Multiple sequence alignment - TraesCS2D01G226000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G226000 chr2D 100.000 4051 0 0 1 4051 194186709 194190759 0.000000e+00 7481.0
1 TraesCS2D01G226000 chr2B 94.019 1438 52 14 676 2095 250065321 250066742 0.000000e+00 2148.0
2 TraesCS2D01G226000 chr2B 91.315 852 39 14 2135 2980 250066748 250067570 0.000000e+00 1131.0
3 TraesCS2D01G226000 chr2B 89.755 654 49 13 1 646 250064677 250065320 0.000000e+00 821.0
4 TraesCS2D01G226000 chr2B 92.111 469 23 10 2976 3443 250068373 250068828 0.000000e+00 649.0
5 TraesCS2D01G226000 chr2B 92.899 169 5 5 3887 4050 250069139 250069305 5.230000e-59 239.0
6 TraesCS2D01G226000 chr2B 95.105 143 7 0 3488 3630 250068961 250069103 4.070000e-55 226.0
7 TraesCS2D01G226000 chr2B 92.063 63 1 3 3899 3958 250069093 250069154 7.210000e-13 86.1
8 TraesCS2D01G226000 chr2A 91.645 1520 66 28 2135 3632 208110458 208111938 0.000000e+00 2047.0
9 TraesCS2D01G226000 chr2A 92.488 1411 61 23 675 2062 208109045 208110433 0.000000e+00 1977.0
10 TraesCS2D01G226000 chr2A 94.030 268 10 3 3626 3887 717765595 717765862 6.310000e-108 401.0
11 TraesCS2D01G226000 chr2A 89.941 169 10 2 3887 4051 208111934 208112099 1.140000e-50 211.0
12 TraesCS2D01G226000 chr5A 95.506 267 6 3 3629 3889 465259929 465260195 4.840000e-114 422.0
13 TraesCS2D01G226000 chr1B 95.076 264 7 3 3632 3889 368956117 368956380 1.050000e-110 411.0
14 TraesCS2D01G226000 chr6A 93.190 279 13 3 3629 3901 601864529 601864807 4.880000e-109 405.0
15 TraesCS2D01G226000 chr5B 94.052 269 10 3 3628 3890 711285521 711285253 1.750000e-108 403.0
16 TraesCS2D01G226000 chr5B 93.431 274 11 4 3623 3889 94680416 94680689 2.270000e-107 399.0
17 TraesCS2D01G226000 chr6D 94.318 264 9 3 3632 3889 948151 947888 2.270000e-107 399.0
18 TraesCS2D01G226000 chr3A 93.704 270 11 3 3626 3889 505743474 505743743 2.270000e-107 399.0
19 TraesCS2D01G226000 chr7B 93.680 269 11 3 3627 3889 677059358 677059090 8.160000e-107 398.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G226000 chr2D 194186709 194190759 4050 False 7481.000000 7481 100.000000 1 4051 1 chr2D.!!$F1 4050
1 TraesCS2D01G226000 chr2B 250064677 250069305 4628 False 757.157143 2148 92.466714 1 4050 7 chr2B.!!$F1 4049
2 TraesCS2D01G226000 chr2A 208109045 208112099 3054 False 1411.666667 2047 91.358000 675 4051 3 chr2A.!!$F2 3376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 124 0.248012 TGCGGCTTACAATCGAAGGA 59.752 50.0 0.0 0.0 0.00 3.36 F
951 972 0.248054 CATTCGCATACCACCGCAAC 60.248 55.0 0.0 0.0 0.00 4.17 F
952 973 0.675208 ATTCGCATACCACCGCAACA 60.675 50.0 0.0 0.0 0.00 3.33 F
2194 2238 0.467384 CGATGATCTCCAACCTGGCT 59.533 55.0 0.0 0.0 37.47 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 1610 0.179189 CCTGCTCGGACGCAAAAATC 60.179 55.000 4.23 0.0 39.80 2.17 R
2155 2199 0.839946 CCCCCAGGAATCCTACAGTG 59.160 60.000 0.00 0.0 33.47 3.66 R
2583 2641 1.355381 ACCAGCTGAATCATCACCCAA 59.645 47.619 17.39 0.0 0.00 4.12 R
3318 4196 0.179048 TGTATCCATCGCCAGCAAGG 60.179 55.000 0.00 0.0 41.84 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 8.519526 TCGATTTTGAAAGCTTGGTATAACAAT 58.480 29.630 3.09 0.00 0.00 2.71
57 58 4.270808 GCTTGGTATAACAATGGCATTTGC 59.729 41.667 10.65 0.00 41.14 3.68
70 71 3.030668 GCATTTGCAGTGCCTTTTACT 57.969 42.857 13.72 0.00 41.59 2.24
71 72 2.733026 GCATTTGCAGTGCCTTTTACTG 59.267 45.455 13.72 0.00 46.37 2.74
72 73 3.799917 GCATTTGCAGTGCCTTTTACTGT 60.800 43.478 13.72 0.00 45.60 3.55
73 74 4.370917 CATTTGCAGTGCCTTTTACTGTT 58.629 39.130 13.72 0.00 45.60 3.16
74 75 3.435105 TTGCAGTGCCTTTTACTGTTG 57.565 42.857 13.72 0.00 45.60 3.33
75 76 1.680735 TGCAGTGCCTTTTACTGTTGG 59.319 47.619 13.72 0.00 45.60 3.77
78 79 3.795488 GCAGTGCCTTTTACTGTTGGTTC 60.795 47.826 2.85 0.00 45.60 3.62
83 84 3.795488 GCCTTTTACTGTTGGTTCACTGC 60.795 47.826 0.00 0.00 0.00 4.40
90 91 4.432712 ACTGTTGGTTCACTGCATTTTTC 58.567 39.130 0.00 0.00 0.00 2.29
93 94 5.830912 TGTTGGTTCACTGCATTTTTCTAG 58.169 37.500 0.00 0.00 0.00 2.43
103 105 4.088634 TGCATTTTTCTAGGCTCCAACAT 58.911 39.130 0.00 0.00 0.00 2.71
122 124 0.248012 TGCGGCTTACAATCGAAGGA 59.752 50.000 0.00 0.00 0.00 3.36
125 127 2.223044 GCGGCTTACAATCGAAGGAAAG 60.223 50.000 0.00 0.00 0.00 2.62
126 128 3.259064 CGGCTTACAATCGAAGGAAAGA 58.741 45.455 0.00 0.00 0.00 2.52
130 132 2.859165 ACAATCGAAGGAAAGAGGCA 57.141 45.000 0.00 0.00 0.00 4.75
134 136 0.687354 TCGAAGGAAAGAGGCAGCTT 59.313 50.000 0.00 0.00 0.00 3.74
135 137 1.899814 TCGAAGGAAAGAGGCAGCTTA 59.100 47.619 0.00 0.00 0.00 3.09
136 138 2.093973 TCGAAGGAAAGAGGCAGCTTAG 60.094 50.000 0.00 0.00 0.00 2.18
137 139 2.354203 CGAAGGAAAGAGGCAGCTTAGT 60.354 50.000 0.00 0.00 0.00 2.24
138 140 3.119101 CGAAGGAAAGAGGCAGCTTAGTA 60.119 47.826 0.00 0.00 0.00 1.82
139 141 4.442192 CGAAGGAAAGAGGCAGCTTAGTAT 60.442 45.833 0.00 0.00 0.00 2.12
140 142 5.221263 CGAAGGAAAGAGGCAGCTTAGTATA 60.221 44.000 0.00 0.00 0.00 1.47
186 188 7.995289 TCTATTGTTTGTTTTGTGTCATGTCT 58.005 30.769 0.00 0.00 0.00 3.41
197 199 5.233957 TGTGTCATGTCTTTTTCAGTGTG 57.766 39.130 0.00 0.00 0.00 3.82
202 204 1.405105 TGTCTTTTTCAGTGTGCTGGC 59.595 47.619 0.00 0.00 42.78 4.85
215 218 3.954258 GTGTGCTGGCTATTATTTCCCTT 59.046 43.478 0.00 0.00 0.00 3.95
363 366 9.330063 TGCATAAATGAACAAAACCACAAATTA 57.670 25.926 0.00 0.00 0.00 1.40
402 408 2.793278 TTTTTCTTCTTTGAGGCGGC 57.207 45.000 0.00 0.00 0.00 6.53
411 417 0.675208 TTTGAGGCGGCGATTTGCTA 60.675 50.000 12.98 0.00 45.43 3.49
445 452 5.657474 GGTCGTCAGTATGTCCTGATTTAA 58.343 41.667 0.00 0.00 43.03 1.52
459 466 9.912634 TGTCCTGATTTAAATCAATGACTTTTC 57.087 29.630 33.48 21.40 44.20 2.29
469 476 5.784750 TCAATGACTTTTCATCTGCTACG 57.215 39.130 0.00 0.00 42.00 3.51
497 504 9.832445 CTATAAGCTCATAGGTTTTAACAAGGA 57.168 33.333 0.00 0.00 37.16 3.36
510 517 6.569179 TTTAACAAGGATGCTCCAGTAAAC 57.431 37.500 5.21 0.00 39.61 2.01
535 543 3.071874 TGCCCAGAGTTGATAACAAGG 57.928 47.619 0.00 0.00 36.64 3.61
542 550 5.010012 CCAGAGTTGATAACAAGGTTTGCTT 59.990 40.000 0.00 0.00 36.64 3.91
