Multiple sequence alignment - TraesCS2D01G218300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G218300 chr2D 100.000 2348 0 0 1 2348 181484887 181487234 0.000000e+00 4337.0
1 TraesCS2D01G218300 chr2D 94.424 269 13 2 1 267 584242319 584242051 1.680000e-111 412.0
2 TraesCS2D01G218300 chr2D 98.718 156 1 1 2085 2239 608443824 608443669 2.300000e-70 276.0
3 TraesCS2D01G218300 chr2D 97.500 160 3 1 2085 2243 635073438 635073279 2.970000e-69 272.0
4 TraesCS2D01G218300 chr2D 95.035 141 6 1 259 399 584242434 584242295 1.090000e-53 220.0
5 TraesCS2D01G218300 chr2D 96.923 130 4 0 269 398 456228420 456228291 3.930000e-53 219.0
6 TraesCS2D01G218300 chr2D 96.183 131 5 0 269 399 47675368 47675238 5.080000e-52 215.0
7 TraesCS2D01G218300 chr2D 95.181 83 2 2 2125 2206 592141362 592141281 1.890000e-26 130.0
8 TraesCS2D01G218300 chr2A 94.529 1718 46 17 399 2083 197226018 197227720 0.000000e+00 2608.0
9 TraesCS2D01G218300 chr2A 96.296 108 4 0 2241 2348 197227714 197227821 6.670000e-41 178.0
10 TraesCS2D01G218300 chr2B 95.041 1351 35 12 423 1764 238264183 238265510 0.000000e+00 2095.0
11 TraesCS2D01G218300 chr2B 96.584 322 11 0 1763 2084 238265614 238265935 3.430000e-148 534.0
12 TraesCS2D01G218300 chr2B 99.083 109 1 0 2240 2348 238265927 238266035 1.840000e-46 196.0
13 TraesCS2D01G218300 chr3D 87.685 406 39 9 1 399 21408492 21408893 1.640000e-126 462.0
14 TraesCS2D01G218300 chr3D 94.403 268 14 1 1 267 531749658 531749925 6.040000e-111 411.0
15 TraesCS2D01G218300 chr3D 94.052 269 14 2 1 267 12232937 12233205 7.810000e-110 407.0
16 TraesCS2D01G218300 chr3D 94.007 267 15 1 1 267 608756546 608756811 1.010000e-108 403.0
17 TraesCS2D01G218300 chr3D 98.718 156 1 1 2085 2239 570493496 570493341 2.300000e-70 276.0
18 TraesCS2D01G218300 chr3D 96.875 160 4 1 2081 2239 363604353 363604512 1.380000e-67 267.0
19 TraesCS2D01G218300 chr3D 96.154 130 5 0 269 398 257043689 257043560 1.830000e-51 213.0
20 TraesCS2D01G218300 chr6B 89.820 334 27 5 1 329 131667154 131666823 2.790000e-114 422.0
21 TraesCS2D01G218300 chr1D 94.776 268 13 1 1 267 383175721 383175988 1.300000e-112 416.0
22 TraesCS2D01G218300 chr5D 93.750 272 15 2 1 270 510913829 510914100 7.810000e-110 407.0
23 TraesCS2D01G218300 chr5D 95.000 160 6 2 2085 2243 59832901 59832743 1.390000e-62 250.0
24 TraesCS2D01G218300 chrUn 93.633 267 17 0 1 267 173753076 173753342 1.310000e-107 399.0
25 TraesCS2D01G218300 chr1A 96.183 131 5 0 269 399 143817297 143817167 5.080000e-52 215.0
26 TraesCS2D01G218300 chr4A 93.617 141 7 2 259 399 91231933 91232071 2.360000e-50 209.0
27 TraesCS2D01G218300 chr3A 95.420 131 6 0 269 399 210579300 210579170 2.360000e-50 209.0
28 TraesCS2D01G218300 chr4D 94.737 133 7 0 263 395 40817644 40817776 8.500000e-50 207.0
29 TraesCS2D01G218300 chr7D 98.148 54 1 0 2085 2138 81883180 81883127 6.910000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G218300 chr2D 181484887 181487234 2347 False 4337.000000 4337 100.000000 1 2348 1 chr2D.!!$F1 2347
1 TraesCS2D01G218300 chr2A 197226018 197227821 1803 False 1393.000000 2608 95.412500 399 2348 2 chr2A.!!$F1 1949
2 TraesCS2D01G218300 chr2B 238264183 238266035 1852 False 941.666667 2095 96.902667 423 2348 3 chr2B.!!$F1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.036306 ACCTAGGAGCCAAAACACCG 59.964 55.0 17.98 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 2339 0.032952 GCCTGTCCAACACTGTACGA 59.967 55.0 0.0 0.0 0.0 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.565679 GTGCGTGCACAAAGTTTTCG 59.434 50.000 19.45 0.00 45.53 3.46
