>input_sequence_69677
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-----------------------------------------------ATGGCGAGAGTTGAAGCGGTGGTCGTCTGCCTC
CTCATCGTCGCCATGGACGTCGTCGCCGGCGTCCTTGGAATCCACGCGGAGAAAGCTCAGAGCCAGGTAGACCGTGTCGG
CAAAAAGCAGGGATTTCGTTGTTGTCTGGTGATGTTTCATGGCAAATTGTGATTACTCTCGTCTTGCAGGGGAGGCACCT
GAAGATACTGTTCATCGAGTGCAGGCAGCCTGTCCCACAGGCTTACAAGCTCGGCATCGCGGCGGCCGCGGTGCTGGCTG
CGTCGCACGCCATCGCCAACATCGTCGGCGGCTGCTCCTGCACGTGGCCCTGCTGCTCCGGCGGCCGGCGCTCGTCGCCC
AACCGGCAGATGGCGTCCTTCGCCCTGGTCCTCACATGGTACGCTCCTGTCCTACGCACGCCGAGCATGAGCCGCAACAT
CACCACCAAAAATACTG-TCAACTCCTGCATGCTTTTCCGGTTCCCGTGGTTCGATTCCAAGAACACGCACAAAATGTCA
ACATGTTTATGATTGCCAGGATGGTTCTGCTGGTGGGGCTGGCGCTGCTGATCCTCGGTGCGCTGCCGAACTCCAAGAAG
GTAATGGCGGAGTGCGGGGTGGTGCGGCACCGCTTCCTCTCCATCGGCGGCATCCTCTGCTTCGTGCACGCCGTCTTCTG
CCTCGTCTACTACGTGTCCGCCAACGCCGCCGCGCGGGAGGAAGGCCGTGGGTCTGGGTCCAAGCCCGCCGGCGGGCAC-
--ACCTGA------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G220600
AGAAGACGGGGTAAAAAAGGAAGTACAGTAGAAACTGAGCGCCATCTCCGAAAGTCGTTGTTTAGATATAGAGGACATGT
TTGCTTATAACAATAAAGTCAAGACGTTTTTAAAATGTTGTTGCCCTCAAGGACAACAAAACTTCCTCCGTCCTGGATCG
ACACCCTACATCCATCGTCGTACAGTAGAAACTGAGCACCATCTCCGAAAGCCACACCACCACACACCAGATGGCTCTAT
TGCATTTCCCTCAAAAAAGAAAGAAAAAAAGATGGCTCTATTGCACGCCACATCGCCCATTCAGCTAGCAAAGCGACTGT
TTCGCAGGCTGGCGGCCATACATGTAGTACGTCGAATGTACAGCCCAACGTTTGTTTACCTTTTCTTTTTCTTTCCTTTT
TTTTGGAAACTTTTCTTTTTCTTTCCTGTAGTACGTCGAATCAATATCCAGTACCTTTTTCAGCTACGTATATATAGACC
ATCATAACGATCTGTTTCTTCTGACCATAACTTGAACTTGAAGAATAGATTGGGACCATCAGTATGAAAGTTGCACAA-T
TTGAACTAATACAGAGCTGTAAGTCTATGGATTACGGATAAACTTTAGTGAGGATGCAGATTAATCGTTGGAGGTAATCC
TGGTGAATGGGATTCAGGAAAATCTCACTCATAGAGTGATATGATGGGTAATTAGCAGTGCCATCGATGTCTCGAGCCCT
GTCGGCTCGTGTCACCTTAACATTCGCTTCTTTCTTTGGTGTTAAGCAGAGCCTAGCAGAGCTTTCCGCCTTTCTCGTGG
GAGCACTGAGAGGAATCGGTAAAGAAAACCAACGCAGAGATATTAAACAATAAAGAAGATCAAAAGCCGAGACCTAAAGC
ATCTTCGCTGCACACTCGTCTAGTAGCGACACCCTAGCCTGCCCGAGTCGTGCCCACGTCGCCGCTCCTCCATTTTCACC
ACGG---CAGTCGACAGGAGGGGAGAGCCGAGG---TTGCAGAAGCCATGGCGAGAGTTGAAGCGGTGGTCGTCTGCCTC
CTCATCGTCGCCATGGACGTCGTCGCCGGCGTCCTTGGAATCCACGCGGAGAAAGCTCAGAGCCAGGTAGACCGTGTCGG
CAAAAAGCAGGGATTTCGTTGTTGTCTGGTGATGTTTCATGGCAAATTGTGATTACTCTCGTCTTGCAGGGGAGGCACCT
GAAGATACTGTTCATCGAGTGCAGGCAGCCTGTCCCACAGGCTTACAAGCTCGGCATCGCGGCGGCCGCGGTGCTGGCTG
CGTCGCACGCCATCGCCAACATCGTCGGCGGCTGCTCCTGCACGTGGCCCTGCTGCTCCGGCGGCCGGCGCTCGTCGCCC
AACCGGCAGATGGCGTCCTTCGCCCTGGTCCTCACATGGTACGCTCCTGTCCTACGCACGCCGAGCATGAGCCGCAACAT