559 567 0.739813 CTTACAGTGTGCCGCCTACC 60.740 60.000 5.88 0.00 0.00 3.18
562 570 4.065281 AGTGTGCCGCCTACCGAC 62.065 66.667 0.00 0.00 40.02 4.79
569 577 2.432300 CCGCCTACCGACCCAGAAT 61.432 63.158 0.00 0.00 40.02 2.40
573 581 1.065709 GCCTACCGACCCAGAATGAAA 60.066 52.381 0.00 0.00 39.69 2.69
604 612 8.537223 CACAAATTTCTTCAAATGACTTGTCTG 58.463 33.333 2.35 0.00 32.03 3.51
642 650 1.461559 AGGAACTTCTCGTAGGGACG 58.538 55.000 0.00 0.00 44.64 4.79
650 658 3.870606 CGTAGGGACGTGCCTTTG 58.129 61.111 34.47 21.92 44.31 2.77
651 659 1.740296 CGTAGGGACGTGCCTTTGG 60.740 63.158 34.47 18.81 44.31 3.28
652 660 1.376812 GTAGGGACGTGCCTTTGGG 60.377 63.158 34.47 0.00 36.66 4.12
664 672 1.703411 CCTTTGGGCCTTCTTGTTGA 58.297 50.000 4.53 0.00 0.00 3.18
665 673 2.250924 CCTTTGGGCCTTCTTGTTGAT 58.749 47.619 4.53 0.00 0.00 2.57
666 674 3.430453 CCTTTGGGCCTTCTTGTTGATA 58.570 45.455 4.53 0.00 0.00 2.15
667 675 3.831911 CCTTTGGGCCTTCTTGTTGATAA 59.168 43.478 4.53 0.00 0.00 1.75
668 676 4.283212 CCTTTGGGCCTTCTTGTTGATAAA 59.717 41.667 4.53 0.00 0.00 1.40
669 677 5.046376 CCTTTGGGCCTTCTTGTTGATAAAT 60.046 40.000 4.53 0.00 0.00 1.40
670 678 6.154363 CCTTTGGGCCTTCTTGTTGATAAATA 59.846 38.462 4.53 0.00 0.00 1.40
671 679 7.310361 CCTTTGGGCCTTCTTGTTGATAAATAA 60.310 37.037 4.53 0.00 0.00 1.40
672 680 7.546250 TTGGGCCTTCTTGTTGATAAATAAA 57.454 32.000 4.53 0.00 0.00 1.40
673 681 7.732222 TGGGCCTTCTTGTTGATAAATAAAT 57.268 32.000 4.53 0.00 0.00 1.40
674 682 8.830915 TGGGCCTTCTTGTTGATAAATAAATA 57.169 30.769 4.53 0.00 0.00 1.40
745 753 2.887152 CCATAGTGCAGGAAAATAGGGC 59.113 50.000 0.00 0.00 0.00 5.19
750 758 4.609301 AGTGCAGGAAAATAGGGCATAAA 58.391 39.130 0.00 0.00 36.79 1.40
751 759 5.211201 AGTGCAGGAAAATAGGGCATAAAT 58.789 37.500 0.00 0.00 36.79 1.40
752 760 5.662657 AGTGCAGGAAAATAGGGCATAAATT 59.337 36.000 0.00 0.00 36.79 1.82
753 761 6.838612 AGTGCAGGAAAATAGGGCATAAATTA 59.161 34.615 0.00 0.00 36.79 1.40
754 762 7.344352 AGTGCAGGAAAATAGGGCATAAATTAA 59.656 33.333 0.00 0.00 36.79 1.40
857 870 1.884926 CCCTTCTCCTTCGCGCATC 60.885 63.158 8.75 0.00 0.00 3.91
878 891 4.385386 TCCCCCATAAATACCTTCTTCCA 58.615 43.478 0.00 0.00 0.00 3.53
908 922 0.960364 CCCTCCACCATCACAAACCG 60.960 60.000 0.00 0.00 0.00 4.44
910 924 1.586154 CTCCACCATCACAAACCGGC 61.586 60.000 0.00 0.00 0.00 6.13
950 971 1.987704 GCATTCGCATACCACCGCAA 61.988 55.000 0.00 0.00 38.36 4.85
951 972 0.248054 CATTCGCATACCACCGCAAC 60.248 55.000 0.00 0.00 0.00 4.17
952 973 0.675208 ATTCGCATACCACCGCAACA 60.675 50.000 0.00 0.00 0.00 3.33
953 974 1.570347 TTCGCATACCACCGCAACAC 61.570 55.000 0.00 0.00 0.00 3.32
954 975 2.321333 CGCATACCACCGCAACACA 61.321 57.895 0.00 0.00 0.00 3.72
955 976 1.209127 GCATACCACCGCAACACAC 59.791 57.895 0.00 0.00 0.00 3.82
956 977 1.511318 GCATACCACCGCAACACACA 61.511 55.000 0.00 0.00 0.00 3.72
977 998 3.005791 CAGACAAACCCCAAGAAATCACC 59.994 47.826 0.00 0.00 0.00 4.02
979 1000 2.965147 ACAAACCCCAAGAAATCACCAG 59.035 45.455 0.00 0.00 0.00 4.00
1055 1076 2.803479 GTCCGCCGGTACCAGTAG 59.197 66.667 13.54 0.00 0.00 2.57
1093 1114 1.464198 AAGCCTGTCCACCTCCCTT 60.464 57.895 0.00 0.00 0.00 3.95
1094 1115 1.068352 AAGCCTGTCCACCTCCCTTT 61.068 55.000 0.00 0.00 0.00 3.11
1567 1588 1.479730 TCTTCTCGATGTGCTGATGCT 59.520 47.619 0.00 0.00 40.48 3.79
1883 1916 2.990479 CCTCCAGCAGGTACCACC 59.010 66.667 15.94 4.03 37.53 4.61
1957 1999 6.356186 AGTACTCCATTTACGAAGAACCTT 57.644 37.500 0.00 0.00 0.00 3.50
2063 2107 5.504392 GTTGTACTTTTGGGTACGACTTTG 58.496 41.667 14.35 0.00 45.99 2.77
2070 2114 1.477700 TGGGTACGACTTTGGTATCGG 59.522 52.381 0.00 0.00 42.67 4.18
2073 2117 2.480244 GGTACGACTTTGGTATCGGTCC 60.480 54.545 0.00 0.00 42.67 4.46
2083 2127 4.730949 TGGTATCGGTCCTTGAAAGTAG 57.269 45.455 0.00 0.00 0.00 2.57
2095 2139 5.182380 TCCTTGAAAGTAGGCGGTTTAATTG 59.818 40.000 0.00 0.00 32.59 2.32
2097 2141 6.294286 CCTTGAAAGTAGGCGGTTTAATTGAA 60.294 38.462 0.00 0.00 0.00 2.69
2098 2142 6.004408 TGAAAGTAGGCGGTTTAATTGAAC 57.996 37.500 4.57 4.57 0.00 3.18
2099 2143 5.531659 TGAAAGTAGGCGGTTTAATTGAACA 59.468 36.000 14.30 0.00 0.00 3.18
2100 2144 6.207810 TGAAAGTAGGCGGTTTAATTGAACAT 59.792 34.615 14.30 1.21 0.00 2.71
2101 2145 6.584185 AAGTAGGCGGTTTAATTGAACATT 57.416 33.333 14.30 0.67 0.00 2.71
2102 2146 7.690952 AAGTAGGCGGTTTAATTGAACATTA 57.309 32.000 14.30 0.00 0.00 1.90
2103 2147 7.875327 AGTAGGCGGTTTAATTGAACATTAT 57.125 32.000 14.30 1.51 0.00 1.28
2104 2148 8.967664 AGTAGGCGGTTTAATTGAACATTATA 57.032 30.769 14.30 0.69 0.00 0.98
2105 2149 9.569122 AGTAGGCGGTTTAATTGAACATTATAT 57.431 29.630 14.30 0.00 0.00 0.86
2108 2152 9.787435 AGGCGGTTTAATTGAACATTATATAGA 57.213 29.630 14.30 0.00 0.00 1.98
2127 2171 8.771920 ATATAGATTTCGTTTGACACTGTTGA 57.228 30.769 0.00 0.00 0.00 3.18
2128 2172 7.672983 ATAGATTTCGTTTGACACTGTTGAT 57.327 32.000 0.00 0.00 0.00 2.57
2129 2173 6.377327 AGATTTCGTTTGACACTGTTGATT 57.623 33.333 0.00 0.00 0.00 2.57
2130 2174 6.430451 AGATTTCGTTTGACACTGTTGATTC 58.570 36.000 0.00 0.00 0.00 2.52
2131 2175 5.811399 TTTCGTTTGACACTGTTGATTCT 57.189 34.783 0.00 0.00 0.00 2.40
2132 2176 4.794248 TCGTTTGACACTGTTGATTCTG 57.206 40.909 0.00 0.00 0.00 3.02
2133 2177 4.438148 TCGTTTGACACTGTTGATTCTGA 58.562 39.130 0.00 0.00 0.00 3.27
2139 2183 7.601073 TTGACACTGTTGATTCTGATGATAC 57.399 36.000 0.00 0.00 0.00 2.24
2143 2187 5.006068 CACTGTTGATTCTGATGATACCACG 59.994 44.000 0.00 0.00 0.00 4.94
2145 2189 4.869861 TGTTGATTCTGATGATACCACGTG 59.130 41.667 9.08 9.08 0.00 4.49
2154 2198 3.052455 TGATACCACGTGTGCTCAATT 57.948 42.857 15.65 0.00 0.00 2.32
2155 2199 3.000041 TGATACCACGTGTGCTCAATTC 59.000 45.455 15.65 0.78 0.00 2.17
2194 2238 0.467384 CGATGATCTCCAACCTGGCT 59.533 55.000 0.00 0.00 37.47 4.75
2197 2241 2.978156 TGATCTCCAACCTGGCTTTT 57.022 45.000 0.00 0.00 37.47 2.27
2224 2268 5.429681 TCCGGAACATATTCTCCAAGAAA 57.570 39.130 0.00 0.00 37.82 2.52
2397 2443 2.166664 ACTTCGTCTGGTAAGCTCCATC 59.833 50.000 0.00 0.00 36.84 3.51
2398 2444 1.847328 TCGTCTGGTAAGCTCCATCA 58.153 50.000 0.00 0.00 36.84 3.07
