Multiple sequence alignment - TraesCS2D01G220600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G220600 chr2D 100.000 2757 0 0 1 2757 188282267 188279511 0.000000e+00 5092.0
1 TraesCS2D01G220600 chr2B 91.958 1977 73 31 410 2325 244172950 244170999 0.000000e+00 2691.0
2 TraesCS2D01G220600 chr2B 95.429 175 5 3 70 244 244173212 244173041 2.700000e-70 276.0
3 TraesCS2D01G220600 chr2B 88.889 126 10 3 270 395 244173056 244172935 4.760000e-33 152.0
4 TraesCS2D01G220600 chr2B 100.000 32 0 0 2318 2349 244164059 244164028 2.970000e-05 60.2
5 TraesCS2D01G220600 chr2B 100.000 32 0 0 180 211 244173242 244173211 2.970000e-05 60.2
6 TraesCS2D01G220600 chr2A 96.547 1419 36 9 410 1819 201798802 201797388 0.000000e+00 2337.0
7 TraesCS2D01G220600 chr2A 89.428 804 20 12 1811 2558 201797363 201796569 0.000000e+00 953.0
8 TraesCS2D01G220600 chr2A 96.916 227 6 1 18 244 201799118 201798893 2.000000e-101 379.0
9 TraesCS2D01G220600 chr2A 91.905 210 12 2 2549 2757 201796345 201796140 3.470000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G220600 chr2D 188279511 188282267 2756 True 5092.0 5092 100.000 1 2757 1 chr2D.!!$R1 2756
1 TraesCS2D01G220600 chr2B 244170999 244173242 2243 True 794.8 2691 94.069 70 2325 4 chr2B.!!$R2 2255
2 TraesCS2D01G220600 chr2A 201796140 201799118 2978 True 989.5 2337 93.699 18 2757 4 chr2A.!!$R1 2739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.106708 CTGGCGGCCATACATGTAGT 59.893 55.0 24.1 0.0 30.82 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2357 0.039256 CTCGTCGACCAAAACCGGTA 60.039 55.0 8.0 0.0 40.22 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.153568 CTGAGCGCCATCTCCGAAA 60.154 57.895 2.29 0.00 32.22 3.46
70 71 8.127327 TCTCCGAAAGTCGTTGTTTAGATATAG 58.873 37.037 0.00 0.00 38.40 1.31
236 237 0.957395 CACCACACACCAGATGGCTC 60.957 60.000 0.00 0.00 39.32 4.70
237 238 1.130054 ACCACACACCAGATGGCTCT 61.130 55.000 0.00 0.00 39.32 4.09
238 239 0.904649 CCACACACCAGATGGCTCTA 59.095 55.000 0.00 0.00 39.32 2.43
239 240 1.487976 CCACACACCAGATGGCTCTAT 59.512 52.381 0.00 0.00 39.32 1.98
240 241 2.092753 CCACACACCAGATGGCTCTATT 60.093 50.000 0.00 0.00 39.32 1.73
241 242 2.941064 CACACACCAGATGGCTCTATTG 59.059 50.000 0.00 0.00 39.32 1.90
242 243 1.945394 CACACCAGATGGCTCTATTGC 59.055 52.381 0.00 0.00 39.32 3.56
