>input_sequence_86795
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATGGATGATGACCATGGTGAACTGCCAATCACTA
CTATAGACGGAACTAC-CGCTGTCACAGCCTGCTTTATCAAGGGTGTTGACAAAAGGGTCACCATCACTAGAGGCTGGAG
CGACTTCTTCCGTCAGGCGCACATGGAGAAAGGTCAAGCATATGCTTTCGTCTTCAAATGCACTTTCAAGGGACTGCACC
TGATCGTCTACTCAATATAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr2D_1_TraesCS2D01G239400
GAAGGGAAGAGGGAGGAGGGGCTTGGGGG-AATTTGTGGCTGTCTGTTTCTTGGCTGGAGATAAGAGAAAGGGAGGGCGG
TGTGAGGACCCCACAGAGGCACGTGGCGCACAAACAAGGCGGCTGGTGAAGAGCTATATATTTGTTTCCAAGTTAATCCC
GTGGGCTATTTTGTTAACCATATAGCAAGTACCAGTACAACATTTCCAATACGTTTAGGTATTTCGTGTAATGATTTAAT
TCATTTTCTATCTCCCCCAAATAATTGTTTATAAA-TCGATGCACTATTCACCAACCGATGTCTCTGTACAGGTGGTCTT
CTTGGTATAATCTTTGTTTCCACTGAGATAATTTCTTCTATATACAGTTATTTTAGTATCATAAATCATTCGGTGGATTA
TGAAAGTTTTCCATTTACAATATAAGCATAAGATTTTATTTCTCAAAATATAGGAGTTGCATGGACCACACCACCTTGTT
CTATTTCATCAAAGAAACAAGAGTTTTACAGCGGGTAAGAGGCCAAGGTGCGCATAACTATAAGTAGCTGAAGATAAAAA
TACATTGTGATCATCCAACACCGAATTTGAGAATTTGAGGTTCACTAAATTGAGCATTTGTTTCTTCATTGGACAGGTCG
GAATTCGCAAACATCCAAATGGGAAGGAAAAGATAATGTATCAGTCAAACTATCAAAACTAGAATTTCTCTCTGTCCTTT
TGTTTTCATCGAGGCACAACAAAAATGCCAAACCAGCAATCTAGACAACAATATTAATGTTCGTAGACTGCGAAAGATCA
TCCACAGCACCACCACACCTAATCACTACTATGTGTGCCATATGATGGAAACATTTGCTACAGACGGCAAAAGGATGGTA
ACCCTTTGCAATTACTTTGTTCTGTTTCAG----TGACATCGTATAAAATGATATACTAACTAACCTTTACTGTCATTTT
TAGTACTTTGGGGTTCCCTTTTCTAAGAGCTCCCATTCCCCCACACATGGATGATGACCATGGTGAACTGCCAATCACTA
CTATAGACGGAACTAC-CGCTGTCACAGCCTGCTTTATCAAGGGTGTTGACAAAAGGGTCACCATCACTAGAGGCTGGAG
CGACTTCTTCCGTCAGGCGCACATGGAGAAAGGTCAAGCATATGCTTTCGTCTTCAAATGCACTTTCAAGGGACTGCACC
TGATCGTCTACTCAATATAAGCAAGTTGCTTGAGCCCCTTGTTATATAACTTAGCATT-AGTATAG--ATGCCTACTAAG
ACTTCTATGTTTATCATCATTTTGAA-TCTTATGTAATCACCTAAGGCC-ATCCTCTGCATTTAAC-TGTCGGTCATTTG
CTGCTTAGACTGATGTGTGGCATGCCTTTGAAACGGCTATGCTAAAAGAAATATAATCTTTTGCCTTCAAATGCACGTCC
AAAGGCCTATGCATAATTGTCTATCACTATCGCTTGCTTGCTGCATGCAAT---ATCATGAGTTATGCTTTGGAAGCAGC
ATTAC-TTTAAAAAAAT-GTTTCTTTGTCTATTGCATGTTCTCTGCTCATTGCAGGTATGCAAGCTTTG-CTTTTTGAAA
CTCTTGGTGTAAAGAAAAATATTTTTGTTTCCCCTATCAAGAATATTAGCTCTAATAAGTCTAGATGTATGCCAATTGAA
AAGGCTCTTATGCGTTTATTTTCATATGTTTCACTCTGTATCTACATATTTCAATGCACACTCTTTCCATACTTGGCTGC
TGCTCGGCCTTTGCGCCATGGGCGCAACGGGTCATCTAGTGTGAGGAAAGGATGATGGAGACTATGATTCCCCCATAAGT
CAGGATGAGACTCCGGACGAAAAAAAAATGAAAAGAAAAAAAGAGGCCAAAAAAAAGAGAAGGCCCAAAAAAATGAATGA
GAGAAAAAGAGAGAAGGGACAATGTTACTATCCTTTTTCCACACTTGTGCTTCAAAGTAGCACCATGATATTCATGATAG
AGAGTCTCATATGTTGTCACTTTCATATACTAGTGGGAATTTTACATTATAGAACTTGGCTTGTATATTCCAATGATGGG