2399 2445 1.476891 TCGTCTGGTAAGCTCCATCAC 59.523 52.381 0.00 0.00 36.84 3.06
2400 2446 1.204704 CGTCTGGTAAGCTCCATCACA 59.795 52.381 0.00 0.00 36.84 3.58
2401 2447 2.736719 CGTCTGGTAAGCTCCATCACAG 60.737 54.545 0.00 0.00 36.84 3.66
2448 2494 5.125356 TGTCATAAGTTCATAGCCACCATG 58.875 41.667 0.00 0.00 0.00 3.66
2518 2576 5.114785 AGACGAACTATAGCATAGCAGTG 57.885 43.478 0.00 0.00 0.00 3.66
2529 2587 3.813724 AGCATAGCAGTGTAGCATTCATG 59.186 43.478 0.00 0.00 36.85 3.07
2579 2637 9.288576 TCATTCACACAAGACTAAGATTTTGAT 57.711 29.630 0.00 0.00 0.00 2.57
2583 2641 9.778741 TCACACAAGACTAAGATTTTGATAGTT 57.221 29.630 0.00 0.00 30.33 2.24
2586 2644 9.831737 CACAAGACTAAGATTTTGATAGTTTGG 57.168 33.333 0.00 0.00 30.33 3.28
2592 2650 8.960591 ACTAAGATTTTGATAGTTTGGGTGATG 58.039 33.333 0.00 0.00 0.00 3.07
2607 2665 4.622701 GGTGATGATTCAGCTGGTTAAC 57.377 45.455 15.13 0.00 45.02 2.01
2895 2958 0.879765 ACGTCTCACTTACCTCACCG 59.120 55.000 0.00 0.00 0.00 4.94
2907 2974 1.647545 CCTCACCGCGTACGTAAGGA 61.648 60.000 25.30 14.63 46.39 3.36
2908 2975 0.168788 CTCACCGCGTACGTAAGGAA 59.831 55.000 25.30 15.16 46.39 3.36
2909 2976 0.168788 TCACCGCGTACGTAAGGAAG 59.831 55.000 25.30 18.49 46.39 3.46
2910 2977 0.168788 CACCGCGTACGTAAGGAAGA 59.831 55.000 25.30 0.00 46.39 2.87
2911 2978 0.881118 ACCGCGTACGTAAGGAAGAA 59.119 50.000 25.30 0.00 46.39 2.52
2912 2979 1.135575 ACCGCGTACGTAAGGAAGAAG 60.136 52.381 25.30 5.90 46.39 2.85
2913 2980 1.542544 CGCGTACGTAAGGAAGAAGG 58.457 55.000 17.90 0.00 46.39 3.46
2924 2991 3.166560 AGGAAGAAGGAAGCAAGCAAT 57.833 42.857 0.00 0.00 0.00 3.56
2925 2992 3.504375 AGGAAGAAGGAAGCAAGCAATT 58.496 40.909 0.00 0.00 0.00 2.32
2934 3002 5.235516 AGGAAGCAAGCAATTCAGAATTTG 58.764 37.500 5.58 3.93 0.00 2.32
2940 3008 6.016024 AGCAAGCAATTCAGAATTTGACACTA 60.016 34.615 5.58 0.00 34.94 2.74
2952 3021 8.594687 CAGAATTTGACACTAAAACTTTGTTGG 58.405 33.333 0.00 0.00 0.00 3.77
2980 3049 0.895100 TGCAGGCAAAGCAGTAAGGG 60.895 55.000 0.00 0.00 37.02 3.95
2981 3050 0.609131 GCAGGCAAAGCAGTAAGGGA 60.609 55.000 0.00 0.00 0.00 4.20
2982 3051 1.909700 CAGGCAAAGCAGTAAGGGAA 58.090 50.000 0.00 0.00 0.00 3.97
3110 3986 9.810870 ATATACTCGTATTAGGAACCTTCTTCT 57.189 33.333 0.00 0.00 0.00 2.85
3111 3987 6.854091 ACTCGTATTAGGAACCTTCTTCTT 57.146 37.500 0.00 0.00 0.00 2.52
3112 3988 6.865411 ACTCGTATTAGGAACCTTCTTCTTC 58.135 40.000 0.00 0.00 0.00 2.87
3119 3995 7.818997 TTAGGAACCTTCTTCTTCCTTTTTC 57.181 36.000 4.33 0.00 43.24 2.29
3121 3997 5.103473 AGGAACCTTCTTCTTCCTTTTTCCT 60.103 40.000 0.00 0.00 43.24 3.36
3263 4141 1.480683 CCCCGATCTCCAGCCTACTTA 60.481 57.143 0.00 0.00 0.00 2.24
3264 4142 2.530701 CCCGATCTCCAGCCTACTTAT 58.469 52.381 0.00 0.00 0.00 1.73
3265 4143 3.563697 CCCCGATCTCCAGCCTACTTATA 60.564 52.174 0.00 0.00 0.00 0.98
3318 4196 0.101219 GCATCGGCCCAGATTGTTTC 59.899 55.000 0.00 0.00 0.00 2.78
3386 4264 0.821301 AGCCGAGATCTCTGCGATGA 60.821 55.000 26.99 0.00 43.28 2.92
3435 4315 1.336632 TTTGCTTGTTGCCTTGCCCT 61.337 50.000 0.00 0.00 42.00 5.19
3551 4540 3.768468 TTGGTTCAACGTCACCTTTTC 57.232 42.857 11.61 0.00 33.76 2.29
3552 4541 2.018515 TGGTTCAACGTCACCTTTTCC 58.981 47.619 11.61 0.00 33.76 3.13
3553 4542 1.003223 GGTTCAACGTCACCTTTTCCG 60.003 52.381 4.63 0.00 0.00 4.30
3617 4606 0.387565 TTTCGGTGCTTTTTGGGAGC 59.612 50.000 0.00 0.00 40.53 4.70
3637 4626 1.301293 GGAAACCTCCTCAGGCTGG 59.699 63.158 15.73 5.31 45.05 4.85
3638 4627 1.492993 GGAAACCTCCTCAGGCTGGT 61.493 60.000 15.73 0.30 45.05 4.00
3639 4628 0.035915 GAAACCTCCTCAGGCTGGTC 60.036 60.000 15.73 0.00 45.05 4.02
3641 4630 0.548682 AACCTCCTCAGGCTGGTCAT 60.549 55.000 15.73 0.00 45.05 3.06
3642 4631 0.339859 ACCTCCTCAGGCTGGTCATA 59.660 55.000 15.73 0.00 45.05 2.15
3643 4632 1.047002 CCTCCTCAGGCTGGTCATAG 58.953 60.000 15.73 3.79 30.98 2.23
3645 4634 1.411977 CTCCTCAGGCTGGTCATAGTG 59.588 57.143 15.73 0.00 0.00 2.74
3646 4635 0.467384 CCTCAGGCTGGTCATAGTGG 59.533 60.000 15.73 1.12 0.00 4.00
3647 4636 0.467384 CTCAGGCTGGTCATAGTGGG 59.533 60.000 15.73 0.00 0.00 4.61
3649 4638 0.467384 CAGGCTGGTCATAGTGGGAG 59.533 60.000 6.61 0.00 0.00 4.30
3650 4639 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
3651 4640 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
3652 4641 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3653 4642 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3654 4643 2.766828 GCTGGTCATAGTGGGAGTAACT 59.233 50.000 0.00 0.00 0.00 2.24
3655 4644 3.197983 GCTGGTCATAGTGGGAGTAACTT 59.802 47.826 0.00 0.00 0.00 2.66
3658 4647 5.834460 TGGTCATAGTGGGAGTAACTTAGA 58.166 41.667 0.00 0.00 0.00 2.10
3659 4648 5.655532 TGGTCATAGTGGGAGTAACTTAGAC 59.344 44.000 0.00 0.00 33.22 2.59
3660 4649 5.892686 GGTCATAGTGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 33.88 3.24
3661 4650 7.059156 GGTCATAGTGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 33.88 2.59
3662 4651 7.229106 GGTCATAGTGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 33.88 2.57
3663 4652 7.774625 GTCATAGTGGGAGTAACTTAGACTAGT 59.225 40.741 0.00 0.00 32.20 2.57
3664 4653 7.774157 TCATAGTGGGAGTAACTTAGACTAGTG 59.226 40.741 0.00 0.00 0.00 2.74
3665 4654 5.890049 AGTGGGAGTAACTTAGACTAGTGT 58.110 41.667 0.00 0.00 0.00 3.55
3666 4655 5.945191 AGTGGGAGTAACTTAGACTAGTGTC 59.055 44.000 0.00 0.00 43.22 3.67
3667 4656 5.709164 GTGGGAGTAACTTAGACTAGTGTCA 59.291 44.000 0.00 0.00 45.20 3.58
3668 4657 6.377712 GTGGGAGTAACTTAGACTAGTGTCAT 59.622 42.308 0.00 0.00 45.20 3.06
3669 4658 6.377429 TGGGAGTAACTTAGACTAGTGTCATG 59.623 42.308 0.00 0.00 45.20 3.07
3670 4659 6.267070 GGAGTAACTTAGACTAGTGTCATGC 58.733 44.000 0.00 0.00 45.20 4.06
3671 4660 6.127703 GGAGTAACTTAGACTAGTGTCATGCA 60.128 42.308 0.00 0.00 45.20 3.96
3672 4661 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
3673 4662 8.521170 AGTAACTTAGACTAGTGTCATGCATA 57.479 34.615 0.00 0.00 45.20 3.14
3674 4663 9.137459 AGTAACTTAGACTAGTGTCATGCATAT 57.863 33.333 0.00 0.00 45.20 1.78
3675 4664 9.186323 GTAACTTAGACTAGTGTCATGCATATG 57.814 37.037 0.00 0.00 45.20 1.78
