Multiple sequence alignment - TraesCS2D01G239400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G239400 chr2D 100.000 2213 0 0 1 2213 253815611 253813399 0.000000e+00 4087
1 TraesCS2D01G239400 chr2D 96.339 437 11 3 1782 2213 437853641 437854077 0.000000e+00 713
2 TraesCS2D01G239400 chr2D 85.526 684 93 5 773 1452 356534595 356533914 0.000000e+00 710
3 TraesCS2D01G239400 chr5B 93.363 1778 82 9 10 1781 261355472 261357219 0.000000e+00 2597
4 TraesCS2D01G239400 chr2A 93.420 1778 76 11 10 1781 78753851 78755593 0.000000e+00 2597
5 TraesCS2D01G239400 chr2A 87.054 672 74 8 1135 1802 583249500 583248838 0.000000e+00 747
6 TraesCS2D01G239400 chr6D 91.538 650 50 5 1135 1781 386109370 386110017 0.000000e+00 891
7 TraesCS2D01G239400 chr1B 90.432 648 50 5 1135 1781 163739281 163739917 0.000000e+00 843
8 TraesCS2D01G239400 chr1B 84.088 685 98 7 773 1452 84371110 84371788 0.000000e+00 651
9 TraesCS2D01G239400 chr6B 89.660 648 57 5 1135 1781 637476648 637477286 0.000000e+00 817
10 TraesCS2D01G239400 chr6B 93.443 122 8 0 10 131 707970556 707970677 4.850000e-42 182
11 TraesCS2D01G239400 chr4B 88.752 649 62 4 1135 1783 49943474 49944111 0.000000e+00 784
12 TraesCS2D01G239400 chr4B 87.855 387 34 7 397 774 53326561 53326943 2.020000e-120 442
13 TraesCS2D01G239400 chr4B 85.326 368 46 6 411 774 647662641 647663004 7.460000e-100 374
14 TraesCS2D01G239400 chr5A 91.549 568 43 2 724 1287 52407237 52406671 0.000000e+00 778
15 TraesCS2D01G239400 chr6A 88.462 650 63 5 1135 1781 307677039 307676399 0.000000e+00 774
16 TraesCS2D01G239400 chr3A 87.538 650 71 5 1135 1781 725701486 725700844 0.000000e+00 743
17 TraesCS2D01G239400 chr7D 85.962 691 87 3 766 1452 379613459 379614143 0.000000e+00 730
18 TraesCS2D01G239400 chr7D 95.843 433 14 3 1781 2213 128457022 128456594 0.000000e+00 697
19 TraesCS2D01G239400 chr7D 95.632 435 16 2 1782 2213 192964187 192963753 0.000000e+00 695
20 TraesCS2D01G239400 chr3D 85.673 684 91 6 773 1452 455015364 455014684 0.000000e+00 713
21 TraesCS2D01G239400 chr3D 95.652 437 12 4 1782 2213 118553396 118553830 0.000000e+00 695
22 TraesCS2D01G239400 chr3D 84.818 685 96 7 773 1452 549725857 549725176 0.000000e+00 682
23 TraesCS2D01G239400 chr5D 95.853 434 16 2 1781 2213 483059916 483060348 0.000000e+00 701
24 TraesCS2D01G239400 chr5D 95.853 434 13 4 1781 2213 77949204 77948775 0.000000e+00 697
25 TraesCS2D01G239400 chr5D 95.632 435 15 3 1782 2213 152800571 152801004 0.000000e+00 695
26 TraesCS2D01G239400 chr4D 95.853 434 15 2 1781 2213 109377817 109377386 0.000000e+00 699
27 TraesCS2D01G239400 chr4D 95.853 434 13 4 1781 2213 403565199 403565628 0.000000e+00 697
28 TraesCS2D01G239400 chr4D 85.564 665 91 4 773 1433 443715005 443714342 0.000000e+00 691
29 TraesCS2D01G239400 chr7A 84.348 115 10 5 25 131 629095433 629095319 3.010000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G239400 chr2D 253813399 253815611 2212 True 4087 4087 100.000 1 2213 1 chr2D.!!$R1 2212
1 TraesCS2D01G239400 chr2D 356533914 356534595 681 True 710 710 85.526 773 1452 1 chr2D.!!$R2 679
2 TraesCS2D01G239400 chr5B 261355472 261357219 1747 False 2597 2597 93.363 10 1781 1 chr5B.!!$F1 1771
3 TraesCS2D01G239400 chr2A 78753851 78755593 1742 False 2597 2597 93.420 10 1781 1 chr2A.!!$F1 1771
4 TraesCS2D01G239400 chr2A 583248838 583249500 662 True 747 747 87.054 1135 1802 1 chr2A.!!$R1 667
5 TraesCS2D01G239400 chr6D 386109370 386110017 647 False 891 891 91.538 1135 1781 1 chr6D.!!$F1 646
6 TraesCS2D01G239400 chr1B 163739281 163739917 636 False 843 843 90.432 1135 1781 1 chr1B.!!$F2 646
7 TraesCS2D01G239400 chr1B 84371110 84371788 678 False 651 651 84.088 773 1452 1 chr1B.!!$F1 679
8 TraesCS2D01G239400 chr6B 637476648 637477286 638 False 817 817 89.660 1135 1781 1 chr6B.!!$F1 646
9 TraesCS2D01G239400 chr4B 49943474 49944111 637 False 784 784 88.752 1135 1783 1 chr4B.!!$F1 648
10 TraesCS2D01G239400 chr5A 52406671 52407237 566 True 778 778 91.549 724 1287 1 chr5A.!!$R1 563
11 TraesCS2D01G239400 chr6A 307676399 307677039 640 True 774 774 88.462 1135 1781 1 chr6A.!!$R1 646
12 TraesCS2D01G239400 chr3A 725700844 725701486 642 True 743 743 87.538 1135 1781 1 chr3A.!!$R1 646
13 TraesCS2D01G239400 chr7D 379613459 379614143 684 False 730 730 85.962 766 1452 1 chr7D.!!$F1 686
14 TraesCS2D01G239400 chr3D 455014684 455015364 680 True 713 713 85.673 773 1452 1 chr3D.!!$R1 679
15 TraesCS2D01G239400 chr3D 549725176 549725857 681 True 682 682 84.818 773 1452 1 chr3D.!!$R2 679
16 TraesCS2D01G239400 chr4D 443714342 443715005 663 True 691 691 85.564 773 1433 1 chr4D.!!$R2 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 482 0.182775 GGACCACACCACCTTGTTCT 59.817 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2101 0.03213 AACTCGCTTGCTCACGAAGA 59.968 50.0 0.0 0.0 37.94 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 2.636617 GGAGGGGCTTGGGGGAATT 61.637 63.158 0.00 0.00 0.00 2.17
131 133 2.037136 CAAGGCGGCTGGTGAAGAG 61.037 63.158 14.21 0.00 0.00 2.85
163 165 2.490509 GTTTCCAAGTTAATCCCGTGGG 59.509 50.000 0.00 0.00 0.00 4.61
199 201 6.579865 ACCATATAGCAAGTACCAGTACAAC 58.420 40.000 10.41 0.00 38.48 3.32
222 224 9.849166 CAACATTTCCAATACGTTTAGGTATTT 57.151 29.630 0.00 0.00 40.24 1.40
277 280 9.422681 TCCCCCAAATAATTGTTTATAAATCGA 57.577 29.630 0.31 0.00 34.60 3.59
300 303 2.351726 GCACTATTCACCAACCGATGTC 59.648 50.000 0.00 0.00 0.00 3.06
321 324 3.574396 TCTCTGTACAGGTGGTCTTCTTG 59.426 47.826 22.48 0.00 0.00 3.02
330 333 5.726793 ACAGGTGGTCTTCTTGGTATAATCT 59.273 40.000 0.00 0.00 0.00 2.40
473 476 2.005606 TTGCATGGACCACACCACCT 62.006 55.000 0.00 0.00 43.03 4.00
479 482 0.182775 GGACCACACCACCTTGTTCT 59.817 55.000 0.00 0.00 0.00 3.01
536 539 2.046285 GGCCAAGGTGCGCATAACT 61.046 57.895 15.91 10.14 0.00 2.24
657 660 3.192422 TCGGAATTCGCAAACATCCAAAT 59.808 39.130 0.00 0.00 39.05 2.32
679 682 9.971922 CAAATGGGAAGGAAAAGATAATGTATC 57.028 33.333 0.00 0.00 35.41 2.24
680 683 9.713684 AAATGGGAAGGAAAAGATAATGTATCA 57.286 29.630 0.00 0.00 37.65 2.15
681 684 8.930846 ATGGGAAGGAAAAGATAATGTATCAG 57.069 34.615 0.00 0.00 37.65 2.90
682 685 7.872138 TGGGAAGGAAAAGATAATGTATCAGT 58.128 34.615 0.00 0.00 37.65 3.41
