594 690 38 7 116 790 266815984 266815300 0.000000e+00 935.0
2 TraesCS2D01G240500 chr2D 94.764 191 9 1 786 976 266815113 266814924 1.920000e-76 296.0
3 TraesCS2D01G240500 chr2D 97.059 102 3 0 1 102 250659658 250659557 3.380000e-39 172.0
4 TraesCS2D01G240500 chr2D 80.597 201 35 4 218 416 593503207 593503405 4.400000e-33 152.0
5 TraesCS2D01G240500 chr4B 91.414 792 59 6 1759 2547 114576521 114575736 0.000000e+00 1077.0
6 TraesCS2D01G240500 chr4B 85.976 492 49 9 940 1427 114584051 114583576 2.270000e-140 508.0
7 TraesCS2D01G240500 chr4B 88.102 353 23 5 1426 1774 114578226 114577889 3.950000e-108 401.0
8 TraesCS2D01G240500 chr4B 78.866 388 53 17 421 790 114584918 114584542 4.240000e-58 235.0
9 TraesCS2D01G240500 chr4B 85.802 162 22 1 221 381 446769111 446769272 1.210000e-38 171.0
10 TraesCS2D01G240500 chr4B 83.929 168 21 5 221 385 606916924 606916760 3.400000e-34 156.0
11 TraesCS2D01G240500 chr4B 83.178 107 15 2 116 220 114585051 114584946 7.520000e-16 95.3
12 TraesCS2D01G240500 chr3D 92.719 673 43 3 1876 2547 272488056 272487389 0.000000e+00 966.0
13 TraesCS2D01G240500 chr3D 97.059 102 3 0 1 102 138452268 138452369 3.380000e-39 172.0
14 TraesCS2D01G240500 chr5D 98.039 102 1 1 1 102 123811346 123811246 2.610000e-40 176.0
15 TraesCS2D01G240500 chr5D 81.347 193 30 6 212 400 230417000 230416810 4.400000e-33 152.0
16 TraesCS2D01G240500 chr7D 97.059 102 3 0 1 102 265231551 265231652 3.380000e-39 172.0
17 TraesCS2D01G240500 chr7D 97.059 102 3 0 1 102 517255297 517255398 3.380000e-39 172.0
18 TraesCS2D01G240500 chr6B 97.059 102 3 0 1 102 601909373 601909474 3.380000e-39 172.0
19 TraesCS2D01G240500 chr6B 84.663 163 24 1 220 381 128931886 128931724 7.310000e-36 161.0
20 TraesCS2D01G240500 chr5A 97.059 102 3 0 1 102 579446713 579446814 3.380000e-39 172.0
21 TraesCS2D01G240500 chr1D 97.059 102 3 0 1 102 356982840 356982941 3.380000e-39 172.0
22 TraesCS2D01G240500 chr1B 97.059 102 3 0 1 102 481330764 481330663 3.380000e-39 172.0
23 TraesCS2D01G240500 chr7B 83.523 176 27 2 208 381 461739309 461739484 2.030000e-36 163.0
24 TraesCS2D01G240500 chr4D 84.524 168 20 5 221 385 479687421 479687257 7.310000e-36 161.0
25 TraesCS2D01G240500 chr4D 83.333 168 27 1 220 386 23422599 23422432 1.220000e-33 154.0
26 TraesCS2D01G240500 chr5B 95.000 40 2 0 800 839 428851979 428851940 2.120000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G240500 chr2D 259221509 259224060 2551 False 4713.000000 4713 100.000000 1 2552 1 chr2D.!!$F1 2551
1 TraesCS2D01G240500 chr2D 266814924 266815984 1060 True 615.500000 935 93.179000 116 976 2 chr2D.!!$R2 860
2 TraesCS2D01G240500 chr4B 114575736 114578226 2490 True 739.000000 1077 89.758000 1426 2547 2 chr4B.!!$R2 1121
3 TraesCS2D01G240500 chr4B 114583576 114585051 1475 True 279.433333 508 82.673333 116 1427 3 chr4B.!!$R3 1311
4 TraesCS2D01G240500 chr3D 272487389 272488056 667 True 966.000000 966 92.719000 1876 2547 1 chr3D.!!$R1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1369 0.395862 TAGAGAGTTGCGGAGAGGGG 60.396 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 3584 0.040958 GCAAGAGGAACACAACTGCG 60.041 55.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.841295 AAAATATAGCTCCAAGTAAAATACCGA 57.159 29.630 0.00 0.00 0.00 4.69
31 32 9.436957 AATATAGCTCCAAGTAAAATACCGATG 57.563 33.333 0.00 0.00 0.00 3.84
32 33 4.451900 AGCTCCAAGTAAAATACCGATGG 58.548 43.478 0.00 0.00 0.00 3.51
33 34 4.080526 AGCTCCAAGTAAAATACCGATGGT 60.081 41.667 0.00 0.00 40.16 3.55
34 35 4.272748 GCTCCAAGTAAAATACCGATGGTC 59.727 45.833 0.00 0.00 37.09 4.02