3676 4665 7.588497 ACTTAGACTAGTGTCATGCATATGA 57.412 36.000 6.97 0.00 45.20 2.15
3689 4678 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
3690 4679 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
3691 4680 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
3692 4681 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
3693 4682 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
3694 4683 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
3695 4684 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
3699 4688 8.558973 TGACACTAGTCTAAGTTACTACCTTC 57.441 38.462 0.00 0.00 45.20 3.46
3700 4689 8.159447 TGACACTAGTCTAAGTTACTACCTTCA 58.841 37.037 0.00 0.00 45.20 3.02
3701 4690 9.176460 GACACTAGTCTAAGTTACTACCTTCAT 57.824 37.037 0.00 0.00 41.64 2.57
3707 4696 8.978472 AGTCTAAGTTACTACCTTCATAATGCA 58.022 33.333 0.00 0.00 0.00 3.96
3708 4697 9.595823 GTCTAAGTTACTACCTTCATAATGCAA 57.404 33.333 0.00 0.00 0.00 4.08
3711 4700 8.863872 AAGTTACTACCTTCATAATGCAAAGT 57.136 30.769 0.00 0.00 0.00 2.66
3712 4701 9.953565 AAGTTACTACCTTCATAATGCAAAGTA 57.046 29.630 0.00 0.00 0.00 2.24
3713 4702 9.953565 AGTTACTACCTTCATAATGCAAAGTAA 57.046 29.630 0.00 0.00 0.00 2.24
3757 4746 4.638304 GGCTTCATTTATTAGCCCGTAGA 58.362 43.478 0.00 0.00 46.94 2.59
3758 4747 4.451435 GGCTTCATTTATTAGCCCGTAGAC 59.549 45.833 0.00 0.00 46.94 2.59
3759 4748 5.298347 GCTTCATTTATTAGCCCGTAGACT 58.702 41.667 0.00 0.00 0.00 3.24
3760 4749 5.405873 GCTTCATTTATTAGCCCGTAGACTC 59.594 44.000 0.00 0.00 0.00 3.36
3761 4750 6.474140 TTCATTTATTAGCCCGTAGACTCA 57.526 37.500 0.00 0.00 0.00 3.41
3762 4751 6.665992 TCATTTATTAGCCCGTAGACTCAT 57.334 37.500 0.00 0.00 0.00 2.90
3763 4752 6.688578 TCATTTATTAGCCCGTAGACTCATC 58.311 40.000 0.00 0.00 0.00 2.92
3764 4753 6.493802 TCATTTATTAGCCCGTAGACTCATCT 59.506 38.462 0.00 0.00 39.15 2.90
3765 4754 6.726490 TTTATTAGCCCGTAGACTCATCTT 57.274 37.500 0.00 0.00 36.29 2.40
3766 4755 4.592485 ATTAGCCCGTAGACTCATCTTG 57.408 45.455 0.00 0.00 36.29 3.02
3767 4756 1.853963 AGCCCGTAGACTCATCTTGT 58.146 50.000 0.00 0.00 36.29 3.16
3768 4757 1.751924 AGCCCGTAGACTCATCTTGTC 59.248 52.381 0.00 0.00 36.29 3.18
3769 4758 1.751924 GCCCGTAGACTCATCTTGTCT 59.248 52.381 0.00 0.00 45.48 3.41
3770 4759 2.166664 GCCCGTAGACTCATCTTGTCTT 59.833 50.000 1.67 0.00 41.45 3.01
3771 4760 3.775202 CCCGTAGACTCATCTTGTCTTG 58.225 50.000 1.67 0.00 41.45 3.02
3772 4761 3.444034 CCCGTAGACTCATCTTGTCTTGA 59.556 47.826 1.67 0.00 41.45 3.02
3773 4762 4.082190 CCCGTAGACTCATCTTGTCTTGAA 60.082 45.833 1.67 0.00 41.45 2.69
3774 4763 5.470368 CCGTAGACTCATCTTGTCTTGAAA 58.530 41.667 1.67 0.00 41.45 2.69
3775 4764 5.926542 CCGTAGACTCATCTTGTCTTGAAAA 59.073 40.000 1.67 0.00 41.45 2.29
3776 4765 6.090088 CCGTAGACTCATCTTGTCTTGAAAAG 59.910 42.308 1.67 0.00 41.45 2.27
3777 4766 5.938438 AGACTCATCTTGTCTTGAAAAGC 57.062 39.130 0.00 0.00 45.70 3.51
3778 4767 4.450419 AGACTCATCTTGTCTTGAAAAGCG 59.550 41.667 0.00 0.00 45.70 4.68
3779 4768 3.058639 ACTCATCTTGTCTTGAAAAGCGC 60.059 43.478 0.00 0.00 45.70 5.92
3780 4769 3.141398 TCATCTTGTCTTGAAAAGCGCT 58.859 40.909 2.64 2.64 45.70 5.92
3781 4770 4.314961 TCATCTTGTCTTGAAAAGCGCTA 58.685 39.130 12.05 0.00 45.70 4.26
3782 4771 4.937620 TCATCTTGTCTTGAAAAGCGCTAT 59.062 37.500 12.05 1.76 45.70 2.97
3783 4772 4.668576 TCTTGTCTTGAAAAGCGCTATG 57.331 40.909 12.05 0.00 45.70 2.23
3784 4773 4.065088 TCTTGTCTTGAAAAGCGCTATGT 58.935 39.130 12.05 0.00 45.70 2.29
3785 4774 4.515191 TCTTGTCTTGAAAAGCGCTATGTT 59.485 37.500 12.05 5.31 45.70 2.71
3786 4775 5.699001 TCTTGTCTTGAAAAGCGCTATGTTA 59.301 36.000 12.05 0.00 45.70 2.41
3787 4776 5.277601 TGTCTTGAAAAGCGCTATGTTAC 57.722 39.130 12.05 4.27 45.70 2.50
3788 4777 4.752604 TGTCTTGAAAAGCGCTATGTTACA 59.247 37.500 12.05 7.09 45.70 2.41
3789 4778 5.107104 TGTCTTGAAAAGCGCTATGTTACAG 60.107 40.000 12.05 5.30 45.70 2.74
3790 4779 4.994852 TCTTGAAAAGCGCTATGTTACAGT 59.005 37.500 12.05 0.00 45.70 3.55
3791 4780 6.090358 GTCTTGAAAAGCGCTATGTTACAGTA 59.910 38.462 12.05 0.00 45.70 2.74
3792 4781 6.647481 TCTTGAAAAGCGCTATGTTACAGTAA 59.353 34.615 12.05 0.00 45.70 2.24
3793 4782 6.160664 TGAAAAGCGCTATGTTACAGTAAC 57.839 37.500 12.05 15.58 39.11 2.50
3794 4783 7.570507 CTTGAAAAGCGCTATGTTACAGTAACA 60.571 37.037 25.09 25.09 44.55 2.41
3826 4815 9.109393 TGTTACCATCTCTCATTAATTACTTGC 57.891 33.333 0.00 0.00 0.00 4.01
3827 4816 9.109393 GTTACCATCTCTCATTAATTACTTGCA 57.891 33.333 0.00 0.00 0.00 4.08
3828 4817 7.559590 ACCATCTCTCATTAATTACTTGCAC 57.440 36.000 0.00 0.00 0.00 4.57
3829 4818 7.112122 ACCATCTCTCATTAATTACTTGCACA 58.888 34.615 0.00 0.00 0.00 4.57
3830 4819 7.776969 ACCATCTCTCATTAATTACTTGCACAT 59.223 33.333 0.00 0.00 0.00 3.21
3831 4820 9.276590 CCATCTCTCATTAATTACTTGCACATA 57.723 33.333 0.00 0.00 0.00 2.29
3834 4823 8.830580 TCTCTCATTAATTACTTGCACATAAGC 58.169 33.333 0.00 0.00 0.00 3.09
3835 4824 8.504812 TCTCATTAATTACTTGCACATAAGCA 57.495 30.769 0.00 0.00 43.99 3.91
3836 4825 8.615211 TCTCATTAATTACTTGCACATAAGCAG 58.385 33.333 0.00 0.00 46.54 4.24
3837 4826 8.504812 TCATTAATTACTTGCACATAAGCAGA 57.495 30.769 0.00 0.00 46.54 4.26
3838 4827 8.955388 TCATTAATTACTTGCACATAAGCAGAA 58.045 29.630 0.00 0.00 46.54 3.02
3839 4828 9.740239 CATTAATTACTTGCACATAAGCAGAAT 57.260 29.630 0.00 0.00 46.54 2.40
3843 4832 8.693542 ATTACTTGCACATAAGCAGAATTTTC 57.306 30.769 0.00 0.00 46.54 2.29
3844 4833 6.336842 ACTTGCACATAAGCAGAATTTTCT 57.663 33.333 0.00 0.00 46.54 2.52
3845 4834 6.385033 ACTTGCACATAAGCAGAATTTTCTC 58.615 36.000 0.00 0.00 46.54 2.87
3846 4835 4.973396 TGCACATAAGCAGAATTTTCTCG 58.027 39.130 0.00 0.00 40.11 4.04
3847 4836 4.694982 TGCACATAAGCAGAATTTTCTCGA 59.305 37.500 0.00 0.00 40.11 4.04
3848 4837 5.181056 TGCACATAAGCAGAATTTTCTCGAA 59.819 36.000 0.00 0.00 40.11 3.71
3849 4838 5.736358 GCACATAAGCAGAATTTTCTCGAAG 59.264 40.000 0.00 0.00 34.74 3.79
3850 4839 6.621596 GCACATAAGCAGAATTTTCTCGAAGT 60.622 38.462 0.00 0.00 34.74 3.01
3851 4840 7.413000 GCACATAAGCAGAATTTTCTCGAAGTA 60.413 37.037 0.00 0.00 34.74 2.24