683 686 7.993183 TGGGAAGGAAAAGATAATGTATCAGTC 59.007 37.037 0.00 0.00 37.65 3.51
684 687 7.993183 GGGAAGGAAAAGATAATGTATCAGTCA 59.007 37.037 0.00 0.00 37.65 3.41
685 688 9.396022 GGAAGGAAAAGATAATGTATCAGTCAA 57.604 33.333 0.00 0.00 37.65 3.18
688 691 9.965902 AGGAAAAGATAATGTATCAGTCAAACT 57.034 29.630 0.00 0.00 37.65 2.66
743 746 4.582701 TTCATCGAGGCACAACAAAAAT 57.417 36.364 0.00 0.00 0.00 1.82
844 847 6.458210 TCACTACTATGTGTGCCATATGATG 58.542 40.000 3.65 0.00 38.90 3.07
879 882 2.161609 CAGACGGCAAAAGGATGGTAAC 59.838 50.000 0.00 0.00 0.00 2.50
907 910 7.754069 TTGCAATTACTTTGTTCTGTTTCAG 57.246 32.000 0.00 0.00 37.65 3.02
988 995 2.915869 TCCCTTTTCTAAGAGCTCCCA 58.084 47.619 10.93 0.00 32.92 4.37
992 999 4.203226 CCTTTTCTAAGAGCTCCCATTCC 58.797 47.826 10.93 0.00 32.92 3.01
1036 1043 3.580895 TGGTGAACTGCCAATCACTACTA 59.419 43.478 9.39 0.00 44.20 1.82
1091 1099 2.107366 CAAGGGTGTTGACAAAAGGGT 58.893 47.619 0.00 0.00 0.00 4.34
1190 1198 0.106769 TGCACTTTCAAGGGACTGCA 60.107 50.000 0.00 0.00 40.86 4.41
1323 1336 3.391296 TGTAATCACCTAAGGCCATCCTC 59.609 47.826 5.01 0.00 43.40 3.71
1359 1373 3.338249 GGTCATTTGCTGCTTAGACTGA 58.662 45.455 0.00 0.00 0.00 3.41
1488 1505 5.366829 GCTGCATGCAATATCATGAGTTA 57.633 39.130 22.88 0.00 44.94 2.24
1633 1653 8.379331 GTTTCCCCTATCAAGAATATTAGCTCT 58.621 37.037 0.00 0.00 0.00 4.09
1728 1748 6.624423 ACATATTTCAATGCACACTCTTTCC 58.376 36.000 0.00 0.00 0.00 3.13
1783 1803 1.359848 GCAACGGGTCATCTAGTGTG 58.640 55.000 0.00 0.00 0.00 3.82
1784 1804 1.067142 GCAACGGGTCATCTAGTGTGA 60.067 52.381 0.00 0.00 0.00 3.58
1787 1807 1.005569 ACGGGTCATCTAGTGTGAGGA 59.994 52.381 1.65 0.00 0.00 3.71
1790 1810 3.429547 CGGGTCATCTAGTGTGAGGAAAG 60.430 52.174 1.65 0.00 0.00 2.62
1792 1812 3.769844 GGTCATCTAGTGTGAGGAAAGGA 59.230 47.826 1.65 0.00 0.00 3.36
1793 1813 4.407296 GGTCATCTAGTGTGAGGAAAGGAT 59.593 45.833 1.65 0.00 0.00 3.24
1796 1816 5.901853 TCATCTAGTGTGAGGAAAGGATGAT 59.098 40.000 0.00 0.00 35.12 2.45
1798 1818 3.641434 AGTGTGAGGAAAGGATGATGG 57.359 47.619 0.00 0.00 0.00 3.51
1799 1819 3.184628 AGTGTGAGGAAAGGATGATGGA 58.815 45.455 0.00 0.00 0.00 3.41
1800 1820 3.199508 AGTGTGAGGAAAGGATGATGGAG 59.800 47.826 0.00 0.00 0.00 3.86
1801 1821 3.198635 GTGTGAGGAAAGGATGATGGAGA 59.801 47.826 0.00 0.00 0.00 3.71
1802 1822 3.198635 TGTGAGGAAAGGATGATGGAGAC 59.801 47.826 0.00 0.00 0.00 3.36
1803 1823 3.454082 GTGAGGAAAGGATGATGGAGACT 59.546 47.826 0.00 0.00 0.00 3.24
1804 1824 4.651503 GTGAGGAAAGGATGATGGAGACTA 59.348 45.833 0.00 0.00 0.00 2.59
1805 1825 5.306678 GTGAGGAAAGGATGATGGAGACTAT 59.693 44.000 0.00 0.00 0.00 2.12
1806 1826 5.306419 TGAGGAAAGGATGATGGAGACTATG 59.694 44.000 0.00 0.00 0.00 2.23
1807 1827 5.471424 AGGAAAGGATGATGGAGACTATGA 58.529 41.667 0.00 0.00 0.00 2.15
1808 1828 6.090186 AGGAAAGGATGATGGAGACTATGAT 58.910 40.000 0.00 0.00 0.00 2.45
1809 1829 6.561838 AGGAAAGGATGATGGAGACTATGATT 59.438 38.462 0.00 0.00 0.00 2.57
1810 1830 6.878389 GGAAAGGATGATGGAGACTATGATTC 59.122 42.308 0.00 0.00 0.00 2.52
1811 1831 6.371595 AAGGATGATGGAGACTATGATTCC 57.628 41.667 0.00 0.00 0.00 3.01
1812 1832 4.782156 AGGATGATGGAGACTATGATTCCC 59.218 45.833 0.00 0.00 0.00 3.97
1813 1833 4.080638 GGATGATGGAGACTATGATTCCCC 60.081 50.000 0.00 0.00 0.00 4.81
1814 1834 3.251484 TGATGGAGACTATGATTCCCCC 58.749 50.000 0.00 0.00 0.00 5.40
1815 1835 2.887454 TGGAGACTATGATTCCCCCA 57.113 50.000 0.00 0.00 0.00 4.96
1816 1836 3.367280 TGGAGACTATGATTCCCCCAT 57.633 47.619 0.00 0.00 0.00 4.00
1817 1837 4.502036 TGGAGACTATGATTCCCCCATA 57.498 45.455 0.00 0.00 0.00 2.74
1818 1838 4.838403 TGGAGACTATGATTCCCCCATAA 58.162 43.478 0.00 0.00 0.00 1.90
1819 1839 4.846367 TGGAGACTATGATTCCCCCATAAG 59.154 45.833 0.00 0.00 0.00 1.73
1820 1840 4.846940 GGAGACTATGATTCCCCCATAAGT 59.153 45.833 0.00 0.00 0.00 2.24
1821 1841 5.046231 GGAGACTATGATTCCCCCATAAGTC 60.046 48.000 0.00 0.00 31.93 3.01
1822 1842 5.476983 AGACTATGATTCCCCCATAAGTCA 58.523 41.667 0.00 0.00 32.92 3.41
1823 1843 5.545723 AGACTATGATTCCCCCATAAGTCAG 59.454 44.000 0.00 0.00 32.92 3.51
1824 1844 4.599241 ACTATGATTCCCCCATAAGTCAGG 59.401 45.833 0.00 0.00 0.00 3.86
1825 1845 3.144068 TGATTCCCCCATAAGTCAGGA 57.856 47.619 0.00 0.00 0.00 3.86
1826 1846 3.680169 TGATTCCCCCATAAGTCAGGAT 58.320 45.455 0.00 0.00 0.00 3.24
1827 1847 3.395607 TGATTCCCCCATAAGTCAGGATG 59.604 47.826 0.00 0.00 37.54 3.51
1838 1858 3.192799 TCAGGATGAGACTCCGGAC 57.807 57.895 0.00 0.00 42.56 4.79
1839 1859 0.748367 TCAGGATGAGACTCCGGACG 60.748 60.000 0.00 0.00 42.56 4.79
1840 1860 0.748367 CAGGATGAGACTCCGGACGA 60.748 60.000 0.00 0.00 39.69 4.20
1841 1861 0.034380 AGGATGAGACTCCGGACGAA 60.034 55.000 0.00 0.00 40.46 3.85
1842 1862 0.815734 GGATGAGACTCCGGACGAAA 59.184 55.000 0.00 0.00 0.00 3.46
1843 1863 1.203994 GGATGAGACTCCGGACGAAAA 59.796 52.381 0.00 0.00 0.00 2.29
1844 1864 2.353406 GGATGAGACTCCGGACGAAAAA 60.353 50.000 0.00 0.00 0.00 1.94
1917 1937 8.564509 AATGAATGAGAGAAAAAGAGAGAAGG 57.435 34.615 0.00 0.00 0.00 3.46
1918 1938 6.471146 TGAATGAGAGAAAAAGAGAGAAGGG 58.529 40.000 0.00 0.00 0.00 3.95
1919 1939 6.270927 TGAATGAGAGAAAAAGAGAGAAGGGA 59.729 38.462 0.00 0.00 0.00 4.20
1920 1940 5.476091 TGAGAGAAAAAGAGAGAAGGGAC 57.524 43.478 0.00 0.00 0.00 4.46
1921 1941 4.901849 TGAGAGAAAAAGAGAGAAGGGACA 59.098 41.667 0.00 0.00 0.00 4.02
1922 1942 5.366768 TGAGAGAAAAAGAGAGAAGGGACAA 59.633 40.000 0.00 0.00 0.00 3.18
1923 1943 6.043706 TGAGAGAAAAAGAGAGAAGGGACAAT 59.956 38.462 0.00 0.00 0.00 2.71
1924 1944 6.237154 AGAGAAAAAGAGAGAAGGGACAATG 58.763 40.000 0.00 0.00 0.00 2.82
1925 1945 5.946486 AGAAAAAGAGAGAAGGGACAATGT 58.054 37.500 0.00 0.00 0.00 2.71
1926 1946 6.368805 AGAAAAAGAGAGAAGGGACAATGTT 58.631 36.000 0.00 0.00 0.00 2.71
1927 1947 7.518188 AGAAAAAGAGAGAAGGGACAATGTTA 58.482 34.615 0.00 0.00 0.00 2.41
1928 1948 7.445707 AGAAAAAGAGAGAAGGGACAATGTTAC 59.554 37.037 0.00 0.00 0.00 2.50
1929 1949 6.441088 AAAGAGAGAAGGGACAATGTTACT 57.559 37.500 0.00 0.00 0.00 2.24
1930 1950 7.554959 AAAGAGAGAAGGGACAATGTTACTA 57.445 36.000 0.00 0.00 0.00 1.82
1931 1951 7.741554 AAGAGAGAAGGGACAATGTTACTAT 57.258 36.000 0.00 0.00 0.00 2.12
1932 1952 7.354751 AGAGAGAAGGGACAATGTTACTATC 57.645 40.000 0.00 0.00 0.00 2.08