35 36 4.435425 TCCAAGTAAAATACCGATGGTCG 58.565 43.478 0.00 0.00 37.09 4.79
36 37 4.081531 TCCAAGTAAAATACCGATGGTCGT 60.082 41.667 0.00 0.00 38.40 4.34
37 38 4.269363 CCAAGTAAAATACCGATGGTCGTC 59.731 45.833 0.00 0.00 38.40 4.20
38 39 4.724074 AGTAAAATACCGATGGTCGTCA 57.276 40.909 0.00 0.00 38.40 4.35
39 40 4.679662 AGTAAAATACCGATGGTCGTCAG 58.320 43.478 0.00 0.00 38.40 3.51
40 41 3.880047 AAAATACCGATGGTCGTCAGA 57.120 42.857 0.00 0.00 38.40 3.27
41 42 3.880047 AAATACCGATGGTCGTCAGAA 57.120 42.857 0.00 0.00 38.40 3.02
42 43 3.438297 AATACCGATGGTCGTCAGAAG 57.562 47.619 0.00 0.00 38.40 2.85
43 44 2.118313 TACCGATGGTCGTCAGAAGA 57.882 50.000 0.00 0.00 38.40 2.87
44 45 1.254026 ACCGATGGTCGTCAGAAGAA 58.746 50.000 0.00 0.00 38.40 2.52
45 46 1.616865 ACCGATGGTCGTCAGAAGAAA 59.383 47.619 0.00 0.00 38.40 2.52
46 47 2.233922 ACCGATGGTCGTCAGAAGAAAT 59.766 45.455 0.00 0.00 38.40 2.17
47 48 3.446161 ACCGATGGTCGTCAGAAGAAATA 59.554 43.478 0.00 0.00 38.40 1.40
48 49 4.045104 CCGATGGTCGTCAGAAGAAATAG 58.955 47.826 0.00 0.00 38.40 1.73
49 50 4.045104 CGATGGTCGTCAGAAGAAATAGG 58.955 47.826 0.00 0.00 34.72 2.57
50 51 3.887621 TGGTCGTCAGAAGAAATAGGG 57.112 47.619 0.00 0.00 0.00 3.53
51 52 2.500098 TGGTCGTCAGAAGAAATAGGGG 59.500 50.000 0.00 0.00 0.00 4.79
52 53 2.764572 GGTCGTCAGAAGAAATAGGGGA 59.235 50.000 0.00 0.00 0.00 4.81
53 54 3.388350 GGTCGTCAGAAGAAATAGGGGAT 59.612 47.826 0.00 0.00 0.00 3.85
54 55 4.372656 GTCGTCAGAAGAAATAGGGGATG 58.627 47.826 0.00 0.00 0.00 3.51
55 56 3.134458 CGTCAGAAGAAATAGGGGATGC 58.866 50.000 0.00 0.00 0.00 3.91
56 57 3.481453 GTCAGAAGAAATAGGGGATGCC 58.519 50.000 0.00 0.00 0.00 4.40
57 58 3.117888 GTCAGAAGAAATAGGGGATGCCA 60.118 47.826 5.30 0.00 0.00 4.92
58 59 3.117888 TCAGAAGAAATAGGGGATGCCAC 60.118 47.826 5.30 0.00 0.00 5.01
59 60 3.117738 CAGAAGAAATAGGGGATGCCACT 60.118 47.826 5.30 2.35 41.86 4.00
60 61 3.137360 AGAAGAAATAGGGGATGCCACTC 59.863 47.826 5.30 0.00 36.28 3.51
61 62 1.417890 AGAAATAGGGGATGCCACTCG 59.582 52.381 5.30 0.00 36.28 4.18
62 63 0.474184 AAATAGGGGATGCCACTCGG 59.526 55.000 5.30 0.00 36.28 4.63
63 64 1.418908 AATAGGGGATGCCACTCGGG 61.419 60.000 5.30 0.00 36.28 5.14
81 82 2.896745 GGCATCCCCAAGCTTAATTG 57.103 50.000 0.00 0.00 0.00 2.32
82 83 1.202568 GGCATCCCCAAGCTTAATTGC 60.203 52.381 0.00 4.64 0.00 3.56
83 84 1.758862 GCATCCCCAAGCTTAATTGCT 59.241 47.619 0.00 0.00 46.40 3.91
94 95 5.718724 AGCTTAATTGCTTGCTTCTCTTT 57.281 34.783 0.00 0.00 40.93 2.52
95 96 6.094193 AGCTTAATTGCTTGCTTCTCTTTT 57.906 33.333 0.00 0.00 40.93 2.27
96 97 7.219484 AGCTTAATTGCTTGCTTCTCTTTTA 57.781 32.000 0.00 0.00 40.93 1.52
97 98 7.311408 AGCTTAATTGCTTGCTTCTCTTTTAG 58.689 34.615 0.00 0.00 40.93 1.85
98 99 7.175641 AGCTTAATTGCTTGCTTCTCTTTTAGA 59.824 33.333 0.00 0.00 40.93 2.10
99 100 7.972832 GCTTAATTGCTTGCTTCTCTTTTAGAT 59.027 33.333 0.00 0.00 33.05 1.98
103 104 7.986085 TTGCTTGCTTCTCTTTTAGATAACT 57.014 32.000 0.00 0.00 33.05 2.24
104 105 7.369803 TGCTTGCTTCTCTTTTAGATAACTG 57.630 36.000 0.00 0.00 33.05 3.16
105 106 7.161404 TGCTTGCTTCTCTTTTAGATAACTGA 58.839 34.615 0.00 0.00 33.05 3.41
106 107 7.826252 TGCTTGCTTCTCTTTTAGATAACTGAT 59.174 33.333 0.00 0.00 33.05 2.90
107 108 8.334632 GCTTGCTTCTCTTTTAGATAACTGATC 58.665 37.037 0.00 0.00 33.05 2.92
108 109 9.376075 CTTGCTTCTCTTTTAGATAACTGATCA 57.624 33.333 0.00 0.00 36.98 2.92
109 110 9.896645 TTGCTTCTCTTTTAGATAACTGATCAT 57.103 29.630 0.00 0.00 36.98 2.45
110 111 9.539825 TGCTTCTCTTTTAGATAACTGATCATC 57.460 33.333 0.00 0.00 36.98 2.92
111 112 9.539825 GCTTCTCTTTTAGATAACTGATCATCA 57.460 33.333 0.00 0.00 36.98 3.07