CACCACCAAAAATACTG-TCAACTCCTGCATGCTTTTCCGGTTCCCGTGGTTCGATTCCAAGAACACGCACAAAATGTCA
ACATGTTTATGATTGCCAGGATGGTTCTGCTGGTGGGGCTGGCGCTGCTGATCCTCGGTGCGCTGCCGAACTCCAAGAAG
GTAATGGCGGAGTGCGGGGTGGTGCGGCACCGCTTCCTCTCCATCGGCGGCATCCTCTGCTTCGTGCACGCCGTCTTCTG
CCTCGTCTACTACGTGTCCGCCAACGCCGCCGCGCGGGAGGAAGGCCGTGGGTCTGGGTCCAAGCCCGCCGGCGGGCAC-
--ACCTGATGGAGCTCTCCGGCCAGTCGCCATGCATCATCCAATCCTTCAGACCGCGTGTTGCTGCCT------------
--------------------AGATAGGGTGTGATTCTGTGTGCATGTAATTACGGATGTTGTGGCATCGTGTTGCCGAGC
TGCGCAGTGATACTCTTTCCAGTTTTGTCGTGTTCAATAAATGAAATCTTTCGGATTG-------------------CCA
GGATATTGAAGGATGTGCAGTCGTAAGAGGCCGATACTTCCGGGTGACGACGCGTTCATGTGAGCGATGAACTGATGACA
CGCTCATGTGAAGTATAGTCTCTTTTTT----------TTTTCTGATAACCATGTGAAGTATAGTCTGATGTTCACCTTT
CTCACTCGGTATCGTTACCCTCGGCCGACAGAGCTCGGTGCCTCGGTGCTCGGTGATG---GTGGATTTAGCGGAGGTCC
TGTCCCATCAGATTTTTGCCGACCAT----GTATGTATGGCCTGAAAGGCTTACTTCCGAAATCCTCGACAAAGACTGCA
TGCTGAGTCC-GTGCCACCCATCAGTCCATCACGCCTACCGGTTTTGGTCGACGAGCTCGTGGATTCGCATCCACTGTGC
CAGCCATTAGAGTGGCAGCCAAATTTGATGTTTTAACCTTTTCGGCGAATTTTAACCCAATTTGACCCTTTTTTAAGAAA
AAAA----CAAGATCTAACATCTTTTCCTACCGCC------------------------CTACCTACCGACGAGGCCC-T
GGCGGTAGGCCACTCATCCACATCAGCGCAAGTAAACGGCATCTGTCCTCTGCTGTCAAGCCTACCGCCGATGCTCCTGG
CGGTAGGTTGTTATACTCTACCGCGAGAGACCCTGG--------------------------------------------
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-----------------------------CGGTAGGTGGCGAATAGTTATAAGCAGCGGGGCCGG-TCGCGGGTCCCACC
CATGAACACACCCCCATCTTCTCCCTACCGCGGTCGCCGCAAGAACACGGAGGAGTTCTCTCTCTCTCTCTCATCCCCTC
CACTTCCCTCTCCAACTCCTCTGTTTCTCCATCGTTTTTGCGGATCGAGATAGCTCCAAA
>chr2A_18
-----------------AGGAAGTACAGTAGAAACTGAGCGCCATCTCCGAAGGTCGTTGTTTAGATATAAAGGACATGT
TTGCTTATAACAATAAAGTCAAGACGTTTTTAAAA-GTTGTTGCCCTCAAGGACAACAAAACTTCGTCCGTCCTGGATCG
ACACCCTACATCCATCGTCGTACAGTAGAAACTGAGCACCATGTTCGAAAGCCACACCACCACACACCAGATGGCT----
-------------------------------------CCATTGCACGCCACGTCGCCCATTCAGCTAGCAAAGCGACTCT
TTCGCAGGCTGGCGGCCATACGCCAGCGCGG----ATGTACAGCCCAACGTTTGTATACCTTTTCTTTTTCTTTCCTGTA
GGACC------------------------------TCGAATCAATATCCAATACCTTTTTCAGCTACGTATATATACACC
ATCATAACGATCTGTTTCTTCTGACCATAACTTGAACTTGAAGAATAGATTGGGACCATCAGTATGAAAGTTGCACAATT
TTGAACTAATACAGAGCTGTAAGTCTATGGATTACGGCTAAACTTTAGTGAGGATGAAGATTAATCGTTGGAGGTAATCC
AGGTAAGTGGGATTCAGGAAAATCTCACTCATAGAGTGATATGATGGGTAATTAGCAGTGCCATCGATGTCTCGAGCCCT
GTCGGCTCGTGTCACCTTAACATTCGCCTCTTTCTTTGGTGTTAAGCAGAGCCTAGCAGAGCTTTCTGCCTTTCTCGTGG
GAGCACTGAGAGGAATCGGTAAAGAAAACCAACGCAGAGATATTAAACAACAAAGAACAATAAAAGCCGAGACCTAAAGC
