>input_sequence_72739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATGGCCGGAAGGGGCAAGGCGATCGGCTCGGGC
GCCGCCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGC
CGGCAAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTGC
GTGGGATTATGTCATCCAATGCCTGATTTTGCTGTTTTCTGTGGTGAATTTCTAGCGGTCGGTGTCTAGTCGG-------
---TCGGTGGTTGGTTCGGCAAATTGGGGAATATTTCTAGGGTTTCGGATGAGGATGATACTTGTCTCTGCCTGCTCTCA
GATTTGTCTGGGCCTAGGCGGTTCTGCTTGCTAATTGCGCTCGAAACTTTGTGGAATTTTGGAAGTAACCGTTGCGACTC
CCTTGTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATC
CAGCTCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGTGGTGTCATGCCCAA
CATCCACAACCTCCTGCTCCCCAAGAAGGCCGGTGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>chr2D_1_TraesCS2D01G220400
CGACTCAACATCGACCACGACATTCTTCACACGGCTACCTCGACCACGGTTACACCACCATACGCTCTCGGCTACATCGA
CAAACGGCACAAAGGGCTACCGCCTTGCTTGAGCAACCTCGTCGGTTTCTACTCCAGCCACGACTTCCGCGATGCGTCGA
CCGTTACGACTGTGGGGGGTGTCCGTCGGCTTGCCTTCGGATTCTTCTCCAGTCTCACCGTCTGCGTCGCTACCGTTGTG
ACTGCGGGGGATGTTGAGTATTATGTTTAGTTAGGAAATACGAGATAGATTAGGATATGTTCCGGCTTGTCTTGTACTCC
AAATTGACCATGTACTCCTATATATATGCCCACGAGGCTCAAGCAATACAACAACTATTCCACCAAATCCCTCTCTCCCT
TCTAACGGACACCACCGGCAAGCTGCCGCCCCCGCTACCCTGATAGCCTTTAGTGTTTTCTTCACTGTCTATGCTAGCAT
TGCGCTGCTATGTATCCGCTTTTGGGCATGTATCTCTTTTGCTTTGCTTCGTTGCTCGCTAAACATTGTGTCACTTTAAC
GGACATGTGTAAGGGCA-------TTAGTTTAAGGCCGGGCAAGCGCCTCCTTTAAAAAAAACACGCACTAGCTTTCTCA
TAAGGAAATGAAAACGAGAAGCAGCCGAACAGAAGACCCGAAGCCGGCGGCCCATAGCCGCGGAGAGCAGCGGGCGGCGT
ACGACCGACCCCGAAACGGCGAAAATCCGAGGCGGCAAACCAAAAACCAACCGCCCCACGGCTCTTCCCATCTGACGGAC
AGGATCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCACTCCCCTCGCATTGGATCCCCTCGCCTA
TATAACCCAATCCCCACCCACCGCTCCTTCCTACCAGCCGTATACCCACACCACACCGCTTCCGCACTTCCTCCCGGCGC
CTCGCTTTCCATTTCACAACCGCGGATCCACTCCGAGTACTGTAGACATGGCCGGAAGGGGCAAGGCGATCGGCTCGGGC
GCCGCCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGC
CGGCAAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTGC
GTGGGATTATGTCATCCAATGCCTGATTTTGCTGTTTTCTGTGGTGAATTTCTAGCGGTCGGTGTCTAGTCGG-------
---TCGGTGGTTGGTTCGGCAAATTGGGGAATATTTCTAGGGTTTCGGATGAGGATGATACTTGTCTCTGCCTGCTCTCA
GATTTGTCTGGGCCTAGGCGGTTCTGCTTGCTAATTGCGCTCGAAACTTTGTGGAATTTTGGAAGTAACCGTTGCGACTC
CCTTGTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATC
CAGCTCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGTGGTGTCATGCCCAA
CATCCACAACCTCCTGCTCCCCAAGAAGGCCGGTGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTC
CTCCTCGGTGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAATGTTGCCTAGGTGTTGCG
TTTTACTT---CTAGGATGGTAGTACTGCTATTAGTTTCTGAATCTGTGTGCTTGTACCGGTGCTAAACTAGCCGTGGAC