243 244 1.561076 ACACCAGATGGCTCTATTGCA 59.439 47.619 0.00 0.00 39.32 4.08
244 245 2.174210 ACACCAGATGGCTCTATTGCAT 59.826 45.455 0.00 0.00 39.32 3.96
245 246 3.220110 CACCAGATGGCTCTATTGCATT 58.780 45.455 0.00 0.00 39.32 3.56
246 247 3.635373 CACCAGATGGCTCTATTGCATTT 59.365 43.478 0.00 0.00 39.32 2.32
247 248 3.887716 ACCAGATGGCTCTATTGCATTTC 59.112 43.478 0.00 0.00 39.32 2.17
248 249 3.255149 CCAGATGGCTCTATTGCATTTCC 59.745 47.826 0.00 0.00 34.04 3.13
249 250 3.255149 CAGATGGCTCTATTGCATTTCCC 59.745 47.826 0.00 0.00 34.04 3.97
250 251 3.139770 AGATGGCTCTATTGCATTTCCCT 59.860 43.478 0.00 0.00 34.04 4.20
251 252 2.936202 TGGCTCTATTGCATTTCCCTC 58.064 47.619 0.00 0.00 34.04 4.30
252 253 2.241941 TGGCTCTATTGCATTTCCCTCA 59.758 45.455 0.00 0.00 34.04 3.86
253 254 3.290710 GGCTCTATTGCATTTCCCTCAA 58.709 45.455 0.00 0.00 34.04 3.02
254 255 3.701040 GGCTCTATTGCATTTCCCTCAAA 59.299 43.478 0.00 0.00 34.04 2.69
255 256 4.160252 GGCTCTATTGCATTTCCCTCAAAA 59.840 41.667 0.00 0.00 34.04 2.44
256 257 5.337491 GGCTCTATTGCATTTCCCTCAAAAA 60.337 40.000 0.00 0.00 34.04 1.94
344 345 2.516930 GCTGGCGGCCATACATGT 60.517 61.111 24.10 2.69 30.82 3.21
345 346 1.227823 GCTGGCGGCCATACATGTA 60.228 57.895 24.10 8.27 30.82 2.29
346 347 1.230635 GCTGGCGGCCATACATGTAG 61.231 60.000 24.10 9.28 30.82 2.74
347 348 0.106708 CTGGCGGCCATACATGTAGT 59.893 55.000 24.10 0.00 30.82 2.73
348 349 1.343142 CTGGCGGCCATACATGTAGTA 59.657 52.381 24.10 0.00 37.06 1.82
349 350 1.069513 TGGCGGCCATACATGTAGTAC 59.930 52.381 19.77 2.75 35.05 2.73
351 352 1.269413 GCGGCCATACATGTAGTACGT 60.269 52.381 11.91 0.00 35.05 3.57
352 353 2.658285 CGGCCATACATGTAGTACGTC 58.342 52.381 11.91 0.00 35.05 4.34
353 354 2.658285 GGCCATACATGTAGTACGTCG 58.342 52.381 11.91 0.00 35.05 5.12
354 355 2.291465 GGCCATACATGTAGTACGTCGA 59.709 50.000 11.91 0.00 35.05 4.20
375 376 1.752683 TGTACAGCCCAACGTTTGTT 58.247 45.000 8.51 0.00 39.43 2.83
426 427 9.567776 TTTTGGAAACTTTTCTTTTTCTTTCCT 57.432 25.926 8.12 0.00 38.22 3.36
427 428 8.546597 TTGGAAACTTTTCTTTTTCTTTCCTG 57.453 30.769 8.12 0.00 38.22 3.86
450 451 6.665465 TGTAGTACGTCGAATCAATATCCAG 58.335 40.000 0.00 0.00 0.00 3.86
746 748 2.066262 CGTGTCACCTTAACATTCGCT 58.934 47.619 0.00 0.00 0.00 4.93
785 787 0.829990 AGAGCCTAGCAGAGCTTTCC 59.170 55.000 0.00 0.00 40.11 3.13
923 925 4.162690 GACACCCTAGCCTGCCCG 62.163 72.222 0.00 0.00 0.00 6.13