3852 4841 7.900352 CACATAAGCAGAATTTTCTCGAAGTAC 59.100 37.037 0.00 0.00 34.74 2.73
3853 4842 5.517037 AAGCAGAATTTTCTCGAAGTACG 57.483 39.130 0.00 0.00 44.09 3.67
3854 4843 3.368236 AGCAGAATTTTCTCGAAGTACGC 59.632 43.478 0.00 0.00 42.26 4.42
3855 4844 3.368236 GCAGAATTTTCTCGAAGTACGCT 59.632 43.478 0.00 0.00 42.26 5.07
3856 4845 4.561606 GCAGAATTTTCTCGAAGTACGCTA 59.438 41.667 0.00 0.00 42.26 4.26
3857 4846 5.232414 GCAGAATTTTCTCGAAGTACGCTAT 59.768 40.000 0.00 0.00 42.26 2.97
3858 4847 6.631847 CAGAATTTTCTCGAAGTACGCTATG 58.368 40.000 0.00 0.00 42.26 2.23
3859 4848 6.253727 CAGAATTTTCTCGAAGTACGCTATGT 59.746 38.462 0.00 0.00 42.26 2.29
3860 4849 6.812160 AGAATTTTCTCGAAGTACGCTATGTT 59.188 34.615 0.00 0.00 42.26 2.71
3861 4850 7.972277 AGAATTTTCTCGAAGTACGCTATGTTA 59.028 33.333 0.00 0.00 42.26 2.41
3862 4851 6.859715 TTTTCTCGAAGTACGCTATGTTAC 57.140 37.500 0.00 0.00 42.26 2.50
3863 4852 5.808042 TTCTCGAAGTACGCTATGTTACT 57.192 39.130 0.00 0.00 42.26 2.24
3864 4853 6.908870 TTCTCGAAGTACGCTATGTTACTA 57.091 37.500 0.00 0.00 42.26 1.82
3865 4854 6.522233 TCTCGAAGTACGCTATGTTACTAG 57.478 41.667 0.00 0.00 42.26 2.57
3866 4855 5.050499 TCTCGAAGTACGCTATGTTACTAGC 60.050 44.000 0.00 4.52 42.26 3.42
3867 4856 4.813161 TCGAAGTACGCTATGTTACTAGCT 59.187 41.667 10.40 0.00 41.61 3.32
3868 4857 5.985530 TCGAAGTACGCTATGTTACTAGCTA 59.014 40.000 10.40 0.00 41.61 3.32
3869 4858 6.479990 TCGAAGTACGCTATGTTACTAGCTAA 59.520 38.462 0.00 0.00 41.61 3.09
3870 4859 6.791299 CGAAGTACGCTATGTTACTAGCTAAG 59.209 42.308 0.00 0.00 41.61 2.18
3871 4860 7.518052 CGAAGTACGCTATGTTACTAGCTAAGT 60.518 40.741 0.00 0.00 41.61 2.24
3872 4861 7.565323 AGTACGCTATGTTACTAGCTAAGTT 57.435 36.000 0.00 0.00 41.61 2.66
3873 4862 7.638134 AGTACGCTATGTTACTAGCTAAGTTC 58.362 38.462 0.00 0.00 41.61 3.01
3874 4863 5.829829 ACGCTATGTTACTAGCTAAGTTCC 58.170 41.667 0.00 0.00 41.61 3.62
3875 4864 5.359009 ACGCTATGTTACTAGCTAAGTTCCA 59.641 40.000 0.00 0.00 41.61 3.53
3876 4865 5.686397 CGCTATGTTACTAGCTAAGTTCCAC 59.314 44.000 0.00 0.00 41.61 4.02
3877 4866 6.459848 CGCTATGTTACTAGCTAAGTTCCACT 60.460 42.308 0.00 0.00 41.61 4.00
3878 4867 7.255035 CGCTATGTTACTAGCTAAGTTCCACTA 60.255 40.741 0.00 0.00 41.61 2.74
3879 4868 8.578151 GCTATGTTACTAGCTAAGTTCCACTAT 58.422 37.037 0.00 0.00 40.79 2.12
3880 4869 9.900710 CTATGTTACTAGCTAAGTTCCACTATG 57.099 37.037 0.00 0.00 39.80 2.23
3881 4870 7.949690 TGTTACTAGCTAAGTTCCACTATGA 57.050 36.000 0.00 0.00 39.80 2.15
3882 4871 7.769220 TGTTACTAGCTAAGTTCCACTATGAC 58.231 38.462 0.00 0.00 39.80 3.06
3883 4872 7.614583 TGTTACTAGCTAAGTTCCACTATGACT 59.385 37.037 0.00 0.00 39.80 3.41
3885 4874 7.811117 ACTAGCTAAGTTCCACTATGACTAG 57.189 40.000 0.00 0.00 33.35 2.57
3890 4879 4.258457 AGTTCCACTATGACTAGCCTCT 57.742 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.323371 TGCCATTGTTATACCAAGCTTTC 57.677 39.130 0.00 0.00 0.00 2.62
65 66 5.590530 AAATGCAGTGAACCAACAGTAAA 57.409 34.783 0.00 0.00 0.00 2.01
66 67 5.590530 AAAATGCAGTGAACCAACAGTAA 57.409 34.783 0.00 0.00 0.00 2.24
68 69 4.160252 AGAAAAATGCAGTGAACCAACAGT 59.840 37.500 0.00 0.00 0.00 3.55
70 71 4.734398 AGAAAAATGCAGTGAACCAACA 57.266 36.364 0.00 0.00 0.00 3.33
71 72 5.222631 CCTAGAAAAATGCAGTGAACCAAC 58.777 41.667 0.00 0.00 0.00 3.77
72 73 4.261994 GCCTAGAAAAATGCAGTGAACCAA 60.262 41.667 0.00 0.00 0.00 3.67
73 74 3.255642 GCCTAGAAAAATGCAGTGAACCA 59.744 43.478 0.00 0.00 0.00 3.67
74 75 3.507622 AGCCTAGAAAAATGCAGTGAACC 59.492 43.478 0.00 0.00 0.00 3.62
75 76 4.379918 GGAGCCTAGAAAAATGCAGTGAAC 60.380 45.833 0.00 0.00 0.00 3.18
78 79 3.084039 TGGAGCCTAGAAAAATGCAGTG 58.916 45.455 0.00 0.00 0.00 3.66
83 84 4.427312 GCATGTTGGAGCCTAGAAAAATG 58.573 43.478 0.00 0.00 0.00 2.32
90 91 2.182842 GCCGCATGTTGGAGCCTAG 61.183 63.158 9.96 0.00 0.00 3.02
93 94 1.748879 TAAGCCGCATGTTGGAGCC 60.749 57.895 9.96 0.00 0.00 4.70
103 105 0.248012 TCCTTCGATTGTAAGCCGCA 59.752 50.000 0.00 0.00 0.00 5.69
197 199 7.709149 ATTATCAAGGGAAATAATAGCCAGC 57.291 36.000 0.00 0.00 0.00 4.85
236 239 7.562454 TCTTTTAAAAAGACACGGAATGACT 57.438 32.000 1.66 0.00 34.56 3.41
237 240 8.623310 TTTCTTTTAAAAAGACACGGAATGAC 57.377 30.769 1.66 0.00 0.00 3.06
334 337 6.519382 TGTGGTTTTGTTCATTTATGCATCA 58.481 32.000 0.19 0.00 0.00 3.07
382 385 2.351738 CGCCGCCTCAAAGAAGAAAAAT 60.352 45.455 0.00 0.00 0.00 1.82
396 402 2.287457 TACGTAGCAAATCGCCGCCT 62.287 55.000 0.00 0.00 44.04 5.52
445 452 6.372659 ACGTAGCAGATGAAAAGTCATTGATT 59.627 34.615 0.00 0.00 44.83 2.57
459 466 5.363979 TGAGCTTATAGACGTAGCAGATG 57.636 43.478 9.75 0.00 37.37 2.90
461 468 5.644206 CCTATGAGCTTATAGACGTAGCAGA 59.356 44.000 23.39 0.00 37.37 4.26
463 470 5.314529 ACCTATGAGCTTATAGACGTAGCA 58.685 41.667 23.39 0.00 37.37 3.49
521 528 6.966021 TGTAAGCAAACCTTGTTATCAACTC 58.034 36.000 0.00 0.00 34.95 3.01
525 532 5.825679 ACACTGTAAGCAAACCTTGTTATCA 59.174 36.000 0.00 0.00 37.60 2.15
535 543 0.660300 GCGGCACACTGTAAGCAAAC 60.660 55.000 0.00 0.00 37.60 2.93
542 550 2.975536 GGTAGGCGGCACACTGTA 59.024 61.111 13.08 0.00 0.00 2.74
559 567 2.031157 GTGTGGTTTTCATTCTGGGTCG 60.031 50.000 0.00 0.00 0.00 4.79
562 570 4.399004 TTTGTGTGGTTTTCATTCTGGG 57.601 40.909 0.00 0.00 0.00 4.45
569 577 7.969536 TTTGAAGAAATTTGTGTGGTTTTCA 57.030 28.000 0.00 0.00 31.94 2.69
573 581 7.330262 AGTCATTTGAAGAAATTTGTGTGGTT 58.670 30.769 0.00 0.00 28.65 3.67
646 654 5.467035 TTTATCAACAAGAAGGCCCAAAG 57.533 39.130 0.00 0.00 0.00 2.77
647 655 7.546250 TTATTTATCAACAAGAAGGCCCAAA 57.454 32.000 0.00 0.00 0.00 3.28
648 656 7.546250 TTTATTTATCAACAAGAAGGCCCAA 57.454 32.000 0.00 0.00 0.00 4.12
649 657 7.732222 ATTTATTTATCAACAAGAAGGCCCA 57.268 32.000 0.00 0.00 0.00 5.36
716 724 7.670605 ATTTTCCTGCACTATGGTACTACTA 57.329 36.000 0.00 0.00 0.00 1.82
717 725 6.561519 ATTTTCCTGCACTATGGTACTACT 57.438 37.500 0.00 0.00 0.00 2.57
718 726 6.929606 CCTATTTTCCTGCACTATGGTACTAC 59.070 42.308 0.00 0.00 0.00 2.73
857 870 4.470602 GTGGAAGAAGGTATTTATGGGGG 58.529 47.826 0.00 0.00 0.00 5.40