AATGGTTGCATCCTTTGTAATTCGTTGTTAGTACGTTATATAAAAGTTGCACCTATGGATTGCTTACTTGCCAATTTCTA
CCACTCTGTTCTTGGTCGAAAATTTCCATCGTCTATTCTTGCCCAATTCTTTCATGGTTAGAGAACTCGATATAACTGCG
AAATCCTTACTAAAATTAATCTGCGAAGCTGTTA--------------------------GACTAAGGA---TGCTCTCG
TCTTTACAATACGTAGGTGTGCTACGGCTCGAGTCAGGGATAATGGAATTTTGGCGGGGAGTAGTGGACTATGTGTGGCG
ATGTTTTTCACGAGCAAGACAT--------------TT-GGCGGGAAATACTTGCGATCTAGTAATACC---TGGGATAA
AAAAGGATTCTGTAAAGAAATGGCACGGGAGACGAAACAATTATCACTCCTAATATAGCAGCGCTGCACATTGTTTTGAG
TGCCCTGACTATCCA-----------------------------------------GACGGTGCAGAAACGGTAGGTACA
GATCGACCACAGCACAGCAGCACGAATCTGGTACTAGGTCTCACGCCACATTGCAAAAGGCACACCAAGTCGCCCAGAGT
ATATAATCACATGACGCGAACACACAGGATGTTTCAGTTGAAAGGATGACAATTTACAGCTTTGCTCTTTGCAAAGGTAT
TATC----------------------ATGTTTATGAGCCTGTGTGGTGCATCTCTTTCTTTCTAATGCTGCATTTATTCC
CCTAAAAG-AATACTATATTTATTCCTCTCCTTTCTGTGATGGTACAAATCCTAAGCGAAAAAACAGCAGGCAGTGTCAC
A--GTCAGTCAGCCAGCCTGCTGCTTCTTCCTCCCTCCCTGTTCTGCACGCCCGCCCTAACTAAGG
>chr2B_456
TTTTTTCATC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTCTATGCTAGCGT
TGCGCCGCTATGTATCCGCCTTCGGGCATGTATCTCTTTTGCTTTGCTTTGTTGCTCGTTAAATATTGCGTCACTTTAAC
GGTCATGTTGGATTTGTAAGTGCTTTAGTTTAAGGCCGGGCAAGCGCCTCCTTTCAAAGAAACACGTATCTCTGA---CA
TAAGGAAAAGAAAAAGAGAAATAACCGAACAGAAGCCCCAAAGCCGGCGGCCCATAGCCGCGGAGAGCAGCTGGCGGCGT
ACGACCGACCCCGAAACGGTGAAAATCCGAGGCGGCAAGCCAAAAACCAACCGCTCCACGGCTCTTCCCATCTGACGGAC
AGGATCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCATTCCCCTCGCATTGGATCCCCTCGCCTA
TATAACCCAATCCCCACCCACCGTTCCTGCCTACCAGCCGAATACCCACACCACACCGCCTCCGCACTTCCTCCCGGCGC
CTCGCTTTCCATTTCACAACCGCGGATCCCCTCGGAGTACTGTAGACATGGCCGGAAGGGGCAAGGCGATTGGTTCGGGC
GCCGCCAAGAAGGCCATCTCCAGGAGCTCCAAGGCCGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGC
CGGCAAGTACGCCGAGAGGGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTGGAGTATCTCGCCGCTGAGGTTC
GTGGGATTCTGTTATCCGCTGCCTGATTTTGCTGTTTTTTGTGGTGAATT-CGAGAGGTTGGTGACCCGTCGA-------
---TCAGTGGTTGGTTCGGCAAAGTGGGGAATATTTCTAGGGTT-CGGATGAGGATAATACTTGCGTCTGCCGGCTCTCA
GATTTGTTTGGGCATAGGTGGTTCTGCTTGCTAATTCCACTCGAAGCTTTGTGGAATTTTGGAAGTAACCGTTGCGATTC
CCTTGTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATC
CAGCTCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGCGGTGTCATGCCCAA
CATCCACAACCTTCTGCTCCCCAAGAAGGCCGGAGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTC
CTCCTCTGAGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAGTGTTGCCTAGGTGTTGCG
TTTTACTACTACTAGGATGTTAGTACTACTATTAGTTTCTGAATCTGTGTGCTTGTACCGATGCTAAACTAGGTGTGGAC
AATGGTTACATCCTCTGTAATTCGTTGCTATGTTCTATA--AAACGTTGCACCTATGGATTACTTACTTGCCAATTCGTT