114 115 9.823647 TCTCTTTTAGATAACTGATCATCAACC 57.176 33.333 0.00 0.00 36.98 3.77
469 474 4.642437 TGTCTACTGAGATCTAAGCACCTG 59.358 45.833 7.04 0.00 33.14 4.00
487 492 3.181478 ACCTGCGTTAGTAGTCTAATGGC 60.181 47.826 8.59 7.68 41.12 4.40
516 521 1.138266 TGGTAAGAGCCATTAGTCGCC 59.862 52.381 0.00 0.00 32.81 5.54
537 542 5.220605 CGCCTAGCAGAATACCACTTTTAAC 60.221 44.000 0.00 0.00 0.00 2.01
615 636 6.368779 TCTATTTAGGTAGCACAAAGGTGT 57.631 37.500 0.00 0.00 46.95 4.16
640 662 8.529911 GTCTCCGTTGATATTAAACTTCGTAAG 58.470 37.037 2.03 0.00 0.00 2.34
794 1010 1.448985 TTACGGCCAACATCTTCTGC 58.551 50.000 2.24 0.00 0.00 4.26
845 1061 7.235080 GCTTTACTTCTAACTTTGACGATTCC 58.765 38.462 0.00 0.00 0.00 3.01
846 1062 7.117956 GCTTTACTTCTAACTTTGACGATTCCT 59.882 37.037 0.00 0.00 0.00 3.36
887 1225 5.174035 CGTATCGACTCATGGTCTTCAAATC 59.826 44.000 11.12 0.00 42.44 2.17
906 1271 6.321435 TCAAATCGCCTCACTTCTCTCTATTA 59.679 38.462 0.00 0.00 0.00 0.98
946 1318 1.062505 AGGACCCCTTCTCTCATCTCC 60.063 57.143 0.00 0.00 0.00 3.71
970 1345 3.894427 AGTTGTGCCCAATGTCACATTTA 59.106 39.130 0.00 0.00 42.07 1.40
979 1354 6.426328 GCCCAATGTCACATTTAGATCTAGAG 59.574 42.308 0.00 0.07 0.00 2.43
980 1355 7.687837 GCCCAATGTCACATTTAGATCTAGAGA 60.688 40.741 0.00 0.00 0.00 3.10
981 1356 7.871973 CCCAATGTCACATTTAGATCTAGAGAG 59.128 40.741 0.00 0.00 0.00 3.20
984 1359 9.814899 AATGTCACATTTAGATCTAGAGAGTTG 57.185 33.333 0.00 0.00 0.00 3.16
985 1360 7.261325 TGTCACATTTAGATCTAGAGAGTTGC 58.739 38.462 2.02 0.00 0.00 4.17
987 1362 5.689514 CACATTTAGATCTAGAGAGTTGCGG 59.310 44.000 2.02 0.00 0.00 5.69
988 1363 5.594725 ACATTTAGATCTAGAGAGTTGCGGA 59.405 40.000 2.02 0.00 0.00 5.54
989 1364 5.759506 TTTAGATCTAGAGAGTTGCGGAG 57.240 43.478 2.02 0.00 0.00 4.63
994 1369 0.395862 TAGAGAGTTGCGGAGAGGGG 60.396 60.000 0.00 0.00 0.00 4.79
995 1370 3.378399 GAGAGTTGCGGAGAGGGGC 62.378 68.421 0.00 0.00 0.00 5.80
996 1371 4.475135 GAGTTGCGGAGAGGGGCC 62.475 72.222 0.00 0.00 0.00 5.80
1015 1390 0.877649 CGGCATGGAGATTGACGGAG 60.878 60.000 0.00 0.00 41.91 4.63
1045 1420 1.492176 CAGTGGGACCATGGATTAGCT 59.508 52.381 21.47 7.88 0.00 3.32
1051 1426 3.372025 GGGACCATGGATTAGCTTCTTGT 60.372 47.826 21.47 0.00 0.00 3.16
1072 1447 0.249489 GATGCAGAATCCGTACCGCT 60.249 55.000 0.00 0.00 0.00 5.52
1079 1454 4.753662 TCCGTACCGCTGGAGGCT 62.754 66.667 1.50 0.00 39.13 4.58
1093 1468 4.021925 GGCTTGGTCGTGGAGGCT 62.022 66.667 0.00 0.00 33.61 4.58
1115 1490 0.033405 TCCCAGGAACTCTACCTCCG 60.033 60.000 0.00 0.00 34.60 4.63
1146 1521 3.565764 CCACTGGGATTTATCAGCTCA 57.434 47.619 0.00 0.00 35.59 4.26
1150 1525 1.140852 TGGGATTTATCAGCTCACCCG 59.859 52.381 0.00 0.00 38.75 5.28
1152 1527 1.230324 GATTTATCAGCTCACCCGGC 58.770 55.000 0.00 0.00 0.00 6.13
1163 1539 3.647771 ACCCGGCTTCCACCTTCC 61.648 66.667 0.00 0.00 0.00 3.46
1173 1549 0.543410 TCCACCTTCCTCGCCTTACA 60.543 55.000 0.00 0.00 0.00 2.41
1178 1554 0.460987 CTTCCTCGCCTTACAGCCAG 60.461 60.000 0.00 0.00 0.00 4.85
1238 1614 1.148723 GGATCATGCTCCTGCTGCT 59.851 57.895 8.39 0.00 40.48 4.24
1280 1656 2.594303 CTCGCACAGGGTGGCAAA 60.594 61.111 0.00 0.00 33.64 3.68
1281 1657 1.973281 CTCGCACAGGGTGGCAAAT 60.973 57.895 0.00 0.00 33.64 2.32
1283 1659 2.973082 GCACAGGGTGGCAAATCC 59.027 61.111 0.00 0.00 33.64 3.01
1352 1728 3.524648 TTCGACCTTGCCACGGACC 62.525 63.158 0.00 0.00 0.00 4.46
1354 1730 3.998672 GACCTTGCCACGGACCGA 61.999 66.667 23.38 0.00 0.00 4.69
1355 1731 4.309950 ACCTTGCCACGGACCGAC 62.310 66.667 23.38 10.11 0.00 4.79
1419 1795 1.195448 CTTGATGATTATGGCGCCGAC 59.805 52.381 23.90 11.32 0.00 4.79