924 926 4.715130 ACACCCTAGCCTGCCCGA 62.715 66.667 0.00 0.00 0.00 5.14
962 964 1.453155 CTCCTCCATTTTCACCACGG 58.547 55.000 0.00 0.00 0.00 4.94
981 986 1.000771 CAGTCGACAGGAGGGGAGA 60.001 63.158 19.50 0.00 0.00 3.71
982 987 1.034838 CAGTCGACAGGAGGGGAGAG 61.035 65.000 19.50 0.00 0.00 3.20
983 988 2.043852 TCGACAGGAGGGGAGAGC 60.044 66.667 0.00 0.00 0.00 4.09
984 989 3.151022 CGACAGGAGGGGAGAGCC 61.151 72.222 0.00 0.00 0.00 4.70
985 990 3.151022 GACAGGAGGGGAGAGCCG 61.151 72.222 0.00 0.00 33.83 5.52
986 991 3.663815 GACAGGAGGGGAGAGCCGA 62.664 68.421 0.00 0.00 33.83 5.54
987 992 2.837291 CAGGAGGGGAGAGCCGAG 60.837 72.222 0.00 0.00 33.83 4.63
988 993 4.150454 AGGAGGGGAGAGCCGAGG 62.150 72.222 0.00 0.00 33.83 4.63
1050 1058 1.592669 CCTCATCGTCGCCATGGAC 60.593 63.158 18.40 4.45 0.00 4.02
1161 1169 4.316645 TGGTGATGTTTCATGGCAAATTG 58.683 39.130 0.00 0.00 33.56 2.32
1202 1210 1.139853 GGGAGGCACCTGAAGATACTG 59.860 57.143 0.00 0.00 38.98 2.74
1448 1456 4.558496 CGCAACATCACCACCAAAAATACT 60.558 41.667 0.00 0.00 0.00 2.12
1449 1457 4.685628 GCAACATCACCACCAAAAATACTG 59.314 41.667 0.00 0.00 0.00 2.74
1490 1499 1.022982 GGTTCCCGTGGTTCGATTCC 61.023 60.000 0.00 0.00 42.86 3.01
1761 1773 2.124983 CGGGCACACCTGATGGAG 60.125 66.667 0.00 0.00 46.41 3.86
2041 2104 5.358442 ACGCTCATGTGAAGTATAGTCTCTT 59.642 40.000 0.00 0.00 0.00 2.85
2242 2322 2.084610 TCCTCGACAAAGACTGCATG 57.915 50.000 0.00 0.00 0.00 4.06
2264 2345 2.436646 GTCCGTGCCACCCATCAG 60.437 66.667 0.00 0.00 0.00 2.90
2265 2346 2.927856 TCCGTGCCACCCATCAGT 60.928 61.111 0.00 0.00 0.00 3.41
2266 2347 2.436646 CCGTGCCACCCATCAGTC 60.437 66.667 0.00 0.00 0.00 3.51
2267 2348 2.436646 CGTGCCACCCATCAGTCC 60.437 66.667 0.00 0.00 0.00 3.85
2268 2349 2.756400 GTGCCACCCATCAGTCCA 59.244 61.111 0.00 0.00 0.00 4.02
2269 2350 1.304282 GTGCCACCCATCAGTCCAT 59.696 57.895 0.00 0.00 0.00 3.41
2270 2351 0.749454 GTGCCACCCATCAGTCCATC 60.749 60.000 0.00 0.00 0.00 3.51
2271 2352 1.206811 TGCCACCCATCAGTCCATCA 61.207 55.000 0.00 0.00 0.00 3.07
2276 2357 1.524002 CCATCAGTCCATCACGCCT 59.476 57.895 0.00 0.00 0.00 5.52
2365 2446 6.779115 ATTTGATGTTTTAACCTTTTCGGC 57.221 33.333 0.00 0.00 35.61 5.54
2472 2582 1.613317 CGGTAGGCCACTCATCCACA 61.613 60.000 5.01 0.00 34.09 4.17
2474 2584 1.202698 GGTAGGCCACTCATCCACATC 60.203 57.143 5.01 0.00 34.09 3.06