1933 1953 6.325286 AGAGAGAAGGGACAATGTTACTATCC 59.675 42.308 0.00 0.00 0.00 2.59
1934 1954 6.206042 AGAGAAGGGACAATGTTACTATCCT 58.794 40.000 0.00 0.00 0.00 3.24
1935 1955 6.674419 AGAGAAGGGACAATGTTACTATCCTT 59.326 38.462 0.00 0.00 36.24 3.36
1936 1956 7.182930 AGAGAAGGGACAATGTTACTATCCTTT 59.817 37.037 0.00 0.00 34.00 3.11
1937 1957 7.699878 AGAAGGGACAATGTTACTATCCTTTT 58.300 34.615 0.00 0.00 34.00 2.27
1938 1958 8.170730 AGAAGGGACAATGTTACTATCCTTTTT 58.829 33.333 0.00 0.00 34.00 1.94
1939 1959 7.939784 AGGGACAATGTTACTATCCTTTTTC 57.060 36.000 0.00 0.00 0.00 2.29
1940 1960 6.890268 AGGGACAATGTTACTATCCTTTTTCC 59.110 38.462 0.00 0.00 0.00 3.13
1941 1961 6.661805 GGGACAATGTTACTATCCTTTTTCCA 59.338 38.462 0.00 0.00 0.00 3.53
1942 1962 7.362660 GGGACAATGTTACTATCCTTTTTCCAC 60.363 40.741 0.00 0.00 0.00 4.02
1943 1963 7.175990 GGACAATGTTACTATCCTTTTTCCACA 59.824 37.037 0.00 0.00 0.00 4.17
1944 1964 7.882179 ACAATGTTACTATCCTTTTTCCACAC 58.118 34.615 0.00 0.00 0.00 3.82
1945 1965 7.724061 ACAATGTTACTATCCTTTTTCCACACT 59.276 33.333 0.00 0.00 0.00 3.55
1946 1966 8.576442 CAATGTTACTATCCTTTTTCCACACTT 58.424 33.333 0.00 0.00 0.00 3.16
1947 1967 7.504924 TGTTACTATCCTTTTTCCACACTTG 57.495 36.000 0.00 0.00 0.00 3.16
1948 1968 7.057894 TGTTACTATCCTTTTTCCACACTTGT 58.942 34.615 0.00 0.00 0.00 3.16
1949 1969 7.012894 TGTTACTATCCTTTTTCCACACTTGTG 59.987 37.037 2.13 2.13 45.23 3.33
1950 1970 3.733443 ATCCTTTTTCCACACTTGTGC 57.267 42.857 3.68 0.00 44.34 4.57
1951 1971 2.733956 TCCTTTTTCCACACTTGTGCT 58.266 42.857 3.68 0.00 44.34 4.40
1952 1972 3.096092 TCCTTTTTCCACACTTGTGCTT 58.904 40.909 3.68 0.00 44.34 3.91
1953 1973 3.130340 TCCTTTTTCCACACTTGTGCTTC 59.870 43.478 3.68 0.00 44.34 3.86
1954 1974 3.119173 CCTTTTTCCACACTTGTGCTTCA 60.119 43.478 3.68 0.00 44.34 3.02
1955 1975 4.493547 CTTTTTCCACACTTGTGCTTCAA 58.506 39.130 3.68 0.00 44.34 2.69
1956 1976 4.527509 TTTTCCACACTTGTGCTTCAAA 57.472 36.364 3.68 0.00 44.34 2.69
1957 1977 3.781079 TTCCACACTTGTGCTTCAAAG 57.219 42.857 3.68 0.00 44.34 2.77
1958 1978 2.722094 TCCACACTTGTGCTTCAAAGT 58.278 42.857 3.68 0.00 44.34 2.66
1959 1979 3.879998 TCCACACTTGTGCTTCAAAGTA 58.120 40.909 3.68 0.00 44.34 2.24
1960 1980 3.876914 TCCACACTTGTGCTTCAAAGTAG 59.123 43.478 3.68 0.00 44.34 2.57
1961 1981 3.548818 CCACACTTGTGCTTCAAAGTAGC 60.549 47.826 3.68 0.00 44.34 3.58
1962 1982 3.065233 CACACTTGTGCTTCAAAGTAGCA 59.935 43.478 0.10 0.00 45.78 3.49
1968 1988 3.138884 TGCTTCAAAGTAGCACCATGA 57.861 42.857 0.00 0.00 43.30 3.07
1969 1989 3.689347 TGCTTCAAAGTAGCACCATGAT 58.311 40.909 0.00 0.00 43.30 2.45
1970 1990 4.842574 TGCTTCAAAGTAGCACCATGATA 58.157 39.130 0.00 0.00 43.30 2.15
1971 1991 5.439721 TGCTTCAAAGTAGCACCATGATAT 58.560 37.500 0.00 0.00 43.30 1.63
1972 1992 5.887598 TGCTTCAAAGTAGCACCATGATATT 59.112 36.000 0.00 0.00 43.30 1.28
1973 1993 6.038603 TGCTTCAAAGTAGCACCATGATATTC 59.961 38.462 0.00 0.00 43.30 1.75
1974 1994 6.038603 GCTTCAAAGTAGCACCATGATATTCA 59.961 38.462 0.00 0.00 38.51 2.57
1975 1995 7.255381 GCTTCAAAGTAGCACCATGATATTCAT 60.255 37.037 0.00 0.00 36.74 2.57
1997 2017 8.703378 TCATGATAGAGAGTCTCATATGTTGT 57.297 34.615 22.05 1.35 32.06 3.32
1998 2018 8.791675 TCATGATAGAGAGTCTCATATGTTGTC 58.208 37.037 22.05 8.46 32.06 3.18
1999 2019 8.574737 CATGATAGAGAGTCTCATATGTTGTCA 58.425 37.037 22.05 13.40 32.06 3.58
2000 2020 7.935520 TGATAGAGAGTCTCATATGTTGTCAC 58.064 38.462 22.05 4.75 32.06 3.67
2001 2021 7.777440 TGATAGAGAGTCTCATATGTTGTCACT 59.223 37.037 22.05 0.00 32.06 3.41
2002 2022 6.849085 AGAGAGTCTCATATGTTGTCACTT 57.151 37.500 22.05 0.00 32.06 3.16
2003 2023 7.238486 AGAGAGTCTCATATGTTGTCACTTT 57.762 36.000 22.05 0.00 32.06 2.66
2004 2024 7.319646 AGAGAGTCTCATATGTTGTCACTTTC 58.680 38.462 22.05 4.28 32.06 2.62
2005 2025 6.997655 AGAGTCTCATATGTTGTCACTTTCA 58.002 36.000 1.90 0.00 0.00 2.69
2006 2026 7.619050 AGAGTCTCATATGTTGTCACTTTCAT 58.381 34.615 1.90 0.00 0.00 2.57
2007 2027 8.753133 AGAGTCTCATATGTTGTCACTTTCATA 58.247 33.333 1.90 0.00 0.00 2.15
2008 2028 9.539825 GAGTCTCATATGTTGTCACTTTCATAT 57.460 33.333 1.90 0.00 34.95 1.78
2016 2036 8.948631 ATGTTGTCACTTTCATATACTAGTGG 57.051 34.615 5.39 0.00 38.75 4.00
2017 2037 7.327975 TGTTGTCACTTTCATATACTAGTGGG 58.672 38.462 5.39 0.00 38.75 4.61
2018 2038 7.179516 TGTTGTCACTTTCATATACTAGTGGGA 59.820 37.037 5.39 0.00 38.75 4.37
2019 2039 7.727578 TGTCACTTTCATATACTAGTGGGAA 57.272 36.000 5.39 1.17 38.75 3.97
2020 2040 8.319057 TGTCACTTTCATATACTAGTGGGAAT 57.681 34.615 5.39 0.00 38.75 3.01
2021 2041 8.768397 TGTCACTTTCATATACTAGTGGGAATT 58.232 33.333 5.39 0.00 38.75 2.17
2022 2042 9.614792 GTCACTTTCATATACTAGTGGGAATTT 57.385 33.333 5.39 0.00 38.75 1.82
2040 2060 8.691797 TGGGAATTTTACATTATAGAACTTGGC 58.308 33.333 0.00 0.00 0.00 4.52
2041 2061 8.914011 GGGAATTTTACATTATAGAACTTGGCT 58.086 33.333 0.00 0.00 0.00 4.75
2055 2075 7.338800 AGAACTTGGCTTGTATATTCCAATG 57.661 36.000 0.00 0.00 37.87 2.82
2056 2076 7.118723 AGAACTTGGCTTGTATATTCCAATGA 58.881 34.615 0.00 0.00 37.87 2.57
2057 2077 7.781693 AGAACTTGGCTTGTATATTCCAATGAT 59.218 33.333 0.00 0.00 37.87 2.45
2058 2078 7.281040 ACTTGGCTTGTATATTCCAATGATG 57.719 36.000 0.00 0.00 37.87 3.07
2068 2088 3.909587 CCAATGATGGGCTTCCTCA 57.090 52.632 0.00 0.00 43.51 3.86
2069 2089 2.148446 CCAATGATGGGCTTCCTCAA 57.852 50.000 0.00 0.00 43.51 3.02
2070 2090 2.459644 CCAATGATGGGCTTCCTCAAA 58.540 47.619 0.00 0.00 43.51 2.69
2071 2091 2.833338 CCAATGATGGGCTTCCTCAAAA 59.167 45.455 0.00 0.00 43.51 2.44
2072 2092 3.453353 CCAATGATGGGCTTCCTCAAAAT 59.547 43.478 0.00 0.00 43.51 1.82
2073 2093 4.439057 CAATGATGGGCTTCCTCAAAATG 58.561 43.478 0.00 0.00 0.00 2.32
2074 2094 1.826720 TGATGGGCTTCCTCAAAATGC 59.173 47.619 0.00 0.00 0.00 3.56
2075 2095 1.137675 GATGGGCTTCCTCAAAATGCC 59.862 52.381 0.00 0.00 42.56 4.40
2077 2097 2.982026 GGCTTCCTCAAAATGCCCT 58.018 52.632 0.00 0.00 37.81 5.19
2078 2098 2.143876 GGCTTCCTCAAAATGCCCTA 57.856 50.000 0.00 0.00 37.81 3.53
2079 2099 2.027385 GGCTTCCTCAAAATGCCCTAG 58.973 52.381 0.00 0.00 37.81 3.02
2080 2100 2.027385 GCTTCCTCAAAATGCCCTAGG 58.973 52.381 0.06 0.06 0.00 3.02
2081 2101 2.621668 GCTTCCTCAAAATGCCCTAGGT 60.622 50.000 8.29 0.00 0.00 3.08