1448 1824 2.544685 CCGACTATGCTCAGGTTCTTG 58.455 52.381 0.00 0.00 0.00 3.02
1454 1830 2.035442 GCTCAGGTTCTTGCCGACC 61.035 63.158 0.00 0.00 36.15 4.79
1473 1849 1.503542 GCCTCGCAACTTGGATGTG 59.496 57.895 0.00 0.00 0.00 3.21
1475 1851 1.522668 CCTCGCAACTTGGATGTGAA 58.477 50.000 0.00 0.00 36.91 3.18
1478 1854 2.485426 CTCGCAACTTGGATGTGAACAT 59.515 45.455 0.00 0.00 36.91 2.71
1495 1871 2.404215 ACATCGAGTTCACTTTCACCG 58.596 47.619 0.00 0.00 0.00 4.94
1511 1887 5.521906 TTCACCGATGAAATCCAAAACAA 57.478 34.783 0.00 0.00 41.99 2.83
1515 1891 6.423302 TCACCGATGAAATCCAAAACAAAATG 59.577 34.615 0.00 0.00 41.39 2.32
1519 1895 5.046288 TGAAATCCAAAACAAAATGCCCT 57.954 34.783 0.00 0.00 0.00 5.19
1546 1922 6.204108 GCAAGGTCAGTACTACTTTTGCTTTA 59.796 38.462 19.09 0.00 35.97 1.85
1547 1923 7.255001 GCAAGGTCAGTACTACTTTTGCTTTAA 60.255 37.037 19.09 0.00 35.97 1.52
1553 1929 9.555727 TCAGTACTACTTTTGCTTTAACTGATT 57.444 29.630 0.00 0.00 36.75 2.57
1584 1960 9.788960 ACTTTTTAGTGTTTCTTCTGAAATGTC 57.211 29.630 0.00 0.00 43.14 3.06
1598 1974 8.421249 TTCTGAAATGTCCAAATTCCAAGTAT 57.579 30.769 0.00 0.00 0.00 2.12
1599 1975 8.055279 TCTGAAATGTCCAAATTCCAAGTATC 57.945 34.615 0.00 0.00 0.00 2.24
1674 2053 2.050350 CCATCAGCCAAGCCCACAG 61.050 63.158 0.00 0.00 0.00 3.66
1682 2061 0.895559 CCAAGCCCACAGTCCCTTTC 60.896 60.000 0.00 0.00 0.00 2.62
1690 2069 1.610522 CACAGTCCCTTTCTGCTTTGG 59.389 52.381 0.00 0.00 36.50 3.28
1694 2073 0.112412 TCCCTTTCTGCTTTGGTCCC 59.888 55.000 0.00 0.00 0.00 4.46
1699 2078 1.065410 TTCTGCTTTGGTCCCCTCCA 61.065 55.000 0.00 0.00 35.49 3.86
1707 2086 2.032071 GTCCCCTCCACCACAACG 59.968 66.667 0.00 0.00 0.00 4.10
1721 2100 2.489971 CACAACGACCATGTTACAGGT 58.510 47.619 6.27 6.27 41.83 4.00
1731 2110 3.600388 CATGTTACAGGTCAGGTTCCTC 58.400 50.000 0.00 0.00 32.37 3.71
1785 3546 5.598769 ACGTACCTATAGTTCAAATCCTGC 58.401 41.667 0.00 0.00 0.00 4.85
1789 3550 6.067217 ACCTATAGTTCAAATCCTGCAAGT 57.933 37.500 0.00 0.00 0.00 3.16
1802 3563 2.892025 GCAAGTTGCATCCCCTGAT 58.108 52.632 22.90 0.00 44.26 2.90
1825 3586 2.725815 GCAACGCTCCAACAACGC 60.726 61.111 0.00 0.00 0.00 4.84
1826 3587 2.712539 CAACGCTCCAACAACGCA 59.287 55.556 0.00 0.00 0.00 5.24
1892 3654 4.307032 AGACAACAACATAAGGGAGCAT 57.693 40.909 0.00 0.00 0.00 3.79
1922 3684 5.293079 TGAAGGTTAATTTGTTTGTTGCAGC 59.707 36.000 0.00 0.00 0.00 5.25
1935 3697 1.135859 GTTGCAGCAAAGGACAGATCG 60.136 52.381 10.11 0.00 0.00 3.69
1960 3722 8.540492 CGATGTACTACATGATTTTTACTCCAC 58.460 37.037 6.41 0.00 39.27 4.02
2000 3762 6.159293 TGCACTTAAGTAGTCACTCAATCAG 58.841 40.000 8.04 0.00 33.85 2.90
2002 3764 6.572509 GCACTTAAGTAGTCACTCAATCAGGA 60.573 42.308 8.04 0.00 33.85 3.86
2030 3792 9.855021 ACGCTAAACTGAAAATAAGCAATAAAT 57.145 25.926 0.00 0.00 0.00 1.40
2140 3902 7.545362 AAATCAGATGAACAAATCTCGGTAG 57.455 36.000 0.00 0.00 34.60 3.18
2150 3912 5.460646 ACAAATCTCGGTAGTGCAAAATTG 58.539 37.500 0.00 0.00 0.00 2.32
2159 3921 6.858993 TCGGTAGTGCAAAATTGTTATGAAAC 59.141 34.615 0.00 0.00 36.07 2.78
2193 3955 4.483311 TGCACGTTCGTTGTACATATACA 58.517 39.130 0.00 0.00 39.63 2.29
2298 4060 3.733337 AGATGTCGTTGCTCTTTTCAGT 58.267 40.909 0.00 0.00 0.00 3.41
2360 4123 6.666678 AGCCATGTAGATCCCCAAATATATG 58.333 40.000 0.00 0.00 0.00 1.78
2397 4160 9.254421 GAAAATCGTACAAAATTCTAACCGTAC 57.746 33.333 0.00 0.00 0.00 3.67
2398 4161 7.887996 AATCGTACAAAATTCTAACCGTACA 57.112 32.000 0.00 0.00 31.68 2.90
2399 4162 8.483307 AATCGTACAAAATTCTAACCGTACAT 57.517 30.769 0.00 0.00 31.68 2.29
2400 4163 9.585099 AATCGTACAAAATTCTAACCGTACATA 57.415 29.630 0.00 0.00 31.68 2.29
