>input_sequence_76185
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--------------ATGGAGATTGACGGAGCAGCAGCCGCAGTGGGACCATGGATTAGCTTCTTGTGGATGCAGAATCCG
TACCGCTGGAGGCTTGGTCGTGGAGGCTCCTCCCAGGAACTCTACCTCCGGCGGCGGCGCCCACTGGGATTTATCAGCTC
ACCCGGCTT-CCACCTTCCTCGCCTTACAGCCAGCGCTGCCGATGCCCCTGCCCCAGCCGTGGGACGCAGACGGAGGATC
ATGCTCCTGCTGCTGATGCGGATGCTGCTCTCGTCGACCTCGCACAGGGTGGCAAATCCGCCGTGCACGCTGCCCAGCTC
GATGCTGAAGCTATGGGTTCGGCTCCCCCTTCGACCTTGCCACGGACCGACGGACGGCGTCCACGCTGTGCCCGCCGCTC
ATGTTGTGGACGCCCTTGATGATTATGGCGCCGACGCGGGCGCCCGACTATGCTCAGGTTCTTGCCGACCGCCTCGCAAC
TTGGATGTGAACATCGAGTTCACTTTCACCGATGAAATCCAAAACAAAATGCCCTTGCAAGGTCAGTACTACTTTTGCTT
TAACTGA-------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G240500
ATAAAAATATAGCTCCAAGTAAAATACCGATGGTCGTCAGAAGAAATAGGGGATGCCACTCGGGCATCCCCAAGCTTAAT
TGCTTGCTTCTCTTTTAGATAACTGATCATCAACCGCACCTGCACATGCTAGTTAAGTTTTGTTATATCTTGCTACTTGG
CAATTAAAATCCATACTATTGTAAACCTTTTTCAATGATTTGTTTG-TATACTAATGCATATACTCCCTTCATTCTTAAA
TATAAGTCTTTTTAGAGATTCCACTATGGACTACACACAAATGTATGTAGTCATATTTTGAAGTGTAGATTCACTCATTT
TACTCTATATGTAGCCTATGGCGAAATCTCTAAAGGTCTTATATTTATTAACCGAGGGAGTAATATATTTCATATTTTTA
TGAGGTAGTTT---TTTTTTTGTAATTCCTCCTATTGGTATGTCACACCGTGTCTACTGAGATCTAAGCACCTGCGTTAG
TAGTCTAATGGCTCGACTTTTGGTAAGAGCCATTAGTCGCCTAGCAGAATACCACTTTTAACGTGAGTGTATAACGTGTC
TTGTTATTACATAATATC-------TTTAAGTCTTAGATAATTTCTATTTAGGTAGCACAAAGGT---------GTCTCC
GTTGATATTAAA-CTTCGTAAGTTGTTTAATTAGTGGACATAATTAAAAATAACTCATGTATTCAACATAAGATGTGCGA
GTGTACATGTGTATGGATGTTTTATTCAGGTTTATAAAACGTAATTAC--ATATATATTTTGAAACAACGCATCAATTTT
ACGGCCAACA----------------------------------------------------------------------
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------------------------------------------TCTTCTGCGCCCAGAAATTTGATCTTAACCCACGCTTT
ACTTCTAACTTTGACGATTCCTGTGTCCA---------------------------------------------------
-----------------------------------------------------------------------ACATGTATA
CGTATCGACTCATGGTCTTCAAATCGCCTCACTTC---------------------------TCTCTATTAAAAAAACAC
ATTATCCATTAG-------GACCCCTTCTCTCATCTCCGAGTTGTG---CCCAATGTCACATTTAGATCTAGAGAGTTGC
GGAGAGGGGCCGGCATGGAGATTGACGGAGCAGCAGCCGCAGTGGGACCATGGATTAGCTTCTTGTGGATGCAGAATCCG
TACCGCTGGAGGCTTGGTCGTGGAGGCTCCTCCCAGGAACTCTACCTCCGGCGGCGGCGCCCACTGGGATTTATCAGCTC
ACCCGGCTT-CCACCTTCCTCGCCTTACAGCCAGCGCTGCCGATGCCCCTGCCCCAGCCGTGGGACGCAGACGGAGGATC
ATGCTCCTGCTGCTGATGCGGATGCTGCTCTCGTCGACCTCGCACAGGGTGGCAAATCCGCCGTGCACGCTGCCCAGCTC
GATGCTGAAGCTATGGGTTCGGCTCCCCCTTCGACCTTGCCACGGACCGACGGACGGCGTCCACGCTGTGCCCGCCGCTC
ATGTTGTGGACGCCCTTGATGATTATGGCGCCGACGCGGGCGCCCGACTATGCTCAGGTTCTTGCCGACCGCCTCGCAAC
TTGGATGTGAACATCGAGTTCACTTTCACCGATGAAATCCAAAACAAAATGCCCTTGCAAGGTCAGTACTACTTTTGCTT
TAACTGATTATCAACTTTTTAGTGTTTCTTCTGAAATGTCCAAATTCCAAGTATCA---TACAGTACAATTGTAAAAATG
TTTTGGGACTTTCTACGACCTGTGCATAGCCCCGCCATCAGCCAAGCCCACAGTCCCTTTCTGCTTTGGTCCCCTCCACC
