Multiple sequence alignment - TraesCS2D01G220400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G220400 chr2D 100.000 2653 0 0 1 2653 187649546 187646894 0.000000e+00 4900.0
1 TraesCS2D01G220400 chr2D 87.692 195 24 0 1001 1195 187969805 187969611 7.390000e-56 228.0
2 TraesCS2D01G220400 chr2A 90.039 2038 106 34 702 2653 200627461 200625435 0.000000e+00 2549.0
3 TraesCS2D01G220400 chr2A 87.692 195 24 0 1001 1195 200920151 200919957 7.390000e-56 228.0
4 TraesCS2D01G220400 chr2B 90.775 1832 117 25 456 2272 243791377 243789583 0.000000e+00 2399.0
5 TraesCS2D01G220400 chr2B 88.718 195 22 0 1001 1195 243830778 243830584 3.410000e-59 239.0
6 TraesCS2D01G220400 chr2B 80.695 259 39 8 2387 2640 243789535 243789283 9.690000e-45 191.0
7 TraesCS2D01G220400 chr4B 94.581 406 22 0 1 406 79197398 79196993 1.730000e-176 628.0
8 TraesCS2D01G220400 chr4B 91.603 131 11 0 1061 1191 41743730 41743860 5.830000e-42 182.0
9 TraesCS2D01G220400 chr3D 94.349 407 21 2 1 406 551400659 551400254 8.060000e-175 623.0
10 TraesCS2D01G220400 chr3D 93.171 410 22 5 1 406 433609222 433609629 4.890000e-167 597.0
11 TraesCS2D01G220400 chr5D 94.132 409 19 5 1 406 6004658 6004252 3.750000e-173 617.0
12 TraesCS2D01G220400 chr1D 93.643 409 21 5 1 406 84508791 84508385 8.120000e-170 606.0
13 TraesCS2D01G220400 chr1B 93.154 409 23 5 1 406 670050930 670051336 1.760000e-166 595.0
14 TraesCS2D01G220400 chr7B 93.120 407 25 3 3 406 418833054 418832648 6.320000e-166 593.0
15 TraesCS2D01G220400 chr7B 88.060 134 16 0 1061 1194 677538701 677538568 2.730000e-35 159.0
16 TraesCS2D01G220400 chr7B 89.583 48 5 0 568 615 368197929 368197882 7.930000e-06 62.1
17 TraesCS2D01G220400 chr7D 92.718 412 24 6 1 409 49632892 49632484 8.180000e-165 590.0
18 TraesCS2D01G220400 chr5B 92.944 411 19 10 1 406 591444105 591443700 8.180000e-165 590.0
19 TraesCS2D01G220400 chr6D 86.364 176 24 0 1441 1616 463478762 463478587 2.700000e-45 193.0
20 TraesCS2D01G220400 chr6D 82.418 182 32 0 1434 1615 24001851 24002032 2.730000e-35 159.0
21 TraesCS2D01G220400 chr6B 86.364 176 24 0 1441 1616 706746999 706746824 2.700000e-45 193.0
22 TraesCS2D01G220400 chr6B 78.440 218 35 8 407 616 566341168 566341381 5.960000e-27 132.0
23 TraesCS2D01G220400 chr6A 85.795 176 25 0 1441 1616 609983186 609983011 1.250000e-43 187.0
24 TraesCS2D01G220400 chr6A 82.682 179 29 2 1434 1611 22522968 22523145 9.830000e-35 158.0
25 TraesCS2D01G220400 chr6A 86.207 58 7 1 571 627 422376106 422376163 7.930000e-06 62.1
26 TraesCS2D01G220400 chr4D 90.840 131 12 0 1061 1191 29176724 29176854 2.710000e-40 176.0
27 TraesCS2D01G220400 chr7A 86.957 138 16 1 1061 1196 690918422 690918285 1.270000e-33 154.0
28 TraesCS2D01G220400 chr3A 81.319 182 32 2 1434 1614 746261686 746261866 2.130000e-31 147.0
29 TraesCS2D01G220400 chr1A 80.928 194 30 6 1425 1615 21023091 21023280 2.130000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G220400 chr2D 187646894 187649546 2652 True 4900 4900 100.000 1 2653 1 chr2D.!!$R1 2652
1 TraesCS2D01G220400 chr2A 200625435 200627461 2026 True 2549 2549 90.039 702 2653 1 chr2A.!!$R1 1951
2 TraesCS2D01G220400 chr2B 243789283 243791377 2094 True 1295 2399 85.735 456 2640 2 chr2B.!!$R2 2184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.033504 ACGACATTCTTCACACGGCT 59.966 50.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1833 0.171007 GATGCAACCATTGTCCACGG 59.829 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.349843 CGACTCAACATCGACCACG 58.650 57.895 0.00 0.00 42.25 4.94
29 30 2.060326 TCGACCACGACATTCTTCAC 57.940 50.000 0.00 0.00 43.81 3.18
30 31 1.338655 TCGACCACGACATTCTTCACA 59.661 47.619 0.00 0.00 43.81 3.58
31 32 1.455786 CGACCACGACATTCTTCACAC 59.544 52.381 0.00 0.00 42.66 3.82
32 33 1.455786 GACCACGACATTCTTCACACG 59.544 52.381 0.00 0.00 0.00 4.49
33 34 0.790207 CCACGACATTCTTCACACGG 59.210 55.000 0.00 0.00 0.00 4.94
34 35 0.163788 CACGACATTCTTCACACGGC 59.836 55.000 0.00 0.00 0.00 5.68
35 36 0.033504 ACGACATTCTTCACACGGCT 59.966 50.000 0.00 0.00 0.00 5.52
36 37 1.271379 ACGACATTCTTCACACGGCTA 59.729 47.619 0.00 0.00 0.00 3.93
37 38 1.654105 CGACATTCTTCACACGGCTAC 59.346 52.381 0.00 0.00 0.00 3.58
38 39 2.000447 GACATTCTTCACACGGCTACC 59.000 52.381 0.00 0.00 0.00 3.18
39 40 1.623811 ACATTCTTCACACGGCTACCT 59.376 47.619 0.00 0.00 0.00 3.08
40 41 2.271800 CATTCTTCACACGGCTACCTC 58.728 52.381 0.00 0.00 0.00 3.85
41 42 0.242825 TTCTTCACACGGCTACCTCG 59.757 55.000 0.00 0.00 0.00 4.63
42 43 0.607217 TCTTCACACGGCTACCTCGA 60.607 55.000 0.00 0.00 0.00 4.04
43 44 0.456312 CTTCACACGGCTACCTCGAC 60.456 60.000 0.00 0.00 0.00 4.20
44 45 1.870055 TTCACACGGCTACCTCGACC 61.870 60.000 0.00 0.00 0.00 4.79
45 46 2.282674 ACACGGCTACCTCGACCA 60.283 61.111 0.00 0.00 0.00 4.02
46 47 2.181021 CACGGCTACCTCGACCAC 59.819 66.667 0.00 0.00 0.00 4.16
47 48 3.437795 ACGGCTACCTCGACCACG 61.438 66.667 0.00 0.00 41.26 4.94
48 49 4.189188 CGGCTACCTCGACCACGG 62.189 72.222 0.00 0.00 40.21 4.94
49 50 3.066814 GGCTACCTCGACCACGGT 61.067 66.667 0.00 0.00 40.21 4.83
50 51 2.643232 GGCTACCTCGACCACGGTT 61.643 63.158 0.00 0.00 40.21 4.44
51 52 1.315257 GGCTACCTCGACCACGGTTA 61.315 60.000 0.00 0.00 40.21 2.85
52 53 0.179153 GCTACCTCGACCACGGTTAC 60.179 60.000 0.00 0.00 40.21 2.50
53 54 1.167851 CTACCTCGACCACGGTTACA 58.832 55.000 0.00 0.00 40.21 2.41
54 55 0.881118 TACCTCGACCACGGTTACAC 59.119 55.000 0.00 0.00 40.21 2.90
55 56 1.080298 CCTCGACCACGGTTACACC 60.080 63.158 0.00 0.00 40.21 4.16
56 57 1.661480 CTCGACCACGGTTACACCA 59.339 57.895 0.00 0.00 38.47 4.17
57 58 0.665369 CTCGACCACGGTTACACCAC 60.665 60.000 0.00 0.00 38.47 4.16
58 59 1.665599 CGACCACGGTTACACCACC 60.666 63.158 0.00 0.00 38.47 4.61
59 60 1.446791 GACCACGGTTACACCACCA 59.553 57.895 0.00 0.00 38.47 4.17
60 61 0.035739 GACCACGGTTACACCACCAT 59.964 55.000 0.00 0.00 38.47 3.55
61 62 1.275856 GACCACGGTTACACCACCATA 59.724 52.381 0.00 0.00 38.47 2.74
62 63 1.002315 ACCACGGTTACACCACCATAC 59.998 52.381 0.00 0.00 38.47 2.39
63 64 1.352114 CACGGTTACACCACCATACG 58.648 55.000 0.00 0.00 38.47 3.06
64 65 0.390209 ACGGTTACACCACCATACGC 60.390 55.000 0.00 0.00 38.47 4.42
65 66 0.108520 CGGTTACACCACCATACGCT 60.109 55.000 0.00 0.00 38.47 5.07
66 67 1.648504 GGTTACACCACCATACGCTC 58.351 55.000 0.00 0.00 38.42 5.03
67 68 1.206371 GGTTACACCACCATACGCTCT 59.794 52.381 0.00 0.00 38.42 4.09
68 69 2.537401 GTTACACCACCATACGCTCTC 58.463 52.381 0.00 0.00 0.00 3.20
69 70 0.736636 TACACCACCATACGCTCTCG 59.263 55.000 0.00 0.00 42.43 4.04
70 71 1.226974 CACCACCATACGCTCTCGG 60.227 63.158 0.00 0.00 40.69 4.63
71 72 2.279517 CCACCATACGCTCTCGGC 60.280 66.667 0.00 0.00 40.69 5.54
72 73 2.786495 CCACCATACGCTCTCGGCT 61.786 63.158 0.00 0.00 40.69 5.52
73 74 1.452953 CCACCATACGCTCTCGGCTA 61.453 60.000 0.00 0.00 40.69 3.93
74 75 0.317938 CACCATACGCTCTCGGCTAC 60.318 60.000 0.00 0.00 40.69 3.58
75 76 0.750546 ACCATACGCTCTCGGCTACA 60.751 55.000 0.00 0.00 40.69 2.74
76 77 0.598562 CCATACGCTCTCGGCTACAT 59.401 55.000 0.00 0.00 40.69 2.29
77 78 1.401670 CCATACGCTCTCGGCTACATC 60.402 57.143 0.00 0.00 40.69 3.06
78 79 0.517755 ATACGCTCTCGGCTACATCG 59.482 55.000 0.00 0.00 40.69 3.84
79 80 0.531311 TACGCTCTCGGCTACATCGA 60.531 55.000 0.00 0.00 40.69 3.59
80 81 1.369448 CGCTCTCGGCTACATCGAC 60.369 63.158 0.00 0.00 39.13 4.20
81 82 1.728069 GCTCTCGGCTACATCGACA 59.272 57.895 0.00 0.00 38.06 4.35
82 83 0.100682 GCTCTCGGCTACATCGACAA 59.899 55.000 0.00 0.00 38.06 3.18
83 84 1.469251 GCTCTCGGCTACATCGACAAA 60.469 52.381 0.00 0.00 38.06 2.83
84 85 2.186076 CTCTCGGCTACATCGACAAAC 58.814 52.381 0.00 0.00 32.86 2.93
85 86 0.914551 CTCGGCTACATCGACAAACG 59.085 55.000 0.00 0.00 44.09 3.60
86 87 0.457166 TCGGCTACATCGACAAACGG 60.457 55.000 0.00 0.00 42.82 4.44
87 88 1.713830 GGCTACATCGACAAACGGC 59.286 57.895 0.00 0.00 42.82 5.68
88 89 1.017177 GGCTACATCGACAAACGGCA 61.017 55.000 0.00 0.00 42.82 5.69
89 90 0.094730 GCTACATCGACAAACGGCAC 59.905 55.000 0.00 0.00 42.82 5.01