2413 4176 9.624373 TCTAACCGTACATAGAGTAAAGAAGAT 57.376 33.333 0.00 0.00 33.72 2.40
2414 4177 9.666626 CTAACCGTACATAGAGTAAAGAAGATG 57.333 37.037 0.00 0.00 33.72 2.90
2415 4178 7.642082 ACCGTACATAGAGTAAAGAAGATGT 57.358 36.000 0.00 0.00 33.72 3.06
2436 4199 6.201226 TGTACTCTAAGATCTCTTGCACTG 57.799 41.667 0.00 0.00 37.40 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.841295 TCGGTATTTTACTTGGAGCTATATTTT 57.159 29.630 0.00 0.00 0.00 1.82
5 6 9.436957 CATCGGTATTTTACTTGGAGCTATATT 57.563 33.333 0.00 0.00 0.00 1.28
6 7 8.041323 CCATCGGTATTTTACTTGGAGCTATAT 58.959 37.037 0.00 0.00 0.00 0.86
7 8 7.015877 ACCATCGGTATTTTACTTGGAGCTATA 59.984 37.037 0.00 0.00 32.11 1.31
8 9 6.183361 ACCATCGGTATTTTACTTGGAGCTAT 60.183 38.462 0.00 0.00 32.11 2.97
9 10 5.129815 ACCATCGGTATTTTACTTGGAGCTA 59.870 40.000 0.00 0.00 32.11 3.32
10 11 4.080526 ACCATCGGTATTTTACTTGGAGCT 60.081 41.667 0.00 0.00 32.11 4.09
11 12 4.196971 ACCATCGGTATTTTACTTGGAGC 58.803 43.478 0.00 0.00 32.11 4.70
12 13 4.506654 CGACCATCGGTATTTTACTTGGAG 59.493 45.833 0.00 0.00 35.25 3.86
13 14 4.081531 ACGACCATCGGTATTTTACTTGGA 60.082 41.667 2.97 0.00 45.59 3.53
14 15 4.186159 ACGACCATCGGTATTTTACTTGG 58.814 43.478 2.97 0.00 45.59 3.61
15 16 4.865925 TGACGACCATCGGTATTTTACTTG 59.134 41.667 2.97 0.00 45.59 3.16
16 17 5.075858 TGACGACCATCGGTATTTTACTT 57.924 39.130 2.97 0.00 45.59 2.24
17 18 4.400251 TCTGACGACCATCGGTATTTTACT 59.600 41.667 2.97 0.00 45.59 2.24
18 19 4.675510 TCTGACGACCATCGGTATTTTAC 58.324 43.478 2.97 0.00 45.59 2.01
19 20 4.987408 TCTGACGACCATCGGTATTTTA 57.013 40.909 2.97 0.00 45.59 1.52
20 21 3.880047 TCTGACGACCATCGGTATTTT 57.120 42.857 2.97 0.00 45.59 1.82
21 22 3.446161 TCTTCTGACGACCATCGGTATTT 59.554 43.478 2.97 0.00 45.59 1.40
22 23 3.021695 TCTTCTGACGACCATCGGTATT 58.978 45.455 2.97 0.00 45.59 1.89
23 24 2.651455 TCTTCTGACGACCATCGGTAT 58.349 47.619 2.97 0.00 45.59 2.73
24 25 2.118313 TCTTCTGACGACCATCGGTA 57.882 50.000 2.97 0.00 45.59 4.02
25 26 1.254026 TTCTTCTGACGACCATCGGT 58.746 50.000 2.97 0.00 45.59 4.69
26 27 2.363788 TTTCTTCTGACGACCATCGG 57.636 50.000 2.97 0.00 45.59 4.18
27 28 4.045104 CCTATTTCTTCTGACGACCATCG 58.955 47.826 0.00 0.00 46.93 3.84
28 29 4.372656 CCCTATTTCTTCTGACGACCATC 58.627 47.826 0.00 0.00 0.00 3.51
29 30 3.134804 CCCCTATTTCTTCTGACGACCAT 59.865 47.826 0.00 0.00 0.00 3.55
30 31 2.500098 CCCCTATTTCTTCTGACGACCA 59.500 50.000 0.00 0.00 0.00 4.02
31 32 2.764572 TCCCCTATTTCTTCTGACGACC 59.235 50.000 0.00 0.00 0.00 4.79
32 33 4.372656 CATCCCCTATTTCTTCTGACGAC 58.627 47.826 0.00 0.00 0.00 4.34
33 34 3.181465 GCATCCCCTATTTCTTCTGACGA 60.181 47.826 0.00 0.00 0.00 4.20
34 35 3.134458 GCATCCCCTATTTCTTCTGACG 58.866 50.000 0.00 0.00 0.00 4.35
35 36 3.117888 TGGCATCCCCTATTTCTTCTGAC 60.118 47.826 0.00 0.00 0.00 3.51
36 37 3.117888 GTGGCATCCCCTATTTCTTCTGA 60.118 47.826 0.00 0.00 0.00 3.27
37 38 3.117738 AGTGGCATCCCCTATTTCTTCTG 60.118 47.826 0.00 0.00 0.00 3.02
38 39 3.126453 AGTGGCATCCCCTATTTCTTCT 58.874 45.455 0.00 0.00 0.00 2.85
39 40 3.481453 GAGTGGCATCCCCTATTTCTTC 58.519 50.000 0.00 0.00 0.00 2.87
40 41 2.158755 CGAGTGGCATCCCCTATTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
41 42 1.417890 CGAGTGGCATCCCCTATTTCT 59.582 52.381 0.00 0.00 0.00 2.52
42 43 1.543429 CCGAGTGGCATCCCCTATTTC 60.543 57.143 0.00 0.00 0.00 2.17
43 44 0.474184 CCGAGTGGCATCCCCTATTT 59.526 55.000 0.00 0.00 0.00 1.40
44 45 1.418908 CCCGAGTGGCATCCCCTATT 61.419 60.000 0.00 0.00 0.00 1.73
45 46 1.843376 CCCGAGTGGCATCCCCTAT 60.843 63.158 0.00 0.00 0.00 2.57
46 47 2.445845 CCCGAGTGGCATCCCCTA 60.446 66.667 0.00 0.00 0.00 3.53