878 891 3.300962 TGGAGGGGGAGATGGGGT 61.301 66.667 0.00 0.00 0.00 4.95
950 971 1.283613 TCTTGGGGTTTGTCTGTGTGT 59.716 47.619 0.00 0.00 0.00 3.72
951 972 2.051334 TCTTGGGGTTTGTCTGTGTG 57.949 50.000 0.00 0.00 0.00 3.82
952 973 2.818751 TTCTTGGGGTTTGTCTGTGT 57.181 45.000 0.00 0.00 0.00 3.72
953 974 3.636300 TGATTTCTTGGGGTTTGTCTGTG 59.364 43.478 0.00 0.00 0.00 3.66
954 975 3.636764 GTGATTTCTTGGGGTTTGTCTGT 59.363 43.478 0.00 0.00 0.00 3.41
955 976 3.005791 GGTGATTTCTTGGGGTTTGTCTG 59.994 47.826 0.00 0.00 0.00 3.51
956 977 3.230976 GGTGATTTCTTGGGGTTTGTCT 58.769 45.455 0.00 0.00 0.00 3.41
1048 1069 0.843984 AACTTGGTGGTGCTACTGGT 59.156 50.000 0.00 0.00 0.00 4.00
1055 1076 2.087462 GAAGGCCAACTTGGTGGTGC 62.087 60.000 5.01 0.00 40.21 5.01
1093 1114 4.011517 GACGGCGTTGGGGAGGAA 62.012 66.667 16.19 0.00 0.00 3.36
1137 1158 1.379977 CTCCTGGCGGTACAGAGGA 60.380 63.158 0.00 0.19 40.97 3.71
1516 1537 2.783135 GGTGAGATTGGCAAGAACAGA 58.217 47.619 5.96 0.00 0.00 3.41
1540 1561 1.465354 GCACATCGAGAAGACGTACGT 60.465 52.381 23.04 23.04 34.70 3.57
1548 1569 1.937278 AGCATCAGCACATCGAGAAG 58.063 50.000 0.00 0.00 45.49 2.85
1587 1610 0.179189 CCTGCTCGGACGCAAAAATC 60.179 55.000 4.23 0.00 39.80 2.17
1725 1748 1.153549 GTGCTCGCCGAGGAAGAAT 60.154 57.895 16.95 0.00 30.58 2.40
1837 1860 4.340950 TCAAGGTTCAACAAAATGGGAGTC 59.659 41.667 0.00 0.00 0.00 3.36
1876 1909 6.982141 TGACGATATTTCTTATGTGGTGGTAC 59.018 38.462 0.00 0.00 0.00 3.34
1883 1916 8.177663 AGCAAAAGTGACGATATTTCTTATGTG 58.822 33.333 0.00 0.00 0.00 3.21
1957 1999 2.632996 CCTCAGGACTTGTGGACAGTTA 59.367 50.000 0.00 0.00 41.94 2.24
2063 2107 3.740452 GCCTACTTTCAAGGACCGATACC 60.740 52.174 0.00 0.00 36.08 2.73
2070 2114 2.180432 AACCGCCTACTTTCAAGGAC 57.820 50.000 0.00 0.00 36.08 3.85
2073 2117 6.249035 TCAATTAAACCGCCTACTTTCAAG 57.751 37.500 0.00 0.00 0.00 3.02
2101 2145 9.863845 TCAACAGTGTCAAACGAAATCTATATA 57.136 29.630 0.00 0.00 0.00 0.86
2102 2146 8.771920 TCAACAGTGTCAAACGAAATCTATAT 57.228 30.769 0.00 0.00 0.00 0.86
2103 2147 8.771920 ATCAACAGTGTCAAACGAAATCTATA 57.228 30.769 0.00 0.00 0.00 1.31
2104 2148 7.672983 ATCAACAGTGTCAAACGAAATCTAT 57.327 32.000 0.00 0.00 0.00 1.98
2105 2149 7.441157 AGAATCAACAGTGTCAAACGAAATCTA 59.559 33.333 0.00 0.00 0.00 1.98
2106 2150 6.260936 AGAATCAACAGTGTCAAACGAAATCT 59.739 34.615 0.00 0.00 0.00 2.40
2107 2151 6.358030 CAGAATCAACAGTGTCAAACGAAATC 59.642 38.462 0.00 0.00 0.00 2.17
2108 2152 6.038161 TCAGAATCAACAGTGTCAAACGAAAT 59.962 34.615 0.00 0.00 0.00 2.17
2109 2153 5.352846 TCAGAATCAACAGTGTCAAACGAAA 59.647 36.000 0.00 0.00 0.00 3.46
2110 2154 4.873259 TCAGAATCAACAGTGTCAAACGAA 59.127 37.500 0.00 0.00 0.00 3.85
2111 2155 4.438148 TCAGAATCAACAGTGTCAAACGA 58.562 39.130 0.00 0.00 0.00 3.85
2112 2156 4.794248 TCAGAATCAACAGTGTCAAACG 57.206 40.909 0.00 0.00 0.00 3.60
2113 2157 6.304356 TCATCAGAATCAACAGTGTCAAAC 57.696 37.500 0.00 0.00 0.00 2.93
2114 2158 7.119699 GGTATCATCAGAATCAACAGTGTCAAA 59.880 37.037 0.00 0.00 0.00 2.69
2115 2159 6.595326 GGTATCATCAGAATCAACAGTGTCAA 59.405 38.462 0.00 0.00 0.00 3.18
2116 2160 6.108687 GGTATCATCAGAATCAACAGTGTCA 58.891 40.000 0.00 0.00 0.00 3.58
2117 2161 6.036517 GTGGTATCATCAGAATCAACAGTGTC 59.963 42.308 0.00 0.00 0.00 3.67
2118 2162 5.877012 GTGGTATCATCAGAATCAACAGTGT 59.123 40.000 0.00 0.00 0.00 3.55
2119 2163 5.006068 CGTGGTATCATCAGAATCAACAGTG 59.994 44.000 0.00 0.00 0.00 3.66
2120 2164 5.111989 CGTGGTATCATCAGAATCAACAGT 58.888 41.667 0.00 0.00 0.00 3.55
2121 2165 5.006068 CACGTGGTATCATCAGAATCAACAG 59.994 44.000 7.95 0.00 0.00 3.16
2122 2166 4.869861 CACGTGGTATCATCAGAATCAACA 59.130 41.667 7.95 0.00 0.00 3.33
2123 2167 4.870426 ACACGTGGTATCATCAGAATCAAC 59.130 41.667 21.57 0.00 0.00 3.18
2124 2168 4.869861 CACACGTGGTATCATCAGAATCAA 59.130 41.667 21.57 0.00 0.00 2.57
2125 2169 4.432712 CACACGTGGTATCATCAGAATCA 58.567 43.478 21.57 0.00 0.00 2.57
2126 2170 3.246226 GCACACGTGGTATCATCAGAATC 59.754 47.826 21.57 0.00 0.00 2.52
2127 2171 3.118629 AGCACACGTGGTATCATCAGAAT 60.119 43.478 21.57 0.00 39.83 2.40
2128 2172 2.233676 AGCACACGTGGTATCATCAGAA 59.766 45.455 21.57 0.00 39.83 3.02
2129 2173 1.824852 AGCACACGTGGTATCATCAGA 59.175 47.619 21.57 0.00 39.83 3.27
2130 2174 2.196749 GAGCACACGTGGTATCATCAG 58.803 52.381 21.57 0.00 41.93 2.90
2131 2175 1.548269 TGAGCACACGTGGTATCATCA 59.452 47.619 21.57 11.62 41.93 3.07
2132 2176 2.293677 TGAGCACACGTGGTATCATC 57.706 50.000 21.57 9.20 41.93 2.92
2133 2177 2.760634 TTGAGCACACGTGGTATCAT 57.239 45.000 21.57 0.00 41.93 2.45
2139 2183 1.069703 CAGTGAATTGAGCACACGTGG 60.070 52.381 21.57 10.05 38.70 4.94
2143 2187 3.664107 TCCTACAGTGAATTGAGCACAC 58.336 45.455 0.00 0.00 38.70 3.82
2145 2189 4.333926 GGAATCCTACAGTGAATTGAGCAC 59.666 45.833 0.00 0.00 36.53 4.40
2154 2198 1.625228 CCCCCAGGAATCCTACAGTGA 60.625 57.143 0.00 0.00 33.47 3.41
2155 2199 0.839946 CCCCCAGGAATCCTACAGTG 59.160 60.000 0.00 0.00 33.47 3.66
2224 2268 1.604378 CGACTTGCCCTTCATCCCT 59.396 57.895 0.00 0.00 0.00 4.20
2401 2447 3.245948 CTGGCAAGCAGTCACGTGC 62.246 63.158 11.67 6.26 43.23 5.34
2448 2494 3.250762 TGCTAAGCATCAACACAACTGAC 59.749 43.478 0.00 0.00 31.71 3.51
2529 2587 3.581024 TGTGCCAATTCATTCTGAAGC 57.419 42.857 0.00 0.00 40.05 3.86
2562 2620 9.014297 ACCCAAACTATCAAAATCTTAGTCTTG 57.986 33.333 0.00 0.00 0.00 3.02
2579 2637 4.264253 CAGCTGAATCATCACCCAAACTA 58.736 43.478 8.42 0.00 0.00 2.24
2583 2641 1.355381 ACCAGCTGAATCATCACCCAA 59.645 47.619 17.39 0.00 0.00 4.12
2586 2644 3.063997 CGTTAACCAGCTGAATCATCACC 59.936 47.826 17.39 0.00 0.00 4.02
2592 2650 2.806244 ACACACGTTAACCAGCTGAATC 59.194 45.455 17.39 0.00 0.00 2.52
2599 2657 7.808672 TCCATTTATTTACACACGTTAACCAG 58.191 34.615 0.00 0.00 0.00 4.00
2607 2665 7.065803 ACAGAGGAATCCATTTATTTACACACG 59.934 37.037 0.61 0.00 0.00 4.49
2895 2958 2.927553 TCCTTCTTCCTTACGTACGC 57.072 50.000 16.72 0.00 0.00 4.42
2907 2974 4.147321 TCTGAATTGCTTGCTTCCTTCTT 58.853 39.130 0.00 0.00 0.00 2.52
2908 2975 3.759581 TCTGAATTGCTTGCTTCCTTCT 58.240 40.909 0.00 0.00 0.00 2.85