ATCTTCGCTGCACACTCGTCTAGTAGCGACACCCAAGCCTGCCC--GTCGTGCCCACGTCGCTGCTCCTCCATTTTCACC
ACGACGACAGTGGACAGGAGGGGAGGAGAACCAAGATTGCAGAAGCCATGGCGAGAGTTGAAGCGGTGGTCGTCTGCCTC
CTCATCGTCGCCATGGATGTCGTTGCCGGCGTCCTTGGAATCCACGCGGAGAAAGCTCAGAGCCAGGTA-ACCGTGTCGT
CAAAAAGCAGGGATTTCGTTGTTGTCTGGTGATGTTTCATGGCAAATTTTGATTACTCTCGTCTTGCAGGGGAGGCACCT
GAAGATACTTTTCATCGAGTGCAGGCAGCCTGTCCCACAGGCTTACAAGCTCGGCATCGCGGCGGCCGCGGTGCTGGCTG
CGTCGCACGCCATCGCCAACATCGTCGGCGGCTGCTCCTGCACGTGGCCCTGCTGCTCCGGCGGCCGGCGCTCGTCGCCC
AACCGCCAGATGGCGTCCTTCGCCCTGGTCCTCACATGGTACGCTCCTGTCCTACGCACGCCGAGCATGAGCCGCCACAT
CACCATCAAAATACTATATCAAGTCCTGCATGCTTTTCCGGTTCCCGTGGTTCGATTCGAAGAACACGTACAAAATGTCA
ACATGTTTATGATTGCCAGGATGGTTCTGCTGGTGGGGCTGGCGCTGCTGATCCTCGGTGCGCTGCCGAACTCCAAGAAG
GTAATGGCGGAGTGCGGGGTGGTGCGGCACCGCTTCCTCTCCATCGGCGGCATCCTCTGCTTCGTGCACGCCGTCTTCTG
CCTCGTCTACTACGTGTCCGCAAACGCCGCCGCGCGGGAGGAAGGCCGTGGGTCTGGGTCCAAGCCCGCCGGCGGGCAC-
--ACCTGATGGATCTCTCCGACCAGTCGCCATGCATAATCCAATCCTTCAGACCGCGTGTTGCTGCCTAGGCCTTCTTCG
ATATAATTTTCTCCGCTGCGAGATAGGGTGTGATTCTGTGTGCATGTAATTACGGGTGTTGTGGCATCGTGTTGCCGAGG
TGCGCAGTGATACTCTTTCCAGTTTTGTCGTGTTCAATAAGTGAAATCTTTCGGATTGCTGGCTAGTTTCAGTATTCCCA
GGATATTGAAGGATGTGCAGTCGTAAGAGGCCGATACTTCCGGGTGACGACGCGTTCATGTGAGCGATGAACTGATGACA
CGCTCATGTGAAGTATAGTCTCTCTCTCTCTTTTTTTCT--TCTGATAACCATGTGAAGTATAGTCTGATGTTCACCTTT
CTCACTCGGTATCGTCACCCTCGGCCGACAGAGCTCGGTGCCTCGGTGCTCGGTGATG---GTGGATTTAGCGGAGGTCC
TGTCCCATCAGATTTTTGCCGACCAT----GTATGTATGGCCTGAAAGGCTTACTTCCGAAATCCTCGACAAAGACTGCA
TCCTGAGTCC-GTGCCACCCATCA--------CGCCAACCGGTTTTGGTGGACGAGCTCGTGGATTGGCATCCACTGTGC
CAGCCATTAGAGTGGCAGTCAAATTTGATGTTTTAACCTTTTCGGTGAATTTTAACCCAATTTGACCCTTTTTAAAGAAA
AAAAAATTCAAGATCTAACCTCTTTTCCCACCGCCAGAGACCCTAACGGTAGGGTATAACTACCTACCGACGAGGCCCCT
GGCGGTAGGCCACTCATCCACGTTAGCGCAAGTAAACGACATCTGTCCTCTGCTGTCAAGCCTACCGCCGATGCTCCTGG
CGGTAGGCTGTTATACCCTACCGCCAGTTCCTTAATACGCTGTCGGGAGGGACGGATTTTGATTGGCATTGTCTACCTCC
GAGAGGAAGATCAGGTGGCATCTTACTTGGGGTTAGATGTGAGACGCTGGAAGTTCGGAGCGTGGTCATGGAAGATTTCG
CTGTCAAATTTTGGGTTAGGTCCAAGATCGATGGATTTAATTGGACGCTGGTGGCGGTATATGGTGCGGTCCAAGATCTA
ACCTCTTTTCCTATCGCCAGAGACCCCGACGGTAGGTGGCGAACAGTTATAAGCAGCGGGGCCGGCTCGTGGGTCCCACC
CATGAACACACCCCTATCTTCTCCCTACCGCGGTCGCTGCAAGAACACAGAGGAGT----TCTCTCTCTCTCATCCCCTC
CACTCCCCTCTCCATCTTCTCTGTTTCTCCATCGTTTTTGCGGATCGAGATAGCTCCAAA
>chr2B_70
GTACAGTAGAAACTGAGCACCATCTCCGAAAGAGG----------------------------------------CATGT
TTGCT--TAACAATAAAGTCAAGGCGTTTTTAAAATGTTGTTGCCCTTAAGGACAACAAAACTTCCTCCGTCCTGGATCG