ACAACGACCATGTTACAGGTCAGGTTCCTCTGTCTAACCTACTTAGGCAAAAATGTAAA-TACGTACCTATAGTTCAAAT
CC------------------------------------------------------------------------------
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-----------------------TGCAAGTTGCATCCCCTGATGCTGCGCAACGCTCCAACAACGCAGTTGTGTTCCTCT
TGCTCTTCTATACTTCTGTATTTATTAAGAAAGA-CAACAACATAAGGGAGCATTGAGATGAAGGTTAATTTGTTTGTTG
CAGCAAAGGACAGATCGATGTACTACATGATTTTTACTCCACCTATATACAATTATATGCACTTAAGTAGTCACTCAATC
AGGAAACGCTAAACTGAAAATAAGCAATAAATTTCAGTCCTTATTTGTCACTATTAGAATTAATATTTAGCAACAACAGC
AAACAAAATCAGCACTGATCTCCTAGAGCACTGCTTAAAATCAGATGAACAAATCTCGGTAGTGCAAAATTGTTATGAAA
CGATTTATAGAATGCACGTTCGTTGTACATATACACACAATTAGAAAGATTTAAGCTAAAGTGCTGTCAGCAATTCAATG
GAATCCACATCTGCAAAATTTGCGCTGAGCTTTTCTTAAGATGTCGTTGCTCTTTTCAGTTTCATCAATAATATCTGATA
CACCAATGGAAAAA-TGTAGCCATGTAGATCCCCAAATATATGTAATTAGTTTGAAAATCGTACAAAATTCTAACCGTAC
ATAGAGTAAAGAAGATGTACTCTAAGATCTCTTGCACTGAAGGATCTCCTTGTACACTTGCCAAATTATTTCATTGT-GA
TTCTTCGGCTGTGATTAGAACTTTAAGTCCATCTGTAATACACCAACATTTAAATGTAGCCTTGTAGATCTATAT
>chr2D_116
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-----------------------------------GCACCTACACATGCTAGTTAAGTTTTGTTATATCTTGCTACTTGG
CAATTAGAATCCATACTGTTGTAAACCTTTTTCAGTGATTTGTTTC-TATACTGATGCATATACTCTCTCCATTCTTAAA
TATAAGACATTTTAGAGATTCCACTATGGACATG-----AATGTATGTAGTCATATTTTGGAGTGCAGATTCACTCATTT
TACTCTATATGTAGTCTATAGTGAAATATCTAAAGGTCTTATATTTAGGAACCGAGGGAGTCATATATTTCATATTTTTA
TGAGGTAGTTTATATTTTCTTGTAATTCCTCCGATTGGTATGTCACACCGTGTCTATTGAGATCTAAGCACCTTCGTTAG
TACTCTAATGGTTTGACTTTTGGTAAGAGCCATTAGTCGCGTAGCAGAATACCACTTTTAATGTGAGTGTATAACGTGTC
TTGTTATTACATAATATC-------TTTAAGTCTTAGATAATTTCTATTTAGGTAGCACAGAGGTGTATTTGGTGGCTCC
GTTGATATTAAATCTTCGTAACTTGTTTAATCAGTAGACATAATTAAAAATAACTCATGTATTCAACATAAGATGTGCGA
GTTTACATGTGTATGGATGTTTTATTCAGGTTTAGAAAACGTAATTACCTATATATATTTTAAAACAACGTATCAATTTT
ACGGCCAACAACTCCCGTATTAAGTATTCCAAAAAAGCTGCTCACCGACGATATGTGTATACATGTGCGTTTATGTTTTA
CTTGTGTTTAGAGAAAAAAACTCCCTATGGCAATTTGTCTATGTTTTACTTGGGTTTCAAAAACTCCCAAACAGTTCATG
TTTGAAATTAAATTTCC-TAAAATTTACATCTACTGTCATCATCTTCTGTGCCCTGAAATTTGATCTTAACCCACACTTT
ACTTCTAACTTTGACGATTCTGGTGTCCA---------------------------------------------------
-----------------------------------------------------------------------ACATGTATA
CGTATCGACTCATGGTCTTCAAATTGCCTCACTTC---------------------------TCTCTATT-AAAAAACAC
ATTATCCATTAG-------GACCCGTTCTCTCATCTCTGAGTTGTG---CCCAATGTCACATTTGGATCT----------
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>chr4B_116
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-----------------------------------GCACCTGCAGGGGCTAGTTAAGTTTTGTTATATCTTGCTAGGTTG
CAAGTAAAATCCGTACTATTGTAAAAAATTTCCATTATTTATTTGTATATACTGATGCATAAAG----------------
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---------------------------------------------------------------TATATTTCTTATTTTTA