GCTCTGTTC-------------TTTCCATGGTCAATTCTTGCCT-ATTGTTTCATGGTTAGAAAACGAGATATAGATGCG
AAATCC-TACTAATATTAATCTGCGAAGCTGTTC--------------------------GACAACGAGATGTGTGCTCT
TCTTTACAATCCGTAGTTGTGCTACGGCTCGAGATAGTGATAATGGAATTTTGGCGGGGAGTAG----------ATGGCG
AAGTTTTTCACGAGCAAGACAT--------------TTTGGCAGGAAATGCTTGCGATCTAAC---ACC---CGGGATAA
AAAAGGATTCCGTAAAGAAATGGCAAGGGAAATGAAACAATTATCAGTCCACATATAGCAGCGCTGCACATTGTTTTGGG
TGCCCTGACTATCCA-----------------------------------------GACG--------------------
--------ACAGCACAGCAGTGCGAATCTGGTAC---------------ATTGCAAAAGGCACACCAAGT----------
--------------CGCGAACACACAGGATGTTTCAGTTGAAAGTATGACAATTTACAGCATTGCTCTTTGCAAAAGTAT
TTGTCAAGCGCAAGCAAAAGAATCCAATGTTTATGAGCCCGTGTGGTGCATCTCTTTCTTTCTAATG-------------
-------------CTGTATTTATTCCTCTCCTTTCTGTGATGGTACAAATGTTAAGCGAAAAAACAGCAGGCAGTGTCAC
ACAGTCAGTCAACCAGCCTGCTGCTTCTTCCTCCCTCCCTGTTATGCACGCCC-------------
>chr2A_702
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGCCGGCGGCGT
ACGACCGACCCCGAAACGGCGAAAATCCGAGGCGGCAAACCAAAAACCAACCGCCCCAGGGCTCTTCCCATCTGACGGAC
AGGATCTCGCCGCTCGGCGCACGTAATCTCCGCCACGTCACCGATCCGCGCACTCTCCTCGCATTGGATCCCCTCGCCTA
TATAACCCAATCCCCACCCACCGCTCCTGCCTACCAGCCGTATACCCACACCACACCGCTTCCGCACTTCCTCCCGGCGC
CTCGTTTTCCATTTCACAACCGCGGATCCCCTCCAAGCACTGTAGACATGGCCGGAAGGGGCAAGGCGATCGGCTCGGGC
GCTGCCAAGAAGGCCATCTCCAGGAGCTCCAAGGCTGGGCTCCAGTTCCCCGTCGGCAGGATCGCGCGGTTCCTCAAGGC
CGGCAAGTACGCCGAGAGGGTCGGTGCCGGCGCCCCCGTCTACCTCGCCGCCGTGCTCGAGTATCTCGCCGCTGAGGTGC
GTGGAATTCTGTTACCCGATGCCCGATTTTGCTTCTTTGGGTGGTGAATT-CGAGCGGTTGGTGTCTCTTTCGGTCTCGT
CAATCGGTGGTTGGTTCGGCAAATTGGGGAATATTTCTAGGGTTTCGGATGAGGATAACACTTGCCTCTGCCTGCTCTCA
GATTTGTCTGGGCTTAGGCGGTTCTGCTTGTTAATTGCACTCGAGACTTTGTGGAATTTTGGAAGTAACCGCTGCGATTC
TCTTGTTTGTGCAGGTTCTGGAGTTGGCCGGGAACGCGGCGAGGGACAACAAGAAGACCCGCATCGTGCCGCGCCACATC
CAGCTCGCCGTCCGCAACGACGAGGAGCTCTCCCGCCTGCTCGGCATGGTCACAATCGCCAGCGGTGGTGTCATGCCCAA
CATCCACAACCTTCTGCTCCCCAAGAAGGCCGGAGGCAGCAAGGCCGTGGCTGCCGACGACGATAGCTAGATGACGACTC
CTC---GGTGGTCGTGGGTGCTCGGCTGTATCCAGTTCTGTGTAGTAGCGTGTTCAGTTAAATGTTGCCTAGGTGTTGCG
TTTTACTT---CTAGGATGTTAGTACTACTATTAGTTTCTGAATCTGTGTGCTTGTACCGGTGCTAAACTAGGTGTGGAC
AATGGTTACATCCTGTGTAAGTCGTTGCTAGTTCGTTCTATAAAAGTTGCACCTATGGATTGCTTACTTGCGAATTTCTA
CCACTCTGTTCTTGGTTGAAAATTTCCATGGTCTATTCTTGCTTAATTCTTTCATGGTTAGAAAACTCGATATAGCTGTG
AAATACTTACTAAAATTAATCTGTGAAGCTGTATTTTGGCATTAGTCTTGGTAACTTTTCGACTACGGA---TGTGCTTT
CCTTTACAATCCATAGGTGTGCTATGGATCGAGTTAGGGATAATGGAATTTTGGCGGGGAGTTGTGGATTTTGTATGGCC
AAGTTTTTGATGAGCCAAGACATTTGGAAACAGTGCTTAGGCGGGAAATACTTGCGATCTAAC---ACCAGCTGGGATAA