90 91 1.424403 CTACATCGACAAACGGCACA 58.576 50.000 0.00 0.00 42.82 4.57
91 92 1.795872 CTACATCGACAAACGGCACAA 59.204 47.619 0.00 0.00 42.82 3.33
92 93 1.018148 ACATCGACAAACGGCACAAA 58.982 45.000 0.00 0.00 42.82 2.83
93 94 1.002900 ACATCGACAAACGGCACAAAG 60.003 47.619 0.00 0.00 42.82 2.77
94 95 0.591170 ATCGACAAACGGCACAAAGG 59.409 50.000 0.00 0.00 42.82 3.11
95 96 1.008995 CGACAAACGGCACAAAGGG 60.009 57.895 0.00 0.00 38.46 3.95
96 97 1.299850 GACAAACGGCACAAAGGGC 60.300 57.895 0.00 0.00 0.00 5.19
97 98 1.734388 GACAAACGGCACAAAGGGCT 61.734 55.000 0.00 0.00 0.00 5.19
98 99 0.466555 ACAAACGGCACAAAGGGCTA 60.467 50.000 0.00 0.00 0.00 3.93
99 100 0.039527 CAAACGGCACAAAGGGCTAC 60.040 55.000 0.00 0.00 0.00 3.58
100 101 1.176619 AAACGGCACAAAGGGCTACC 61.177 55.000 0.00 0.00 0.00 3.18
101 102 3.124921 CGGCACAAAGGGCTACCG 61.125 66.667 0.00 0.00 43.47 4.02
102 103 3.440415 GGCACAAAGGGCTACCGC 61.440 66.667 0.00 0.00 43.47 5.68
112 113 3.490890 GCTACCGCCTTGCTTGAG 58.509 61.111 0.00 0.00 0.00 3.02
113 114 2.754995 GCTACCGCCTTGCTTGAGC 61.755 63.158 0.00 0.00 42.50 4.26
123 124 3.159984 GCTTGAGCAACCTCGTCG 58.840 61.111 0.00 0.00 41.13 5.12
124 125 2.383527 GCTTGAGCAACCTCGTCGG 61.384 63.158 0.00 0.00 41.13 4.79
134 135 1.172175 ACCTCGTCGGTTTCTACTCC 58.828 55.000 0.00 0.00 46.37 3.85
135 136 1.171308 CCTCGTCGGTTTCTACTCCA 58.829 55.000 0.00 0.00 0.00 3.86
136 137 1.132643 CCTCGTCGGTTTCTACTCCAG 59.867 57.143 0.00 0.00 0.00 3.86
137 138 0.524862 TCGTCGGTTTCTACTCCAGC 59.475 55.000 0.00 0.00 0.00 4.85
138 139 0.458025 CGTCGGTTTCTACTCCAGCC 60.458 60.000 0.00 0.00 0.00 4.85
139 140 0.606604 GTCGGTTTCTACTCCAGCCA 59.393 55.000 0.00 0.00 0.00 4.75
140 141 0.606604 TCGGTTTCTACTCCAGCCAC 59.393 55.000 0.00 0.00 0.00 5.01
141 142 0.736325 CGGTTTCTACTCCAGCCACG 60.736 60.000 0.00 0.00 0.00 4.94
142 143 0.606604 GGTTTCTACTCCAGCCACGA 59.393 55.000 0.00 0.00 0.00 4.35
143 144 1.672145 GGTTTCTACTCCAGCCACGAC 60.672 57.143 0.00 0.00 0.00 4.34
144 145 1.272769 GTTTCTACTCCAGCCACGACT 59.727 52.381 0.00 0.00 0.00 4.18
145 146 1.629043 TTCTACTCCAGCCACGACTT 58.371 50.000 0.00 0.00 0.00 3.01
146 147 1.174783 TCTACTCCAGCCACGACTTC 58.825 55.000 0.00 0.00 0.00 3.01
147 148 0.173708 CTACTCCAGCCACGACTTCC 59.826 60.000 0.00 0.00 0.00 3.46
148 149 1.592400 TACTCCAGCCACGACTTCCG 61.592 60.000 0.00 0.00 45.44 4.30
149 150 4.373116 TCCAGCCACGACTTCCGC 62.373 66.667 0.00 0.00 43.32 5.54
151 152 4.717629 CAGCCACGACTTCCGCGA 62.718 66.667 8.23 0.00 43.32 5.87
152 153 3.760035 AGCCACGACTTCCGCGAT 61.760 61.111 8.23 0.00 43.32 4.58
153 154 3.554692 GCCACGACTTCCGCGATG 61.555 66.667 8.23 0.00 43.32 3.84
154 155 3.554692 CCACGACTTCCGCGATGC 61.555 66.667 8.23 0.00 43.32 3.91
167 168 3.282740 GATGCGTCGACCGTTACG 58.717 61.111 10.58 0.00 41.92 3.18
168 169 1.226101 GATGCGTCGACCGTTACGA 60.226 57.895 10.58 0.00 41.55 3.43
174 175 1.575922 TCGACCGTTACGACTGTGG 59.424 57.895 6.24 0.00 34.85 4.17
175 176 1.443194 CGACCGTTACGACTGTGGG 60.443 63.158 6.24 0.00 0.00 4.61
176 177 1.080298 GACCGTTACGACTGTGGGG 60.080 63.158 6.24 0.00 0.00 4.96
177 178 2.263540 CCGTTACGACTGTGGGGG 59.736 66.667 6.24 0.00 0.00 5.40
195 196 4.681978 GTGTCCGTCGGCTTGCCT 62.682 66.667 6.34 0.00 0.00 4.75
196 197 3.936203 TGTCCGTCGGCTTGCCTT 61.936 61.111 6.34 0.00 0.00 4.35
197 198 3.119096 GTCCGTCGGCTTGCCTTC 61.119 66.667 6.34 1.98 0.00 3.46
198 199 4.735132 TCCGTCGGCTTGCCTTCG 62.735 66.667 6.34 12.79 0.00 3.79
200 201 4.735132 CGTCGGCTTGCCTTCGGA 62.735 66.667 10.12 0.00 0.00 4.55
201 202 2.125106 GTCGGCTTGCCTTCGGAT 60.125 61.111 10.12 0.00 0.00 4.18
202 203 1.745489 GTCGGCTTGCCTTCGGATT 60.745 57.895 10.12 0.00 0.00 3.01
203 204 1.449601 TCGGCTTGCCTTCGGATTC 60.450 57.895 10.12 0.00 0.00 2.52
204 205 1.450312 CGGCTTGCCTTCGGATTCT 60.450 57.895 10.12 0.00 0.00 2.40
205 206 1.026718 CGGCTTGCCTTCGGATTCTT 61.027 55.000 10.12 0.00 0.00 2.52
206 207 0.735471 GGCTTGCCTTCGGATTCTTC 59.265 55.000 4.11 0.00 0.00 2.87
207 208 1.680249 GGCTTGCCTTCGGATTCTTCT 60.680 52.381 4.11 0.00 0.00 2.85
208 209 1.668237 GCTTGCCTTCGGATTCTTCTC 59.332 52.381 0.00 0.00 0.00 2.87
209 210 2.284190 CTTGCCTTCGGATTCTTCTCC 58.716 52.381 0.00 0.00 0.00 3.71
210 211 1.275666 TGCCTTCGGATTCTTCTCCA 58.724 50.000 0.00 0.00 34.78 3.86
211 212 1.208052 TGCCTTCGGATTCTTCTCCAG 59.792 52.381 0.00 0.00 34.78 3.86
212 213 1.208293 GCCTTCGGATTCTTCTCCAGT 59.792 52.381 0.00 0.00 34.78 4.00
213 214 2.740256 GCCTTCGGATTCTTCTCCAGTC 60.740 54.545 0.00 0.00 34.78 3.51
214 215 2.763448 CCTTCGGATTCTTCTCCAGTCT 59.237 50.000 0.00 0.00 34.78 3.24
215 216 3.181480 CCTTCGGATTCTTCTCCAGTCTC 60.181 52.174 0.00 0.00 34.78 3.36
216 217 3.087370 TCGGATTCTTCTCCAGTCTCA 57.913 47.619 0.00 0.00 34.78 3.27
217 218 2.755655 TCGGATTCTTCTCCAGTCTCAC 59.244 50.000 0.00 0.00 34.78 3.51
218 219 2.159170 CGGATTCTTCTCCAGTCTCACC 60.159 54.545 0.00 0.00 34.78 4.02
219 220 2.159170 GGATTCTTCTCCAGTCTCACCG 60.159 54.545 0.00 0.00 35.24 4.94
220 221 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
221 222 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
222 223 1.074084 TCTTCTCCAGTCTCACCGTCT 59.926 52.381 0.00 0.00 0.00 4.18
223 224 1.201181 CTTCTCCAGTCTCACCGTCTG 59.799 57.143 0.00 0.00 0.00 3.51
224 225 1.214062 CTCCAGTCTCACCGTCTGC 59.786 63.158 0.00 0.00 0.00 4.26
225 226 2.126307 CCAGTCTCACCGTCTGCG 60.126 66.667 0.00 0.00 37.95 5.18
226 227 2.645567 CAGTCTCACCGTCTGCGT 59.354 61.111 0.00 0.00 36.15 5.24
227 228 1.442857 CAGTCTCACCGTCTGCGTC 60.443 63.158 0.00 0.00 36.15 5.19
228 229 2.502080 GTCTCACCGTCTGCGTCG 60.502 66.667 0.00 0.00 36.15 5.12
229 230 4.400109 TCTCACCGTCTGCGTCGC 62.400 66.667 11.10 11.10 36.15 5.19
230 231 4.406173 CTCACCGTCTGCGTCGCT 62.406 66.667 19.50 0.00 36.15 4.93
231 232 3.035576 CTCACCGTCTGCGTCGCTA 62.036 63.158 19.50 3.59 36.15 4.26
232 233 2.874780 CACCGTCTGCGTCGCTAC 60.875 66.667 19.50 15.00 36.15 3.58
233 234 4.112341 ACCGTCTGCGTCGCTACC 62.112 66.667 19.50 4.72 36.15 3.18
235 236 4.456253 CGTCTGCGTCGCTACCGT 62.456 66.667 19.50 0.00 35.54 4.83
236 237 2.126580 GTCTGCGTCGCTACCGTT 60.127 61.111 19.50 0.00 35.54 4.44
237 238 2.126618 TCTGCGTCGCTACCGTTG 60.127 61.111 19.50 0.42 35.54 4.10
238 239 2.430244 CTGCGTCGCTACCGTTGT 60.430 61.111 19.50 0.00 35.54 3.32
239 240 2.716828 CTGCGTCGCTACCGTTGTG 61.717 63.158 19.50 0.00 35.54 3.33
240 241 2.429571 GCGTCGCTACCGTTGTGA 60.430 61.111 10.68 0.00 35.54 3.58
241 242 2.713894 GCGTCGCTACCGTTGTGAC 61.714 63.158 10.68 14.36 40.38 3.67
242 243 1.081641 CGTCGCTACCGTTGTGACT 60.082 57.895 19.68 0.00 41.26 3.41
243 244 1.334992 CGTCGCTACCGTTGTGACTG 61.335 60.000 19.68 12.04 41.26 3.51
244 245 1.372499 TCGCTACCGTTGTGACTGC 60.372 57.895 0.00 0.00 35.54 4.40
245 246 2.716828 CGCTACCGTTGTGACTGCG 61.717 63.158 0.00 0.00 36.19 5.18
250 251 4.308458 CGTTGTGACTGCGGGGGA 62.308 66.667 0.00 0.00 0.00 4.81
251 252 2.351276 GTTGTGACTGCGGGGGAT 59.649 61.111 0.00 0.00 0.00 3.85
252 253 2.040544 GTTGTGACTGCGGGGGATG 61.041 63.158 0.00 0.00 0.00 3.51
253 254 2.525124 TTGTGACTGCGGGGGATGT 61.525 57.895 0.00 0.00 0.00 3.06
254 255 2.063015 TTGTGACTGCGGGGGATGTT 62.063 55.000 0.00 0.00 0.00 2.71
255 256 2.040544 GTGACTGCGGGGGATGTTG 61.041 63.158 0.00 0.00 0.00 3.33
256 257 2.220586 TGACTGCGGGGGATGTTGA 61.221 57.895 0.00 0.00 0.00 3.18
257 258 1.450312 GACTGCGGGGGATGTTGAG 60.450 63.158 0.00 0.00 0.00 3.02
258 259 2.185310 GACTGCGGGGGATGTTGAGT 62.185 60.000 0.00 0.00 0.00 3.41
259 260 0.907704 ACTGCGGGGGATGTTGAGTA 60.908 55.000 0.00 0.00 0.00 2.59
260 261 0.469917 CTGCGGGGGATGTTGAGTAT 59.530 55.000 0.00 0.00 0.00 2.12
261 262 0.916086 TGCGGGGGATGTTGAGTATT 59.084 50.000 0.00 0.00 0.00 1.89
262 263 2.104111 CTGCGGGGGATGTTGAGTATTA 59.896 50.000 0.00 0.00 0.00 0.98
263 264 2.708861 TGCGGGGGATGTTGAGTATTAT 59.291 45.455 0.00 0.00 0.00 1.28
264 265 3.074412 GCGGGGGATGTTGAGTATTATG 58.926 50.000 0.00 0.00 0.00 1.90
265 266 3.496160 GCGGGGGATGTTGAGTATTATGT 60.496 47.826 0.00 0.00 0.00 2.29
266 267 4.714632 CGGGGGATGTTGAGTATTATGTT 58.285 43.478 0.00 0.00 0.00 2.71