CTTCCTCAAAATGCCCTAGGTCTTCGTGAGCAAGCGAGTTGGATCCACACCCACTTAGTTTCTTTTGTTGAGCTTTCATA
CACTTATAGCTCTAGTGCATCCATTGCATGGCAATCCCTACTCACTCACATTGATATCTATTGATGGGCATC
>chr5B_10
---------AGGGAGGAGGGGCTTGGGGGGAATATGTGGTTGTCTGTTTCTTGGCTGGAGATAAGAGAAAGGGAGGGCGG
TGTGAGGACCCCACAGAGGCACGTGGCGCACAAACAAGGCGGCTGGTGAAGAACTATATATTTGTTTCCAAGTTAATCCC
GTGGACTATTTTGTTAACCATATAGCAAGTACCAGTACAATATTTCCAATACGTTTAGGTATTCCGTGTAATGATTTAGT
TCACTTTCTATCTCCTCCAAATAATTGTTTATAAAATCGGTGCACTATTCACCAACCGATGTGTCTGTACAGGTGGTCTT
CTTAGTATAATCGTTGTTTCCACTGAGATAATTTCTTCTATATATAGTTATTTTAGTATCATAAATCATTCGGTGGATTA
TAAAAGTTTTCCATTTACAATATAAGCATAAGATTTTATTTCTCAAAATATAGGAGCTGCATGGACCACACCACCCTGTT
CCATTTCATCAAAGAAACAAGAGTTTTACAGCGGGTAAGAGGCCAAGGTGCGCATAACCATAAGTAGCTGAAGATAAAAA
CACATTGTGATCATCCAAAACCGAATTTGAGAATTTGAGGTTCACTAAATTGAGCATTTGTTTCTTCATTGGACAGGTCG
GAATTCGCAAACATCCAAAAGGGAAGGAAAAGATAATGTAT------------CAAAACTAGAATTTCTCTCTGTCCTTT
TGTTTTCATCGAGGCACGACAAAAACTCCAAACCAGCAATCTAGACAACAATATTAATGTTCGTAGACTGCAAAAGATCA
TCCACGACACCACCACACCTAATCACTACTATGTGTGCCATATGATAGAAACATTTGCTACAGACGACAGAAGGATGGTA
ATCCTTTGCCATTACTTTGTTCTGTATCATACAATGACATCGTATAAAATGATATACTAACTAACCTTTACTGTCATTTT
CAGTACTTTGGGGTTCCCTTTTCTAAGAGCTCCCTTTC-CCCATACATGGATGCTGACCATGGTGAACTGCCAATCACTA
CTGTAGATGGAACTAC-CACTATCACAGCCCGCTTTATCAAGGGTGTTGACAAAAGGGCCACCATCACTAGAGGCTGGAG
CGACTTCTTCCGTCAGGCGCACATGGAGAAAGGTCAAGCATATGTTTTCGCCTTCAAATGCACTTTCAAGGGACTGGGCC
TGACTGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCATT-AATATAG--ATGCCTACTAAG
ACTTCTATGTTTATCATCATTTTAAA-TCTTATGTAATCACCTAAGATC-ATCTTGTGCATTTAAC-TG-CAGTCATTTG
C----------------TGGCATGCCTTTGAAATGGCTATGCTGAAAGAAACATAAGCTTTTGCCTTCAAATGCACGTCC
AAAGGCCTATGCATAATTGTCTATCACTATTATTTGCTTGCTGCATGCAAT---ATCATGAGCTGTGCTTTGGAAGCAAC
ATTAC-TTTAAAAAAAT-GTTCCTTTGTCTATTGCATGTTCTCTGCTCATTGCAGGTATGCAAGCTTTG-CTTTTTAAAA
CTCTTAGTGTAAAGAAAAATATTGTTGTTTCCCCTATCAAGAATATTAGCTCGAATAAGTCCAGATGTATGCCAAGTGAA
AAGGCTCTTATGTGTTTATTTTCATATGTTTCATTCTATATTTACATATTTCAATGCACACTCTTTCAATACTTGGCTGC
TACTCGGCCTTTGCGCCATGGGCGCAACGGGTCATCTAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr2A_10
---------AGGGAGGAGGGGCTTGGGGG-AATATGTGGCTGTCTGTTTCTTGGCTGGAGATAAGAGAAAGGGAGGGCGG
TGTGAGGACCCCACAGAAGCACGTGGCGCACAAACAAGGCGGCTGGTGAAGAACTATATATTTGTTTCCAAGTTAATCCC
GTGGACCATTTTGTTAACCATATAGCAAGTACCAGTACAATATTTTCAATACGTTTAGGTATTCCGTGTAATGATTTAAT
TCACTTTCTATCT---CCAAATAATTGTTTATAAA-TCGGTGCACTATTCACCAACCGATGTGTCTGTACAGGTGGTCTT
CTTAGTATAATCGTTGTTTCCACTGAGATAATTTCTTCTATATACAGTAATTTTAGTATCATAAATCATTCGGCGGATTA
TAAAAGTTTTCCATTTACAATATAAGCATAAGATTTTATTTCTCAAAATATAGGAGCTGCATGGACCACACCACCCTGTT