TAGGAGG-----------------ATTCCTCTGGTTGGTATGT--CACCTTGTCTACTGAGATCTAAGCATCTTCGT-AG
TAGTCTAATGGTTCGTCTTACGGTAAAAGCCATTAGTCGCGTGGCGGAATAC-ACTTTTAATGCCAGTGTATACAGTGTC
TTGTTATTAAATACTACTCCTATCTTTTAAATTTTATATAATTTCTGTTTAGGTAGTACAGAGGTGTCTTTGGTGGCTCC
GGTGATATTAAATCTTTGCAACTTCTGTACTCAGTAGACG----TAAAAATAACTCATGTATTCAACATAAGATTTGCGA
GTGTACACGTGCATCGCTGATTTATTTAAGTTTAAAAAAACGTAATTGC---ATATATTTTAAATCAGCCTG-CAATTTT
ACGGCCAGCAACTCTCATATTAAGTATCCCAAAAGAGCTGCTCA-CGACGATACGTGTATACAT-TGTGTCTACGTTTTA
CTTGGGCTTT----AAAAAACTCCCAATGGCAGTTCGTCTATGTTTTACTTGGGTTATAGAAACTCCCAAGCAGTTCGTG
TTTGAAATTAAATTACTATAAAATTTACATCTATTCCCTCCGTTCCGAAATGTAAGTCTTTTTAGATATTCCAATGAGAG
ACTATATACGGAGCAAAATGGGTGAATCTACACTCTAAAATATATCTATATACATCCATATATAGTTTATAGTAGAATCT
CTAAAAAGACTTATATTTAGAAACGGAGGGAGTAACATAATATCCATTCACTTGTCATCTATTAAAAATATATATATACA
CGCACCGACTCCTGGTCTCTATTAAAAAATCCTGTGCCCAACATGTACGCATCGACACCTGGTCTCTATT-AAAAATATA
TGAAAAATAGCACCCGTTCGGCCGTTCCTTTCATCTCTGAGCTGTGCCCCCCAATGTCACATTTGGATCTAGATGCTTCT
GTGCAGGGAGTT-----GAGATTGACGGATCAGCAGCCGCAGTGGGACCATGGATTAGCATCTTGCGGATGCAGAATCTG
TACCGCCGGAGGCCTGGTCATGGAGGCGCCTCCCAGGAACTCTACCTCCAGCGGCGGTGGCCACTGGGATTCATCAGCTC
GCCCAGATTTCCACCTTCGTCGCCTTACCGCCACCACTGCCGACGCCCCTGCTCCAGCCGTGGGACGCAGACGGGGGATC
ATGCTCCTGCTGCGGATGCGGATACAGCTCTCGTCGACCTCGCACAGGGAGGCAAGCCTGCCGTGCACGCTGCCCAGCTC
GATGCTGAAGCTTCGGGTTCGGCTCCCCCTTCGACCTTGCCACGGACAA--------CGTCCATGCTGTGCGCGCCACTC
C---TGTGGACGCCCTTGATGATTATGGCGCCGATGCGGACG--------------------------------------
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>chr4B_1426
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----------------------------------------CGCCCGACTATGCTCAGGTTCTTCCCGACTGCCTCGCAAC
TTGGATGTCATCACCGAGTTAACTTTCACTCATGAAATC--------AATACCCATGCAAGGTCAGTACTACTTTTGCTT
TCTCTGATAATCAACCTTTTAGTGTTTCTTCTGAAATGTGCAAATTCCAAGTAGTATCTTACAGTACAATTGTAAAAATG
TTTTGGGACTTTCTACGACCTGTGCATAGCCCCGCCATCAGCCAAGCCCACATTCCCTTTTTGCTTTGTTCCTCTCCTCC
ACAACCACCATGTTACAGG-------CCTATGTCTAACCTACTTAGGCAAAAATGTAAAGTACGTACCTATAGGGCGTGT
TTGGTTTCCTGCACCACCTATAGGGCGTGTTTGGTTTCCTGGGTGCATCCAGCCTGCATCGTATGAGGGAGCTTGGCTGG
GGCTGGCCTGGTTCATCTGATGCAAGATGGAGTCGAGATGTGTGTTTGGTGTACTTGCATGATATGGGCCAGACTCACCT
CAGATGTTGTTTGGTAGGCTGCATGAGGCCAAATATATGATAAATGTGGAATTTGATTCTAGGTACTTGTACATGTATGC
AAAATAATTAGAAGACTGTTTTGGTGACATGCACTCCAACTCAGATATCTTTGATGATTGAAGTAAACTAATATTATCAA
ATACATATAAGAAATCATAATGTCTGCAATTTCATATGAAATCCTTGGAATCAAAGAGGCAGCTAAACAGGGAAAGAAAA
CAAATGAAAATTGATGTACTTCTGTGTATTCCATTGTCAACATTCACAAGGTCCAATATTTTGCATACATACACAGAACA
GCTCTGAAGGCACTTTTTACTGTCTATAATATCTACTCTAGCTAGCTGATCTCTTAATCCCAACAGCACAAATACAAAAC
AAACTAGCTTGTCTATCTTCTTCTTCTTCCTCTAGCTAGCTGATCTCTAGTTCTTCTTTATCCTGGTCAAATCAAAAGAA
ACATATACAGAAATTATTCACGAAGTTAACAAAAAAATATGCAGAATCATCTCTAATCCATAGGATCTCACAACCAGATC
GGGCCTCTACAAGGCCAGCGGCCGAATCAAACAGGAGATCAAGCTGCTCAATGGCAAGGGCACATCCCATGCTTGCTCAC