267 268 5.130350 CGGGGGATGTTGAGTATTATGTTT 58.870 41.667 0.00 0.00 0.00 2.83
268 269 6.292923 CGGGGGATGTTGAGTATTATGTTTA 58.707 40.000 0.00 0.00 0.00 2.01
269 270 6.426937 CGGGGGATGTTGAGTATTATGTTTAG 59.573 42.308 0.00 0.00 0.00 1.85
270 271 7.287810 GGGGGATGTTGAGTATTATGTTTAGT 58.712 38.462 0.00 0.00 0.00 2.24
271 272 7.778382 GGGGGATGTTGAGTATTATGTTTAGTT 59.222 37.037 0.00 0.00 0.00 2.24
272 273 9.841295 GGGGATGTTGAGTATTATGTTTAGTTA 57.159 33.333 0.00 0.00 0.00 2.24
311 312 2.622064 GGATATGTTCCGGCTTGTCT 57.378 50.000 0.00 0.00 33.93 3.41
312 313 2.919228 GGATATGTTCCGGCTTGTCTT 58.081 47.619 0.00 0.00 33.93 3.01
313 314 2.614057 GGATATGTTCCGGCTTGTCTTG 59.386 50.000 0.00 0.00 33.93 3.02
314 315 2.851263 TATGTTCCGGCTTGTCTTGT 57.149 45.000 0.00 0.00 0.00 3.16
315 316 2.851263 ATGTTCCGGCTTGTCTTGTA 57.149 45.000 0.00 0.00 0.00 2.41
316 317 1.873698 TGTTCCGGCTTGTCTTGTAC 58.126 50.000 0.00 0.00 0.00 2.90
317 318 1.414919 TGTTCCGGCTTGTCTTGTACT 59.585 47.619 0.00 0.00 0.00 2.73
318 319 2.067013 GTTCCGGCTTGTCTTGTACTC 58.933 52.381 0.00 0.00 0.00 2.59
319 320 0.606604 TCCGGCTTGTCTTGTACTCC 59.393 55.000 0.00 0.00 0.00 3.85
320 321 0.320374 CCGGCTTGTCTTGTACTCCA 59.680 55.000 0.00 0.00 0.00 3.86
321 322 1.270625 CCGGCTTGTCTTGTACTCCAA 60.271 52.381 0.00 0.00 0.00 3.53
322 323 2.489971 CGGCTTGTCTTGTACTCCAAA 58.510 47.619 0.00 0.00 31.20 3.28
323 324 3.074412 CGGCTTGTCTTGTACTCCAAAT 58.926 45.455 0.00 0.00 31.20 2.32
324 325 3.502211 CGGCTTGTCTTGTACTCCAAATT 59.498 43.478 0.00 0.00 31.20 1.82
325 326 4.613622 CGGCTTGTCTTGTACTCCAAATTG 60.614 45.833 0.00 0.00 31.20 2.32
326 327 4.518970 GGCTTGTCTTGTACTCCAAATTGA 59.481 41.667 0.00 0.00 31.20 2.57
327 328 5.452777 GCTTGTCTTGTACTCCAAATTGAC 58.547 41.667 0.00 0.00 31.20 3.18
328 329 5.562890 GCTTGTCTTGTACTCCAAATTGACC 60.563 44.000 0.00 0.00 31.20 4.02
329 330 5.042463 TGTCTTGTACTCCAAATTGACCA 57.958 39.130 0.00 0.00 31.20 4.02
330 331 5.630121 TGTCTTGTACTCCAAATTGACCAT 58.370 37.500 0.00 0.00 31.20 3.55
331 332 5.473162 TGTCTTGTACTCCAAATTGACCATG 59.527 40.000 0.00 0.00 31.20 3.66
332 333 5.473504 GTCTTGTACTCCAAATTGACCATGT 59.526 40.000 0.00 0.00 31.20 3.21
333 334 6.653320 GTCTTGTACTCCAAATTGACCATGTA 59.347 38.462 0.00 0.00 31.20 2.29
334 335 6.653320 TCTTGTACTCCAAATTGACCATGTAC 59.347 38.462 0.00 0.00 31.20 2.90
335 336 6.121776 TGTACTCCAAATTGACCATGTACT 57.878 37.500 0.00 0.00 32.76 2.73
336 337 6.170506 TGTACTCCAAATTGACCATGTACTC 58.829 40.000 0.00 0.00 32.76 2.59
337 338 4.589908 ACTCCAAATTGACCATGTACTCC 58.410 43.478 0.00 0.00 0.00 3.85
338 339 4.289672 ACTCCAAATTGACCATGTACTCCT 59.710 41.667 0.00 0.00 0.00 3.69
339 340 5.487488 ACTCCAAATTGACCATGTACTCCTA 59.513 40.000 0.00 0.00 0.00 2.94
340 341 6.158695 ACTCCAAATTGACCATGTACTCCTAT 59.841 38.462 0.00 0.00 0.00 2.57
341 342 7.347222 ACTCCAAATTGACCATGTACTCCTATA 59.653 37.037 0.00 0.00 0.00 1.31
342 343 8.275187 TCCAAATTGACCATGTACTCCTATAT 57.725 34.615 0.00 0.00 0.00 0.86
343 344 9.387397 TCCAAATTGACCATGTACTCCTATATA 57.613 33.333 0.00 0.00 0.00 0.86
349 350 8.478775 TGACCATGTACTCCTATATATATGCC 57.521 38.462 5.44 0.00 0.00 4.40
350 351 7.509318 TGACCATGTACTCCTATATATATGCCC 59.491 40.741 5.44 0.00 0.00 5.36
351 352 7.370238 ACCATGTACTCCTATATATATGCCCA 58.630 38.462 5.44 0.00 0.00 5.36
352 353 7.290248 ACCATGTACTCCTATATATATGCCCAC 59.710 40.741 5.44 0.00 0.00 4.61
353 354 6.954487 TGTACTCCTATATATATGCCCACG 57.046 41.667 5.44 0.00 0.00 4.94
354 355 6.665695 TGTACTCCTATATATATGCCCACGA 58.334 40.000 5.44 0.00 0.00 4.35
355 356 6.771267 TGTACTCCTATATATATGCCCACGAG 59.229 42.308 5.44 4.01 0.00 4.18
356 357 5.141182 ACTCCTATATATATGCCCACGAGG 58.859 45.833 5.44 2.71 39.47 4.63
365 366 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
366 367 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
367 368 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
368 369 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
369 370 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
370 371 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
371 372 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
372 373 2.076100 CGAGGCTCAAGCAATACAACA 58.924 47.619 15.95 0.00 44.36 3.33
373 374 2.483877 CGAGGCTCAAGCAATACAACAA 59.516 45.455 15.95 0.00 44.36 2.83
374 375 3.667960 CGAGGCTCAAGCAATACAACAAC 60.668 47.826 15.95 0.00 44.36 3.32
375 376 3.490348 AGGCTCAAGCAATACAACAACT 58.510 40.909 4.13 0.00 44.36 3.16
376 377 4.651778 AGGCTCAAGCAATACAACAACTA 58.348 39.130 4.13 0.00 44.36 2.24
377 378 5.256474 AGGCTCAAGCAATACAACAACTAT 58.744 37.500 4.13 0.00 44.36 2.12
378 379 5.711976 AGGCTCAAGCAATACAACAACTATT 59.288 36.000 4.13 0.00 44.36 1.73
379 380 6.030228 GGCTCAAGCAATACAACAACTATTC 58.970 40.000 4.13 0.00 44.36 1.75
380 381 6.030228 GCTCAAGCAATACAACAACTATTCC 58.970 40.000 0.00 0.00 41.59 3.01
381 382 6.349280 GCTCAAGCAATACAACAACTATTCCA 60.349 38.462 0.00 0.00 41.59 3.53
382 383 6.908825 TCAAGCAATACAACAACTATTCCAC 58.091 36.000 0.00 0.00 0.00 4.02
383 384 5.897377 AGCAATACAACAACTATTCCACC 57.103 39.130 0.00 0.00 0.00 4.61
384 385 5.321102 AGCAATACAACAACTATTCCACCA 58.679 37.500 0.00 0.00 0.00 4.17
385 386 5.772672 AGCAATACAACAACTATTCCACCAA 59.227 36.000 0.00 0.00 0.00 3.67
386 387 6.266558 AGCAATACAACAACTATTCCACCAAA 59.733 34.615 0.00 0.00 0.00 3.28
387 388 7.039082 AGCAATACAACAACTATTCCACCAAAT 60.039 33.333 0.00 0.00 0.00 2.32
388 389 7.275560 GCAATACAACAACTATTCCACCAAATC 59.724 37.037 0.00 0.00 0.00 2.17
389 390 5.722021 ACAACAACTATTCCACCAAATCC 57.278 39.130 0.00 0.00 0.00 3.01
390 391 4.526650 ACAACAACTATTCCACCAAATCCC 59.473 41.667 0.00 0.00 0.00 3.85
391 392 4.675063 ACAACTATTCCACCAAATCCCT 57.325 40.909 0.00 0.00 0.00 4.20
392 393 4.600062 ACAACTATTCCACCAAATCCCTC 58.400 43.478 0.00 0.00 0.00 4.30
393 394 4.292306 ACAACTATTCCACCAAATCCCTCT 59.708 41.667 0.00 0.00 0.00 3.69
394 395 4.779993 ACTATTCCACCAAATCCCTCTC 57.220 45.455 0.00 0.00 0.00 3.20
395 396 4.375313 ACTATTCCACCAAATCCCTCTCT 58.625 43.478 0.00 0.00 0.00 3.10
396 397 3.941704 ATTCCACCAAATCCCTCTCTC 57.058 47.619 0.00 0.00 0.00 3.20
397 398 1.584724 TCCACCAAATCCCTCTCTCC 58.415 55.000 0.00 0.00 0.00 3.71
398 399 0.548510 CCACCAAATCCCTCTCTCCC 59.451 60.000 0.00 0.00 0.00 4.30
399 400 1.589414 CACCAAATCCCTCTCTCCCT 58.411 55.000 0.00 0.00 0.00 4.20
400 401 1.918957 CACCAAATCCCTCTCTCCCTT 59.081 52.381 0.00 0.00 0.00 3.95
401 402 2.092699 CACCAAATCCCTCTCTCCCTTC 60.093 54.545 0.00 0.00 0.00 3.46
402 403 2.226013 ACCAAATCCCTCTCTCCCTTCT 60.226 50.000 0.00 0.00 0.00 2.85
403 404 3.014110 ACCAAATCCCTCTCTCCCTTCTA 59.986 47.826 0.00 0.00 0.00 2.10
404 405 4.040755 CCAAATCCCTCTCTCCCTTCTAA 58.959 47.826 0.00 0.00 0.00 2.10
405 406 4.141597 CCAAATCCCTCTCTCCCTTCTAAC 60.142 50.000 0.00 0.00 0.00 2.34
406 407 2.438800 TCCCTCTCTCCCTTCTAACG 57.561 55.000 0.00 0.00 0.00 3.18
407 408 1.063867 TCCCTCTCTCCCTTCTAACGG 60.064 57.143 0.00 0.00 0.00 4.44
408 409 1.063867 CCCTCTCTCCCTTCTAACGGA 60.064 57.143 0.00 0.00 0.00 4.69
409 410 2.025898 CCTCTCTCCCTTCTAACGGAC 58.974 57.143 0.00 0.00 0.00 4.79
410 411 2.620886 CCTCTCTCCCTTCTAACGGACA 60.621 54.545 0.00 0.00 0.00 4.02
411 412 2.424246 CTCTCTCCCTTCTAACGGACAC 59.576 54.545 0.00 0.00 0.00 3.67
412 413 1.477295 CTCTCCCTTCTAACGGACACC 59.523 57.143 0.00 0.00 0.00 4.16
413 414 1.203087 TCTCCCTTCTAACGGACACCA 60.203 52.381 0.00 0.00 0.00 4.17
414 415 0.971386 TCCCTTCTAACGGACACCAC 59.029 55.000 0.00 0.00 0.00 4.16
415 416 0.036671 CCCTTCTAACGGACACCACC 60.037 60.000 0.00 0.00 0.00 4.61
423 424 4.643387 GGACACCACCGGCAAGCT 62.643 66.667 0.00 0.00 0.00 3.74
424 425 3.357079 GACACCACCGGCAAGCTG 61.357 66.667 0.00 0.00 0.00 4.24
444 445 2.525877 GCCCCCGCTACCCTGATA 60.526 66.667 0.00 0.00 0.00 2.15
445 446 2.584391 GCCCCCGCTACCCTGATAG 61.584 68.421 0.00 0.00 0.00 2.08
446 447 2.584391 CCCCCGCTACCCTGATAGC 61.584 68.421 0.00 0.00 43.55 2.97
447 448 2.584391 CCCCGCTACCCTGATAGCC 61.584 68.421 0.00 0.00 44.02 3.93