2489 2599 0.796312 ACATCAGCGCAAGTAAACGG 59.204 50.000 11.47 0.00 41.68 4.44
2538 2648 2.365635 ATGCTCCTGGCGGTAGGT 60.366 61.111 0.00 0.00 45.43 3.08
2547 2657 2.433239 CCTGGCGGTAGGTTGTTATACT 59.567 50.000 0.00 0.00 32.99 2.12
2555 2665 3.705043 AGGTTGTTATACTCTACCGCG 57.295 47.619 0.00 0.00 34.09 6.46
2558 2668 3.313526 GGTTGTTATACTCTACCGCGAGA 59.686 47.826 8.23 1.60 35.06 4.04
2560 2670 4.063998 TGTTATACTCTACCGCGAGAGA 57.936 45.455 26.24 17.98 45.03 3.10
2562 2672 1.881591 ATACTCTACCGCGAGAGACC 58.118 55.000 26.24 0.00 45.03 3.85
2563 2673 0.179062 TACTCTACCGCGAGAGACCC 60.179 60.000 26.24 0.00 45.03 4.46
2564 2674 1.153127 CTCTACCGCGAGAGACCCT 60.153 63.158 17.47 0.00 45.03 4.34
2565 2675 1.440938 CTCTACCGCGAGAGACCCTG 61.441 65.000 17.47 0.43 45.03 4.45
2566 2676 2.439701 TACCGCGAGAGACCCTGG 60.440 66.667 8.23 0.00 0.00 4.45
2581 2924 3.385749 CTGGCGGTAGGTGGCGAAT 62.386 63.158 0.00 0.00 34.03 3.34
2631 2975 1.606313 CACCCATGAACACACCCCC 60.606 63.158 0.00 0.00 0.00 5.40
2665 3009 4.072088 GGTCGCCGCAAGAACACG 62.072 66.667 0.00 0.00 43.02 4.49
2673 3017 0.600255 CGCAAGAACACGGAGGAGTT 60.600 55.000 0.00 0.00 43.02 3.01
2674 3018 1.149148 GCAAGAACACGGAGGAGTTC 58.851 55.000 0.00 0.00 43.57 3.01
2701 3045 1.648568 TCTCTCTCATCCCCTCCACTT 59.351 52.381 0.00 0.00 0.00 3.16
2711 3055 0.547712 CCCTCCACTTCCCTCTCCAA 60.548 60.000 0.00 0.00 0.00 3.53
2714 3058 1.552792 CTCCACTTCCCTCTCCAACTC 59.447 57.143 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.876936 TGTCCTCTATATCTAAACAACGACT 57.123 36.000 0.00 0.00 0.00 4.18
265 266 3.428045 GCGTGCAATAGAGCCATCTTTTT 60.428 43.478 0.00 0.00 36.96 1.94
266 267 2.098117 GCGTGCAATAGAGCCATCTTTT 59.902 45.455 0.00 0.00 36.96 2.27
267 268 1.672881 GCGTGCAATAGAGCCATCTTT 59.327 47.619 0.00 0.00 36.96 2.52
268 269 1.303309 GCGTGCAATAGAGCCATCTT 58.697 50.000 0.00 0.00 36.96 2.40
269 270 2.997899 GCGTGCAATAGAGCCATCT 58.002 52.632 0.00 0.00 39.75 2.90
274 275 0.305922 GATGTGGCGTGCAATAGAGC 59.694 55.000 0.00 0.00 0.00 4.09
275 276 0.578683 CGATGTGGCGTGCAATAGAG 59.421 55.000 0.00 0.00 0.00 2.43
276 277 1.428370 GCGATGTGGCGTGCAATAGA 61.428 55.000 0.00 0.00 0.00 1.98
341 342 4.497006 GGCTGTACATTCGACGTACTACAT 60.497 45.833 19.67 0.00 39.96 2.29
342 343 3.181507 GGCTGTACATTCGACGTACTACA 60.182 47.826 19.67 6.88 39.96 2.74
343 344 3.357897 GGCTGTACATTCGACGTACTAC 58.642 50.000 19.67 13.46 39.96 2.73