ATGCGTGGATCTAGTTGGCAGCAGCTCTCACAGGCAAATCAGGCGGCCGGCCGCGAGTGCCAGGCCGGTGCACGCGCGCC
CGTGGTCTACATGCCGCCGAAGTCCCGTGGTTGCTCTCACGACCGGCCGGGCGGCCGCGAGCGACGGCGAGCAGGTCGCC
AGAAGCTGGGGATGGTAGGGAGGGACTAGAATTTGGGACAGGAGGAAGGGGGGAGAGAGAATGAGAGCTTTACCTTGGCA
CCGGTGAGGAGATGCGACGGCGAACGGTAGATGCAGCGAGGACGACGAGATCCAAATGCGTCGCATCAGAGAAGAGAGCG
GCGGGGAGCGGGGGAAAATGCGAGCCGACAGGACCGGAAGACGAGACCTAGCTCGCGACTTTGCACGCGCGGGTGCAGGC
GCGGGCCTGGCTCGCGGAAACGGCCGATCCCTGCGTTTCCGCTCAGCCTGGCTGGGAGCCCAGTTTTGCATCCGTCGGGG
CTGGCCCAGTGAGACGTGCAGCCTACCAAACATGATGAAAATTGCATGATGGATGCGATGCAGGTGCAAGACAAGAAATC
AAACACGTCCATAGTTCACATCATGTAAGCTGCATCTCCTGACGCTGCGCAACGCTCCAACAGTGTCGTGGTGTTCCTCA
TGCTCTTCTATACTTCTGTATTTATTAAGAAAATGCAACAGCATAAGGGAGCAGTGAGATGAAGGTTCATTTGTTTGTTG
CAGAAAAGGACAGATCAATGTACTACATGATTTTTACACCAGCTATATACAATTATATGCACTTAATTAGTCATCCAATC
AAGCAACGCTAAACTGAAAATAAGCAATAAACTTCAGTCTTTATTTGTCACTATTAGAATTAATATTTAGCAACAGCAGC
AAACAAAATCAGCACTGATCTCCTAGAGCACTGCTTAAAATCAGATGAACAAATCTCGGTACTGCAAAATTATTATGAAA
AGATTTATAGAATGCATGTTCGTTGTATATATACGCACAATTAGAAAGATTTAAGCTAACGCGCTGTCAGCAACACAATG
GAATCCACATCTGCAAAATTTGCGCTGAGCTTTTCTAAAGATGCCGTTGCTCTTTTCAGATTCATCAATAATATATGATC
CACCAATGTAAAAATTGTAGCCATGTAGATCCCCAAATATATCTAATTAGTTGGAAAACTGTACAAAATTCTAACCGTA-
---GAGTAAAAAAGACAAACTCTAAGGTCTCTTGCACTAAAGGATCTCCTTGTACACTTGCCAAATTATTTCATTGCCGA
TTCTTCAGCTGTGATTAGAACTTTAAGTACATCTGTAATACACCAACATTTAAATGTAGCCTTGTAGATC-----
>chr3D_1876
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------------------------------------AACAGCATAAGGGAGCAATGAGATGAAAGTTAATTTGTTTGTTG
CAGAAAAGGACATATTAATGTACTACATGATATTTACACCAGCGATATACAATTATATGCGCTTAATTAGTCACCCAATC
AAGCAACGCTAAACTGAAAATAAGCAATAAACTTCAGTCCTTATTTGTCATTATTAGAATTAATATTTAGCAACAACAGC
GAACAAAATCAGCACTGATCTCCTAGAGCACTACTTAAAATCAGATGAACAAATCTCGGTACTGCAAAATTATTATGAAA
AGATGTATAGAATGCACGTTCGTTGTACATATACGCACAAT-AGAAAGATTTAAGCTAAAGCGCTGTCAGCAACACAATG
GAACCCACATCTGCAAAATTTGCGCTGAGCTTTTCTGAAGATGTCGTTGCTCTTTTCAGATTCGTCAATAATATATGATA
CACCAATGTAAAAATTGTAGCCATGTAGATCCCCAAATATATCTAATTAGTTTGAAAACCGTACAAAATTCTAACCGTA-
---GAGTAAAAAAGACAAACTCTAAGGTCTCTTGCACTAAAGGAACTCCTTGTACACTTGCCAAATTATTTCATTGT-GA
TTCTTCGGCTGTGATTAGAACTTTAAGTCCATCTGTAATACACCAACATTTAAATGTAGCCTTGTAGATC-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
----------------------------------S----------S-------S------------S--S----------
------S-S----------------------SSSSSSSS---------------------S----S--------------
--------------S----S-S-----S-------------------SS------------S------------------
------------------S-------------S----------------------------------------S------
-----------S----------------------------S--------------------S------------------
------------------------------------------------------------S--------------S----
---------------------S---------S---S--------------------------------------------