55 56 3.704231 CTTGGGGATGCCCGAGTGG 62.704 68.421 27.81 7.11 46.66 4.00
56 57 2.124570 CTTGGGGATGCCCGAGTG 60.125 66.667 27.81 7.84 46.66 3.51
57 58 4.115199 GCTTGGGGATGCCCGAGT 62.115 66.667 33.65 0.00 46.66 4.18
58 59 1.983119 TAAGCTTGGGGATGCCCGAG 61.983 60.000 30.90 30.90 46.66 4.63
59 60 1.567208 TTAAGCTTGGGGATGCCCGA 61.567 55.000 18.66 15.58 46.66 5.14
60 61 0.468029 ATTAAGCTTGGGGATGCCCG 60.468 55.000 18.66 5.21 46.66 6.13
61 62 1.413812 CAATTAAGCTTGGGGATGCCC 59.586 52.381 16.99 16.99 44.51 5.36
62 63 1.202568 GCAATTAAGCTTGGGGATGCC 60.203 52.381 9.86 0.00 0.00 4.40
63 64 1.758862 AGCAATTAAGCTTGGGGATGC 59.241 47.619 9.86 12.09 43.70 3.91
73 74 7.308435 TCTAAAAGAGAAGCAAGCAATTAAGC 58.692 34.615 0.00 0.00 0.00 3.09
77 78 9.018582 AGTTATCTAAAAGAGAAGCAAGCAATT 57.981 29.630 0.00 0.00 37.85 2.32
78 79 8.457261 CAGTTATCTAAAAGAGAAGCAAGCAAT 58.543 33.333 0.00 0.00 37.85 3.56
79 80 7.661437 TCAGTTATCTAAAAGAGAAGCAAGCAA 59.339 33.333 0.00 0.00 37.85 3.91
80 81 7.161404 TCAGTTATCTAAAAGAGAAGCAAGCA 58.839 34.615 0.00 0.00 37.85 3.91
81 82 7.602517 TCAGTTATCTAAAAGAGAAGCAAGC 57.397 36.000 0.00 0.00 37.85 4.01
82 83 9.376075 TGATCAGTTATCTAAAAGAGAAGCAAG 57.624 33.333 0.00 0.00 37.85 4.01
83 84 9.896645 ATGATCAGTTATCTAAAAGAGAAGCAA 57.103 29.630 0.09 0.00 37.85 3.91
84 85 9.539825 GATGATCAGTTATCTAAAAGAGAAGCA 57.460 33.333 0.09 0.00 37.85 3.91
85 86 9.539825 TGATGATCAGTTATCTAAAAGAGAAGC 57.460 33.333 0.09 0.00 37.85 3.86
88 89 9.823647 GGTTGATGATCAGTTATCTAAAAGAGA 57.176 33.333 0.09 0.00 39.01 3.10
89 90 8.759641 CGGTTGATGATCAGTTATCTAAAAGAG 58.240 37.037 0.09 0.00 35.45 2.85
90 91 7.224753 GCGGTTGATGATCAGTTATCTAAAAGA 59.775 37.037 0.09 0.00 35.45 2.52
91 92 7.011389 TGCGGTTGATGATCAGTTATCTAAAAG 59.989 37.037 0.09 0.00 35.45 2.27
92 93 6.821160 TGCGGTTGATGATCAGTTATCTAAAA 59.179 34.615 0.09 0.00 35.45 1.52
93 94 6.257849 GTGCGGTTGATGATCAGTTATCTAAA 59.742 38.462 0.09 0.00 35.45 1.85
94 95 5.753438 GTGCGGTTGATGATCAGTTATCTAA 59.247 40.000 0.09 0.00 35.45 2.10
95 96 5.289595 GTGCGGTTGATGATCAGTTATCTA 58.710 41.667 0.09 0.00 35.45 1.98
96 97 4.122776 GTGCGGTTGATGATCAGTTATCT 58.877 43.478 0.09 0.00 35.45 1.98
97 98 3.248602 GGTGCGGTTGATGATCAGTTATC 59.751 47.826 0.09 0.00 34.93 1.75
98 99 3.118261 AGGTGCGGTTGATGATCAGTTAT 60.118 43.478 0.09 0.00 0.00 1.89
99 100 2.236146 AGGTGCGGTTGATGATCAGTTA 59.764 45.455 0.09 0.00 0.00 2.24
100 101 1.003580 AGGTGCGGTTGATGATCAGTT 59.996 47.619 0.09 0.00 0.00 3.16
101 102 0.615331 AGGTGCGGTTGATGATCAGT 59.385 50.000 0.09 0.00 0.00 3.41
102 103 1.012086 CAGGTGCGGTTGATGATCAG 58.988 55.000 0.09 0.00 0.00 2.90
103 104 1.026182 GCAGGTGCGGTTGATGATCA 61.026 55.000 0.00 0.00 0.00 2.92
104 105 1.026182 TGCAGGTGCGGTTGATGATC 61.026 55.000 0.00 0.00 45.83 2.92
105 106 1.002257 TGCAGGTGCGGTTGATGAT 60.002 52.632 0.00 0.00 45.83 2.45
106 107 1.965930 GTGCAGGTGCGGTTGATGA 60.966 57.895 0.00 0.00 45.83 2.92
107 108 1.588824 ATGTGCAGGTGCGGTTGATG 61.589 55.000 0.00 0.00 45.83 3.07
108 109 1.303561 ATGTGCAGGTGCGGTTGAT 60.304 52.632 0.00 0.00 45.83 2.57
109 110 2.112928 ATGTGCAGGTGCGGTTGA 59.887 55.556 0.00 0.00 45.83 3.18
110 111 2.256158 CATGTGCAGGTGCGGTTG 59.744 61.111 0.00 0.00 45.83 3.77
111 112 2.746412 TAGCATGTGCAGGTGCGGTT 62.746 55.000 15.29 3.85 45.69 4.44
112 113 3.252627 TAGCATGTGCAGGTGCGGT 62.253 57.895 15.29 4.45 45.69 5.68
113 114 2.436469 TAGCATGTGCAGGTGCGG 60.436 61.111 15.29 0.00 45.69 5.69
114 115 1.300971 AACTAGCATGTGCAGGTGCG 61.301 55.000 15.29 6.98 45.69 5.34
212 214 9.866655 TTTAAGAATGAAGGGAGTATATGCATT 57.133 29.630 3.54 0.00 0.00 3.56