CCATTTCATCAAAGAAACAAGAGTTTTACAACGGGTAAGAGGCCAAGGTGCGCATAACCATAAGTAGCTGAAGATAAAAA
CACATTGTGATCATCCAAAACCGAATTTGAGAATTTGAGGTTCACGAAATTGAGCATTTGTTTCTTCATTGGACAGGTCG
GAAT-CGCAAACATCCAAAAGGGAAGGAAAAGATAATGTAT------------CAAAACTAGAATTTCTCTCTGTCCTTT
TGTTTTGATCGAGGCACAACAAAAACTTCAAACCAGCAATCTAGACAACAATATTAATGTTCGTAGACTGCGAAAGATCA
TCCACAGCACCACCACACTTAATCACTACTATGTGTGCCATATGATAGAAACATTTGCTACAGACGACAAAAGGATGGTA
ATCCTTTGCAATTACTTTGTTCTGTATCATACAATGACATCGTATAAAATGATATACTAACTAACCTTTACTGTCATTTT
CAGTACTTTGGGGTTCCCTTTTCTAAGAGCTCCCTTTC-CCCATACACAGATGCTGACCATGGTGAACTGCCAATCACTA
CTGTAGATGGAACTAC-CGCTATCACAGCCCGCTTTATCAAGGGTGTTGACAAATGGGCCACCATCACTAGAGGCTGGAG
CGACTTCTTTCGTCAGGCGCACATGGAGAAAGGTCAAGCATATGCTTTCGCCTTCAAATGCACTTTTAAGGGACTGTGCC
TGACTGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCATT-AATATAG--ATGCCTACTAAG
ACTTCTATGTTTATCATCATTTTAAA-TCTTATGTAATCACCTAAGACC-AGCCTGTGCATTTAAC-TG-CGGTCATTTG
C----------------TGGCATGCCTTTGAAACGGCTATGCTGAAAGAAATATAAGCTTTTGCCTTCAAATGCACGTCC
AAAGGCCTATGCATAATTGTCTAGCACTATCGTTTGCTTGCTGCATGCAAT---ATCATGAGCTGTGCTTTGGAAGCAAC
ATTACTTTTAAAAAAAT-GTTCCTTTGTCTATTGCATGTTCTCTGCTCATTGCAGGTATGCAAGCTTTG-CTTTTTGAAA
CTCTTAGTGTAAAGAAAAATATTGTTGTTTCCCCTATCAAGAATATTAGCTCGAATAAGTCCAGATGTATGCCAAGTGAA
AAGGCTCTTATGTGTTTATTTTCATATGTTTCATTCTGTATTTACATATTTCAATGCACACTCTTTCAATACTTGGCTGC
TGCTCGGCCTTTGCGTCATGGGCGCAACGGGTCATCTAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr5A_724
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TCATCTAGACACAACAAAAGCGCCAAACCATCAACCTAGACAACAATATTAATGTTCGTAGACTGCGAAAGATCA
TCCAGAACACCACCACATCTAATCACTAGTATGTCTGTCACATGATAGAAACATTTGCTACAGACGGCAAAAGGATGGTA
ATCCTTTGCAATTACTTTGTTTTGTTTCATACAATGACATCGTATAAAATGATATACTAACTAACCTTTACTTTCATTTT
CAGTATTTTGGGGTTCCCTTTTCTAAGAGCTCCCTTTT-CTCACACATGGATGCTGACCATGGTGAACTGCCAATCACTA
CTGGAGACGGAACTAC-CGCTGTCACAGCCTGCTTTATCATGGGTGTTGACAAAAGGGCCACCATCACTAGAGGCTGGAG
TGACTTCTTTCGTCAGGCGCACATGAAGAAAGGTCAAGCATATGCTTTCGACTTTAAATGCACTTCCAAGAGACTGCGCC
TGATCGTCTACTCAATATAAACAAGTTGCAAGAGTCCCTTGTTATATAACCTAGCATT-AGTAGAG--ATGTCTACTAAG
ACTTCTATGTTTATCAT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr7D_766
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACAATCATAATGTTCTTAGACTGTGAAAGATCA
TCCACAACATCACCACGCCTGATCGCTACTATGTGTGCCACATGACAGAAACATTTGCAACAGACATCAAAAGAATGGTA
ATCCTTTGCAATTGCTATGTTCTGTTTCATACAATGACATGGTATAAAATGATATACTAACTAACCTTTACTGTTATTTT
CAGTACTTTACGGTTCCCTTTTCTATGGGTTCCCTTTT-CCCACACATGGATGGTGATCAGGGTGAACTGCCAATCACTA