ACACCCTATATCCATCGTCGTACAGTAGAAACTGAGCACCATCTCCGAAAGCCACACCACCGCACACCAGATGGTT----
-------------------------------------CTATTGCACGCCACATCGCCCATTCAGCTAGCAAAGCGGCTGT
TTCGCAGGCTGGCGGCCATACGCCAGCGCGG----ATGCACAGCCCAACGTTTGTATACCTTTTGTTTCTCTTTCTTC--
----------------------------TAGTACGTCGAATCAGTCTCCAATGCCTTTTCCAGCTACGTATATACACACC
ATCATAACGATCTGTTTCTTCTGACCATAACTTGAACTTGAAGAATAGATTGGGACCATCAGTATGAAAGTTGCACAA-T
TTGAAGTAATACAGAGCTGTAAGTCTATGGATTACGGATAAACTTTAGTGAGGATGCAGATTAATCGCTGGAGGTAATCC
TGGTGAATGGGATTCAGGAAAATCTCACTCATAGAGTGATATGACGGGTAATTAGCAGTGCTATCGATGTCTCGCGCCCT
GTCGGCTCGTGTCACCTTAACATTCGCCTCTTTCTTTGGTGTTAAGCAGAGCCTAGCAGAGCTT-CTGCCTTTCTGGTGG
GAGCACTGAGAGGAATCGGTAAAGAAAACCAACGCAGAGATATTAAACAATAAAGAACATCAAAAGCCGAGACCTAAAGC
ATCTTCGCTGCACACTCGTCTAGTAGCGACACCCTAGCCTGCCC--GTCGTGCCCACGCCGCCGTTCCTCCATTTTCACC
ACAACGACAGTCGACAGGAGGGGAGGAGAACCAAGGTTGTAGAAGCCATGGCGAGAGTTGAAGCGGTGGTCGTCTGCCTC
CTCATCGTCGCCATGGATGTCGCCGCCGGCGTCCTTGGAATTCACGCGGAGAAAGCTCAGAGCCAGGTAGGCCGTGTCGG
CAAGAAGCAGGGATTTCGTTGTTGTCTGGTGATGTTTCATGGCAAAATTTGATTACTCTTGTCTTGCAGGGGAGGCACCT
GAAGATACTTTTCATCGAGTGCAGGCAGCCTGTCCCACAGGCTTACAAGCTCGGCATCGCGGCGGCCGCGGTGCTGGCTG
CGTCGCACGCCATCGCCAATATCGTCGGCGGCTGCTCCTGCACGTGGCCCTGCTGCTCCGGCGGCCGGCGCTCGTCGCCC
AACCGGCAGATGGCGTCCTTCGCCCTGGTCCTCACATGGTACGCTCCTGTCCTACGCACGCCAAGCATGAGCCGCAACAT
CACCACCAAAAATAC-TATCAACTCCTGCATGCTTTTCCGGTTCCCGTGGTTCGATTCGAAGAACACGCACAAAATGTCA
ACATGTTTATGATTGCCAGGATGGTTCTGCTGGTGGGACTGGCGCTGCTGATCCTCGGTGCGCTGCCGAACTCCAAGAAG
GTAATGGCGGAGTGCGGGGTGGTGCGGCACCGCTTCCTCTCCATCGGCGGCATCCTTTGTTTCGTGCACGCCGTCTTCTG
CCTCGTGTACTACGTGTCCGCCAACGCCGCCGCGCGGGAGGAAGGCCGTGGGTCTGGGTCCAAGCCCGCCGGCGTGTAGT
ATACCTGATGGATCTCTCCGACCAGTCGCCATGCA---------CCATCAGACCGCGTGTTGCTGCCTATGCCTTGTTCG
GTAAAATTTTCTCCGCTGCGAGATAGGGTGTGATTCTGTGTGCATGTAATTACGGATGTTGTGGCATCGTGTTGCCGAGC
TGCGCAGTGATACTCTTTCCAGTTTTGTCGTGTTCAATAAATG-AATCTTTCGGATTGCTGGCTAGTTTCAGTATTCCCA
GGATATTGAAGGATGTGCAGTCGTAAGAGGCCGATACTTCTGGGTGACGACGCGTTCATTTGAGTGATGAACTGATGACA
CGCTCATGTGAAGTATAGTCTCTCTTTT----------T--TCTGATAACCATGCGAAATATAGTCTGATGTTCACCTTT
CTCACTCGGTATCGTTACCCTCGGCCGACAGAGCTCGGTGCATCGGCCAGGAAAAAAAGATGTGGATTTAGCGGAGGTCC
TGT-----CAGATTTTTGCCGACTAGGGAAGTATGTATGGCCTGAAAGG----CTTCCGAAATCCTCGACAAAGACTGCA
TCCTGAGTCCCGTGCGACCCATCA--------CGCCAACCGGTTGTGGTCGATGAGCTCGTGGATTCGCATCCACTGTGC
CAGCC---------------------------------------------------------------------------
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>SNPs
SS-SSSSS-SSSSSS-S-----------------------------------S-----------------S---------
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----------------------------------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
---------------------SSSSSSSSS-SSSS--------------------S---------------------S-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S-------------------------S---
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---------------------------S--------------------------------------S-------------
---------------------------------------------------------S----------------------
--------------------------------------------SS----------------------------------
---S---------------------SSSSSSSS-----------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------------S-------------------------------
---------S----------------------------------------------------------------------
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---------------SS-----------------------------------------S---------------------
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------------S-------S---------------S-------------------------------------------
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-----------------------S---------------SS---------------------------------------
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-S----------------------SSSSSSSS----S-------------------------------------------
------------------S--------------------------S---------------------------S------
-------------------S--------S---------------------------------------------------
---------------------S-S--------------S-----------------------------------------
-------S--------S-------S--SSS-SSSSS--------------------------------------------
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-------------------------------------------S-------------------------S----------
--------------S----------------------S----------S-------SSSS--------------------
----S---------S--S------------------------------------------
>forward_348
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--------CTGGCGGCCATACATGTAGT----------------------------------------------------
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>reverse_2357
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------------------------------------TACCGGTTTTGGTCGACGAG------------------------
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