448 449 1.534235 CCCGCTACCCTGATAGCCT 60.534 63.158 0.00 0.00 44.02 4.58
449 450 1.122019 CCCGCTACCCTGATAGCCTT 61.122 60.000 0.00 0.00 44.02 4.35
450 451 0.759346 CCGCTACCCTGATAGCCTTT 59.241 55.000 0.00 0.00 44.02 3.11
451 452 1.968493 CCGCTACCCTGATAGCCTTTA 59.032 52.381 0.00 0.00 44.02 1.85
452 453 2.028930 CCGCTACCCTGATAGCCTTTAG 60.029 54.545 0.00 0.00 44.02 1.85
453 454 2.628657 CGCTACCCTGATAGCCTTTAGT 59.371 50.000 0.00 0.00 44.02 2.24
454 455 3.553096 CGCTACCCTGATAGCCTTTAGTG 60.553 52.174 0.00 0.00 44.02 2.74
455 456 3.388350 GCTACCCTGATAGCCTTTAGTGT 59.612 47.826 0.00 0.00 41.55 3.55
456 457 4.141688 GCTACCCTGATAGCCTTTAGTGTT 60.142 45.833 0.00 0.00 41.55 3.32
457 458 4.929146 ACCCTGATAGCCTTTAGTGTTT 57.071 40.909 0.00 0.00 0.00 2.83
458 459 5.256806 ACCCTGATAGCCTTTAGTGTTTT 57.743 39.130 0.00 0.00 0.00 2.43
459 460 5.254115 ACCCTGATAGCCTTTAGTGTTTTC 58.746 41.667 0.00 0.00 0.00 2.29
460 461 5.014228 ACCCTGATAGCCTTTAGTGTTTTCT 59.986 40.000 0.00 0.00 0.00 2.52
461 462 5.946377 CCCTGATAGCCTTTAGTGTTTTCTT 59.054 40.000 0.00 0.00 0.00 2.52
462 463 6.094186 CCCTGATAGCCTTTAGTGTTTTCTTC 59.906 42.308 0.00 0.00 0.00 2.87
463 464 6.655003 CCTGATAGCCTTTAGTGTTTTCTTCA 59.345 38.462 0.00 0.00 0.00 3.02
464 465 7.361286 CCTGATAGCCTTTAGTGTTTTCTTCAC 60.361 40.741 0.00 0.00 36.22 3.18
465 466 7.224297 TGATAGCCTTTAGTGTTTTCTTCACT 58.776 34.615 4.11 4.11 46.10 3.41
478 479 5.405935 TTTCTTCACTGTCTATGCTAGCA 57.594 39.130 21.85 21.85 0.00 3.49
499 500 1.373497 GCGCTGCTATGTATCCGCT 60.373 57.895 0.00 0.00 38.52 5.52
502 503 1.867233 CGCTGCTATGTATCCGCTTTT 59.133 47.619 0.00 0.00 0.00 2.27
529 530 5.287992 GCATGTATCTCTTTTGCTTTGCTTC 59.712 40.000 0.00 0.00 0.00 3.86
538 539 2.077198 GCTTTGCTTCGTTGCTCGC 61.077 57.895 4.36 0.00 39.67 5.03
543 544 0.511221 TGCTTCGTTGCTCGCTAAAC 59.489 50.000 4.36 0.00 39.67 2.01
548 549 2.139917 TCGTTGCTCGCTAAACATTGT 58.860 42.857 0.00 0.00 39.67 2.71
562 563 5.821516 AAACATTGTGTCACTTTAACGGA 57.178 34.783 4.27 0.00 0.00 4.69
568 569 3.558006 TGTGTCACTTTAACGGACATGTG 59.442 43.478 1.15 0.00 42.81 3.21
569 570 3.558418 GTGTCACTTTAACGGACATGTGT 59.442 43.478 1.15 0.00 42.81 3.72
570 571 4.746115 GTGTCACTTTAACGGACATGTGTA 59.254 41.667 1.15 0.00 42.81 2.90
572 573 5.464057 TGTCACTTTAACGGACATGTGTAAG 59.536 40.000 1.15 0.24 36.69 2.34
573 574 4.992319 TCACTTTAACGGACATGTGTAAGG 59.008 41.667 1.15 0.00 0.00 2.69
574 575 4.153475 CACTTTAACGGACATGTGTAAGGG 59.847 45.833 1.15 0.00 0.00 3.95
575 576 2.389962 TAACGGACATGTGTAAGGGC 57.610 50.000 1.15 0.00 0.00 5.19
576 577 0.398696 AACGGACATGTGTAAGGGCA 59.601 50.000 1.15 0.00 0.00 5.36
611 619 2.432206 GCAAGCGCCTCCTTTAAAAA 57.568 45.000 2.29 0.00 0.00 1.94
641 649 5.525378 CGCACTAGCTTTCTCATAAGGAAAT 59.475 40.000 0.00 0.00 39.10 2.17
647 655 9.780413 CTAGCTTTCTCATAAGGAAATGAAAAC 57.220 33.333 0.00 0.00 35.51 2.43
653 661 8.256611 TCTCATAAGGAAATGAAAACGAGAAG 57.743 34.615 0.00 0.00 35.51 2.85
654 662 6.842163 TCATAAGGAAATGAAAACGAGAAGC 58.158 36.000 0.00 0.00 32.97 3.86
656 664 4.756084 AGGAAATGAAAACGAGAAGCAG 57.244 40.909 0.00 0.00 0.00 4.24
668 676 0.681733 AGAAGCAGCCGAACAGAAGA 59.318 50.000 0.00 0.00 0.00 2.87
672 680 1.738099 CAGCCGAACAGAAGACCCG 60.738 63.158 0.00 0.00 0.00 5.28
982 990 0.322098 ATTTCACAACCGCGGATCCA 60.322 50.000 35.90 8.44 0.00 3.41
1201 1209 1.220749 GCTGAGGTGCGTGGGATTA 59.779 57.895 0.00 0.00 0.00 1.75
1205 1213 1.134521 TGAGGTGCGTGGGATTATGTC 60.135 52.381 0.00 0.00 0.00 3.06
1210 1218 1.488393 TGCGTGGGATTATGTCATCCA 59.512 47.619 2.23 0.00 44.36 3.41
1231 1239 4.083696 CCAATGCCTGATTTTGCTGTTTTC 60.084 41.667 0.00 0.00 0.00 2.29
1243 1251 4.734398 TGCTGTTTTCTGTGGTGAATTT 57.266 36.364 0.00 0.00 0.00 1.82
1245 1253 4.402155 TGCTGTTTTCTGTGGTGAATTTCT 59.598 37.500 0.00 0.00 0.00 2.52
1252 1260 2.673368 CTGTGGTGAATTTCTAGCGGTC 59.327 50.000 0.00 0.00 0.00 4.79
1260 1268 1.825090 TTTCTAGCGGTCGGTGTCTA 58.175 50.000 5.28 0.00 0.00 2.59
1319 1337 2.965831 TCTAGGGTTTCGGATGAGGATG 59.034 50.000 0.00 0.00 0.00 3.51
1327 1345 5.360591 GTTTCGGATGAGGATGATACTTGT 58.639 41.667 0.00 0.00 0.00 3.16
1356 1374 2.016096 GCTCTCAGATTTGTCTGGGCC 61.016 57.143 0.00 0.00 38.09 5.80
1381 1399 1.791555 CGGTTCTGCTTGCTAATTGCG 60.792 52.381 0.00 0.00 46.63 4.85
1420 1438 1.219646 TTGGAAGTAACCGTTGCGAC 58.780 50.000 0.00 0.00 0.00 5.19
1595 1613 0.539438 TGCCCAACATCCACAACCTC 60.539 55.000 0.00 0.00 0.00 3.85
1616 1634 3.330720 CTCCCCAAGAAGGCCGGT 61.331 66.667 1.90 0.00 35.39 5.28
1759 1780 4.693566 TGTTGCGTTTTACTTCTAGGATGG 59.306 41.667 0.00 0.00 0.00 3.51
1767 1788 7.914346 CGTTTTACTTCTAGGATGGTAGTACTG 59.086 40.741 5.39 0.00 0.00 2.74
1827 1848 1.086696 CTAGCCGTGGACAATGGTTG 58.913 55.000 0.00 0.00 37.27 3.77
1834 1855 1.895131 GTGGACAATGGTTGCATCCTT 59.105 47.619 14.81 5.90 29.68 3.36
1847 1868 5.219633 GTTGCATCCTTTGTAATTCGTTGT 58.780 37.500 0.00 0.00 32.30 3.32
1852 1873 7.388224 TGCATCCTTTGTAATTCGTTGTTAGTA 59.612 33.333 0.00 0.00 0.00 1.82
1857 1878 8.698854 CCTTTGTAATTCGTTGTTAGTACGTTA 58.301 33.333 0.00 0.00 39.84 3.18
1916 1937 4.602340 TTCTACCACTCTGTTCTTGGTC 57.398 45.455 0.00 0.00 42.84 4.02
1929 1950 5.768317 TGTTCTTGGTCGAAAATTTCCATC 58.232 37.500 0.00 0.00 0.00 3.51
1943 1964 2.910688 TCCATCGTCTATTCTTGCCC 57.089 50.000 0.00 0.00 0.00 5.36
1962 1983 4.706476 TGCCCAATTCTTTCATGGTTAGAG 59.294 41.667 0.00 0.00 32.13 2.43
1974 1995 9.967346 CTTTCATGGTTAGAGAACTCGATATAA 57.033 33.333 0.00 0.00 35.74 0.98
2025 2075 3.799420 CGAAGCTGTTAGACTAAGGATGC 59.201 47.826 0.00 0.00 0.00 3.91
2026 2076 4.440802 CGAAGCTGTTAGACTAAGGATGCT 60.441 45.833 0.00 0.98 0.00 3.79
2030 2080 4.791411 GCTGTTAGACTAAGGATGCTCTCG 60.791 50.000 0.00 0.00 0.00 4.04
2041 2091 5.854010 AGGATGCTCTCGTCTTTACAATA 57.146 39.130 0.00 0.00 0.00 1.90
2065 2115 1.514443 GTGTGCTACGGCTCGAGTC 60.514 63.158 15.13 11.34 39.59 3.36
2099 2149 1.833787 TTTGGCGGGGAGTAGTGGAC 61.834 60.000 0.00 0.00 0.00 4.02
2101 2151 1.076485 GGCGGGGAGTAGTGGACTA 60.076 63.158 0.00 0.00 39.06 2.59
2105 2155 1.681793 CGGGGAGTAGTGGACTATGTG 59.318 57.143 0.00 0.00 39.06 3.21
2112 2162 1.195115 AGTGGACTATGTGTGGCGAT 58.805 50.000 0.00 0.00 0.00 4.58
2157 2222 2.731976 GCGGGAAATACTTGCGATCTAG 59.268 50.000 0.00 0.00 0.00 2.43
2158 2223 3.799232 GCGGGAAATACTTGCGATCTAGT 60.799 47.826 0.00 0.00 33.12 2.57
2159 2224 4.558095 GCGGGAAATACTTGCGATCTAGTA 60.558 45.833 0.00 0.00 35.59 1.82
2160 2225 5.526115 CGGGAAATACTTGCGATCTAGTAA 58.474 41.667 0.00 0.00 34.98 2.24
2161 2226 6.157211 CGGGAAATACTTGCGATCTAGTAAT 58.843 40.000 0.00 0.00 34.98 1.89
2205 2273 1.534729 AAAGAAATGGCACGGGAGAC 58.465 50.000 0.00 0.00 0.00 3.36
2223 2291 5.420409 GGAGACGAAACAATTATCACTCCT 58.580 41.667 0.00 0.00 36.61 3.69
2272 2381 1.043116 TGCCCTGACTATCCAGACGG 61.043 60.000 0.00 0.00 36.29 4.79
2273 2382 1.043673 GCCCTGACTATCCAGACGGT 61.044 60.000 0.00 0.00 36.29 4.83
2274 2383 0.747255 CCCTGACTATCCAGACGGTG 59.253 60.000 0.00 0.00 36.29 4.94
2275 2384 0.103208 CCTGACTATCCAGACGGTGC 59.897 60.000 0.00 0.00 36.29 5.01
2276 2385 0.817654 CTGACTATCCAGACGGTGCA 59.182 55.000 0.00 0.00 36.29 4.57
2277 2386 0.817654 TGACTATCCAGACGGTGCAG 59.182 55.000 0.00 0.00 0.00 4.41
2278 2387 1.103803 GACTATCCAGACGGTGCAGA 58.896 55.000 0.00 0.00 0.00 4.26
2279 2388 1.476891 GACTATCCAGACGGTGCAGAA 59.523 52.381 0.00 0.00 0.00 3.02
2280 2389 1.899814 ACTATCCAGACGGTGCAGAAA 59.100 47.619 0.00 0.00 0.00 2.52
2281 2390 2.271800 CTATCCAGACGGTGCAGAAAC 58.728 52.381 0.00 0.00 0.00 2.78
2282 2391 0.670546 ATCCAGACGGTGCAGAAACG 60.671 55.000 0.00 0.00 0.00 3.60
2283 2392 2.317609 CCAGACGGTGCAGAAACGG 61.318 63.158 0.00 0.00 0.00 4.44
2284 2393 1.594293 CAGACGGTGCAGAAACGGT 60.594 57.895 0.00 0.00 36.43 4.83
2285 2394 0.319211 CAGACGGTGCAGAAACGGTA 60.319 55.000 0.00 0.00 34.16 4.02
2286 2395 0.038526 AGACGGTGCAGAAACGGTAG 60.039 55.000 0.00 0.00 34.16 3.18
2287 2396 1.005394 ACGGTGCAGAAACGGTAGG 60.005 57.895 0.00 0.00 32.45 3.18
2288 2397 1.005394 CGGTGCAGAAACGGTAGGT 60.005 57.895 0.00 0.00 0.00 3.08