TTGGAGATGGAACTAC-TGCTATCACATCCAGCTTTATCAAAGGTGTTGACAAAAGGGCCACCATCACTAGAGGCTGGAG
CGACTTCTTCCATCGGGCACACATGAACAAAGGGCAAGCATATGCTTTTGCCTTCAAATGCACTTCCAAGGGATTGTGCC
TGATCGTCTAC-----ATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCATT-AGTATAG--ATGCCTACCAAG
ACTTCTATGTTTATCATCCTTTTGGA-TCTTATGTAATCACCTGAGACC-ATCATGTGCGTTTAAC-TATCGGTTATTTG
TTGCTTAGACTGTTGTGTGGTATGCTTTTCAAATAGCCATGATGAAAGAAATATATGCTTTCGCCTTGAAGTGCATGTTC
AAAGGCCTCTGCATGATTATCTATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr2D_773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAATGTCCGTACACTGCGAAAGATCA
TCCGCAGCACCACCACGCCTGATAACTACTATGTGTGCCACATGACAGAAACATTTGCAACACAAGGCAAAAGAATGGTA
GTCCTTTGCAATTACTCTGTCCGGTTTCATATAATAGCATGGTATAAAATGATATAGTGACTAACCTTTACTATTATTTT
CAGTACTTTAGCGTTCCTTTTTCTAGGGGTTCCA-TTT-CCCACACATGGATGCTGACCATGGTGAACTGCCAATCACTA
CTGGAGACGGAACTGC-CGCTGTCACGGCCCGCTTTATCAAGGGTGTTCACAAAAGGGCAACCATCACTGAAGGCTGGAG
CGACTTCTTCCGTCAGGCACACATGAACGAAGGGCAAGTATACGCTTTCGCCTTCAAATGCACTTCCAAGGGACTGTGCC
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGTATT-AGTATAG--ATACCTACCAAG
ACTTCCGGGTTTATCATCCTTTTGGA-TCTTATGTAATCCCCTAAGACC-ATCCTGTGCATTTAGC-TATCGGTTATTTG
CTGCTTAGACTGCTATGTGGTATGCTTTTGAAACAACCTTGATGGAAGAAATATATGCTTTCATCTTTAAGTGCACATCC
AAAGACCTTTGCATGATTGTCTATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1B_773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAATGTTCGTAGACTGCGAAAGATCA
TCCACAGTACCAT---GCCTGATAACTACTATATGTGCCACATGACAGAAACATTTGCAACACAAGGCAAAAGAATGGTA
ATCCTTTGCAATTACTCTGTCCGGTTTCATATAATAGCATGGTATAAAATGATATAGTGACTAACCTTTACTGTTATTTT
CAATACTTTCGCGTTCCCTTTTCTACGACTTCCCTTTT-CCGACACATGGACGCTAACCATGGTGAATTGCCAATCACTA
CTGGAGACAG--CTAA-CGCTGGCATGGCCCGCTTTATCAAGGGTGTTGAGAAAAGAGCCACCATCACTAAAGGCTGGAG
CGACTTCTTCCGTTAGGCACACATGAACGAAGGGCAAACATATGCTTTCACCTTCAAATACACTTCCAAGGGACTGCGCT
TGATCATCTACCCAATATAAGCAGGTTGCAAGAGCCCCTTGTTATATAACTTAGTATT-AGTATAG--ATGCCTATCAAG
ACTTCTATGTTTATCATCCTTTTGGA-TCTTATGTAAACCCCTAAGACCAATCATGTGCATTTAGC-TATCGGTTATTTG
CTGCTTAAACTACTGTGTGGTGTGATTTTGAAAAAACTATGATAAAAGAAATATACGCTTTCGCCTTCAAGTGCACATCC
AAAGGCCTTTGCATGATTGTCTATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3D_773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAATGTCCGTACACTGCGAAAGATCA
TCCGCAGCACCACCACGCCTGATAACTACTATGTGTGCCACATGACAGAAACATTTGCAACACAAGGCAAAAGAATGGTA
GTCCTTTGCAATTACTCTGTCCGGTTTCATATAATAGCATGGTATAAAATGATATAGTGACTAACCTTTACTATTATTTT
CAGTACTTTAGCGTTCCTTTTTCTAGGGGTTCCA-TTT-CCCACACATGGATGCTGACCATGGTGAACTGCCAATCACTA
CTGGAGACGGAACTGC-CGCTGTCACGGCCCGCTTTATCAAGGGTGTTGACAAAAGGGCAACCATCACTGAAGGCTGGAG