2082 2102 3.282885 CTTCCTCAAAATGCCCTAGGTC 58.717 50.000 8.29 0.00 0.00 3.85
2083 2103 2.562296 TCCTCAAAATGCCCTAGGTCT 58.438 47.619 8.29 0.00 0.00 3.85
2084 2104 2.919602 TCCTCAAAATGCCCTAGGTCTT 59.080 45.455 8.29 0.00 0.00 3.01
2085 2105 3.054361 TCCTCAAAATGCCCTAGGTCTTC 60.054 47.826 8.29 0.00 0.00 2.87
2086 2106 2.939103 CTCAAAATGCCCTAGGTCTTCG 59.061 50.000 8.29 0.00 0.00 3.79
2087 2107 2.304761 TCAAAATGCCCTAGGTCTTCGT 59.695 45.455 8.29 0.00 0.00 3.85
2088 2108 2.403252 AAATGCCCTAGGTCTTCGTG 57.597 50.000 8.29 0.00 0.00 4.35
2089 2109 1.568504 AATGCCCTAGGTCTTCGTGA 58.431 50.000 8.29 0.00 0.00 4.35
2090 2110 1.115467 ATGCCCTAGGTCTTCGTGAG 58.885 55.000 8.29 0.00 0.00 3.51
2091 2111 1.142097 GCCCTAGGTCTTCGTGAGC 59.858 63.158 8.29 0.00 43.05 4.26
2092 2112 1.605058 GCCCTAGGTCTTCGTGAGCA 61.605 60.000 8.29 0.00 44.98 4.26
2093 2113 0.895530 CCCTAGGTCTTCGTGAGCAA 59.104 55.000 8.29 0.00 44.98 3.91
2094 2114 1.134965 CCCTAGGTCTTCGTGAGCAAG 60.135 57.143 8.29 0.00 44.98 4.01
2095 2115 1.634702 CTAGGTCTTCGTGAGCAAGC 58.365 55.000 11.43 0.00 44.98 4.01
2096 2116 0.109272 TAGGTCTTCGTGAGCAAGCG 60.109 55.000 11.43 0.00 44.98 4.68
2097 2117 1.372997 GGTCTTCGTGAGCAAGCGA 60.373 57.895 0.00 0.00 42.34 4.93
2098 2118 1.347817 GGTCTTCGTGAGCAAGCGAG 61.348 60.000 0.00 0.00 42.34 5.03
2099 2119 0.664767 GTCTTCGTGAGCAAGCGAGT 60.665 55.000 0.00 0.00 38.40 4.18
2100 2120 0.032130 TCTTCGTGAGCAAGCGAGTT 59.968 50.000 0.00 0.00 38.40 3.01
2101 2121 0.162507 CTTCGTGAGCAAGCGAGTTG 59.837 55.000 0.00 0.00 38.40 3.16
2102 2122 1.221466 TTCGTGAGCAAGCGAGTTGG 61.221 55.000 0.00 0.00 38.40 3.77
2103 2123 1.664649 CGTGAGCAAGCGAGTTGGA 60.665 57.895 0.00 0.00 36.56 3.53
2104 2124 1.016130 CGTGAGCAAGCGAGTTGGAT 61.016 55.000 0.00 0.00 36.56 3.41
2105 2125 0.723981 GTGAGCAAGCGAGTTGGATC 59.276 55.000 0.00 0.00 36.56 3.36
2106 2126 0.391661 TGAGCAAGCGAGTTGGATCC 60.392 55.000 4.20 4.20 36.56 3.36
2107 2127 0.391661 GAGCAAGCGAGTTGGATCCA 60.392 55.000 11.44 11.44 36.56 3.41
2108 2128 0.674895 AGCAAGCGAGTTGGATCCAC 60.675 55.000 15.91 10.06 36.56 4.02
2109 2129 0.955428 GCAAGCGAGTTGGATCCACA 60.955 55.000 15.91 2.99 36.56 4.17
2110 2130 0.798776 CAAGCGAGTTGGATCCACAC 59.201 55.000 15.91 15.54 31.82 3.82
2111 2131 0.321653 AAGCGAGTTGGATCCACACC 60.322 55.000 15.91 5.49 0.00 4.16
2112 2132 1.745489 GCGAGTTGGATCCACACCC 60.745 63.158 15.91 6.25 0.00 4.61
2113 2133 1.676968 CGAGTTGGATCCACACCCA 59.323 57.895 15.91 0.00 0.00 4.51
2114 2134 0.673644 CGAGTTGGATCCACACCCAC 60.674 60.000 15.91 9.87 31.11 4.61
2115 2135 0.693049 GAGTTGGATCCACACCCACT 59.307 55.000 15.91 15.12 36.35 4.00
2116 2136 1.073923 GAGTTGGATCCACACCCACTT 59.926 52.381 15.91 0.00 34.30 3.16
2117 2137 2.304761 GAGTTGGATCCACACCCACTTA 59.695 50.000 15.91 0.00 34.30 2.24
2118 2138 2.305927 AGTTGGATCCACACCCACTTAG 59.694 50.000 15.91 0.00 30.80 2.18
2119 2139 2.038863 TGGATCCACACCCACTTAGT 57.961 50.000 11.44 0.00 0.00 2.24
2120 2140 2.344592 TGGATCCACACCCACTTAGTT 58.655 47.619 11.44 0.00 0.00 2.24
2121 2141 2.714250 TGGATCCACACCCACTTAGTTT 59.286 45.455 11.44 0.00 0.00 2.66
2122 2142 3.244770 TGGATCCACACCCACTTAGTTTC 60.245 47.826 11.44 0.00 0.00 2.78
2123 2143 3.009143 GGATCCACACCCACTTAGTTTCT 59.991 47.826 6.95 0.00 0.00 2.52
2124 2144 4.506802 GGATCCACACCCACTTAGTTTCTT 60.507 45.833 6.95 0.00 0.00 2.52
2125 2145 4.513406 TCCACACCCACTTAGTTTCTTT 57.487 40.909 0.00 0.00 0.00 2.52
2126 2146 4.862371 TCCACACCCACTTAGTTTCTTTT 58.138 39.130 0.00 0.00 0.00 2.27
2127 2147 4.642885 TCCACACCCACTTAGTTTCTTTTG 59.357 41.667 0.00 0.00 0.00 2.44
2128 2148 4.401202 CCACACCCACTTAGTTTCTTTTGT 59.599 41.667 0.00 0.00 0.00 2.83
2129 2149 5.105513 CCACACCCACTTAGTTTCTTTTGTT 60.106 40.000 0.00 0.00 0.00 2.83
2130 2150 5.804979 CACACCCACTTAGTTTCTTTTGTTG 59.195 40.000 0.00 0.00 0.00 3.33
2131 2151 5.712917 ACACCCACTTAGTTTCTTTTGTTGA 59.287 36.000 0.00 0.00 0.00 3.18
2132 2152 6.127730 ACACCCACTTAGTTTCTTTTGTTGAG 60.128 38.462 0.00 0.00 0.00 3.02
2133 2153 5.163550 ACCCACTTAGTTTCTTTTGTTGAGC 60.164 40.000 0.00 0.00 0.00 4.26
2134 2154 5.067805 CCCACTTAGTTTCTTTTGTTGAGCT 59.932 40.000 0.00 0.00 0.00 4.09
2135 2155 6.405842 CCCACTTAGTTTCTTTTGTTGAGCTT 60.406 38.462 0.00 0.00 0.00 3.74
2136 2156 7.035612 CCACTTAGTTTCTTTTGTTGAGCTTT 58.964 34.615 0.00 0.00 0.00 3.51
2137 2157 7.220875 CCACTTAGTTTCTTTTGTTGAGCTTTC 59.779 37.037 0.00 0.00 0.00 2.62
2138 2158 7.754924 CACTTAGTTTCTTTTGTTGAGCTTTCA 59.245 33.333 0.00 0.00 0.00 2.69
2139 2159 8.470002 ACTTAGTTTCTTTTGTTGAGCTTTCAT 58.530 29.630 0.00 0.00 0.00 2.57
2140 2160 9.950680 CTTAGTTTCTTTTGTTGAGCTTTCATA 57.049 29.630 0.00 0.00 0.00 2.15
2141 2161 9.730420 TTAGTTTCTTTTGTTGAGCTTTCATAC 57.270 29.630 0.00 0.00 0.00 2.39
2142 2162 7.771183 AGTTTCTTTTGTTGAGCTTTCATACA 58.229 30.769 0.00 0.00 0.00 2.29
2143 2163 7.702348 AGTTTCTTTTGTTGAGCTTTCATACAC 59.298 33.333 0.00 0.00 0.00 2.90
2144 2164 6.942532 TCTTTTGTTGAGCTTTCATACACT 57.057 33.333 0.00 0.00 0.00 3.55
2145 2165 7.333528 TCTTTTGTTGAGCTTTCATACACTT 57.666 32.000 0.00 0.00 0.00 3.16
2146 2166 8.445275 TCTTTTGTTGAGCTTTCATACACTTA 57.555 30.769 0.00 0.00 0.00 2.24
2147 2167 9.066892 TCTTTTGTTGAGCTTTCATACACTTAT 57.933 29.630 0.00 0.00 0.00 1.73
2150 2170 7.539712 TGTTGAGCTTTCATACACTTATAGC 57.460 36.000 0.00 0.00 0.00 2.97
2151 2171 7.331026 TGTTGAGCTTTCATACACTTATAGCT 58.669 34.615 0.00 0.00 39.95 3.32
2155 2175 8.964420 GAGCTTTCATACACTTATAGCTCTAG 57.036 38.462 12.51 0.00 45.85 2.43
2156 2176 8.472007 AGCTTTCATACACTTATAGCTCTAGT 57.528 34.615 0.00 0.00 32.42 2.57
2157 2177 8.356657 AGCTTTCATACACTTATAGCTCTAGTG 58.643 37.037 16.77 16.77 43.72 2.74
2158 2178 7.115663 GCTTTCATACACTTATAGCTCTAGTGC 59.884 40.741 17.77 8.76 42.28 4.40
2159 2179 7.582667 TTCATACACTTATAGCTCTAGTGCA 57.417 36.000 18.36 9.43 42.28 4.57
2160 2180 7.767250 TCATACACTTATAGCTCTAGTGCAT 57.233 36.000 18.36 11.77 42.28 3.96
2161 2181 7.821652 TCATACACTTATAGCTCTAGTGCATC 58.178 38.462 18.36 0.00 42.28 3.91
2162 2182 5.461032 ACACTTATAGCTCTAGTGCATCC 57.539 43.478 18.36 0.00 42.28 3.51
2163 2183 4.895889 ACACTTATAGCTCTAGTGCATCCA 59.104 41.667 18.36 1.84 42.28 3.41
2164 2184 5.541868 ACACTTATAGCTCTAGTGCATCCAT 59.458 40.000 18.36 8.48 42.28 3.41