2289 2398 0.244450 CGGTGCAGAAACGGTAGGTA 59.756 55.000 0.00 0.00 0.00 3.08
2290 2399 1.718396 GGTGCAGAAACGGTAGGTAC 58.282 55.000 0.00 0.00 0.00 3.34
2291 2400 1.001181 GGTGCAGAAACGGTAGGTACA 59.999 52.381 0.00 0.00 0.00 2.90
2292 2401 2.334838 GTGCAGAAACGGTAGGTACAG 58.665 52.381 0.00 0.00 0.00 2.74
2293 2402 2.029649 GTGCAGAAACGGTAGGTACAGA 60.030 50.000 0.00 0.00 0.00 3.41
2294 2403 2.829720 TGCAGAAACGGTAGGTACAGAT 59.170 45.455 0.00 0.00 0.00 2.90
2295 2404 3.119245 TGCAGAAACGGTAGGTACAGATC 60.119 47.826 0.00 0.00 0.00 2.75
2296 2405 3.692576 CAGAAACGGTAGGTACAGATCG 58.307 50.000 0.00 0.00 0.00 3.69
2297 2406 3.376234 CAGAAACGGTAGGTACAGATCGA 59.624 47.826 5.97 0.00 0.00 3.59
2298 2407 3.376546 AGAAACGGTAGGTACAGATCGAC 59.623 47.826 5.97 0.00 0.00 4.20
2299 2408 1.673168 ACGGTAGGTACAGATCGACC 58.327 55.000 5.97 6.42 35.83 4.79
2312 2421 3.720193 CGACCACAGCACAGCAGC 61.720 66.667 0.00 0.00 0.00 5.25
2313 2422 2.592574 GACCACAGCACAGCAGCA 60.593 61.111 0.00 0.00 36.85 4.41
2326 2435 0.898320 AGCAGCACGAATCTGGTACT 59.102 50.000 0.00 0.00 40.11 2.73
2336 2445 3.002451 CGAATCTGGTACTAGGTCTCACG 59.998 52.174 6.38 0.95 0.00 4.35
2370 2479 1.669115 CACACCAAGTCGCCCAGAG 60.669 63.158 0.00 0.00 0.00 3.35
2375 2484 2.365617 CACCAAGTCGCCCAGAGTATAT 59.634 50.000 0.00 0.00 30.94 0.86
2376 2485 3.572682 CACCAAGTCGCCCAGAGTATATA 59.427 47.826 0.00 0.00 30.94 0.86
2377 2486 4.038763 CACCAAGTCGCCCAGAGTATATAA 59.961 45.833 0.00 0.00 30.94 0.98
2432 2541 6.491403 AGTTGAAAGGATGACAATTTACAGCT 59.509 34.615 0.00 0.00 0.00 4.24
2498 2629 5.356470 GGTGCATCTCTTTCTTTCTAATGCT 59.644 40.000 0.00 0.00 38.96 3.79
2499 2630 6.256686 GTGCATCTCTTTCTTTCTAATGCTG 58.743 40.000 0.00 0.00 38.96 4.41
2500 2631 5.163683 TGCATCTCTTTCTTTCTAATGCTGC 60.164 40.000 0.00 0.00 38.96 5.25
2501 2632 5.163683 GCATCTCTTTCTTTCTAATGCTGCA 60.164 40.000 4.13 4.13 36.12 4.41
2502 2633 6.459848 GCATCTCTTTCTTTCTAATGCTGCAT 60.460 38.462 9.81 9.81 36.12 3.96
2503 2634 7.481642 CATCTCTTTCTTTCTAATGCTGCATT 58.518 34.615 28.55 28.55 37.80 3.56
2517 2648 5.596836 TGCTGCATTTATTCCCCTAAAAG 57.403 39.130 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.109919 TCGTGGTCGATGTTGAGTCG 60.110 55.000 0.00 0.00 41.35 4.18
1 2 3.786809 TCGTGGTCGATGTTGAGTC 57.213 52.632 0.00 0.00 41.35 3.36
10 11 1.338655 TGTGAAGAATGTCGTGGTCGA 59.661 47.619 0.00 0.00 44.12 4.20
11 12 1.455786 GTGTGAAGAATGTCGTGGTCG 59.544 52.381 0.00 0.00 38.55 4.79
12 13 1.455786 CGTGTGAAGAATGTCGTGGTC 59.544 52.381 0.00 0.00 0.00 4.02
13 14 1.497991 CGTGTGAAGAATGTCGTGGT 58.502 50.000 0.00 0.00 0.00 4.16
14 15 0.790207 CCGTGTGAAGAATGTCGTGG 59.210 55.000 0.00 0.00 0.00 4.94
15 16 0.163788 GCCGTGTGAAGAATGTCGTG 59.836 55.000 0.00 0.00 0.00 4.35
16 17 0.033504 AGCCGTGTGAAGAATGTCGT 59.966 50.000 0.00 0.00 0.00 4.34
17 18 1.654105 GTAGCCGTGTGAAGAATGTCG 59.346 52.381 0.00 0.00 0.00 4.35
18 19 2.000447 GGTAGCCGTGTGAAGAATGTC 59.000 52.381 0.00 0.00 0.00 3.06
19 20 1.623811 AGGTAGCCGTGTGAAGAATGT 59.376 47.619 0.00 0.00 0.00 2.71
20 21 2.271800 GAGGTAGCCGTGTGAAGAATG 58.728 52.381 0.00 0.00 0.00 2.67
21 22 1.135083 CGAGGTAGCCGTGTGAAGAAT 60.135 52.381 0.00 0.00 0.00 2.40
22 23 0.242825 CGAGGTAGCCGTGTGAAGAA 59.757 55.000 0.00 0.00 0.00 2.52
23 24 0.607217 TCGAGGTAGCCGTGTGAAGA 60.607 55.000 3.38 0.00 0.00 2.87
24 25 0.456312 GTCGAGGTAGCCGTGTGAAG 60.456 60.000 0.00 0.00 0.00 3.02
25 26 1.582968 GTCGAGGTAGCCGTGTGAA 59.417 57.895 0.00 0.00 0.00 3.18
26 27 2.338015 GGTCGAGGTAGCCGTGTGA 61.338 63.158 0.00 0.00 0.00 3.58
27 28 2.181021 GGTCGAGGTAGCCGTGTG 59.819 66.667 0.00 0.00 0.00 3.82
28 29 2.282674 TGGTCGAGGTAGCCGTGT 60.283 61.111 0.00 0.00 0.00 4.49
29 30 2.181021 GTGGTCGAGGTAGCCGTG 59.819 66.667 0.00 0.00 0.00 4.94
30 31 3.437795 CGTGGTCGAGGTAGCCGT 61.438 66.667 0.00 0.00 39.71 5.68
31 32 4.189188 CCGTGGTCGAGGTAGCCG 62.189 72.222 0.00 0.00 39.71 5.52
32 33 1.315257 TAACCGTGGTCGAGGTAGCC 61.315 60.000 0.00 0.00 40.37 3.93
33 34 0.179153 GTAACCGTGGTCGAGGTAGC 60.179 60.000 0.00 0.00 40.37 3.58
34 35 1.135575 GTGTAACCGTGGTCGAGGTAG 60.136 57.143 0.00 0.00 40.37 3.18
35 36 0.881118 GTGTAACCGTGGTCGAGGTA 59.119 55.000 0.00 0.00 40.37 3.08
36 37 1.662044 GTGTAACCGTGGTCGAGGT 59.338 57.895 0.00 0.00 43.68 3.85
37 38 4.565531 GTGTAACCGTGGTCGAGG 57.434 61.111 0.00 0.00 39.71 4.63
48 49 2.537401 GAGAGCGTATGGTGGTGTAAC 58.463 52.381 0.00 0.00 0.00 2.50
49 50 1.133598 CGAGAGCGTATGGTGGTGTAA 59.866 52.381 0.00 0.00 0.00 2.41
50 51 0.736636 CGAGAGCGTATGGTGGTGTA 59.263 55.000 0.00 0.00 0.00 2.90
51 52 1.511305 CGAGAGCGTATGGTGGTGT 59.489 57.895 0.00 0.00 0.00 4.16
52 53 1.226974 CCGAGAGCGTATGGTGGTG 60.227 63.158 0.00 0.00 35.23 4.17
53 54 3.077519 GCCGAGAGCGTATGGTGGT 62.078 63.158 0.00 0.00 35.23 4.16
54 55 2.279517 GCCGAGAGCGTATGGTGG 60.280 66.667 0.00 0.00 35.23 4.61
63 64 0.100682 TTGTCGATGTAGCCGAGAGC 59.899 55.000 0.00 0.00 44.25 4.09
64 65 2.186076 GTTTGTCGATGTAGCCGAGAG 58.814 52.381 0.00 0.00 36.66 3.20
65 66 1.466866 CGTTTGTCGATGTAGCCGAGA 60.467 52.381 0.00 0.00 42.86 4.04
66 67 0.914551 CGTTTGTCGATGTAGCCGAG 59.085 55.000 0.00 0.00 42.86 4.63
67 68 0.457166 CCGTTTGTCGATGTAGCCGA 60.457 55.000 0.00 0.00 42.86 5.54
68 69 1.995991 CCGTTTGTCGATGTAGCCG 59.004 57.895 0.00 0.00 42.86 5.52
69 70 1.017177 TGCCGTTTGTCGATGTAGCC 61.017 55.000 0.00 0.00 42.86 3.93
70 71 0.094730 GTGCCGTTTGTCGATGTAGC 59.905 55.000 0.00 0.00 42.86 3.58
71 72 1.424403 TGTGCCGTTTGTCGATGTAG 58.576 50.000 0.00 0.00 42.86 2.74
72 73 1.867166 TTGTGCCGTTTGTCGATGTA 58.133 45.000 0.00 0.00 42.86 2.29
73 74 1.002900 CTTTGTGCCGTTTGTCGATGT 60.003 47.619 0.00 0.00 42.86 3.06
74 75 1.662876 CCTTTGTGCCGTTTGTCGATG 60.663 52.381 0.00 0.00 42.86 3.84
75 76 0.591170 CCTTTGTGCCGTTTGTCGAT 59.409 50.000 0.00 0.00 42.86 3.59
76 77 1.440938 CCCTTTGTGCCGTTTGTCGA 61.441 55.000 0.00 0.00 42.86 4.20
77 78 1.008995 CCCTTTGTGCCGTTTGTCG 60.009 57.895 0.00 0.00 39.52 4.35
78 79 1.299850 GCCCTTTGTGCCGTTTGTC 60.300 57.895 0.00 0.00 0.00 3.18
79 80 0.466555 TAGCCCTTTGTGCCGTTTGT 60.467 50.000 0.00 0.00 0.00 2.83
80 81 0.039527 GTAGCCCTTTGTGCCGTTTG 60.040 55.000 0.00 0.00 0.00 2.93
81 82 1.176619 GGTAGCCCTTTGTGCCGTTT 61.177 55.000 0.00 0.00 0.00 3.60
82 83 1.602605 GGTAGCCCTTTGTGCCGTT 60.603 57.895 0.00 0.00 0.00 4.44
83 84 2.033602 GGTAGCCCTTTGTGCCGT 59.966 61.111 0.00 0.00 0.00 5.68
84 85 3.124921 CGGTAGCCCTTTGTGCCG 61.125 66.667 0.00 0.00 0.00 5.69
85 86 3.440415 GCGGTAGCCCTTTGTGCC 61.440 66.667 0.00 0.00 37.42 5.01
95 96 2.754995 GCTCAAGCAAGGCGGTAGC 61.755 63.158 0.00 0.00 41.59 3.58
96 97 3.490890 GCTCAAGCAAGGCGGTAG 58.509 61.111 0.00 0.00 41.59 3.18
106 107 2.383527 CCGACGAGGTTGCTCAAGC 61.384 63.158 0.00 3.81 38.96 4.01
107 108 3.862124 CCGACGAGGTTGCTCAAG 58.138 61.111 0.00 0.00 34.51 3.02
117 118 1.467713 GCTGGAGTAGAAACCGACGAG 60.468 57.143 0.00 0.00 0.00 4.18
118 119 0.524862 GCTGGAGTAGAAACCGACGA 59.475 55.000 0.00 0.00 0.00 4.20
119 120 0.458025 GGCTGGAGTAGAAACCGACG 60.458 60.000 0.00 0.00 0.00 5.12
120 121 0.606604 TGGCTGGAGTAGAAACCGAC 59.393 55.000 0.00 0.00 0.00 4.79
121 122 0.606604 GTGGCTGGAGTAGAAACCGA 59.393 55.000 0.00 0.00 0.00 4.69
122 123 0.736325 CGTGGCTGGAGTAGAAACCG 60.736 60.000 0.00 0.00 0.00 4.44
123 124 0.606604 TCGTGGCTGGAGTAGAAACC 59.393 55.000 0.00 0.00 0.00 3.27
124 125 1.272769 AGTCGTGGCTGGAGTAGAAAC 59.727 52.381 0.00 0.00 0.00 2.78
125 126 1.629043 AGTCGTGGCTGGAGTAGAAA 58.371 50.000 0.00 0.00 0.00 2.52
126 127 1.544691 GAAGTCGTGGCTGGAGTAGAA 59.455 52.381 0.00 0.00 0.00 2.10
127 128 1.174783 GAAGTCGTGGCTGGAGTAGA 58.825 55.000 0.00 0.00 0.00 2.59
128 129 0.173708 GGAAGTCGTGGCTGGAGTAG 59.826 60.000 0.00 0.00 0.00 2.57
129 130 1.592400 CGGAAGTCGTGGCTGGAGTA 61.592 60.000 0.00 0.00 0.00 2.59
130 131 2.932234 CGGAAGTCGTGGCTGGAGT 61.932 63.158 0.00 0.00 0.00 3.85
131 132 2.125912 CGGAAGTCGTGGCTGGAG 60.126 66.667 0.00 0.00 0.00 3.86
132 133 4.373116 GCGGAAGTCGTGGCTGGA 62.373 66.667 0.00 0.00 41.72 3.86
156 157 1.575922 CCACAGTCGTAACGGTCGA 59.424 57.895 0.00 0.00 30.93 4.20