CGACTTCTTCCGTCAGGCACACATGAACGAAGGGCAAGTATACGCTTTCACCTTCAAATGCACTTCCAAGGGACTGTGCC
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAG-ATT-AGTATAG--ATACCTACCAAG
ACTTCCGTGTTTATCATCCTTTTGGA-TCTTATGTAATCCCCTAAGACC-ATCCTGTGCATTTAAC-TATCGGTTATTTG
CTGCTTAGACTGCTATGCGGTATGCTTTTGAAACAACCTTAATGGAAGAAATATATGCTTTCATCTTTAAGTGCACATCC
AAAGGCCTTTGCATGATTGTCTATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3D_773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAATGTTCGTACACTGTGAAAGATCA
TCTGCAGCACCACCACGCCTGATAACTACTATGTGTGCCACATGACAGAAACATTTGCAACAGAAGGCAAAAGAATGGTA
ATCCTTTGCAATTACTCTATCCGGTTTCATATAATAGCATGGTAGAAAATGTTATAGTGACTAACCTTTACTGTTATTTT
CAGTACTTTAGCGTTCCCTTTTATACGGGTTCCCTTTT-CCCACACATGGATGCTGACCATGGTAAACTGCCAATCACTA
TTGGAGACGGAACT-A-CGCTGTCACGACCCGCTTTATCAAGGGTGTTGACAAAAGGGCCACCATCACTAAAGGCTGGAG
CGACTTCTTCCGTTAGGCACACATGAACGAAGGGTGAGTATATGCTTTCGCCTTCAAATGCACTTCTAAGGGACTCTGCC
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGTATT-AGTACAG--ATGCGTATCAAG
ACTTCCGTGTTTATCATCCTTTTGGA-TCTTACGTAATCCCCTAAGACC-ATCCTGTGCATTTAGC-TATCGGTTATTTG
CCGCTTAGACTGCTATGTGGTATGCTTTTGAAACAACCTTGATGGAAGAAATATATGCTTTCACCTTTAAGTGCACATCC
AAAGGCCTCTGCATGATTGTCTATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr4D_773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAATGTTCGTACACTGCAAAAGATCA
TCCGCAGCACCACCACGCCTGATAACTACTATGTGTGTCACATGACAGAAACATTTGCAACACAAGGCAAAAGAATGGTA
ATCCTTTGCAATTACTCTGTCCGGTTTCATATAATAGCATGGTATAAAATGATATGGTGACCAACCTTTACTGTTATTTT
CAGTACTTTAGCGTTCCCTTTTCTATGGGTTCCCTTTT-CCCACACATGGATGTTGACCATGGTGAACTGCCAATCACTA
CTGGAGACGGAACT-ATCACTGTCACGGCCCGCTTTATCAAGGGTGTTGACAAAAGGGCAACCATCACTAAAGGCTGGAG
CGACTTCTTCTGTCAGGCACACATGAACGAAGGGCAAGTATATGCTTTCGCCTTCAAATGCACTTCCAAGGGACTGTGCC
TAATCATCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGTATT-AGTATAG--ATGCCTACCAAG
ACTTCTGTGTTTATCATCCTTTTGGA-TCTTATGTAATCCTCTAAGACC-ATCCTGTGCATTTAGC-TATCGGTTATATT
CTGCTTAGACTGCTATGTGGTATGCTTTTGAAACAACCTTAATGGAAGAAATATATGCTTTCACCTTCAAGTGCACATCC
AAAGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr2A_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGGAGAAAGGTCAAGCATATGTTTTCACCTTCAAATGCACTTTCAAGGGATTGTGCA
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAATTTAGCATT-AATATATGTATGCCTACCAAG
ACTTCTATGTTTATCATCCTTCTGAA-TCTTATGTAATCACCTAAGATC-ATGCTATGTGTTTAA-CTGTCGGTCATTTG
CTGCTTAGATTGTTGTGTGGTATGCTTTTGAAAAGGCTATGATGAAAGAAATATATGTTTTTGCCTTCAAGTGCACATTC
AAGGGCCTCTACATAATTGTCTATCACTATCACTTGCTTGCTGCATGCAGT---ATCGTAAGTTGTGCTTTGGCAGCAAC