2165 2185 6.042552 ACACTTATAGCTCTAGTGCATCCATT 59.957 38.462 18.36 0.00 42.28 3.16
2166 2186 6.368243 CACTTATAGCTCTAGTGCATCCATTG 59.632 42.308 18.36 5.53 33.63 2.82
2183 2203 2.057137 TTGCATGGCAATCCCTACTC 57.943 50.000 0.00 0.00 43.99 2.59
2184 2204 0.918258 TGCATGGCAATCCCTACTCA 59.082 50.000 0.00 0.00 34.76 3.41
2185 2205 1.312815 GCATGGCAATCCCTACTCAC 58.687 55.000 0.00 0.00 0.00 3.51
2186 2206 1.133976 GCATGGCAATCCCTACTCACT 60.134 52.381 0.00 0.00 0.00 3.41
2187 2207 2.843701 CATGGCAATCCCTACTCACTC 58.156 52.381 0.00 0.00 0.00 3.51
2188 2208 1.951209 TGGCAATCCCTACTCACTCA 58.049 50.000 0.00 0.00 0.00 3.41
2189 2209 1.555075 TGGCAATCCCTACTCACTCAC 59.445 52.381 0.00 0.00 0.00 3.51
2190 2210 1.555075 GGCAATCCCTACTCACTCACA 59.445 52.381 0.00 0.00 0.00 3.58
2191 2211 2.171448 GGCAATCCCTACTCACTCACAT 59.829 50.000 0.00 0.00 0.00 3.21
2192 2212 3.370953 GGCAATCCCTACTCACTCACATT 60.371 47.826 0.00 0.00 0.00 2.71
2193 2213 3.624861 GCAATCCCTACTCACTCACATTG 59.375 47.826 0.00 0.00 0.00 2.82
2194 2214 4.623886 GCAATCCCTACTCACTCACATTGA 60.624 45.833 0.00 0.00 0.00 2.57
2195 2215 5.678583 CAATCCCTACTCACTCACATTGAT 58.321 41.667 0.00 0.00 0.00 2.57
2196 2216 6.686378 GCAATCCCTACTCACTCACATTGATA 60.686 42.308 0.00 0.00 0.00 2.15
2197 2217 7.448420 CAATCCCTACTCACTCACATTGATAT 58.552 38.462 0.00 0.00 0.00 1.63
2198 2218 6.656632 TCCCTACTCACTCACATTGATATC 57.343 41.667 0.00 0.00 0.00 1.63
2199 2219 6.377080 TCCCTACTCACTCACATTGATATCT 58.623 40.000 3.98 0.00 0.00 1.98
2200 2220 7.526918 TCCCTACTCACTCACATTGATATCTA 58.473 38.462 3.98 0.00 0.00 1.98
2201 2221 8.173412 TCCCTACTCACTCACATTGATATCTAT 58.827 37.037 3.98 0.00 0.00 1.98
2202 2222 8.811017 CCCTACTCACTCACATTGATATCTATT 58.189 37.037 3.98 0.00 0.00 1.73
2203 2223 9.636879 CCTACTCACTCACATTGATATCTATTG 57.363 37.037 3.98 4.18 0.00 1.90
2206 2226 9.708092 ACTCACTCACATTGATATCTATTGATG 57.292 33.333 3.98 3.78 34.32 3.07
2207 2227 9.152595 CTCACTCACATTGATATCTATTGATGG 57.847 37.037 3.98 4.91 34.32 3.51
2208 2228 8.098912 TCACTCACATTGATATCTATTGATGGG 58.901 37.037 3.98 3.29 34.32 4.00
2209 2229 6.883217 ACTCACATTGATATCTATTGATGGGC 59.117 38.462 3.98 0.00 34.32 5.36
2210 2230 6.781943 TCACATTGATATCTATTGATGGGCA 58.218 36.000 3.98 0.00 34.32 5.36
2211 2231 7.407729 TCACATTGATATCTATTGATGGGCAT 58.592 34.615 3.98 0.00 34.32 4.40
2212 2232 7.555195 TCACATTGATATCTATTGATGGGCATC 59.445 37.037 3.98 0.00 38.29 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.692756 CCCTCCTCCCTCTTCCCTTC 60.693 65.000 0.00 0.00 0.00 3.46
1 2 1.398234 CCCTCCTCCCTCTTCCCTT 59.602 63.158 0.00 0.00 0.00 3.95
2 3 2.652113 CCCCTCCTCCCTCTTCCCT 61.652 68.421 0.00 0.00 0.00 4.20
3 4 2.040359 CCCCTCCTCCCTCTTCCC 60.040 72.222 0.00 0.00 0.00 3.97
4 5 2.770475 GCCCCTCCTCCCTCTTCC 60.770 72.222 0.00 0.00 0.00 3.46
5 6 1.307430 AAGCCCCTCCTCCCTCTTC 60.307 63.158 0.00 0.00 0.00 2.87
6 7 1.617839 CAAGCCCCTCCTCCCTCTT 60.618 63.158 0.00 0.00 0.00 2.85
7 8 2.041928 CAAGCCCCTCCTCCCTCT 59.958 66.667 0.00 0.00 0.00 3.69
8 9 3.093172 CCAAGCCCCTCCTCCCTC 61.093 72.222 0.00 0.00 0.00 4.30
32 34 2.023673 CCAAGAAACAGACAGCCACAA 58.976 47.619 0.00 0.00 0.00 3.33
199 201 8.392612 ACGAAATACCTAAACGTATTGGAAATG 58.607 33.333 7.49 0.00 38.60 2.32
242 244 8.909423 AACAATTATTTGGGGGAGATAGAAAA 57.091 30.769 2.66 0.00 37.15 2.29
277 280 2.779755 TCGGTTGGTGAATAGTGCAT 57.220 45.000 0.00 0.00 0.00 3.96
300 303 3.306364 CCAAGAAGACCACCTGTACAGAG 60.306 52.174 24.68 15.90 0.00 3.35
321 324 8.738645 ATCTCAGTGGAAACAAAGATTATACC 57.261 34.615 0.00 0.00 46.06 2.73
330 333 9.354673 AGAAGAAATTATCTCAGTGGAAACAAA 57.645 29.630 0.00 0.00 39.15 2.83
454 457 1.530419 GGTGGTGTGGTCCATGCAA 60.530 57.895 0.00 0.00 39.81 4.08
558 561 3.938334 CGGTGTTGGATGATCACAATGTA 59.062 43.478 0.00 0.00 34.27 2.29
576 579 5.376854 ACCTCAAATTCTCAAATTCGGTG 57.623 39.130 0.00 0.00 33.93 4.94
657 660 7.872138 ACTGATACATTATCTTTTCCTTCCCA 58.128 34.615 0.00 0.00 36.17 4.37
688 691 9.877178 GGACAGAGAGAAATTCTAGTTTTGATA 57.123 33.333 0.00 0.00 35.87 2.15
689 692 8.601546 AGGACAGAGAGAAATTCTAGTTTTGAT 58.398 33.333 0.00 0.00 35.87 2.57
690 693 7.967908 AGGACAGAGAGAAATTCTAGTTTTGA 58.032 34.615 0.00 0.00 35.87 2.69
743 746 2.224744 TGTCTAGATTGCTGGTTTGGCA 60.225 45.455 0.00 0.00 37.97 4.92
844 847 2.414161 GCCGTCTGTAGCAAATGTTTCC 60.414 50.000 0.00 0.00 0.00 3.13
879 882 5.600696 ACAGAACAAAGTAATTGCAAAGGG 58.399 37.500 1.71 0.00 43.13 3.95
988 995 1.307878 TCATCCATGTGTGGGGGAAT 58.692 50.000 0.00 0.00 46.06 3.01
992 999 1.683943 GTCATCATCCATGTGTGGGG 58.316 55.000 0.00 0.00 46.06 4.96
1007 1014 0.405198 TGGCAGTTCACCATGGTCAT 59.595 50.000 16.53 0.00 30.29 3.06
1091 1099 1.007118 TCCAGCCTCTAGTGATGGTGA 59.993 52.381 15.53 0.00 38.15 4.02
1163 1171 4.037923 GTCCCTTGAAAGTGCATTTGAAGA 59.962 41.667 16.36 2.65 42.69 2.87
1190 1198 6.490381 TGCTTATATTGAGTAGACGATCAGGT 59.510 38.462 0.00 0.00 0.00 4.00
1222 1230 6.996282 GCTAAGTTATATAACAAGGGGCTCAA 59.004 38.462 24.05 0.77 38.62 3.02
1223 1231 6.100569 TGCTAAGTTATATAACAAGGGGCTCA 59.899 38.462 24.05 12.17 38.62 4.26
1323 1336 4.685169 AATGACCGACAGTTAAATGCAG 57.315 40.909 2.17 0.00 0.00 4.41
1359 1373 1.340088 TTCAAAGGCATGCCACACAT 58.660 45.000 37.18 14.94 40.66 3.21
1523 1542 5.122869 GCAGAGAACATGCAATAGACAAAGA 59.877 40.000 0.00 0.00 43.31 2.52
1656 1676 4.846779 AAACGCATAAGAGCCTTTTCAA 57.153 36.364 0.00 0.00 0.00 2.69
1694 1714 9.264719 TGTGCATTGAAATATGTAGATACAGAG 57.735 33.333 0.00 0.00 39.92 3.35
1728 1748 1.434622 CCGAGCAGCAGCCAAGTATG 61.435 60.000 0.00 0.00 43.56 2.39
1783 1803 5.541868 TCATAGTCTCCATCATCCTTTCCTC 59.458 44.000 0.00 0.00 0.00 3.71
1784 1804 5.471424 TCATAGTCTCCATCATCCTTTCCT 58.529 41.667 0.00 0.00 0.00 3.36
1787 1807 6.240118 GGGAATCATAGTCTCCATCATCCTTT 60.240 42.308 0.00 0.00 0.00 3.11
1790 1810 4.080638 GGGGAATCATAGTCTCCATCATCC 60.081 50.000 0.00 0.00 35.50 3.51
1792 1812 3.848975 GGGGGAATCATAGTCTCCATCAT 59.151 47.826 0.00 0.00 37.38 2.45
1793 1813 3.251484 GGGGGAATCATAGTCTCCATCA 58.749 50.000 0.00 0.00 37.38 3.07
1796 1816 2.887454 TGGGGGAATCATAGTCTCCA 57.113 50.000 0.00 0.00 37.38 3.86
1798 1818 5.544176 TGACTTATGGGGGAATCATAGTCTC 59.456 44.000 0.00 0.00 32.71 3.36
1799 1819 5.476983 TGACTTATGGGGGAATCATAGTCT 58.523 41.667 0.00 0.00 32.71 3.24