344 345 2.355756 GGGCTGTACATTCGACGTACTA 59.644 50.000 19.67 9.53 39.96 1.82
345 346 1.133790 GGGCTGTACATTCGACGTACT 59.866 52.381 19.67 0.00 39.96 2.73
346 347 1.135315 TGGGCTGTACATTCGACGTAC 60.135 52.381 14.59 14.59 39.75 3.67
347 348 1.175654 TGGGCTGTACATTCGACGTA 58.824 50.000 0.00 0.00 0.00 3.57
348 349 0.319083 TTGGGCTGTACATTCGACGT 59.681 50.000 0.00 0.00 0.00 4.34
349 350 0.719465 GTTGGGCTGTACATTCGACG 59.281 55.000 0.00 0.00 0.00 5.12
351 352 0.319083 ACGTTGGGCTGTACATTCGA 59.681 50.000 0.00 0.00 0.00 3.71
352 353 1.153353 AACGTTGGGCTGTACATTCG 58.847 50.000 0.00 0.00 0.00 3.34
353 354 2.292292 ACAAACGTTGGGCTGTACATTC 59.708 45.455 7.76 0.00 34.12 2.67
354 355 2.303175 ACAAACGTTGGGCTGTACATT 58.697 42.857 7.76 0.00 34.12 2.71
400 401 9.567776 AGGAAAGAAAAAGAAAAGTTTCCAAAA 57.432 25.926 12.80 0.00 43.58 2.44
401 402 8.998377 CAGGAAAGAAAAAGAAAAGTTTCCAAA 58.002 29.630 12.80 0.00 43.58 3.28
402 403 8.154203 ACAGGAAAGAAAAAGAAAAGTTTCCAA 58.846 29.630 12.80 0.00 43.58 3.53
403 404 7.676004 ACAGGAAAGAAAAAGAAAAGTTTCCA 58.324 30.769 12.80 0.00 43.58 3.53
404 405 9.302345 CTACAGGAAAGAAAAAGAAAAGTTTCC 57.698 33.333 3.88 3.88 42.14 3.13
405 406 9.856488 ACTACAGGAAAGAAAAAGAAAAGTTTC 57.144 29.630 0.00 0.00 37.45 2.78
408 409 8.610035 CGTACTACAGGAAAGAAAAAGAAAAGT 58.390 33.333 0.00 0.00 0.00 2.66
409 410 8.610035 ACGTACTACAGGAAAGAAAAAGAAAAG 58.390 33.333 0.00 0.00 0.00 2.27
410 411 8.496707 ACGTACTACAGGAAAGAAAAAGAAAA 57.503 30.769 0.00 0.00 0.00 2.29
411 412 7.043192 CGACGTACTACAGGAAAGAAAAAGAAA 60.043 37.037 0.00 0.00 0.00 2.52
412 413 6.418819 CGACGTACTACAGGAAAGAAAAAGAA 59.581 38.462 0.00 0.00 0.00 2.52
413 414 5.916883 CGACGTACTACAGGAAAGAAAAAGA 59.083 40.000 0.00 0.00 0.00 2.52
414 415 5.916883 TCGACGTACTACAGGAAAGAAAAAG 59.083 40.000 0.00 0.00 0.00 2.27
415 416 5.830912 TCGACGTACTACAGGAAAGAAAAA 58.169 37.500 0.00 0.00 0.00 1.94
416 417 5.437289 TCGACGTACTACAGGAAAGAAAA 57.563 39.130 0.00 0.00 0.00 2.29
417 418 5.437289 TTCGACGTACTACAGGAAAGAAA 57.563 39.130 0.00 0.00 0.00 2.52
418 419 5.181811 TGATTCGACGTACTACAGGAAAGAA 59.818 40.000 0.00 0.00 0.00 2.52
419 420 4.696877 TGATTCGACGTACTACAGGAAAGA 59.303 41.667 0.00 0.00 0.00 2.52
420 421 4.978186 TGATTCGACGTACTACAGGAAAG 58.022 43.478 0.00 0.00 0.00 2.62
421 422 5.375417 TTGATTCGACGTACTACAGGAAA 57.625 39.130 0.00 0.00 0.00 3.13