AATAC-TTTAGAATATT-GTTCCTTTGTCTATTG------CTCTGCTCATTGCAGGTATGCAAGCTCTG-CTTTTTGAAA
TTCTTGATGTAAAAAAATATATTTTTGTTTGCTCTATCAAGAATATTAGCTCGAATAAATCCAAATGTATGCCAACTGAA
AATGCTTTTATGCGTTTATTTCCATATGTTTCATTCTGTATCTATATATTACAATGCACATTCTTTCAATACTTGGTTTG
CGCTCGACCTTTGTGCCATGGGCGCAACGGGTCATCTAGTATATGGGAAAGGAGAGGAGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr6D_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGAAGAGAGGTCAAGCATATGCTTTTGCCTTCAAATGCACTTCCAAGGGACTGCGCC
TGATCGTCTACTCTATATAAGCAGGTTGCAAGAGCCCCTTGTTATGTAACTTAACA-T-AGTATAG--ATGCCTACCAAG
ACTTCTATGTTTATCATCCTTTTGAA-TCTTATGTAATCACCTAAGACC-ATTCTGTGCATTTAACCTGTCGGTCATTTG
CTGCTTAGACTGTTGTGTGGTATGCTTTTGAAACGGCTATGATGAAAGAAATATATGCTTTTGCCTTCAAGTGCACATCC
AAAGGCCTCTGCATAATTGTCTATCACTATCGCTTTCTTGCTGCATGCAGT---ATCATTTGCTGTGCTTTGGCAGCAGC
AATAC-TTTAAAAAAATTGTTCCTTTGTCTATTGCATGTTCTCTGCTCATTGCAGGTATGCAAGCTCTG-CTTTTTGAAA
TTCTTGGTGTAAAGAAAAATATTGTTGTTTGCTCTATCAAGAATATTAGCTCAAATAAGTCCAGATGTATGCCAACTGAA
AAGGCTCTTATGCGTTTATTTACATATGTTTCATTTTGTATCTACATATTTCAATGCACACTCTTACAATACTTGGCTTG
CGCTCGGCCTTTGCGCCATGGGCGGAACGGGTCATCTAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1B_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGGAAAAAGGTCAAGCATATGCTTTCGCCTTCAAATGCACTTCCAAGGGACTGTGC-
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCA-TTAGCATAG--ATGCCTACCAAG
ACTTCTATGTTTATCATCCTTTTGAA-TCTTATATAATCACCTAAGACC-ATCCTGTGCGTTTAAC-TGTCGGTCATTTG
CTGCTTCGACTACTGTGTGGTATGCTTTTGAAACGGCTATGATGAAAGAAATATATGCTTTTGCCTTCAAGTGCACGTCC
AAGGGCCTCTGCATAATTGTCTATCACTATCGCTTGCTTGCTGCATGCAGT---AT---GAGCTGTGCTTTGGCAGCAAC
AATAC-TTTAAAAAATC-GTTCCTTTGTCTATTG------CTCTGCTCATTGCAGGTATGCAAGCTCTG-CTTTTTGGAA
TTCTTGGTGTAAAGAAAAATATTTTTGTTTGCTCTATCAAGAATATTAGCTCGAATAAGTCTAGATGTATGCCAACTGAA
AGGTCTCTTATGCGTTTATTTCCATATGTTTCATTCTGTACCTACATATTTCAATGCACACTCTTCTAATACTTGGCTCG
CGCTCGGCCTTTGCGCCATGGGCGCAACGGGTCATCTAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr6B_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGGAGAAAGGTCAAGCACATGCTTTCGCCTTCAAATGCACTTCCAAGGGATTGCGCT
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCATT-AGTATAG--ATGCTTACCAAG
ACTTCTACGTTTATCATCCTTTTG-A-TCTTATGTAATCACCTAAGGCC-ATCCTGTGCGTTCAAC-TGTCGGTCATTTG
CTGCTTAGACTGTTGTGTGGTATGCTTTTGAAACGGCTATGATGAAAGAAATATATGCTTTTGCCTTCGAGTGCACATCC
AAGGGCCTTTGCATAATTGTCAATCACTATCACTTGCTTGCTGCATGCCGTATCAT---GAGCTGTGCTTTGGCAGCAAC
AATAC-TTTAAAAAATT-GTTGCTTTGTCTATTG------CTCTGCTCATTGCAGGTATGCAAGCTCTGCCTTTTTGAAA
ATCTTGGTGTAAAGAAAAATATTTTTGTTTGCTCTATCAACAATATTAGCTCGAATAAGTCCAAATGTATGCCAACTGAA