1800 1820 5.280215 CCTGACTTATGGGGGAATCATAGTC 60.280 48.000 0.00 0.00 32.46 2.59
1801 1821 4.599241 CCTGACTTATGGGGGAATCATAGT 59.401 45.833 0.00 0.00 0.00 2.12
1802 1822 4.846367 TCCTGACTTATGGGGGAATCATAG 59.154 45.833 0.00 0.00 0.00 2.23
1803 1823 4.838403 TCCTGACTTATGGGGGAATCATA 58.162 43.478 0.00 0.00 0.00 2.15
1804 1824 3.680169 TCCTGACTTATGGGGGAATCAT 58.320 45.455 0.00 0.00 0.00 2.45
1805 1825 3.144068 TCCTGACTTATGGGGGAATCA 57.856 47.619 0.00 0.00 0.00 2.57
1806 1826 3.652869 TCATCCTGACTTATGGGGGAATC 59.347 47.826 0.00 0.00 0.00 2.52
1807 1827 3.654806 CTCATCCTGACTTATGGGGGAAT 59.345 47.826 0.00 0.00 0.00 3.01
1808 1828 3.048600 CTCATCCTGACTTATGGGGGAA 58.951 50.000 0.00 0.00 0.00 3.97
1809 1829 2.250008 TCTCATCCTGACTTATGGGGGA 59.750 50.000 0.00 0.00 0.00 4.81
1810 1830 2.370189 GTCTCATCCTGACTTATGGGGG 59.630 54.545 0.00 0.00 0.00 5.40
1811 1831 3.312890 AGTCTCATCCTGACTTATGGGG 58.687 50.000 0.00 0.00 41.45 4.96
1812 1832 3.323403 GGAGTCTCATCCTGACTTATGGG 59.677 52.174 1.47 0.00 43.88 4.00
1813 1833 3.005261 CGGAGTCTCATCCTGACTTATGG 59.995 52.174 1.47 0.00 43.88 2.74
1814 1834 3.005261 CCGGAGTCTCATCCTGACTTATG 59.995 52.174 0.00 0.00 43.88 1.90
1815 1835 3.117474 TCCGGAGTCTCATCCTGACTTAT 60.117 47.826 0.00 0.00 43.88 1.73
1816 1836 2.241430 TCCGGAGTCTCATCCTGACTTA 59.759 50.000 0.00 0.00 43.88 2.24
1817 1837 1.006043 TCCGGAGTCTCATCCTGACTT 59.994 52.381 0.00 0.00 43.88 3.01
1818 1838 0.626382 TCCGGAGTCTCATCCTGACT 59.374 55.000 0.00 0.00 46.17 3.41
1819 1839 0.741915 GTCCGGAGTCTCATCCTGAC 59.258 60.000 3.06 2.24 43.47 3.51
1820 1840 0.748367 CGTCCGGAGTCTCATCCTGA 60.748 60.000 3.06 0.00 37.20 3.86
1821 1841 0.748367 TCGTCCGGAGTCTCATCCTG 60.748 60.000 3.06 0.00 37.20 3.86
1822 1842 0.034380 TTCGTCCGGAGTCTCATCCT 60.034 55.000 3.06 0.00 37.20 3.24
1823 1843 0.815734 TTTCGTCCGGAGTCTCATCC 59.184 55.000 3.06 0.00 35.88 3.51
1824 1844 2.649331 TTTTCGTCCGGAGTCTCATC 57.351 50.000 3.06 0.00 0.00 2.92
1891 1911 9.012161 CCTTCTCTCTTTTTCTCTCATTCATTT 57.988 33.333 0.00 0.00 0.00 2.32
1892 1912 7.611079 CCCTTCTCTCTTTTTCTCTCATTCATT 59.389 37.037 0.00 0.00 0.00 2.57
1893 1913 7.037730 TCCCTTCTCTCTTTTTCTCTCATTCAT 60.038 37.037 0.00 0.00 0.00 2.57
1894 1914 6.270927 TCCCTTCTCTCTTTTTCTCTCATTCA 59.729 38.462 0.00 0.00 0.00 2.57
1895 1915 6.593770 GTCCCTTCTCTCTTTTTCTCTCATTC 59.406 42.308 0.00 0.00 0.00 2.67
1896 1916 6.043706 TGTCCCTTCTCTCTTTTTCTCTCATT 59.956 38.462 0.00 0.00 0.00 2.57
1897 1917 5.545723 TGTCCCTTCTCTCTTTTTCTCTCAT 59.454 40.000 0.00 0.00 0.00 2.90
1898 1918 4.901849 TGTCCCTTCTCTCTTTTTCTCTCA 59.098 41.667 0.00 0.00 0.00 3.27
1899 1919 5.476091 TGTCCCTTCTCTCTTTTTCTCTC 57.524 43.478 0.00 0.00 0.00 3.20
1900 1920 5.896073 TTGTCCCTTCTCTCTTTTTCTCT 57.104 39.130 0.00 0.00 0.00 3.10
1901 1921 6.000840 ACATTGTCCCTTCTCTCTTTTTCTC 58.999 40.000 0.00 0.00 0.00 2.87
1902 1922 5.946486 ACATTGTCCCTTCTCTCTTTTTCT 58.054 37.500 0.00 0.00 0.00 2.52
1903 1923 6.641169 AACATTGTCCCTTCTCTCTTTTTC 57.359 37.500 0.00 0.00 0.00 2.29
1904 1924 7.290813 AGTAACATTGTCCCTTCTCTCTTTTT 58.709 34.615 0.00 0.00 0.00 1.94
1905 1925 6.842676 AGTAACATTGTCCCTTCTCTCTTTT 58.157 36.000 0.00 0.00 0.00 2.27
1906 1926 6.441088 AGTAACATTGTCCCTTCTCTCTTT 57.559 37.500 0.00 0.00 0.00 2.52
1907 1927 7.147637 GGATAGTAACATTGTCCCTTCTCTCTT 60.148 40.741 0.00 0.00 0.00 2.85
1908 1928 6.325286 GGATAGTAACATTGTCCCTTCTCTCT 59.675 42.308 0.00 0.00 0.00 3.10
1909 1929 6.325286 AGGATAGTAACATTGTCCCTTCTCTC 59.675 42.308 0.00 0.00 0.00 3.20
1910 1930 6.206042 AGGATAGTAACATTGTCCCTTCTCT 58.794 40.000 0.00 0.00 0.00 3.10
1911 1931 6.487299 AGGATAGTAACATTGTCCCTTCTC 57.513 41.667 0.00 0.00 0.00 2.87
1912 1932 6.893020 AAGGATAGTAACATTGTCCCTTCT 57.107 37.500 0.00 0.00 0.00 2.85
1913 1933 7.939784 AAAAGGATAGTAACATTGTCCCTTC 57.060 36.000 0.00 0.00 32.18 3.46
1914 1934 7.396339 GGAAAAAGGATAGTAACATTGTCCCTT 59.604 37.037 0.00 0.00 34.56 3.95
1915 1935 6.890268 GGAAAAAGGATAGTAACATTGTCCCT 59.110 38.462 0.00 0.00 0.00 4.20
1916 1936 6.661805 TGGAAAAAGGATAGTAACATTGTCCC 59.338 38.462 0.00 0.00 0.00 4.46
1917 1937 7.175990 TGTGGAAAAAGGATAGTAACATTGTCC 59.824 37.037 0.00 2.59 0.00 4.02
1918 1938 8.021396 GTGTGGAAAAAGGATAGTAACATTGTC 58.979 37.037 0.00 0.00 0.00 3.18
1919 1939 7.724061 AGTGTGGAAAAAGGATAGTAACATTGT 59.276 33.333 0.00 0.00 0.00 2.71
1920 1940 8.110860 AGTGTGGAAAAAGGATAGTAACATTG 57.889 34.615 0.00 0.00 0.00 2.82
1921 1941 8.576442 CAAGTGTGGAAAAAGGATAGTAACATT 58.424 33.333 0.00 0.00 0.00 2.71
1922 1942 7.724061 ACAAGTGTGGAAAAAGGATAGTAACAT 59.276 33.333 0.00 0.00 0.00 2.71
1923 1943 7.012894 CACAAGTGTGGAAAAAGGATAGTAACA 59.987 37.037 3.39 0.00 42.10 2.41
1924 1944 7.360361 CACAAGTGTGGAAAAAGGATAGTAAC 58.640 38.462 3.39 0.00 42.10 2.50
1925 1945 6.016610 GCACAAGTGTGGAAAAAGGATAGTAA 60.017 38.462 13.10 0.00 45.72 2.24
1926 1946 5.472137 GCACAAGTGTGGAAAAAGGATAGTA 59.528 40.000 13.10 0.00 45.72 1.82
1927 1947 4.278419 GCACAAGTGTGGAAAAAGGATAGT 59.722 41.667 13.10 0.00 45.72 2.12
1928 1948 4.520492 AGCACAAGTGTGGAAAAAGGATAG 59.480 41.667 13.10 0.00 45.72 2.08
1929 1949 4.469657 AGCACAAGTGTGGAAAAAGGATA 58.530 39.130 13.10 0.00 45.72 2.59
1930 1950 3.299503 AGCACAAGTGTGGAAAAAGGAT 58.700 40.909 13.10 0.00 45.72 3.24
1931 1951 2.733956 AGCACAAGTGTGGAAAAAGGA 58.266 42.857 13.10 0.00 45.72 3.36
1932 1952 3.119173 TGAAGCACAAGTGTGGAAAAAGG 60.119 43.478 13.10 0.00 45.72 3.11
1933 1953 4.108699 TGAAGCACAAGTGTGGAAAAAG 57.891 40.909 13.10 0.00 45.72 2.27
1934 1954 4.527509 TTGAAGCACAAGTGTGGAAAAA 57.472 36.364 13.10 0.00 45.72 1.94
1935 1955 4.021544 ACTTTGAAGCACAAGTGTGGAAAA 60.022 37.500 13.10 2.26 45.72 2.29
1936 1956 3.509575 ACTTTGAAGCACAAGTGTGGAAA 59.490 39.130 13.10 0.47 45.72 3.13
1937 1957 3.088532 ACTTTGAAGCACAAGTGTGGAA 58.911 40.909 13.10 0.00 45.72 3.53
1938 1958 2.722094 ACTTTGAAGCACAAGTGTGGA 58.278 42.857 13.10 0.00 45.72 4.02
1939 1959 3.548818 GCTACTTTGAAGCACAAGTGTGG 60.549 47.826 13.10 0.00 45.72 4.17
1940 1960 3.065233 TGCTACTTTGAAGCACAAGTGTG 59.935 43.478 7.08 7.08 44.78 3.82
1941 1961 3.278574 TGCTACTTTGAAGCACAAGTGT 58.721 40.909 1.79 0.00 44.78 3.55
1942 1962 3.969117 TGCTACTTTGAAGCACAAGTG 57.031 42.857 0.00 0.00 44.78 3.16