422 423 5.571784 ATTGATTCGACGTACTACAGGAA 57.428 39.130 0.00 0.00 0.00 3.36
423 424 6.072838 GGATATTGATTCGACGTACTACAGGA 60.073 42.308 0.00 0.00 0.00 3.86
424 425 6.084925 GGATATTGATTCGACGTACTACAGG 58.915 44.000 0.00 0.00 0.00 4.00
425 426 6.665465 TGGATATTGATTCGACGTACTACAG 58.335 40.000 0.00 0.00 0.00 2.74
426 427 6.261603 ACTGGATATTGATTCGACGTACTACA 59.738 38.462 0.00 0.00 0.00 2.74
427 428 6.666417 ACTGGATATTGATTCGACGTACTAC 58.334 40.000 0.00 0.00 0.00 2.73
476 477 6.758886 AGAAGAAACAGATCGTTATGATGGTC 59.241 38.462 0.00 0.00 37.47 4.02
746 748 5.221048 GCTCTGCTTAACACCAAAGAAAGAA 60.221 40.000 0.00 0.00 0.00 2.52
785 787 2.815647 GCTCCCACGAGAAAGGCG 60.816 66.667 0.00 0.00 38.52 5.52
856 858 3.064134 GCTTTAGGTCTCGGCTTTTGATC 59.936 47.826 0.00 0.00 0.00 2.92
962 964 2.680352 TCCCCTCCTGTCGACTGC 60.680 66.667 17.92 0.00 0.00 4.40
981 986 2.359230 GCTTCTGCAACCTCGGCT 60.359 61.111 0.00 0.00 39.41 5.52
982 987 3.435186 GGCTTCTGCAACCTCGGC 61.435 66.667 0.00 0.00 41.91 5.54
983 988 1.377725 ATGGCTTCTGCAACCTCGG 60.378 57.895 0.00 0.00 41.91 4.63
984 989 1.651240 CCATGGCTTCTGCAACCTCG 61.651 60.000 0.00 0.00 41.91 4.63
985 990 1.941999 GCCATGGCTTCTGCAACCTC 61.942 60.000 29.98 0.00 41.91 3.85
986 991 1.980772 GCCATGGCTTCTGCAACCT 60.981 57.895 29.98 0.00 41.91 3.50
987 992 2.575461 GCCATGGCTTCTGCAACC 59.425 61.111 29.98 0.00 41.91 3.77
988 993 2.180017 CGCCATGGCTTCTGCAAC 59.820 61.111 33.07 2.52 41.91 4.17
1202 1210 1.975363 GCTGCCTGCACTCGATGAAC 61.975 60.000 0.00 0.00 42.31 3.18
1448 1456 1.985473 AAAGCATGCAGGAGTTGACA 58.015 45.000 21.98 0.00 0.00 3.58
1449 1457 2.352127 GGAAAAGCATGCAGGAGTTGAC 60.352 50.000 21.98 3.05 0.00 3.18
1490 1499 3.433709 TGACATTTTGTGCGTGTTCTTG 58.566 40.909 0.00 0.00 0.00 3.02
1769 1781 2.126417 GATGATGCATGGCGACTGGC 62.126 60.000 2.46 0.00 42.51 4.85
1785 1797 1.303309 GCGGTCTGAAGGATTGGATG 58.697 55.000 0.00 0.00 0.00 3.51
2047 2120 9.817809 GACTATACTTCACATGGTTATCAGAAA 57.182 33.333 0.00 0.00 0.00 2.52
2048 2121 9.201989 AGACTATACTTCACATGGTTATCAGAA 57.798 33.333 0.00 0.00 0.00 3.02
2264 2345 2.106332 CCGGTAGGCGTGATGGAC 59.894 66.667 0.00 0.00 0.00 4.02
2265 2346 1.546589 AAACCGGTAGGCGTGATGGA 61.547 55.000 8.00 0.00 42.76 3.41
2266 2347 0.675522 AAAACCGGTAGGCGTGATGG 60.676 55.000 8.00 0.00 42.76 3.51