AAGGCTCTTATGTGTTTATTTTCATATGTTTCATTCTATATTTACATATTTCAATGCATATT--TTCAATACTTGACTTG
TGCTCGGCCTTTGCGCCATGGACGCAACGGGTCATCTAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr4B_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGGAAAAAGGTCAAGCATATGCTTTCGCCTTCAAATGCACTTCCAAGGGACTGTGC-
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCCCTTGTTATATAACTTAGCA-TTAGCATAG--ATGCCTACCAAG
ACTTCTATGTTTATCATCCTTTTGAA-TCTTATATAATCATCTAAGACC-ATCCTGTGCGTTTAAC-TGTCGGTCATTTG
CTGCTTCGACTGCTGTGTGGTATGCTTTTGAAACGGCTATGATGAAAGAAATATATGCTTTTGCCTTCAAGTGCACGTCC
AAGGGCCTCTGCATAATTGTCTATCACTATCGCTTGCTTGCTGCATGCAG---CAT---GAGCTGTGCTTTGGCAGCAAC
AATAC-TTTAAAAAATC-ATTCCTTTGTCTATTG------CTCTGCCCATTACAGGTATGCAAGCTCTG-CTTTTTGGAA
TTCTTGGTGTAAAGAAAAATATTTTTGTTTGCTCTATCAAGAATATTAGCTCGAATAAGTCCAGATGTATGCCAACTGAA
AGGTCTCTTATGCGTT-ATTTCCATATGTTTCATTCTGTACCTACATATTTCAATGCAGACTCTTCTAATACTTGGCTCA
CACTCGGCCTTTGCACCATGGGCGCACCGGTTCATCTAGTGT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr6A_1135
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGGAGAAAGATCAAGCATATGCTTTCGCTTTCAAATGCACTTCCAAGAGATTGCGCC
TGATCGTCTATTCAATATAAGCAAGTTACAAAAGCCCCTTGTTATATAACTTAGCATT-AATATAGGTATGCCTACCAAG
ACTT--ACGTTTATCATCCTTCCG-AATCTTATGTAATCACCTAAGATC-ATGCTATGCGTTTAAC-TGTCGGTCATTTG
CTGCTTAGACTGTTGTGTGGTATGCTTTTGAAAAGGCTATGATGAAAGAAATACATACTTTTGCCTTCAAGTGCACATCC
AAGGGCCTCTGCATAATTGTCTATCACTATTACTTGCTTGCTGCATGCAGTATCGT---GAGCTGTGCTTTGGCAGCAAC
AATAC-TTTAAAATACT-GTTCCTTTGTCTATTG------CTCTGCTCATTGCAGGTATGCAAGCTCTG-CTTTCTGAAA
TTCTTGATGTAAAGAAAAATATTTTTGTTTGCTCTATCAAGAATATTAGCTCGAATAAGTCCAAATGTATGCCAAATGAA
AATGCTCTTATGCGTTTATTTTCATATGTTTCATTCTGTATCTATATATTACAATGCACACTCTTTCAATACTTGGCTTG
CGCTCGGCCTTTGCGCCATGGGCGCAACGGGTCATCTAGT----------------------------------------
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------------------------------------------------------------------------
>chr3A_1135
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---------------------CATGGAGAAAGGTCAAGCATATGTTTTCGCCTTCAAATGCACTTTCAAGGGATTGTGCA
TGATCGTCTACTCAATATAAGCAAGTTGCAAGAGCCTCTTGTTATATAATTTAGCATT-AATATATGTATGCCTACCAAG
ACTTCTACGTTTATCATCCTTCTG-AATCTTATGTAATCACCTAAGATC-ATGCTATGTGTTTAAC-TGTCGGTCATTTG
CTGCTTAGACTGTTGTGTGGTATGCTTTTGAAAAGGCTATGATGAAAGAAATATATGTTTTTCCCTTCAAGTGCACATCC
AAGGGCCTATGCATAATTTTCTATCACTATCACTTGCTTGCTGCATGCAGTATCGTA---AGCTGTGCTTTGGCAGCAAC
AATAC-TTTAAAATATT-GTTCCTTTGTCTATTG------CTCTGCTCATTGCAGGTATGCAAGCTCTG-CTTTCTGAAA
TTCTTGATGTAAAAAAATATATTTTTGTTTGCTCTATCAAGAATATTAGCTCGAATAAATCCAAATGTATGCCAACTGAA