1949 1969 6.038603 TGAATATCATGGTGCTACTTTGAAGC 59.961 38.462 0.00 0.00 40.50 3.86
1950 1970 7.558161 TGAATATCATGGTGCTACTTTGAAG 57.442 36.000 0.00 0.00 0.00 3.02
1971 1991 9.140874 ACAACATATGAGACTCTCTATCATGAA 57.859 33.333 10.38 0.00 35.39 2.57
1972 1992 8.703378 ACAACATATGAGACTCTCTATCATGA 57.297 34.615 10.38 0.00 35.39 3.07
1973 1993 8.574737 TGACAACATATGAGACTCTCTATCATG 58.425 37.037 10.38 7.58 35.39 3.07
1974 1994 8.575589 GTGACAACATATGAGACTCTCTATCAT 58.424 37.037 10.38 0.00 37.44 2.45
1975 1995 7.777440 AGTGACAACATATGAGACTCTCTATCA 59.223 37.037 10.38 0.00 0.00 2.15
1976 1996 8.165239 AGTGACAACATATGAGACTCTCTATC 57.835 38.462 10.38 0.00 0.00 2.08
1977 1997 8.532186 AAGTGACAACATATGAGACTCTCTAT 57.468 34.615 10.38 2.73 0.00 1.98
1978 1998 7.946381 AAGTGACAACATATGAGACTCTCTA 57.054 36.000 10.38 0.00 0.00 2.43
1979 1999 6.849085 AAGTGACAACATATGAGACTCTCT 57.151 37.500 10.38 2.20 0.00 3.10
1980 2000 7.093354 TGAAAGTGACAACATATGAGACTCTC 58.907 38.462 10.38 0.00 0.00 3.20
1981 2001 6.997655 TGAAAGTGACAACATATGAGACTCT 58.002 36.000 10.38 5.61 0.00 3.24
1982 2002 7.840342 ATGAAAGTGACAACATATGAGACTC 57.160 36.000 10.38 0.00 0.00 3.36
1991 2011 7.987458 CCCACTAGTATATGAAAGTGACAACAT 59.013 37.037 12.27 0.00 41.47 2.71
1992 2012 7.179516 TCCCACTAGTATATGAAAGTGACAACA 59.820 37.037 12.27 0.00 41.47 3.33
1993 2013 7.553334 TCCCACTAGTATATGAAAGTGACAAC 58.447 38.462 12.27 0.00 41.47 3.32
1994 2014 7.727578 TCCCACTAGTATATGAAAGTGACAA 57.272 36.000 12.27 0.00 41.47 3.18
1995 2015 7.727578 TTCCCACTAGTATATGAAAGTGACA 57.272 36.000 12.27 0.00 41.47 3.58
1996 2016 9.614792 AAATTCCCACTAGTATATGAAAGTGAC 57.385 33.333 12.27 0.00 41.47 3.67
2014 2034 8.691797 GCCAAGTTCTATAATGTAAAATTCCCA 58.308 33.333 0.00 0.00 0.00 4.37
2015 2035 8.914011 AGCCAAGTTCTATAATGTAAAATTCCC 58.086 33.333 0.00 0.00 0.00 3.97
2029 2049 9.071276 CATTGGAATATACAAGCCAAGTTCTAT 57.929 33.333 0.00 0.00 43.01 1.98
2030 2050 8.271458 TCATTGGAATATACAAGCCAAGTTCTA 58.729 33.333 0.00 0.00 43.01 2.10
2031 2051 7.118723 TCATTGGAATATACAAGCCAAGTTCT 58.881 34.615 0.00 0.00 43.01 3.01
2032 2052 7.333528 TCATTGGAATATACAAGCCAAGTTC 57.666 36.000 0.00 0.00 43.01 3.01
2033 2053 7.201938 CCATCATTGGAATATACAAGCCAAGTT 60.202 37.037 0.00 0.00 46.92 2.66
2034 2054 6.266103 CCATCATTGGAATATACAAGCCAAGT 59.734 38.462 0.00 0.00 46.92 3.16
2035 2055 6.294899 CCCATCATTGGAATATACAAGCCAAG 60.295 42.308 0.00 0.00 46.92 3.61
2036 2056 5.539574 CCCATCATTGGAATATACAAGCCAA 59.460 40.000 0.00 0.00 46.92 4.52
2037 2057 5.078949 CCCATCATTGGAATATACAAGCCA 58.921 41.667 0.00 0.00 46.92 4.75
2038 2058 4.082026 GCCCATCATTGGAATATACAAGCC 60.082 45.833 0.00 0.00 46.92 4.35
2039 2059 4.768968 AGCCCATCATTGGAATATACAAGC 59.231 41.667 0.00 0.00 46.92 4.01
2040 2060 6.071728 GGAAGCCCATCATTGGAATATACAAG 60.072 42.308 0.00 0.00 46.92 3.16
2041 2061 5.774690 GGAAGCCCATCATTGGAATATACAA 59.225 40.000 0.00 0.00 46.92 2.41
2042 2062 5.074929 AGGAAGCCCATCATTGGAATATACA 59.925 40.000 0.00 0.00 46.92 2.29
2043 2063 5.574188 AGGAAGCCCATCATTGGAATATAC 58.426 41.667 0.00 0.00 46.92 1.47
2044 2064 5.312974 TGAGGAAGCCCATCATTGGAATATA 59.687 40.000 0.00 0.00 46.92 0.86
2045 2065 4.106825 TGAGGAAGCCCATCATTGGAATAT 59.893 41.667 0.00 0.00 46.92 1.28
2046 2066 3.462954 TGAGGAAGCCCATCATTGGAATA 59.537 43.478 0.00 0.00 46.92 1.75
2047 2067 2.245546 TGAGGAAGCCCATCATTGGAAT 59.754 45.455 0.00 0.00 46.92 3.01
2048 2068 1.640149 TGAGGAAGCCCATCATTGGAA 59.360 47.619 0.00 0.00 46.92 3.53
2049 2069 1.297968 TGAGGAAGCCCATCATTGGA 58.702 50.000 0.00 0.00 46.92 3.53
2050 2070 2.148446 TTGAGGAAGCCCATCATTGG 57.852 50.000 0.00 0.00 43.23 3.16
2051 2071 4.439057 CATTTTGAGGAAGCCCATCATTG 58.561 43.478 0.00 0.00 33.88 2.82
2052 2072 3.118519 GCATTTTGAGGAAGCCCATCATT 60.119 43.478 0.00 0.00 33.88 2.57
2053 2073 2.433239 GCATTTTGAGGAAGCCCATCAT 59.567 45.455 0.00 0.00 33.88 2.45
2054 2074 1.826720 GCATTTTGAGGAAGCCCATCA 59.173 47.619 0.00 0.00 33.88 3.07
2055 2075 1.137675 GGCATTTTGAGGAAGCCCATC 59.862 52.381 0.00 0.00 39.42 3.51
2056 2076 1.197812 GGCATTTTGAGGAAGCCCAT 58.802 50.000 0.00 0.00 39.42 4.00
2057 2077 2.669878 GGCATTTTGAGGAAGCCCA 58.330 52.632 0.00 0.00 39.42 5.36
2059 2079 2.027385 CTAGGGCATTTTGAGGAAGCC 58.973 52.381 0.00 0.00 44.48 4.35
2060 2080 2.027385 CCTAGGGCATTTTGAGGAAGC 58.973 52.381 0.00 0.00 0.00 3.86
2061 2081 3.054065 AGACCTAGGGCATTTTGAGGAAG 60.054 47.826 19.45 0.00 0.00 3.46
2062 2082 2.919602 AGACCTAGGGCATTTTGAGGAA 59.080 45.455 19.45 0.00 0.00 3.36
2063 2083 2.562296 AGACCTAGGGCATTTTGAGGA 58.438 47.619 19.45 0.00 0.00 3.71
2064 2084 3.282885 GAAGACCTAGGGCATTTTGAGG 58.717 50.000 19.45 0.00 0.00 3.86
2065 2085 2.939103 CGAAGACCTAGGGCATTTTGAG 59.061 50.000 19.45 0.00 0.00 3.02
2066 2086 2.304761 ACGAAGACCTAGGGCATTTTGA 59.695 45.455 19.45 0.00 0.00 2.69
2067 2087 2.420022 CACGAAGACCTAGGGCATTTTG 59.580 50.000 19.45 9.90 0.00 2.44
2068 2088 2.304761 TCACGAAGACCTAGGGCATTTT 59.695 45.455 19.45 1.40 0.00 1.82
2069 2089 1.906574 TCACGAAGACCTAGGGCATTT 59.093 47.619 19.45 2.31 0.00 2.32
2070 2090 1.482593 CTCACGAAGACCTAGGGCATT 59.517 52.381 19.45 8.30 0.00 3.56
2071 2091 1.115467 CTCACGAAGACCTAGGGCAT 58.885 55.000 19.45 3.99 0.00 4.40
2072 2092 1.605058 GCTCACGAAGACCTAGGGCA 61.605 60.000 19.45 0.00 0.00 5.36
2073 2093 1.142097 GCTCACGAAGACCTAGGGC 59.858 63.158 14.81 11.09 0.00 5.19
2074 2094 0.895530 TTGCTCACGAAGACCTAGGG 59.104 55.000 14.81 0.00 0.00 3.53
2075 2095 1.737363 GCTTGCTCACGAAGACCTAGG 60.737 57.143 7.41 7.41 0.00 3.02
2076 2096 1.634702 GCTTGCTCACGAAGACCTAG 58.365 55.000 0.00 0.00 0.00 3.02
2077 2097 0.109272 CGCTTGCTCACGAAGACCTA 60.109 55.000 0.00 0.00 0.00 3.08
2078 2098 1.373497 CGCTTGCTCACGAAGACCT 60.373 57.895 0.00 0.00 0.00 3.85
2079 2099 1.347817 CTCGCTTGCTCACGAAGACC 61.348 60.000 0.00 0.00 37.94 3.85
2080 2100 0.664767 ACTCGCTTGCTCACGAAGAC 60.665 55.000 0.00 0.00 37.94 3.01
2081 2101 0.032130 AACTCGCTTGCTCACGAAGA 59.968 50.000 0.00 0.00 37.94 2.87
2082 2102 0.162507 CAACTCGCTTGCTCACGAAG 59.837 55.000 0.00 0.00 37.94 3.79
2083 2103 1.221466 CCAACTCGCTTGCTCACGAA 61.221 55.000 0.00 0.00 37.94 3.85
2084 2104 1.664649 CCAACTCGCTTGCTCACGA 60.665 57.895 0.00 0.00 36.73 4.35