157 158 1.443194 CCCACAGTCGTAACGGTCG 60.443 63.158 0.00 0.00 30.93 4.79
158 159 1.080298 CCCCACAGTCGTAACGGTC 60.080 63.158 0.00 0.00 30.93 4.79
159 160 2.576832 CCCCCACAGTCGTAACGGT 61.577 63.158 0.00 0.00 33.83 4.83
160 161 2.263540 CCCCCACAGTCGTAACGG 59.736 66.667 0.00 0.00 0.00 4.44
178 179 4.681978 AGGCAAGCCGACGGACAC 62.682 66.667 20.50 0.00 41.95 3.67
179 180 3.876589 GAAGGCAAGCCGACGGACA 62.877 63.158 20.50 0.00 41.95 4.02
180 181 3.119096 GAAGGCAAGCCGACGGAC 61.119 66.667 20.50 9.27 41.95 4.79
181 182 4.735132 CGAAGGCAAGCCGACGGA 62.735 66.667 20.50 0.00 41.95 4.69
194 195 3.445450 TGAGACTGGAGAAGAATCCGAAG 59.555 47.826 0.00 0.00 42.77 3.79
195 196 3.193691 GTGAGACTGGAGAAGAATCCGAA 59.806 47.826 0.00 0.00 42.77 4.30
196 197 2.755655 GTGAGACTGGAGAAGAATCCGA 59.244 50.000 0.00 0.00 42.77 4.55
197 198 2.159170 GGTGAGACTGGAGAAGAATCCG 60.159 54.545 0.00 0.00 42.77 4.18
198 199 2.159170 CGGTGAGACTGGAGAAGAATCC 60.159 54.545 0.00 0.00 40.03 3.01
199 200 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
200 201 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
201 202 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
202 203 1.074084 AGACGGTGAGACTGGAGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
203 204 1.201181 CAGACGGTGAGACTGGAGAAG 59.799 57.143 0.00 0.00 38.63 2.85
204 205 1.248486 CAGACGGTGAGACTGGAGAA 58.752 55.000 0.00 0.00 38.63 2.87
205 206 1.244697 GCAGACGGTGAGACTGGAGA 61.245 60.000 0.00 0.00 41.73 3.71
206 207 1.214062 GCAGACGGTGAGACTGGAG 59.786 63.158 0.00 0.00 41.73 3.86
207 208 2.626780 CGCAGACGGTGAGACTGGA 61.627 63.158 0.00 0.00 41.73 3.86
208 209 2.126307 CGCAGACGGTGAGACTGG 60.126 66.667 0.00 0.00 41.73 4.00
209 210 1.442857 GACGCAGACGGTGAGACTG 60.443 63.158 0.00 0.00 46.04 3.51
210 211 2.955402 GACGCAGACGGTGAGACT 59.045 61.111 0.00 0.00 46.04 3.24
211 212 2.502080 CGACGCAGACGGTGAGAC 60.502 66.667 0.00 0.00 46.04 3.36
212 213 4.400109 GCGACGCAGACGGTGAGA 62.400 66.667 16.42 0.00 46.96 3.27
219 220 2.126580 AACGGTAGCGACGCAGAC 60.127 61.111 23.70 18.49 34.00 3.51
220 221 2.126618 CAACGGTAGCGACGCAGA 60.127 61.111 23.70 6.47 34.00 4.26
221 222 2.430244 ACAACGGTAGCGACGCAG 60.430 61.111 23.70 12.40 34.00 5.18
222 223 2.731721 CACAACGGTAGCGACGCA 60.732 61.111 23.70 5.17 34.00 5.24
223 224 2.429571 TCACAACGGTAGCGACGC 60.430 61.111 22.88 13.03 34.00 5.19
224 225 1.081641 AGTCACAACGGTAGCGACG 60.082 57.895 22.88 13.36 37.36 5.12
225 226 1.615107 GCAGTCACAACGGTAGCGAC 61.615 60.000 22.88 8.20 0.00 5.19
226 227 1.372499 GCAGTCACAACGGTAGCGA 60.372 57.895 22.88 0.00 0.00 4.93
227 228 2.716828 CGCAGTCACAACGGTAGCG 61.717 63.158 13.69 13.69 37.68 4.26
228 229 2.380410 CCGCAGTCACAACGGTAGC 61.380 63.158 0.43 0.00 42.01 3.58
229 230 1.736645 CCCGCAGTCACAACGGTAG 60.737 63.158 7.64 0.00 45.49 3.18
230 231 2.340809 CCCGCAGTCACAACGGTA 59.659 61.111 7.64 0.00 45.49 4.02
231 232 4.619227 CCCCGCAGTCACAACGGT 62.619 66.667 7.64 0.00 45.49 4.83
233 234 3.605749 ATCCCCCGCAGTCACAACG 62.606 63.158 0.00 0.00 0.00 4.10
234 235 2.040544 CATCCCCCGCAGTCACAAC 61.041 63.158 0.00 0.00 0.00 3.32
235 236 2.063015 AACATCCCCCGCAGTCACAA 62.063 55.000 0.00 0.00 0.00 3.33
236 237 2.525124 AACATCCCCCGCAGTCACA 61.525 57.895 0.00 0.00 0.00 3.58
237 238 2.040544 CAACATCCCCCGCAGTCAC 61.041 63.158 0.00 0.00 0.00 3.67
238 239 2.184020 CTCAACATCCCCCGCAGTCA 62.184 60.000 0.00 0.00 0.00 3.41
239 240 1.450312 CTCAACATCCCCCGCAGTC 60.450 63.158 0.00 0.00 0.00 3.51
240 241 0.907704 TACTCAACATCCCCCGCAGT 60.908 55.000 0.00 0.00 0.00 4.40
241 242 0.469917 ATACTCAACATCCCCCGCAG 59.530 55.000 0.00 0.00 0.00 5.18
242 243 0.916086 AATACTCAACATCCCCCGCA 59.084 50.000 0.00 0.00 0.00 5.69
243 244 2.922740 TAATACTCAACATCCCCCGC 57.077 50.000 0.00 0.00 0.00 6.13
244 245 4.351874 ACATAATACTCAACATCCCCCG 57.648 45.455 0.00 0.00 0.00 5.73
245 246 7.287810 ACTAAACATAATACTCAACATCCCCC 58.712 38.462 0.00 0.00 0.00 5.40
246 247 8.747538 AACTAAACATAATACTCAACATCCCC 57.252 34.615 0.00 0.00 0.00 4.81
277 278 9.058174 CGGAACATATCCTAATCTATCTCGTAT 57.942 37.037 0.00 0.00 46.98 3.06
278 279 7.498239 CCGGAACATATCCTAATCTATCTCGTA 59.502 40.741 0.00 0.00 46.98 3.43
279 280 6.319152 CCGGAACATATCCTAATCTATCTCGT 59.681 42.308 0.00 0.00 46.98 4.18
280 281 6.730175 CCGGAACATATCCTAATCTATCTCG 58.270 44.000 0.00 0.00 46.98 4.04
281 282 6.322712 AGCCGGAACATATCCTAATCTATCTC 59.677 42.308 5.05 0.00 46.98 2.75
282 283 6.198639 AGCCGGAACATATCCTAATCTATCT 58.801 40.000 5.05 0.00 46.98 1.98
283 284 6.472686 AGCCGGAACATATCCTAATCTATC 57.527 41.667 5.05 0.00 46.98 2.08
284 285 6.213600 ACAAGCCGGAACATATCCTAATCTAT 59.786 38.462 5.05 0.00 46.98 1.98
285 286 5.542635 ACAAGCCGGAACATATCCTAATCTA 59.457 40.000 5.05 0.00 46.98 1.98
286 287 4.348168 ACAAGCCGGAACATATCCTAATCT 59.652 41.667 5.05 0.00 46.98 2.40
287 288 4.642429 ACAAGCCGGAACATATCCTAATC 58.358 43.478 5.05 0.00 46.98 1.75
288 289 4.348168 AGACAAGCCGGAACATATCCTAAT 59.652 41.667 5.05 0.00 46.98 1.73
289 290 3.709653 AGACAAGCCGGAACATATCCTAA 59.290 43.478 5.05 0.00 46.98 2.69
290 291 3.305720 AGACAAGCCGGAACATATCCTA 58.694 45.455 5.05 0.00 46.98 2.94
291 292 2.119495 AGACAAGCCGGAACATATCCT 58.881 47.619 5.05 0.00 46.98 3.24
292 293 2.614057 CAAGACAAGCCGGAACATATCC 59.386 50.000 5.05 0.00 45.57 2.59
293 294 3.270877 ACAAGACAAGCCGGAACATATC 58.729 45.455 5.05 0.00 0.00 1.63
294 295 3.350219 ACAAGACAAGCCGGAACATAT 57.650 42.857 5.05 0.00 0.00 1.78
295 296 2.851263 ACAAGACAAGCCGGAACATA 57.149 45.000 5.05 0.00 0.00 2.29
296 297 2.038557 AGTACAAGACAAGCCGGAACAT 59.961 45.455 5.05 0.00 0.00 2.71
297 298 1.414919 AGTACAAGACAAGCCGGAACA 59.585 47.619 5.05 0.00 0.00 3.18
298 299 2.067013 GAGTACAAGACAAGCCGGAAC 58.933 52.381 5.05 0.00 0.00 3.62
299 300 1.001633 GGAGTACAAGACAAGCCGGAA 59.998 52.381 5.05 0.00 0.00 4.30
300 301 0.606604 GGAGTACAAGACAAGCCGGA 59.393 55.000 5.05 0.00 0.00 5.14
301 302 0.320374 TGGAGTACAAGACAAGCCGG 59.680 55.000 0.00 0.00 0.00 6.13
302 303 2.163818 TTGGAGTACAAGACAAGCCG 57.836 50.000 0.00 0.00 33.18 5.52
303 304 4.518970 TCAATTTGGAGTACAAGACAAGCC 59.481 41.667 0.00 0.00 40.82 4.35
304 305 5.452777 GTCAATTTGGAGTACAAGACAAGC 58.547 41.667 0.00 0.00 40.82 4.01
305 306 5.530915 TGGTCAATTTGGAGTACAAGACAAG 59.469 40.000 7.93 0.00 40.82 3.16
306 307 5.441500 TGGTCAATTTGGAGTACAAGACAA 58.558 37.500 7.93 0.00 40.82 3.18
307 308 5.042463 TGGTCAATTTGGAGTACAAGACA 57.958 39.130 7.93 0.00 40.82 3.41
308 309 5.473504 ACATGGTCAATTTGGAGTACAAGAC 59.526 40.000 0.00 0.00 40.82 3.01
309 310 5.630121 ACATGGTCAATTTGGAGTACAAGA 58.370 37.500 0.00 0.00 40.82 3.02
310 311 5.964958 ACATGGTCAATTTGGAGTACAAG 57.035 39.130 0.00 0.00 40.82 3.16
311 312 6.539173 AGTACATGGTCAATTTGGAGTACAA 58.461 36.000 0.00 0.00 37.28 2.41
312 313 6.121776 AGTACATGGTCAATTTGGAGTACA 57.878 37.500 0.00 0.00 34.58 2.90
313 314 5.585047 GGAGTACATGGTCAATTTGGAGTAC 59.415 44.000 0.00 0.00 0.00 2.73
314 315 5.487488 AGGAGTACATGGTCAATTTGGAGTA 59.513 40.000 0.00 0.00 0.00 2.59
315 316 4.289672 AGGAGTACATGGTCAATTTGGAGT 59.710 41.667 0.00 0.00 0.00 3.85
316 317 4.848357 AGGAGTACATGGTCAATTTGGAG 58.152 43.478 0.00 0.00 0.00 3.86
317 318 4.927267 AGGAGTACATGGTCAATTTGGA 57.073 40.909 0.00 0.00 0.00 3.53
323 324 8.924303 GGCATATATATAGGAGTACATGGTCAA 58.076 37.037 8.56 0.00 0.00 3.18
324 325 7.509318 GGGCATATATATAGGAGTACATGGTCA 59.491 40.741 8.56 0.00 0.00 4.02
325 326 7.509318 TGGGCATATATATAGGAGTACATGGTC 59.491 40.741 8.56 0.00 0.00 4.02
326 327 7.290248 GTGGGCATATATATAGGAGTACATGGT 59.710 40.741 8.56 0.00 0.00 3.55
327 328 7.523873 CGTGGGCATATATATAGGAGTACATGG 60.524 44.444 8.56 0.00 0.00 3.66
328 329 7.230712 TCGTGGGCATATATATAGGAGTACATG 59.769 40.741 8.56 6.35 0.00 3.21
329 330 7.295340 TCGTGGGCATATATATAGGAGTACAT 58.705 38.462 8.56 0.00 0.00 2.29
330 331 6.665695 TCGTGGGCATATATATAGGAGTACA 58.334 40.000 8.56 0.00 0.00 2.90
331 332 6.207025 CCTCGTGGGCATATATATAGGAGTAC 59.793 46.154 8.56 2.84 0.00 2.73
332 333 6.304624 CCTCGTGGGCATATATATAGGAGTA 58.695 44.000 8.56 0.00 0.00 2.59