AATGCTCTTATGCGTTTATTTCCATATGTTTCATTCTATATCTATATATTACAATGCACACTCTTCCAATACTTGGTTTG
CGCTCGACCTTTGTGCCATGGGCGCAACGGGTCATCTAGT----------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>SNPs
SSSSSSSSS------------------------S----------------------------------------------
----------------------------------------------------S---------------------------
----S-----------------------------------S----------------------S----------------
---S-----------S-----------------------S----------------------S-----------------
---S--------S-------------------------------------------------------------------
-S------------------------------------------------------S------------------S----
-S--------------------------------------------------------S---------------------
S-----------------S-------------------------------------------------------------
-------------------S---------------------SSSSSSSSSSSS---------------------------
-------------------------S------------------------------------------------------
----------------------------------------------S---------------------------------
-S---------------------------S--------------------------------------------------
S---------------------------------S---S--------------S--------------------------
--S-------------------------------------------------------S---------------------
--------------------------------------------------S--------------------------S--
-----------------------------SS-------------------------------------------------
-------------------------------------------------------S------------------------
------------S-------------------------------------------S-----------------------
----------------------------------------------------------------S---------------
---------------------S----------------------------------------------------------
----------------------------------------------------S----------------------S----
---------------------------------S---------------------------------S------------
------------------------------------------SS--S--S-SS--S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_482
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--------------------------------------------------------------GGACCACACCACCTTGTT
CT------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2101
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------TCTTCGTGAGCAAGCGAGTT----------------------------------------
------------------------------------------------------------------------