2909 2976 4.510038 TTCTGAATTGCTTGCTTCCTTC 57.490 40.909 0.00 0.00 0.00 3.46
2910 2977 5.479124 AATTCTGAATTGCTTGCTTCCTT 57.521 34.783 14.47 0.00 0.00 3.36
2911 2978 5.011329 TCAAATTCTGAATTGCTTGCTTCCT 59.989 36.000 15.80 0.00 0.00 3.36
2912 2979 5.119743 GTCAAATTCTGAATTGCTTGCTTCC 59.880 40.000 15.80 0.00 35.22 3.46
2913 2980 5.693104 TGTCAAATTCTGAATTGCTTGCTTC 59.307 36.000 15.80 6.32 35.22 3.86
2924 2991 9.921637 AACAAAGTTTTAGTGTCAAATTCTGAA 57.078 25.926 0.00 0.00 35.22 3.02
2925 2992 9.352784 CAACAAAGTTTTAGTGTCAAATTCTGA 57.647 29.630 0.00 0.00 0.00 3.27
2934 3002 4.607955 GAGGCCAACAAAGTTTTAGTGTC 58.392 43.478 5.01 0.00 0.00 3.67
2940 3008 1.822371 ACACGAGGCCAACAAAGTTTT 59.178 42.857 5.01 0.00 0.00 2.43
3026 3901 3.184541 ACAACATATAGTGTCCGAACGC 58.815 45.455 0.00 0.00 41.14 4.84
3027 3902 4.860352 TCAACAACATATAGTGTCCGAACG 59.140 41.667 0.00 0.00 41.14 3.95
3028 3903 5.220416 GCTCAACAACATATAGTGTCCGAAC 60.220 44.000 0.00 0.00 41.14 3.95
3084 3960 9.810870 AGAAGAAGGTTCCTAATACGAGTATAT 57.189 33.333 0.00 0.00 0.00 0.86
3085 3961 9.638176 AAGAAGAAGGTTCCTAATACGAGTATA 57.362 33.333 0.00 0.00 0.00 1.47
3086 3962 8.536340 AAGAAGAAGGTTCCTAATACGAGTAT 57.464 34.615 0.00 0.00 0.00 2.12
3087 3963 7.067981 GGAAGAAGAAGGTTCCTAATACGAGTA 59.932 40.741 0.00 0.00 39.42 2.59
3088 3964 6.127394 GGAAGAAGAAGGTTCCTAATACGAGT 60.127 42.308 0.00 0.00 39.42 4.18
3089 3965 6.274579 GGAAGAAGAAGGTTCCTAATACGAG 58.725 44.000 0.00 0.00 39.42 4.18
3090 3966 6.218108 GGAAGAAGAAGGTTCCTAATACGA 57.782 41.667 0.00 0.00 39.42 3.43
3263 4141 3.249080 CGACTTGTTTTGGACCACGTTAT 59.751 43.478 0.00 0.00 0.00 1.89
3264 4142 2.608546 CGACTTGTTTTGGACCACGTTA 59.391 45.455 0.00 0.00 0.00 3.18
3265 4143 1.399089 CGACTTGTTTTGGACCACGTT 59.601 47.619 0.00 0.00 0.00 3.99
3318 4196 0.179048 TGTATCCATCGCCAGCAAGG 60.179 55.000 0.00 0.00 41.84 3.61
3386 4264 2.797866 CTACGCTCCAACGTCGCACT 62.798 60.000 0.00 0.00 44.43 4.40
3435 4315 1.734655 AGCTCCCAAACAAGAGAGGA 58.265 50.000 0.00 0.00 31.43 3.71
3481 4470 2.466140 CCCAAACGCCGGGTATTCG 61.466 63.158 2.18 0.00 39.05 3.34
3552 4541 3.976701 ATCGCCCCTTTGAGCACCG 62.977 63.158 0.00 0.00 0.00 4.94
3553 4542 2.044946 ATCGCCCCTTTGAGCACC 60.045 61.111 0.00 0.00 0.00 5.01
3630 4619 0.467384 CTCCCACTATGACCAGCCTG 59.533 60.000 0.00 0.00 0.00 4.85
3632 4621 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
3633 4622 2.766828 AGTTACTCCCACTATGACCAGC 59.233 50.000 0.00 0.00 0.00 4.85
3634 4623 5.892119 TCTAAGTTACTCCCACTATGACCAG 59.108 44.000 0.00 0.00 0.00 4.00
3635 4624 5.655532 GTCTAAGTTACTCCCACTATGACCA 59.344 44.000 0.00 0.00 0.00 4.02
3637 4626 7.774625 ACTAGTCTAAGTTACTCCCACTATGAC 59.225 40.741 0.00 0.00 31.77 3.06
3638 4627 7.774157 CACTAGTCTAAGTTACTCCCACTATGA 59.226 40.741 0.00 0.00 0.00 2.15
3639 4628 7.556996 ACACTAGTCTAAGTTACTCCCACTATG 59.443 40.741 0.00 0.00 0.00 2.23
3641 4630 7.025520 ACACTAGTCTAAGTTACTCCCACTA 57.974 40.000 0.00 0.00 0.00 2.74
3642 4631 5.890049 ACACTAGTCTAAGTTACTCCCACT 58.110 41.667 0.00 0.00 0.00 4.00
3643 4632 5.709164 TGACACTAGTCTAAGTTACTCCCAC 59.291 44.000 0.00 0.00 45.20 4.61
3645 4634 6.680872 GCATGACACTAGTCTAAGTTACTCCC 60.681 46.154 0.00 0.00 45.20 4.30
3646 4635 6.127703 TGCATGACACTAGTCTAAGTTACTCC 60.128 42.308 0.00 0.00 45.20 3.85
3647 4636 6.853720 TGCATGACACTAGTCTAAGTTACTC 58.146 40.000 0.00 0.00 45.20 2.59
3649 4638 9.186323 CATATGCATGACACTAGTCTAAGTTAC 57.814 37.037 10.16 0.00 45.20 2.50
3650 4639 9.131791 TCATATGCATGACACTAGTCTAAGTTA 57.868 33.333 10.16 0.00 45.20 2.24
3651 4640 8.011844 TCATATGCATGACACTAGTCTAAGTT 57.988 34.615 10.16 0.00 45.20 2.66
3652 4641 7.588497 TCATATGCATGACACTAGTCTAAGT 57.412 36.000 10.16 0.00 45.20 2.24
3665 4654 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
3666 4655 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
3667 4656 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
3668 4657 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
3669 4658 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
3673 4662 9.176460 GAAGGTAGTAACTTAGACTAGTGTCAT 57.824 37.037 0.00 0.00 45.20 3.06
3674 4663 8.159447 TGAAGGTAGTAACTTAGACTAGTGTCA 58.841 37.037 0.00 0.00 45.20 3.58
3675 4664 8.558973 TGAAGGTAGTAACTTAGACTAGTGTC 57.441 38.462 0.00 0.00 43.22 3.67
3681 4670 8.978472 TGCATTATGAAGGTAGTAACTTAGACT 58.022 33.333 0.00 0.00 0.00 3.24
3682 4671 9.595823 TTGCATTATGAAGGTAGTAACTTAGAC 57.404 33.333 0.00 0.00 0.00 2.59
3685 4674 9.953565 ACTTTGCATTATGAAGGTAGTAACTTA 57.046 29.630 0.00 0.00 0.00 2.24
3686 4675 8.863872 ACTTTGCATTATGAAGGTAGTAACTT 57.136 30.769 0.00 0.00 0.00 2.66
3687 4676 9.953565 TTACTTTGCATTATGAAGGTAGTAACT 57.046 29.630 0.00 0.00 0.00 2.24
3736 4725 5.298347 AGTCTACGGGCTAATAAATGAAGC 58.702 41.667 0.00 0.00 35.47 3.86
3737 4726 6.513180 TGAGTCTACGGGCTAATAAATGAAG 58.487 40.000 0.00 0.00 0.00 3.02
3738 4727 6.474140 TGAGTCTACGGGCTAATAAATGAA 57.526 37.500 0.00 0.00 0.00 2.57
3739 4728 6.493802 AGATGAGTCTACGGGCTAATAAATGA 59.506 38.462 0.00 0.00 31.36 2.57
3740 4729 6.692486 AGATGAGTCTACGGGCTAATAAATG 58.308 40.000 0.00 0.00 31.36 2.32
3741 4730 6.919775 AGATGAGTCTACGGGCTAATAAAT 57.080 37.500 0.00 0.00 31.36 1.40
3742 4731 6.097839 ACAAGATGAGTCTACGGGCTAATAAA 59.902 38.462 0.00 0.00 33.30 1.40
3743 4732 5.597182 ACAAGATGAGTCTACGGGCTAATAA 59.403 40.000 0.00 0.00 33.30 1.40
3744 4733 5.138276 ACAAGATGAGTCTACGGGCTAATA 58.862 41.667 0.00 0.00 33.30 0.98
3745 4734 3.961408 ACAAGATGAGTCTACGGGCTAAT 59.039 43.478 0.00 0.00 33.30 1.73
3746 4735 3.362706 ACAAGATGAGTCTACGGGCTAA 58.637 45.455 0.00 0.00 33.30 3.09
3747 4736 2.950309 GACAAGATGAGTCTACGGGCTA 59.050 50.000 0.00 0.00 33.30 3.93
3748 4737 1.751924 GACAAGATGAGTCTACGGGCT 59.248 52.381 0.00 0.00 33.30 5.19
3749 4738 1.751924 AGACAAGATGAGTCTACGGGC 59.248 52.381 0.00 0.00 44.10 6.13
3750 4739 3.444034 TCAAGACAAGATGAGTCTACGGG 59.556 47.826 0.00 0.00 45.11 5.28
3751 4740 4.703645 TCAAGACAAGATGAGTCTACGG 57.296 45.455 0.00 0.00 45.11 4.02
3752 4741 6.400515 GCTTTTCAAGACAAGATGAGTCTACG 60.401 42.308 0.41 0.00 45.11 3.51