AAAAGGATTCCCTAGAGAAATGGCAC-GGAGATGAAACAATTATCACTCCAAATATAGCAGCGCTGCACATTGTTTTGAG
CGCCCTGACTATCCAGACGGTGCGGAAACGGTAGGTACAGATAGAGGAAACGAAGCGACG--------------------
--------ACAGCACAGCAGTGCGAATCTGGTACCAGGTCTCACTCCACATTGCAAAAGGCACACCAAGTCGCCCAGATT
ATAC--TCACATGACGCGAACACACAGGATGTTTCAGTTGAAAGCATGGCAATTTACAGCGTTGCTCTTTGCAAAAGTA-
TTGTCAAGCGCAGGCAAAAGAATCCAATGTCTATGAGCCTGTGTGGTGCATCTCTTTCTTTCTAACACAC----TATTCC
CCTAAAAAAAATACTGTATTTATTCCTCTCCTTTCTGTGATGGTACAAATGCTAAGCGAAAAAACAGCAGGCAGTGTCAG
--AGTCAGTCAGCCAGCCTGCTGCTTCTTCCTCCCTCCCTGTTCTGCACGCCCGCCCTAACTAAGG
>SNPs
SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-
-----S-------------S--S--------------------------S--------S----S----S-----------
--S-----SSS-SSSSS-------------------------------------S---S-------S-SSSSSSSSSS--
--------S-----S-----SS-S-----------S---S-------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S---S----S--------------------S-----------S-S------S-------S------------
--------------------------------------------------------S-------S---------------
-------------S------------------------S--------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S--------------------S----------------------------------------------
--------------------------------------------------------------------------------
-------------------S-------S--------------------------------------------SS------
-------S------S------------S----S----S------------------------------------------
----------------S------------S-------------S------------------S-----------S-----
---------------------------------S-------------------------------S--------SS---S
----------S-----------------------S---------------------------------S-S---S-----
-S-----------------------------------------------------------SSSSS--------------
----------S---------------------S-----------------S-----------------------------
------------------------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------SS------------S---------S---------------------------------S-
---SSS--------------------------------------S---------------S--------------S----
-SSS----------------------------------------------------------------SSSSSS------
-------S-------S----------------------------------S-----------------------------
------------------------------------------------------------------
>forward_36
----------------ACGACATTCTTCACACGGCT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_1833
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CCGTGGAC
AATGGTTGCATC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