2085 2105 1.016130 ATCCAACTCGCTTGCTCACG 61.016 55.000 0.00 0.00 0.00 4.35
2086 2106 0.723981 GATCCAACTCGCTTGCTCAC 59.276 55.000 0.00 0.00 0.00 3.51
2087 2107 0.391661 GGATCCAACTCGCTTGCTCA 60.392 55.000 6.95 0.00 0.00 4.26
2088 2108 0.391661 TGGATCCAACTCGCTTGCTC 60.392 55.000 13.46 0.00 0.00 4.26
2089 2109 0.674895 GTGGATCCAACTCGCTTGCT 60.675 55.000 18.20 0.00 0.00 3.91
2090 2110 0.955428 TGTGGATCCAACTCGCTTGC 60.955 55.000 18.20 0.60 0.00 4.01
2091 2111 0.798776 GTGTGGATCCAACTCGCTTG 59.201 55.000 18.20 0.00 0.00 4.01
2092 2112 0.321653 GGTGTGGATCCAACTCGCTT 60.322 55.000 18.20 0.00 0.00 4.68
2093 2113 1.296715 GGTGTGGATCCAACTCGCT 59.703 57.895 18.20 0.00 0.00 4.93
2094 2114 1.745489 GGGTGTGGATCCAACTCGC 60.745 63.158 18.20 10.98 0.00 5.03
2095 2115 0.673644 GTGGGTGTGGATCCAACTCG 60.674 60.000 18.20 0.00 32.54 4.18
2096 2116 0.693049 AGTGGGTGTGGATCCAACTC 59.307 55.000 18.20 16.76 34.43 3.01
2097 2117 1.149101 AAGTGGGTGTGGATCCAACT 58.851 50.000 18.20 13.30 40.60 3.16
2098 2118 2.039879 ACTAAGTGGGTGTGGATCCAAC 59.960 50.000 18.20 16.15 32.54 3.77
2099 2119 2.344592 ACTAAGTGGGTGTGGATCCAA 58.655 47.619 18.20 4.13 32.54 3.53
2100 2120 2.038863 ACTAAGTGGGTGTGGATCCA 57.961 50.000 11.44 11.44 0.00 3.41
2101 2121 3.009143 AGAAACTAAGTGGGTGTGGATCC 59.991 47.826 4.20 4.20 0.00 3.36
2102 2122 4.287766 AGAAACTAAGTGGGTGTGGATC 57.712 45.455 0.00 0.00 0.00 3.36
2103 2123 4.724279 AAGAAACTAAGTGGGTGTGGAT 57.276 40.909 0.00 0.00 0.00 3.41
2104 2124 4.513406 AAAGAAACTAAGTGGGTGTGGA 57.487 40.909 0.00 0.00 0.00 4.02
2105 2125 4.401202 ACAAAAGAAACTAAGTGGGTGTGG 59.599 41.667 0.00 0.00 0.00 4.17
2106 2126 5.576447 ACAAAAGAAACTAAGTGGGTGTG 57.424 39.130 0.00 0.00 0.00 3.82
2107 2127 5.712917 TCAACAAAAGAAACTAAGTGGGTGT 59.287 36.000 0.00 0.00 0.00 4.16
2108 2128 6.202516 TCAACAAAAGAAACTAAGTGGGTG 57.797 37.500 0.00 0.00 0.00 4.61
2109 2129 5.163550 GCTCAACAAAAGAAACTAAGTGGGT 60.164 40.000 0.00 0.00 0.00 4.51
2110 2130 5.067805 AGCTCAACAAAAGAAACTAAGTGGG 59.932 40.000 0.00 0.00 0.00 4.61
2111 2131 6.136541 AGCTCAACAAAAGAAACTAAGTGG 57.863 37.500 0.00 0.00 0.00 4.00
2112 2132 7.754924 TGAAAGCTCAACAAAAGAAACTAAGTG 59.245 33.333 0.00 0.00 0.00 3.16
2113 2133 7.826690 TGAAAGCTCAACAAAAGAAACTAAGT 58.173 30.769 0.00 0.00 0.00 2.24
2114 2134 8.862550 ATGAAAGCTCAACAAAAGAAACTAAG 57.137 30.769 0.00 0.00 34.49 2.18
2115 2135 9.730420 GTATGAAAGCTCAACAAAAGAAACTAA 57.270 29.630 0.00 0.00 34.49 2.24
2116 2136 8.898761 TGTATGAAAGCTCAACAAAAGAAACTA 58.101 29.630 0.00 0.00 34.49 2.24
2117 2137 7.702348 GTGTATGAAAGCTCAACAAAAGAAACT 59.298 33.333 0.00 0.00 34.49 2.66
2118 2138 7.702348 AGTGTATGAAAGCTCAACAAAAGAAAC 59.298 33.333 0.00 0.00 34.49 2.78
2119 2139 7.771183 AGTGTATGAAAGCTCAACAAAAGAAA 58.229 30.769 0.00 0.00 34.49 2.52
2120 2140 7.333528 AGTGTATGAAAGCTCAACAAAAGAA 57.666 32.000 0.00 0.00 34.49 2.52
2121 2141 6.942532 AGTGTATGAAAGCTCAACAAAAGA 57.057 33.333 0.00 0.00 34.49 2.52
2124 2144 8.450964 GCTATAAGTGTATGAAAGCTCAACAAA 58.549 33.333 0.00 0.00 34.49 2.83
2125 2145 7.824289 AGCTATAAGTGTATGAAAGCTCAACAA 59.176 33.333 0.00 0.00 33.78 2.83
2126 2146 7.331026 AGCTATAAGTGTATGAAAGCTCAACA 58.669 34.615 0.00 0.00 33.78 3.33
2127 2147 7.778470 AGCTATAAGTGTATGAAAGCTCAAC 57.222 36.000 0.00 0.00 33.78 3.18
2131 2151 8.356657 CACTAGAGCTATAAGTGTATGAAAGCT 58.643 37.037 12.30 0.00 41.29 3.74
2132 2152 7.115663 GCACTAGAGCTATAAGTGTATGAAAGC 59.884 40.741 18.58 4.03 42.10 3.51
2133 2153 8.138074 TGCACTAGAGCTATAAGTGTATGAAAG 58.862 37.037 18.58 0.00 42.10 2.62
2134 2154 8.007405 TGCACTAGAGCTATAAGTGTATGAAA 57.993 34.615 18.58 2.46 42.10 2.69
2135 2155 7.582667 TGCACTAGAGCTATAAGTGTATGAA 57.417 36.000 18.58 3.70 42.10 2.57
2136 2156 7.094162 GGATGCACTAGAGCTATAAGTGTATGA 60.094 40.741 22.29 8.49 43.62 2.15
2137 2157 7.032580 GGATGCACTAGAGCTATAAGTGTATG 58.967 42.308 22.29 0.25 43.62 2.39
2138 2158 6.721668 TGGATGCACTAGAGCTATAAGTGTAT 59.278 38.462 19.29 19.29 45.40 2.29
2139 2159 6.068670 TGGATGCACTAGAGCTATAAGTGTA 58.931 40.000 18.58 16.00 42.10 2.90
2140 2160 4.895889 TGGATGCACTAGAGCTATAAGTGT 59.104 41.667 18.58 5.37 42.10 3.55
2141 2161 5.459536 TGGATGCACTAGAGCTATAAGTG 57.540 43.478 13.47 15.02 42.80 3.16
2142 2162 6.462500 CAATGGATGCACTAGAGCTATAAGT 58.538 40.000 13.47 0.00 34.99 2.24
2143 2163 6.964741 CAATGGATGCACTAGAGCTATAAG 57.035 41.667 13.47 0.00 34.99 1.73
2165 2185 0.918258 TGAGTAGGGATTGCCATGCA 59.082 50.000 0.00 0.00 32.65 3.96
2166 2186 1.133976 AGTGAGTAGGGATTGCCATGC 60.134 52.381 0.00 0.00 35.15 4.06
2167 2187 2.171237 TGAGTGAGTAGGGATTGCCATG 59.829 50.000 0.00 0.00 35.15 3.66
2168 2188 2.171448 GTGAGTGAGTAGGGATTGCCAT 59.829 50.000 0.00 0.00 35.15 4.40
2169 2189 1.555075 GTGAGTGAGTAGGGATTGCCA 59.445 52.381 0.00 0.00 35.15 4.92
2170 2190 1.555075 TGTGAGTGAGTAGGGATTGCC 59.445 52.381 0.00 0.00 0.00 4.52
2171 2191 3.550437 ATGTGAGTGAGTAGGGATTGC 57.450 47.619 0.00 0.00 0.00 3.56
2172 2192 5.089970 TCAATGTGAGTGAGTAGGGATTG 57.910 43.478 0.00 0.00 0.00 2.67
2173 2193 5.965033 ATCAATGTGAGTGAGTAGGGATT 57.035 39.130 0.00 0.00 0.00 3.01
2174 2194 7.015680 AGATATCAATGTGAGTGAGTAGGGAT 58.984 38.462 5.32 0.00 0.00 3.85
2175 2195 6.377080 AGATATCAATGTGAGTGAGTAGGGA 58.623 40.000 5.32 0.00 0.00 4.20
2176 2196 6.662865 AGATATCAATGTGAGTGAGTAGGG 57.337 41.667 5.32 0.00 0.00 3.53
2177 2197 9.636879 CAATAGATATCAATGTGAGTGAGTAGG 57.363 37.037 5.32 0.00 0.00 3.18
2180 2200 9.708092 CATCAATAGATATCAATGTGAGTGAGT 57.292 33.333 5.32 0.00 31.88 3.41
2181 2201 9.152595 CCATCAATAGATATCAATGTGAGTGAG 57.847 37.037 5.32 0.00 31.88 3.51
2182 2202 8.098912 CCCATCAATAGATATCAATGTGAGTGA 58.901 37.037 5.32 0.00 31.88 3.41
2183 2203 7.148289 GCCCATCAATAGATATCAATGTGAGTG 60.148 40.741 5.32 4.23 31.88 3.51
2184 2204 6.883217 GCCCATCAATAGATATCAATGTGAGT 59.117 38.462 5.32 0.00 31.88 3.41
2185 2205 6.882678 TGCCCATCAATAGATATCAATGTGAG 59.117 38.462 5.32 0.00 31.88 3.51
2186 2206 6.781943 TGCCCATCAATAGATATCAATGTGA 58.218 36.000 5.32 3.45 31.88 3.58
2187 2207 7.640597 ATGCCCATCAATAGATATCAATGTG 57.359 36.000 5.32 0.00 31.88 3.21
2188 2208 7.876936 GATGCCCATCAATAGATATCAATGT 57.123 36.000 5.32 0.00 37.74 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.