333 335 4.962155 ACCTTTAGAGATTTCGCCATAGG 58.038 43.478 0.00 0.00 0.00 2.57
338 340 8.834749 AATATAAGACCTTTAGAGATTTCGCC 57.165 34.615 0.00 0.00 0.00 5.54
414 419 8.553153 TGACATACCAATAGGAGGAATTACAAA 58.447 33.333 0.00 0.00 38.69 2.83
428 433 3.512329 AGACACGGTGTGACATACCAATA 59.488 43.478 20.06 0.00 38.11 1.90
469 474 3.003068 TCGAGCCATTAGACTACTAACGC 59.997 47.826 0.00 0.00 40.71 4.84
487 492 3.040147 TGGCTCTTACCAAAAGTCGAG 57.960 47.619 0.00 0.00 36.55 4.04
516 521 6.588756 TCACGTTAAAAGTGGTATTCTGCTAG 59.411 38.462 11.08 0.00 39.86 3.42
537 542 4.224433 ACAAGACACGTTATACACTCACG 58.776 43.478 0.00 0.00 39.86 4.35
609 621 6.708285 AGTTTAATATCAACGGAGACACCTT 58.292 36.000 0.00 0.00 36.31 3.50
615 636 8.246180 ACTTACGAAGTTTAATATCAACGGAGA 58.754 33.333 0.00 0.00 37.78 3.71
758 782 4.432373 GCCGTAAAATTGATGCGTTGTTTC 60.432 41.667 2.33 0.00 0.00 2.78
767 791 4.997565 AGATGTTGGCCGTAAAATTGATG 58.002 39.130 0.00 0.00 0.00 3.07
794 1010 4.440112 GGGTTAAGATCAAATTTCTGGGCG 60.440 45.833 0.00 0.00 0.00 6.13
845 1061 5.398416 CGATACGTATACATGTTGGACACAG 59.602 44.000 8.34 0.00 39.40 3.66
846 1062 5.066246 TCGATACGTATACATGTTGGACACA 59.934 40.000 8.34 0.00 40.71 3.72
933 1305 3.768406 CACAACTCGGAGATGAGAGAAG 58.232 50.000 20.38 1.61 39.35 2.85
946 1318 0.238289 GTGACATTGGGCACAACTCG 59.762 55.000 1.86 0.00 39.87 4.18
970 1345 3.476552 CTCTCCGCAACTCTCTAGATCT 58.523 50.000 0.00 0.00 0.00 2.75
979 1354 4.475135 GGCCCCTCTCCGCAACTC 62.475 72.222 0.00 0.00 0.00 3.01
994 1369 2.537560 CGTCAATCTCCATGCCGGC 61.538 63.158 22.73 22.73 33.14 6.13
995 1370 1.889105 CCGTCAATCTCCATGCCGG 60.889 63.158 0.00 0.00 0.00 6.13
996 1371 0.877649 CTCCGTCAATCTCCATGCCG 60.878 60.000 0.00 0.00 0.00 5.69
997 1372 1.162800 GCTCCGTCAATCTCCATGCC 61.163 60.000 0.00 0.00 0.00 4.40
998 1373 0.462581 TGCTCCGTCAATCTCCATGC 60.463 55.000 0.00 0.00 0.00 4.06
999 1374 1.579698 CTGCTCCGTCAATCTCCATG 58.420 55.000 0.00 0.00 0.00 3.66
1000 1375 0.179062 GCTGCTCCGTCAATCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
1001 1376 1.219124 GCTGCTCCGTCAATCTCCA 59.781 57.895 0.00 0.00 0.00 3.86
1002 1377 0.809241 CTGCTGCTCCGTCAATCTCC 60.809 60.000 0.00 0.00 0.00 3.71
1072 1447 2.525629 TCCACGACCAAGCCTCCA 60.526 61.111 0.00 0.00 0.00 3.86
1079 1454 2.203788 AGGAGCCTCCACGACCAA 60.204 61.111 14.46 0.00 39.61 3.67
1093 1468 1.288335 GAGGTAGAGTTCCTGGGAGGA 59.712 57.143 0.00 0.00 44.10 3.71
1123 1498 1.597742 CTGATAAATCCCAGTGGGCG 58.402 55.000 24.75 0.37 43.94 6.13
1125 1500 2.173356 TGAGCTGATAAATCCCAGTGGG 59.827 50.000 23.57 23.57 46.11 4.61
1137 1512 1.686325 GGAAGCCGGGTGAGCTGATA 61.686 60.000 7.07 0.00 40.49 2.15
1146 1521 3.647771 GGAAGGTGGAAGCCGGGT 61.648 66.667 0.00 0.00 32.25 5.28
1150 1525 2.436824 GCGAGGAAGGTGGAAGCC 60.437 66.667 0.00 0.00 32.25 4.35
1152 1527 0.902531 TAAGGCGAGGAAGGTGGAAG 59.097 55.000 0.00 0.00 0.00 3.46
1238 1614 1.227468 GAGAGCAGCATCCGCATCA 60.227 57.895 0.00 0.00 42.27 3.07
1376 1752 3.803082 CCACAACATGAGCGGCGG 61.803 66.667 9.78 0.00 0.00 6.13
1381 1757 2.690778 GGGCGTCCACAACATGAGC 61.691 63.158 0.00 0.00 0.00 4.26
1385 1761 0.038166 ATCAAGGGCGTCCACAACAT 59.962 50.000 9.71 0.00 34.83 2.71
1386 1762 0.888736 CATCAAGGGCGTCCACAACA 60.889 55.000 9.71 0.00 34.83 3.33
1387 1763 0.605319 TCATCAAGGGCGTCCACAAC 60.605 55.000 9.71 0.00 34.83 3.32
1388 1764 0.327924 ATCATCAAGGGCGTCCACAA 59.672 50.000 9.71 0.00 34.83 3.33
1424 1800 2.659897 CTGAGCATAGTCGGGCGC 60.660 66.667 0.00 0.00 34.54 6.53
1454 1830 2.034879 ACATCCAAGTTGCGAGGCG 61.035 57.895 0.00 0.00 0.00 5.52
1475 1851 2.035449 TCGGTGAAAGTGAACTCGATGT 59.965 45.455 0.00 0.00 0.00 3.06