----------------------------------S--------------------------S--------S---------
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-------------------------------------------------S------------------------------
--------------------SS----------------------------------------------------------
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------------------------S---------------------------------------------S---------
------------------------S------------S--------------------------S--------SSS--SS
-SSS----SSSSSSSSS------------S-----------------------------S-----S------------S-
------S------S-----S-------S---------------------S-------S-S-----------S--------
S---S-S-----------S---------S----S-S-------S--------S---------------------S-----
-------------S---------S-S-----------------------S-----SS-S---------------------
------------SS---------------------------------SSSSSSSSSS------S-------S----S---
SSSS------------------------------S----S-----------------------S-----S----------
--------S-S--S------S--------SS--------SSSSSSSS---S---S-------------------------
-SS-----S------S-----------------------S-------------SS-------------------------
----------------------------------------------------S-------S-------S---S----S--
-----S-------------SSSSSSS---S-------------------------------------------SS-SSS-
SS------------------------------------------------------------------------------
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-------------------------S---S------S-----S-------------------SS-SS--S---------S
--------------------------------SS------S------------S--------------------------
---S------------S--------------------S---S------------------------S-------S-----
-S-S---------------------------S------------------------------------------------
-------------------------------------------------------------S---------S--------
S---------------------------------S--------------------------S-----------SS-----
------------------------------------S----------------------S--------------S-----
--------S---------------------------------S---------------S--------------------S
SSS-------S----SSS--------S-----------S-----------------------------------------
----------------------------------------------------------------------SSSSS
>forward_1369
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---------------------------------------------------------------------TAGAGAGTTGC
GGAGAGGGG-----------------------------------------------------------------------
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>reverse_3584
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---------------------------------------------------------------CGCAGTTGTGTTCCTCT
TGC-----------------------------------------------------------------------------
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