3753 4742 6.400515 CGCTTTTCAAGACAAGATGAGTCTAC 60.401 42.308 0.41 0.00 45.11 2.59
3754 4743 5.635280 CGCTTTTCAAGACAAGATGAGTCTA 59.365 40.000 0.41 0.00 45.11 2.59
3756 4745 4.706527 CGCTTTTCAAGACAAGATGAGTC 58.293 43.478 0.41 0.00 36.26 3.36
3757 4746 3.058639 GCGCTTTTCAAGACAAGATGAGT 60.059 43.478 0.00 0.00 0.00 3.41
3758 4747 3.188048 AGCGCTTTTCAAGACAAGATGAG 59.812 43.478 2.64 0.00 0.00 2.90
3759 4748 3.141398 AGCGCTTTTCAAGACAAGATGA 58.859 40.909 2.64 0.00 0.00 2.92
3760 4749 3.549299 AGCGCTTTTCAAGACAAGATG 57.451 42.857 2.64 0.00 0.00 2.90
3761 4750 4.697352 ACATAGCGCTTTTCAAGACAAGAT 59.303 37.500 18.68 0.00 0.00 2.40
3762 4751 4.065088 ACATAGCGCTTTTCAAGACAAGA 58.935 39.130 18.68 0.00 0.00 3.02
3763 4752 4.410492 ACATAGCGCTTTTCAAGACAAG 57.590 40.909 18.68 0.00 0.00 3.16
3764 4753 4.829064 AACATAGCGCTTTTCAAGACAA 57.171 36.364 18.68 0.00 0.00 3.18
3765 4754 4.752604 TGTAACATAGCGCTTTTCAAGACA 59.247 37.500 18.68 9.17 0.00 3.41
3766 4755 5.107065 ACTGTAACATAGCGCTTTTCAAGAC 60.107 40.000 18.68 6.42 0.00 3.01
3767 4756 4.994852 ACTGTAACATAGCGCTTTTCAAGA 59.005 37.500 18.68 0.00 0.00 3.02
3768 4757 5.283060 ACTGTAACATAGCGCTTTTCAAG 57.717 39.130 18.68 7.94 0.00 3.02
3769 4758 6.203145 TGTTACTGTAACATAGCGCTTTTCAA 59.797 34.615 25.14 0.00 43.23 2.69
3770 4759 5.697178 TGTTACTGTAACATAGCGCTTTTCA 59.303 36.000 25.14 7.38 43.23 2.69
3771 4760 6.160664 TGTTACTGTAACATAGCGCTTTTC 57.839 37.500 25.14 2.12 43.23 2.29
3801 4790 9.109393 TGCAAGTAATTAATGAGAGATGGTAAC 57.891 33.333 4.19 0.00 0.00 2.50
3802 4791 9.109393 GTGCAAGTAATTAATGAGAGATGGTAA 57.891 33.333 0.00 0.00 0.00 2.85
3803 4792 8.264347 TGTGCAAGTAATTAATGAGAGATGGTA 58.736 33.333 0.00 0.00 0.00 3.25
3804 4793 7.112122 TGTGCAAGTAATTAATGAGAGATGGT 58.888 34.615 0.00 0.00 0.00 3.55
3805 4794 7.558161 TGTGCAAGTAATTAATGAGAGATGG 57.442 36.000 0.00 0.00 0.00 3.51
3808 4797 8.830580 GCTTATGTGCAAGTAATTAATGAGAGA 58.169 33.333 0.00 0.00 0.00 3.10
3809 4798 8.615211 TGCTTATGTGCAAGTAATTAATGAGAG 58.385 33.333 0.00 0.00 40.29 3.20
3810 4799 8.504812 TGCTTATGTGCAAGTAATTAATGAGA 57.495 30.769 0.00 0.00 40.29 3.27
3811 4800 8.615211 TCTGCTTATGTGCAAGTAATTAATGAG 58.385 33.333 0.00 0.00 42.83 2.90
3812 4801 8.504812 TCTGCTTATGTGCAAGTAATTAATGA 57.495 30.769 0.00 0.00 42.83 2.57
3813 4802 9.740239 ATTCTGCTTATGTGCAAGTAATTAATG 57.260 29.630 0.00 0.00 42.83 1.90
3817 4806 9.143631 GAAAATTCTGCTTATGTGCAAGTAATT 57.856 29.630 0.00 0.00 42.83 1.40
3818 4807 8.526147 AGAAAATTCTGCTTATGTGCAAGTAAT 58.474 29.630 0.00 0.00 42.83 1.89
3819 4808 7.885297 AGAAAATTCTGCTTATGTGCAAGTAA 58.115 30.769 0.00 0.00 42.83 2.24
3820 4809 7.452880 AGAAAATTCTGCTTATGTGCAAGTA 57.547 32.000 0.00 0.00 42.83 2.24
3821 4810 6.336842 AGAAAATTCTGCTTATGTGCAAGT 57.663 33.333 0.00 0.00 42.83 3.16
3822 4811 5.510674 CGAGAAAATTCTGCTTATGTGCAAG 59.489 40.000 0.00 0.00 42.83 4.01
3823 4812 5.181056 TCGAGAAAATTCTGCTTATGTGCAA 59.819 36.000 0.00 0.00 42.83 4.08
3824 4813 4.694982 TCGAGAAAATTCTGCTTATGTGCA 59.305 37.500 0.00 0.00 37.73 4.57
3825 4814 5.221891 TCGAGAAAATTCTGCTTATGTGC 57.778 39.130 0.00 0.00 37.73 4.57
3826 4815 6.835914 ACTTCGAGAAAATTCTGCTTATGTG 58.164 36.000 0.00 0.00 37.73 3.21
3827 4816 7.201444 CGTACTTCGAGAAAATTCTGCTTATGT 60.201 37.037 0.00 0.00 42.86 2.29
3828 4817 7.113658 CGTACTTCGAGAAAATTCTGCTTATG 58.886 38.462 0.00 0.00 42.86 1.90
3829 4818 6.237861 GCGTACTTCGAGAAAATTCTGCTTAT 60.238 38.462 0.00 0.00 42.86 1.73
3830 4819 5.061808 GCGTACTTCGAGAAAATTCTGCTTA 59.938 40.000 0.00 0.00 42.86 3.09
3831 4820 4.143094 GCGTACTTCGAGAAAATTCTGCTT 60.143 41.667 0.00 0.00 42.86 3.91
3832 4821 3.368236 GCGTACTTCGAGAAAATTCTGCT 59.632 43.478 0.00 0.00 42.86 4.24
3833 4822 3.368236 AGCGTACTTCGAGAAAATTCTGC 59.632 43.478 0.00 0.00 42.86 4.26
3834 4823 6.253727 ACATAGCGTACTTCGAGAAAATTCTG 59.746 38.462 0.00 0.00 42.86 3.02
3835 4824 6.331061 ACATAGCGTACTTCGAGAAAATTCT 58.669 36.000 0.00 0.00 42.86 2.40
3836 4825 6.570690 ACATAGCGTACTTCGAGAAAATTC 57.429 37.500 0.00 0.00 42.86 2.17
3837 4826 6.963049 AACATAGCGTACTTCGAGAAAATT 57.037 33.333 0.00 0.00 42.86 1.82
3838 4827 7.256286 AGTAACATAGCGTACTTCGAGAAAAT 58.744 34.615 0.00 0.00 42.86 1.82
3839 4828 6.615088 AGTAACATAGCGTACTTCGAGAAAA 58.385 36.000 0.00 0.00 42.86 2.29
3840 4829 6.187125 AGTAACATAGCGTACTTCGAGAAA 57.813 37.500 0.00 0.00 42.86 2.52
3841 4830 5.808042 AGTAACATAGCGTACTTCGAGAA 57.192 39.130 0.00 0.00 42.86 2.87
3842 4831 5.050499 GCTAGTAACATAGCGTACTTCGAGA 60.050 44.000 0.00 0.00 42.86 4.04
3843 4832 5.138788 GCTAGTAACATAGCGTACTTCGAG 58.861 45.833 0.00 0.00 42.86 4.04
3844 4833 5.088141 GCTAGTAACATAGCGTACTTCGA 57.912 43.478 0.00 0.00 42.86 3.71
3870 4859 6.568844 CGATAAGAGGCTAGTCATAGTGGAAC 60.569 46.154 0.00 0.00 0.00 3.62
3871 4860 5.473846 CGATAAGAGGCTAGTCATAGTGGAA 59.526 44.000 0.00 0.00 0.00 3.53
3872 4861 5.004448 CGATAAGAGGCTAGTCATAGTGGA 58.996 45.833 0.00 0.00 0.00 4.02
3873 4862 5.004448 TCGATAAGAGGCTAGTCATAGTGG 58.996 45.833 0.00 0.00 0.00 4.00
3874 4863 6.404184 CCATCGATAAGAGGCTAGTCATAGTG 60.404 46.154 0.00 0.00 0.00 2.74
3875 4864 5.650266 CCATCGATAAGAGGCTAGTCATAGT 59.350 44.000 0.00 0.00 0.00 2.12
3876 4865 5.883115 TCCATCGATAAGAGGCTAGTCATAG 59.117 44.000 0.00 0.00 0.00 2.23
3877 4866 5.816682 TCCATCGATAAGAGGCTAGTCATA 58.183 41.667 0.00 0.00 0.00 2.15
3878 4867 4.667573 TCCATCGATAAGAGGCTAGTCAT 58.332 43.478 0.00 0.00 0.00 3.06
3879 4868 4.100279 TCCATCGATAAGAGGCTAGTCA 57.900 45.455 0.00 0.00 0.00 3.41
3880 4869 4.278669 TGTTCCATCGATAAGAGGCTAGTC 59.721 45.833 0.00 0.00 0.00 2.59
3881 4870 4.038162 GTGTTCCATCGATAAGAGGCTAGT 59.962 45.833 0.00 0.00 0.00 2.57
3882 4871 4.551388 GTGTTCCATCGATAAGAGGCTAG 58.449 47.826 0.00 0.00 0.00 3.42
3883 4872 3.321111 GGTGTTCCATCGATAAGAGGCTA 59.679 47.826 0.00 0.00 0.00 3.93
3885 4874 2.103263 AGGTGTTCCATCGATAAGAGGC 59.897 50.000 0.00 0.00 35.89 4.70
3890 4879 5.684030 GCCTAGAAAGGTGTTCCATCGATAA 60.684 44.000 0.00 0.00 45.64 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.