1478 1854 2.295070 TCATCGGTGAAAGTGAACTCGA 59.705 45.455 0.00 0.00 0.00 4.04
1494 1870 5.390779 GGGCATTTTGTTTTGGATTTCATCG 60.391 40.000 0.00 0.00 0.00 3.84
1495 1871 5.706833 AGGGCATTTTGTTTTGGATTTCATC 59.293 36.000 0.00 0.00 0.00 2.92
1519 1895 4.274950 GCAAAAGTAGTACTGACCTTGCAA 59.725 41.667 22.34 0.00 38.20 4.08
1560 1936 8.744652 TGGACATTTCAGAAGAAACACTAAAAA 58.255 29.630 0.00 0.00 45.79 1.94
1584 1960 8.731275 TGTACTGTATGATACTTGGAATTTGG 57.269 34.615 4.03 0.00 0.00 3.28
1674 2053 1.248486 GGACCAAAGCAGAAAGGGAC 58.752 55.000 0.00 0.00 0.00 4.46
1690 2069 2.032071 CGTTGTGGTGGAGGGGAC 59.968 66.667 0.00 0.00 0.00 4.46
1694 2073 0.955428 CATGGTCGTTGTGGTGGAGG 60.955 60.000 0.00 0.00 0.00 4.30
1699 2078 2.489971 CTGTAACATGGTCGTTGTGGT 58.510 47.619 0.00 0.00 0.00 4.16
1724 2103 5.360429 CCTAAGTAGGTTAGACAGAGGAACC 59.640 48.000 0.00 0.00 40.79 3.62
1725 2104 5.163530 GCCTAAGTAGGTTAGACAGAGGAAC 60.164 48.000 6.25 0.00 45.42 3.62
1726 2105 4.954826 GCCTAAGTAGGTTAGACAGAGGAA 59.045 45.833 6.25 0.00 45.42 3.36
1727 2106 4.017775 TGCCTAAGTAGGTTAGACAGAGGA 60.018 45.833 6.25 0.00 45.42 3.71
1731 2110 7.390718 ACATTTTTGCCTAAGTAGGTTAGACAG 59.609 37.037 6.25 0.00 45.42 3.51
1822 3583 1.299541 CAAGAGGAACACAACTGCGT 58.700 50.000 0.00 0.00 0.00 5.24
1823 3584 0.040958 GCAAGAGGAACACAACTGCG 60.041 55.000 0.00 0.00 0.00 5.18
1825 3586 2.843701 AGAGCAAGAGGAACACAACTG 58.156 47.619 0.00 0.00 0.00 3.16
1826 3587 3.135530 AGAAGAGCAAGAGGAACACAACT 59.864 43.478 0.00 0.00 0.00 3.16
1829 3590 5.717178 AGTATAGAAGAGCAAGAGGAACACA 59.283 40.000 0.00 0.00 0.00 3.72
1872 3633 4.458989 TCAATGCTCCCTTATGTTGTTGTC 59.541 41.667 0.00 0.00 0.00 3.18
1873 3634 4.406456 TCAATGCTCCCTTATGTTGTTGT 58.594 39.130 0.00 0.00 0.00 3.32
1879 3641 5.374921 CTTCATCTCAATGCTCCCTTATGT 58.625 41.667 0.00 0.00 32.58 2.29
1892 3654 9.311916 CAACAAACAAATTAACCTTCATCTCAA 57.688 29.630 0.00 0.00 0.00 3.02
1922 3684 5.891451 TGTAGTACATCGATCTGTCCTTTG 58.109 41.667 0.00 0.00 0.00 2.77
1935 3697 8.827677 GGTGGAGTAAAAATCATGTAGTACATC 58.172 37.037 13.00 0.00 36.53 3.06
1985 3747 3.368236 GCGTTTCCTGATTGAGTGACTAC 59.632 47.826 0.00 0.00 0.00 2.73
1993 3755 4.637276 TCAGTTTAGCGTTTCCTGATTGA 58.363 39.130 0.00 0.00 0.00 2.57
2000 3762 6.146898 TGCTTATTTTCAGTTTAGCGTTTCC 58.853 36.000 0.00 0.00 0.00 3.13
2002 3764 9.685828 TTATTGCTTATTTTCAGTTTAGCGTTT 57.314 25.926 0.00 0.00 0.00 3.60
2150 3912 9.092322 CGTGCATTCTATAAATCGTTTCATAAC 57.908 33.333 0.00 0.00 0.00 1.89
2159 3921 5.311016 ACGAACGTGCATTCTATAAATCG 57.689 39.130 0.00 0.00 0.00 3.34
2220 3982 3.512329 ATTCCATTGAATTGCTGACAGCA 59.488 39.130 26.10 26.10 40.30 4.41
2232 3994 3.699413 TGCAGATGTGGATTCCATTGAA 58.301 40.909 9.01 0.00 35.28 2.69
2233 3995 3.369242 TGCAGATGTGGATTCCATTGA 57.631 42.857 9.01 0.00 35.28 2.57
2275 4037 5.297547 ACTGAAAAGAGCAACGACATCTTA 58.702 37.500 0.00 0.00 33.05 2.10
2313 4075 6.974622 GCTACATTTTTCCATTGGTGTATCAG 59.025 38.462 1.86 0.00 0.00 2.90
2327 4089 5.241728 GGGGATCTACATGGCTACATTTTTC 59.758 44.000 0.00 0.00 34.35 2.29
2376 4139 8.458052 TCTATGTACGGTTAGAATTTTGTACGA 58.542 33.333 0.00 0.00 36.00 3.43
2408 4171 7.647715 GTGCAAGAGATCTTAGAGTACATCTTC 59.352 40.741 0.00 0.00 39.64 2.87
2413 4176 5.946377 TCAGTGCAAGAGATCTTAGAGTACA 59.054 40.000 0.00 0.00 34.28 2.90
2414 4177 6.443934 TCAGTGCAAGAGATCTTAGAGTAC 57.556 41.667 0.00 0.00 34.28 2.73
2415 4178 6.096141 CCTTCAGTGCAAGAGATCTTAGAGTA 59.904 42.308 0.00 0.00 34.28 2.59
2424 4187 3.134442 GGAGATCCTTCAGTGCAAGAGAT 59.866 47.826 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.