333 334 5.141182 CCTCGTGGGCATATATATAGGAGT 58.859 45.833 8.56 0.00 0.00 3.85
334 335 5.713792 CCTCGTGGGCATATATATAGGAG 57.286 47.826 8.56 1.89 0.00 3.69
348 349 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
349 350 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
350 351 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
351 352 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
352 353 2.076100 TGTTGTATTGCTTGAGCCTCG 58.924 47.619 0.00 0.00 41.18 4.63
353 354 3.503748 AGTTGTTGTATTGCTTGAGCCTC 59.496 43.478 0.00 0.00 41.18 4.70
354 355 3.490348 AGTTGTTGTATTGCTTGAGCCT 58.510 40.909 0.00 0.00 41.18 4.58
355 356 3.923017 AGTTGTTGTATTGCTTGAGCC 57.077 42.857 0.00 0.00 41.18 4.70
356 357 6.030228 GGAATAGTTGTTGTATTGCTTGAGC 58.970 40.000 0.00 0.00 42.50 4.26
357 358 7.023575 GTGGAATAGTTGTTGTATTGCTTGAG 58.976 38.462 0.00 0.00 31.43 3.02
358 359 6.072175 GGTGGAATAGTTGTTGTATTGCTTGA 60.072 38.462 0.00 0.00 31.43 3.02
359 360 6.092748 GGTGGAATAGTTGTTGTATTGCTTG 58.907 40.000 0.00 0.00 31.43 4.01
360 361 5.772672 TGGTGGAATAGTTGTTGTATTGCTT 59.227 36.000 0.00 0.00 31.43 3.91
361 362 5.321102 TGGTGGAATAGTTGTTGTATTGCT 58.679 37.500 0.00 0.00 31.43 3.91
362 363 5.637006 TGGTGGAATAGTTGTTGTATTGC 57.363 39.130 0.00 0.00 0.00 3.56
363 364 7.759433 GGATTTGGTGGAATAGTTGTTGTATTG 59.241 37.037 0.00 0.00 0.00 1.90
364 365 7.093509 GGGATTTGGTGGAATAGTTGTTGTATT 60.094 37.037 0.00 0.00 0.00 1.89
365 366 6.379988 GGGATTTGGTGGAATAGTTGTTGTAT 59.620 38.462 0.00 0.00 0.00 2.29
366 367 5.712917 GGGATTTGGTGGAATAGTTGTTGTA 59.287 40.000 0.00 0.00 0.00 2.41
367 368 4.526650 GGGATTTGGTGGAATAGTTGTTGT 59.473 41.667 0.00 0.00 0.00 3.32
368 369 4.772100 AGGGATTTGGTGGAATAGTTGTTG 59.228 41.667 0.00 0.00 0.00 3.33
369 370 5.010708 AGGGATTTGGTGGAATAGTTGTT 57.989 39.130 0.00 0.00 0.00 2.83
370 371 4.292306 AGAGGGATTTGGTGGAATAGTTGT 59.708 41.667 0.00 0.00 0.00 3.32
371 372 4.860022 AGAGGGATTTGGTGGAATAGTTG 58.140 43.478 0.00 0.00 0.00 3.16
372 373 4.790790 AGAGAGGGATTTGGTGGAATAGTT 59.209 41.667 0.00 0.00 0.00 2.24
373 374 4.375313 AGAGAGGGATTTGGTGGAATAGT 58.625 43.478 0.00 0.00 0.00 2.12
374 375 4.202409 GGAGAGAGGGATTTGGTGGAATAG 60.202 50.000 0.00 0.00 0.00 1.73
375 376 3.716872 GGAGAGAGGGATTTGGTGGAATA 59.283 47.826 0.00 0.00 0.00 1.75
376 377 2.511637 GGAGAGAGGGATTTGGTGGAAT 59.488 50.000 0.00 0.00 0.00 3.01
377 378 1.916181 GGAGAGAGGGATTTGGTGGAA 59.084 52.381 0.00 0.00 0.00 3.53
378 379 1.584724 GGAGAGAGGGATTTGGTGGA 58.415 55.000 0.00 0.00 0.00 4.02
379 380 0.548510 GGGAGAGAGGGATTTGGTGG 59.451 60.000 0.00 0.00 0.00 4.61
380 381 1.589414 AGGGAGAGAGGGATTTGGTG 58.411 55.000 0.00 0.00 0.00 4.17
381 382 2.200955 GAAGGGAGAGAGGGATTTGGT 58.799 52.381 0.00 0.00 0.00 3.67
382 383 2.486716 AGAAGGGAGAGAGGGATTTGG 58.513 52.381 0.00 0.00 0.00 3.28
383 384 4.442192 CGTTAGAAGGGAGAGAGGGATTTG 60.442 50.000 0.00 0.00 0.00 2.32
384 385 3.707102 CGTTAGAAGGGAGAGAGGGATTT 59.293 47.826 0.00 0.00 0.00 2.17
385 386 3.301274 CGTTAGAAGGGAGAGAGGGATT 58.699 50.000 0.00 0.00 0.00 3.01
386 387 2.425102 CCGTTAGAAGGGAGAGAGGGAT 60.425 54.545 0.00 0.00 36.04 3.85
387 388 1.063867 CCGTTAGAAGGGAGAGAGGGA 60.064 57.143 0.00 0.00 36.04 4.20
388 389 1.063867 TCCGTTAGAAGGGAGAGAGGG 60.064 57.143 0.00 0.00 37.99 4.30
389 390 2.025898 GTCCGTTAGAAGGGAGAGAGG 58.974 57.143 3.96 0.00 43.02 3.69
390 391 2.424246 GTGTCCGTTAGAAGGGAGAGAG 59.576 54.545 3.96 0.00 43.02 3.20
391 392 2.444421 GTGTCCGTTAGAAGGGAGAGA 58.556 52.381 3.96 0.00 43.02 3.10
392 393 1.477295 GGTGTCCGTTAGAAGGGAGAG 59.523 57.143 3.96 0.00 43.02 3.20
393 394 1.203087 TGGTGTCCGTTAGAAGGGAGA 60.203 52.381 3.96 0.50 43.02 3.71
394 395 1.067071 GTGGTGTCCGTTAGAAGGGAG 60.067 57.143 3.96 0.00 43.02 4.30
395 396 0.971386 GTGGTGTCCGTTAGAAGGGA 59.029 55.000 0.00 0.00 40.40 4.20
396 397 0.036671 GGTGGTGTCCGTTAGAAGGG 60.037 60.000 0.00 0.00 35.32 3.95
397 398 0.389426 CGGTGGTGTCCGTTAGAAGG 60.389 60.000 0.00 0.00 44.77 3.46
398 399 3.117589 CGGTGGTGTCCGTTAGAAG 57.882 57.895 0.00 0.00 44.77 2.85
406 407 4.643387 AGCTTGCCGGTGGTGTCC 62.643 66.667 1.90 0.00 0.00 4.02
407 408 3.357079 CAGCTTGCCGGTGGTGTC 61.357 66.667 1.90 0.00 37.47 3.67
427 428 2.525877 TATCAGGGTAGCGGGGGC 60.526 66.667 0.00 0.00 0.00 5.80
428 429 2.584391 GCTATCAGGGTAGCGGGGG 61.584 68.421 0.00 0.00 37.88 5.40
429 430 2.584391 GGCTATCAGGGTAGCGGGG 61.584 68.421 5.54 0.00 46.29 5.73
430 431 1.122019 AAGGCTATCAGGGTAGCGGG 61.122 60.000 5.54 0.00 46.29 6.13
431 432 0.759346 AAAGGCTATCAGGGTAGCGG 59.241 55.000 5.54 0.00 46.29 5.52
432 433 2.628657 ACTAAAGGCTATCAGGGTAGCG 59.371 50.000 5.54 0.00 46.29 4.26
433 434 3.388350 ACACTAAAGGCTATCAGGGTAGC 59.612 47.826 2.92 2.92 44.96 3.58
434 435 5.615925 AACACTAAAGGCTATCAGGGTAG 57.384 43.478 0.00 0.00 0.00 3.18
435 436 6.214819 AGAAAACACTAAAGGCTATCAGGGTA 59.785 38.462 0.00 0.00 0.00 3.69
436 437 4.929146 AAACACTAAAGGCTATCAGGGT 57.071 40.909 0.00 0.00 0.00 4.34
437 438 5.501156 AGAAAACACTAAAGGCTATCAGGG 58.499 41.667 0.00 0.00 0.00 4.45
438 439 6.655003 TGAAGAAAACACTAAAGGCTATCAGG 59.345 38.462 0.00 0.00 0.00 3.86
439 440 7.389053 AGTGAAGAAAACACTAAAGGCTATCAG 59.611 37.037 0.00 0.00 45.10 2.90
440 441 7.173218 CAGTGAAGAAAACACTAAAGGCTATCA 59.827 37.037 0.00 0.00 45.15 2.15
441 442 7.173390 ACAGTGAAGAAAACACTAAAGGCTATC 59.827 37.037 0.00 0.00 45.15 2.08
442 443 6.998673 ACAGTGAAGAAAACACTAAAGGCTAT 59.001 34.615 0.00 0.00 45.15 2.97
443 444 6.354130 ACAGTGAAGAAAACACTAAAGGCTA 58.646 36.000 0.00 0.00 45.15 3.93
444 445 5.193679 ACAGTGAAGAAAACACTAAAGGCT 58.806 37.500 0.00 0.00 45.15 4.58
445 446 5.297029 AGACAGTGAAGAAAACACTAAAGGC 59.703 40.000 0.00 0.00 45.15 4.35
446 447 6.927294 AGACAGTGAAGAAAACACTAAAGG 57.073 37.500 0.00 0.00 45.15 3.11
447 448 8.012241 GCATAGACAGTGAAGAAAACACTAAAG 58.988 37.037 0.00 0.00 45.15 1.85
448 449 7.715249 AGCATAGACAGTGAAGAAAACACTAAA 59.285 33.333 0.00 0.00 45.15 1.85
449 450 7.217200 AGCATAGACAGTGAAGAAAACACTAA 58.783 34.615 0.00 0.00 45.15 2.24
450 451 6.759272 AGCATAGACAGTGAAGAAAACACTA 58.241 36.000 0.00 0.00 45.15 2.74
451 452 6.870965 CTAGCATAGACAGTGAAGAAAACACT 59.129 38.462 0.00 0.00 44.30 3.55
452 453 5.931441 AGCATAGACAGTGAAGAAAACAC 57.069 39.130 0.00 0.00 38.38 3.32
453 454 5.639506 GCTAGCATAGACAGTGAAGAAAACA 59.360 40.000 10.63 0.00 42.77 2.83
454 455 5.639506 TGCTAGCATAGACAGTGAAGAAAAC 59.360 40.000 14.93 0.00 42.77 2.43
455 456 5.793817 TGCTAGCATAGACAGTGAAGAAAA 58.206 37.500 14.93 0.00 42.77 2.29
456 457 5.405935 TGCTAGCATAGACAGTGAAGAAA 57.594 39.130 14.93 0.00 42.77 2.52
457 458 5.604758 ATGCTAGCATAGACAGTGAAGAA 57.395 39.130 28.62 0.00 42.77 2.52
458 459 5.354767 CAATGCTAGCATAGACAGTGAAGA 58.645 41.667 29.77 0.00 42.77 2.87
459 460 4.025061 GCAATGCTAGCATAGACAGTGAAG 60.025 45.833 29.77 10.78 42.77 3.02
460 461 3.873361 GCAATGCTAGCATAGACAGTGAA 59.127 43.478 29.77 0.00 42.77 3.18
461 462 3.461061 GCAATGCTAGCATAGACAGTGA 58.539 45.455 29.77 0.00 42.77 3.41
462 463 2.220363 CGCAATGCTAGCATAGACAGTG 59.780 50.000 29.77 22.51 42.77 3.66
463 464 2.477825 CGCAATGCTAGCATAGACAGT 58.522 47.619 29.77 11.06 42.77 3.55
464 465 1.194098 GCGCAATGCTAGCATAGACAG 59.806 52.381 29.77 19.08 42.77 3.51
465 466 1.220529 GCGCAATGCTAGCATAGACA 58.779 50.000 29.77 0.94 42.77 3.41
478 479 1.432514 CGGATACATAGCAGCGCAAT 58.567 50.000 11.47 0.00 0.00 3.56
485 486 2.571212 CCCAAAAGCGGATACATAGCA 58.429 47.619 0.00 0.00 0.00 3.49
499 500 4.527816 AGCAAAAGAGATACATGCCCAAAA 59.472 37.500 0.00 0.00 37.73 2.44
502 503 3.370840 AGCAAAAGAGATACATGCCCA 57.629 42.857 0.00 0.00 37.73 5.36
529 530 2.233355 CACAATGTTTAGCGAGCAACG 58.767 47.619 0.00 0.00 45.66 4.10
538 539 6.849305 GTCCGTTAAAGTGACACAATGTTTAG 59.151 38.462 8.59 0.00 0.00 1.85
543 544 4.804608 TGTCCGTTAAAGTGACACAATG 57.195 40.909 8.59 0.00 34.28 2.82
548 549 3.799366 ACACATGTCCGTTAAAGTGACA 58.201 40.909 12.40 12.40 42.65 3.58
562 563 6.377146 CCTTAAACTAATGCCCTTACACATGT 59.623 38.462 0.00 0.00 0.00 3.21