2267 2348 0.446222 CAAAACCGGTAGGCGTGATG 59.554 55.000 8.00 0.00 42.76 3.07
2268 2349 0.675522 CCAAAACCGGTAGGCGTGAT 60.676 55.000 8.00 0.00 42.76 3.06
2269 2350 1.301874 CCAAAACCGGTAGGCGTGA 60.302 57.895 8.00 0.00 42.76 4.35
2270 2351 1.571215 GACCAAAACCGGTAGGCGTG 61.571 60.000 8.00 1.40 40.22 5.34
2271 2352 1.301953 GACCAAAACCGGTAGGCGT 60.302 57.895 8.00 1.53 40.22 5.68
2276 2357 0.039256 CTCGTCGACCAAAACCGGTA 60.039 55.000 8.00 0.00 40.22 4.02
2338 2419 8.067189 CCGAAAAGGTTAAAACATCAAATTTGG 58.933 33.333 17.90 5.67 34.51 3.28
2365 2446 5.789521 AGGGTCAAATTGGGTTAAAATTCG 58.210 37.500 0.00 0.00 0.00 3.34
2415 2500 1.767088 GGTAGGGCGGTAGGAAAAGAT 59.233 52.381 0.00 0.00 0.00 2.40
2424 2509 1.152963 GTCGGTAGGTAGGGCGGTA 60.153 63.158 0.00 0.00 0.00 4.02
2472 2582 0.953471 TGCCGTTTACTTGCGCTGAT 60.953 50.000 9.73 0.00 0.00 2.90
2474 2584 0.521242 GATGCCGTTTACTTGCGCTG 60.521 55.000 9.73 3.92 0.00 5.18
2489 2599 0.248565 TGACAGCAGAGGACAGATGC 59.751 55.000 0.00 0.00 40.29 3.91
2538 2648 4.272018 GTCTCTCGCGGTAGAGTATAACAA 59.728 45.833 20.43 1.43 43.02 2.83
2547 2657 1.451567 CAGGGTCTCTCGCGGTAGA 60.452 63.158 6.13 6.76 0.00 2.59
2563 2673 2.023414 TATTCGCCACCTACCGCCAG 62.023 60.000 0.00 0.00 0.00 4.85
2564 2674 2.023414 CTATTCGCCACCTACCGCCA 62.023 60.000 0.00 0.00 0.00 5.69
2565 2675 1.300697 CTATTCGCCACCTACCGCC 60.301 63.158 0.00 0.00 0.00 6.13
2566 2676 0.179092 AACTATTCGCCACCTACCGC 60.179 55.000 0.00 0.00 0.00 5.68
2581 2924 0.395312 GGCCCCGCTGCTTATAACTA 59.605 55.000 0.00 0.00 0.00 2.24
2631 2975 1.364171 CCGCGGTAGGGAGAAGATG 59.636 63.158 19.50 0.00 0.00 2.90
2654 2998 0.600255 AACTCCTCCGTGTTCTTGCG 60.600 55.000 0.00 0.00 0.00 4.85
2665 3009 3.456277 AGAGAGAGAGAGAGAACTCCTCC 59.544 52.174 12.89 7.82 42.97 4.30
2673 3017 2.711009 GGGGATGAGAGAGAGAGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
2674 3018 2.713167 AGGGGATGAGAGAGAGAGAGAG 59.287 54.545 0.00 0.00 0.00 3.20
2675 3019 2.711009 GAGGGGATGAGAGAGAGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
2676 3020 2.224867 GGAGGGGATGAGAGAGAGAGAG 60.225 59.091 0.00 0.00 0.00 3.20
2701 3045 0.787084 ACAGAGGAGTTGGAGAGGGA 59.213 55.000 0.00 0.00 0.00 4.20
2711 3055 2.530701 ACGATGGAGAAACAGAGGAGT 58.469 47.619 0.00 0.00 0.00 3.85
2714 3058 4.787598 CAAAAACGATGGAGAAACAGAGG 58.212 43.478 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.