568 569 3.314357 CGGCCTTAAACTAATGCCCTTAC 59.686 47.826 0.00 0.00 43.78 2.34
569 570 3.547746 CGGCCTTAAACTAATGCCCTTA 58.452 45.455 0.00 0.00 43.78 2.69
570 571 2.375146 CGGCCTTAAACTAATGCCCTT 58.625 47.619 0.00 0.00 43.78 3.95
572 573 1.029681 CCGGCCTTAAACTAATGCCC 58.970 55.000 0.00 0.00 43.78 5.36
573 574 1.029681 CCCGGCCTTAAACTAATGCC 58.970 55.000 0.00 3.41 43.40 4.40
574 575 0.384309 GCCCGGCCTTAAACTAATGC 59.616 55.000 0.00 0.00 0.00 3.56
575 576 1.757682 TGCCCGGCCTTAAACTAATG 58.242 50.000 7.03 0.00 0.00 1.90
576 577 2.375146 CTTGCCCGGCCTTAAACTAAT 58.625 47.619 7.03 0.00 0.00 1.73
611 619 3.202906 TGAGAAAGCTAGTGCGTGTTTT 58.797 40.909 0.00 0.00 45.42 2.43
619 627 8.498054 TTCATTTCCTTATGAGAAAGCTAGTG 57.502 34.615 0.00 0.00 36.71 2.74
621 629 9.780413 GTTTTCATTTCCTTATGAGAAAGCTAG 57.220 33.333 0.00 0.00 36.71 3.42
622 630 8.450964 CGTTTTCATTTCCTTATGAGAAAGCTA 58.549 33.333 0.00 0.00 36.71 3.32
623 631 7.174946 TCGTTTTCATTTCCTTATGAGAAAGCT 59.825 33.333 0.00 0.00 36.71 3.74
624 632 7.305474 TCGTTTTCATTTCCTTATGAGAAAGC 58.695 34.615 0.00 0.00 36.71 3.51
625 633 8.721478 TCTCGTTTTCATTTCCTTATGAGAAAG 58.279 33.333 0.00 0.00 36.71 2.62
626 634 8.615878 TCTCGTTTTCATTTCCTTATGAGAAA 57.384 30.769 0.00 0.00 36.03 2.52
627 635 8.615878 TTCTCGTTTTCATTTCCTTATGAGAA 57.384 30.769 0.00 0.00 36.03 2.87
628 636 7.148407 GCTTCTCGTTTTCATTTCCTTATGAGA 60.148 37.037 0.00 0.00 36.03 3.27
629 637 6.963805 GCTTCTCGTTTTCATTTCCTTATGAG 59.036 38.462 0.00 0.00 36.03 2.90
630 638 6.429692 TGCTTCTCGTTTTCATTTCCTTATGA 59.570 34.615 0.00 0.00 32.87 2.15
641 649 0.249699 TCGGCTGCTTCTCGTTTTCA 60.250 50.000 0.00 0.00 0.00 2.69
647 655 0.667487 TTCTGTTCGGCTGCTTCTCG 60.667 55.000 0.00 0.00 0.00 4.04
653 661 2.035442 GGGTCTTCTGTTCGGCTGC 61.035 63.158 0.00 0.00 0.00 5.25
654 662 1.738099 CGGGTCTTCTGTTCGGCTG 60.738 63.158 0.00 0.00 0.00 4.85
656 664 1.005394 TTCGGGTCTTCTGTTCGGC 60.005 57.895 0.00 0.00 0.00 5.54
901 909 0.557238 TGGGTATACGGCTGGTAGGA 59.443 55.000 0.00 0.00 33.84 2.94
982 990 3.280295 CCATGTCTACAGTACTCGGAGT 58.720 50.000 15.95 15.95 0.00 3.85
1201 1209 4.682320 GCAAAATCAGGCATTGGATGACAT 60.682 41.667 0.00 0.00 42.15 3.06
1205 1213 3.194861 CAGCAAAATCAGGCATTGGATG 58.805 45.455 0.00 0.00 0.00 3.51
1210 1218 4.753107 CAGAAAACAGCAAAATCAGGCATT 59.247 37.500 0.00 0.00 0.00 3.56
1231 1239 2.673368 GACCGCTAGAAATTCACCACAG 59.327 50.000 0.00 0.00 0.00 3.66
1243 1251 0.251354 ACTAGACACCGACCGCTAGA 59.749 55.000 0.00 0.00 35.48 2.43
1245 1253 1.086067 CGACTAGACACCGACCGCTA 61.086 60.000 0.00 0.00 0.00 4.26
1252 1260 2.037136 ACCGACCGACTAGACACCG 61.037 63.158 0.00 0.00 0.00 4.94
1260 1268 2.373434 GAACCAACCACCGACCGACT 62.373 60.000 0.00 0.00 0.00 4.18
1319 1337 2.430332 AGAGCAGGCAGAGACAAGTATC 59.570 50.000 0.00 0.00 0.00 2.24
1327 1345 1.863325 AATCTGAGAGCAGGCAGAGA 58.137 50.000 8.13 0.00 43.65 3.10
1356 1374 0.175760 TAGCAAGCAGAACCGCCTAG 59.824 55.000 0.00 0.00 0.00 3.02
1381 1399 4.209080 CCAAAATTCCACAAAGTTTCGAGC 59.791 41.667 0.00 0.00 33.11 5.03
1420 1438 1.338020 GAACCTGCACAAACAAGGGAG 59.662 52.381 0.00 0.00 0.00 4.30
1595 1613 2.044551 GCCTTCTTGGGGAGCAGG 60.045 66.667 0.00 0.00 41.26 4.85
1767 1788 6.314896 AGCACACAGATTCAGAAACTAATAGC 59.685 38.462 0.00 0.00 0.00 2.97
1812 1833 0.171007 GATGCAACCATTGTCCACGG 59.829 55.000 0.00 0.00 0.00 4.94
1813 1834 0.171007 GGATGCAACCATTGTCCACG 59.829 55.000 8.36 0.00 0.00 4.94
1827 1848 6.608610 ACTAACAACGAATTACAAAGGATGC 58.391 36.000 0.00 0.00 0.00 3.91
1847 1868 9.874205 AGGTGCAACTTTTATATAACGTACTAA 57.126 29.630 0.00 0.00 36.74 2.24
1852 1873 7.988599 TCCATAGGTGCAACTTTTATATAACGT 59.011 33.333 10.94 0.00 36.74 3.99
1857 1878 7.506938 AGCAATCCATAGGTGCAACTTTTATAT 59.493 33.333 10.94 0.00 40.83 0.86
1916 1937 6.412072 GCAAGAATAGACGATGGAAATTTTCG 59.588 38.462 8.77 8.77 38.76 3.46
1929 1950 5.123820 TGAAAGAATTGGGCAAGAATAGACG 59.876 40.000 0.00 0.00 0.00 4.18
1943 1964 7.331934 TCGAGTTCTCTAACCATGAAAGAATTG 59.668 37.037 0.00 0.00 36.15 2.32
1962 1983 5.921408 AGGATTTCGCAGTTATATCGAGTTC 59.079 40.000 0.00 0.00 33.56 3.01
2013 2034 3.290948 AGACGAGAGCATCCTTAGTCT 57.709 47.619 0.00 0.00 33.66 3.24
2019 2066 4.744795 ATTGTAAAGACGAGAGCATCCT 57.255 40.909 0.00 0.00 33.66 3.24
2030 2080 5.166398 AGCACACCTACGTATTGTAAAGAC 58.834 41.667 9.08 0.22 34.01 3.01
2065 2115 3.243839 CCGCCAAAATTCCATTATCCCTG 60.244 47.826 0.00 0.00 0.00 4.45
2099 2149 4.158384 GTGAAAAACATCGCCACACATAG 58.842 43.478 0.00 0.00 0.00 2.23
2101 2151 2.604373 CGTGAAAAACATCGCCACACAT 60.604 45.455 0.00 0.00 0.00 3.21
2105 2155 1.950472 CTCGTGAAAAACATCGCCAC 58.050 50.000 0.00 0.00 0.00 5.01
2112 2162 4.630894 AATGTCTTGCTCGTGAAAAACA 57.369 36.364 0.00 0.00 0.00 2.83
2183 2251 2.039216 TCTCCCGTGCCATTTCTTTACA 59.961 45.455 0.00 0.00 0.00 2.41
2272 2381 2.029649 TCTGTACCTACCGTTTCTGCAC 60.030 50.000 0.00 0.00 0.00 4.57
2273 2382 2.241160 TCTGTACCTACCGTTTCTGCA 58.759 47.619 0.00 0.00 0.00 4.41
2274 2383 3.445857 GATCTGTACCTACCGTTTCTGC 58.554 50.000 0.00 0.00 0.00 4.26
2275 2384 3.376234 TCGATCTGTACCTACCGTTTCTG 59.624 47.826 0.00 0.00 0.00 3.02
2276 2385 3.376546 GTCGATCTGTACCTACCGTTTCT 59.623 47.826 0.00 0.00 0.00 2.52
2277 2386 3.488216 GGTCGATCTGTACCTACCGTTTC 60.488 52.174 0.00 0.00 32.72 2.78
2278 2387 2.424956 GGTCGATCTGTACCTACCGTTT 59.575 50.000 0.00 0.00 32.72 3.60
2279 2388 2.019984 GGTCGATCTGTACCTACCGTT 58.980 52.381 0.00 0.00 32.72 4.44
2280 2389 1.065199 TGGTCGATCTGTACCTACCGT 60.065 52.381 0.00 0.00 36.67 4.83
2281 2390 1.332997 GTGGTCGATCTGTACCTACCG 59.667 57.143 0.00 0.00 36.67 4.02
2282 2391 2.358267 CTGTGGTCGATCTGTACCTACC 59.642 54.545 0.00 0.00 36.67 3.18
2283 2392 2.223525 GCTGTGGTCGATCTGTACCTAC 60.224 54.545 0.00 7.09 36.67 3.18
2284 2393 2.022195 GCTGTGGTCGATCTGTACCTA 58.978 52.381 0.00 0.65 36.67 3.08
2285 2394 0.818296 GCTGTGGTCGATCTGTACCT 59.182 55.000 0.00 0.00 36.67 3.08
2286 2395 0.530744 TGCTGTGGTCGATCTGTACC 59.469 55.000 0.00 2.64 36.24 3.34
2287 2396 1.067846 TGTGCTGTGGTCGATCTGTAC 60.068 52.381 0.00 2.44 0.00 2.90
2288 2397 1.202348 CTGTGCTGTGGTCGATCTGTA 59.798 52.381 0.00 0.00 0.00 2.74
2289 2398 0.037882 CTGTGCTGTGGTCGATCTGT 60.038 55.000 0.00 0.00 0.00 3.41
2290 2399 1.357258 GCTGTGCTGTGGTCGATCTG 61.357 60.000 0.00 0.00 0.00 2.90
2291 2400 1.079543 GCTGTGCTGTGGTCGATCT 60.080 57.895 0.00 0.00 0.00 2.75
2292 2401 1.357258 CTGCTGTGCTGTGGTCGATC 61.357 60.000 0.00 0.00 0.00 3.69
2293 2402 1.375140 CTGCTGTGCTGTGGTCGAT 60.375 57.895 0.00 0.00 0.00 3.59
2294 2403 2.029518 CTGCTGTGCTGTGGTCGA 59.970 61.111 0.00 0.00 0.00 4.20
2295 2404 3.720193 GCTGCTGTGCTGTGGTCG 61.720 66.667 0.00 0.00 0.00 4.79
2296 2405 2.592574 TGCTGCTGTGCTGTGGTC 60.593 61.111 0.00 0.00 0.00 4.02
2297 2406 2.903855 GTGCTGCTGTGCTGTGGT 60.904 61.111 0.00 0.00 0.00 4.16
2298 2407 4.021631 CGTGCTGCTGTGCTGTGG 62.022 66.667 0.00 0.00 0.00 4.17
2299 2408 1.848932 ATTCGTGCTGCTGTGCTGTG 61.849 55.000 0.00 0.00 0.00 3.66
2312 2421 3.945921 TGAGACCTAGTACCAGATTCGTG 59.054 47.826 0.00 0.00 0.00 4.35
2313 2422 3.946558 GTGAGACCTAGTACCAGATTCGT 59.053 47.826 0.00 0.00 0.00 3.85
2326 2435 0.391130 GCAATGTGGCGTGAGACCTA 60.391 55.000 0.00 0.00 39.67 3.08
2370 2479 6.143278 TGTGTTCGCGTCATGTGATTATATAC 59.857 38.462 5.77 0.00 36.86 1.47
2375 2484 2.410392 GTGTGTTCGCGTCATGTGATTA 59.590 45.455 5.77 0.00 36.86 1.75
2376 2485 1.194547 GTGTGTTCGCGTCATGTGATT 59.805 47.619 5.77 0.00 36.86 2.57
2377 2486 0.790207 GTGTGTTCGCGTCATGTGAT 59.210 50.000 5.77 0.00 36.86 3.06
2416 2525 5.947443 AGAGCAAAGCTGTAAATTGTCATC 58.053 37.500 0.00 0.00 39.88 2.92
2447 2556 7.445402 ACACAGGCTCATAAACATGATAATACC 59.555 37.037 0.00 0.00 0.00 2.73
2453 2562 3.949754 CCACACAGGCTCATAAACATGAT 59.050 43.478 0.00 0.00 0.00 2.45
2454 2563 3.244875 ACCACACAGGCTCATAAACATGA 60.245 43.478 0.00 0.00 43.14 3.07
2455 2564 3.084039 ACCACACAGGCTCATAAACATG 58.916 45.455 0.00 0.00 43.14 3.21
2524 2656 9.790344 CATCACAGAAAGGAGAGGAATAAATAT 57.210 33.333 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.