21 22 0.448197 TGCGTGCACAAAGTTTTCGA 59.552 45.000 18.64 0.00 0.00 3.71
22 23 1.064803 TGCGTGCACAAAGTTTTCGAT 59.935 42.857 18.64 0.00 0.00 3.59
23 24 1.447938 GCGTGCACAAAGTTTTCGATG 59.552 47.619 18.64 0.00 0.00 3.84
24 25 2.852901 GCGTGCACAAAGTTTTCGATGA 60.853 45.455 18.64 0.00 0.00 2.92
25 26 3.358775 CGTGCACAAAGTTTTCGATGAA 58.641 40.909 18.64 0.00 0.00 2.57
26 27 3.788694 CGTGCACAAAGTTTTCGATGAAA 59.211 39.130 18.64 0.00 0.00 2.69
27 28 4.264145 CGTGCACAAAGTTTTCGATGAAAA 59.736 37.500 18.64 0.81 38.90 2.29
28 29 5.220117 CGTGCACAAAGTTTTCGATGAAAAA 60.220 36.000 18.64 0.00 42.09 1.94
29 30 5.951494 GTGCACAAAGTTTTCGATGAAAAAC 59.049 36.000 13.17 2.84 42.09 2.43
37 38 6.563398 GTTTTCGATGAAAAACGAGGTTTT 57.437 33.333 6.31 0.00 45.94 2.43
45 46 3.603158 AAAACGAGGTTTTTGTGGCTT 57.397 38.095 0.88 0.00 42.11 4.35
46 47 2.577449 AACGAGGTTTTTGTGGCTTG 57.423 45.000 0.00 0.00 0.00 4.01
47 48 1.470051 ACGAGGTTTTTGTGGCTTGT 58.530 45.000 0.00 0.00 0.00 3.16
48 49 1.134175 ACGAGGTTTTTGTGGCTTGTG 59.866 47.619 0.00 0.00 0.00 3.33
49 50 1.134175 CGAGGTTTTTGTGGCTTGTGT 59.866 47.619 0.00 0.00 0.00 3.72
50 51 2.356382 CGAGGTTTTTGTGGCTTGTGTA 59.644 45.455 0.00 0.00 0.00 2.90
51 52 3.181495 CGAGGTTTTTGTGGCTTGTGTAA 60.181 43.478 0.00 0.00 0.00 2.41
52 53 4.675671 CGAGGTTTTTGTGGCTTGTGTAAA 60.676 41.667 0.00 0.00 0.00 2.01
53 54 5.153950 AGGTTTTTGTGGCTTGTGTAAAA 57.846 34.783 0.00 0.00 0.00 1.52
54 55 5.552178 AGGTTTTTGTGGCTTGTGTAAAAA 58.448 33.333 0.00 0.00 0.00 1.94
74 75 4.859304 AAAGACAATTGCTGATGCTTCA 57.141 36.364 5.05 1.92 40.48 3.02
75 76 5.401531 AAAGACAATTGCTGATGCTTCAT 57.598 34.783 5.05 0.00 40.48 2.57
76 77 5.401531 AAGACAATTGCTGATGCTTCATT 57.598 34.783 5.05 0.00 40.48 2.57
77 78 6.519679 AAGACAATTGCTGATGCTTCATTA 57.480 33.333 5.05 0.00 40.48 1.90
78 79 6.710597 AGACAATTGCTGATGCTTCATTAT 57.289 33.333 5.05 0.00 40.48 1.28
79 80 7.812690 AGACAATTGCTGATGCTTCATTATA 57.187 32.000 5.05 0.00 40.48 0.98
80 81 8.229253 AGACAATTGCTGATGCTTCATTATAA 57.771 30.769 5.05 0.00 40.48 0.98
81 82 8.133627 AGACAATTGCTGATGCTTCATTATAAC 58.866 33.333 5.05 0.00 40.48 1.89
82 83 8.004087 ACAATTGCTGATGCTTCATTATAACT 57.996 30.769 5.05 0.00 40.48 2.24
83 84 9.123902 ACAATTGCTGATGCTTCATTATAACTA 57.876 29.630 5.05 0.00 40.48 2.24
87 88 8.907222 TGCTGATGCTTCATTATAACTATTCA 57.093 30.769 2.33 0.00 40.48 2.57
88 89 8.777413 TGCTGATGCTTCATTATAACTATTCAC 58.223 33.333 2.33 0.00 40.48 3.18
89 90 7.954248 GCTGATGCTTCATTATAACTATTCACG 59.046 37.037 2.33 0.00 36.03 4.35
90 91 9.196552 CTGATGCTTCATTATAACTATTCACGA 57.803 33.333 2.33 0.00 0.00 4.35
91 92 9.196552 TGATGCTTCATTATAACTATTCACGAG 57.803 33.333 0.00 0.00 0.00 4.18
92 93 7.946655 TGCTTCATTATAACTATTCACGAGG 57.053 36.000 0.00 0.00 0.00 4.63
93 94 6.423905 TGCTTCATTATAACTATTCACGAGGC 59.576 38.462 0.00 0.00 0.00 4.70
94 95 6.423905 GCTTCATTATAACTATTCACGAGGCA 59.576 38.462 0.00 0.00 0.00 4.75
95 96 7.118390 GCTTCATTATAACTATTCACGAGGCAT 59.882 37.037 0.00 0.00 0.00 4.40
96 97 8.902540 TTCATTATAACTATTCACGAGGCATT 57.097 30.769 0.00 0.00 0.00 3.56
97 98 8.902540 TCATTATAACTATTCACGAGGCATTT 57.097 30.769 0.00 0.00 0.00 2.32
98 99 8.988934 TCATTATAACTATTCACGAGGCATTTC 58.011 33.333 0.00 0.00 0.00 2.17
99 100 8.993121 CATTATAACTATTCACGAGGCATTTCT 58.007 33.333 0.00 0.00 0.00 2.52
100 101 8.958119 TTATAACTATTCACGAGGCATTTCTT 57.042 30.769 0.00 0.00 0.00 2.52
101 102 7.865706 ATAACTATTCACGAGGCATTTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
102 103 8.958119 ATAACTATTCACGAGGCATTTCTTTA 57.042 30.769 0.00 0.00 0.00 1.85
103 104 7.865706 AACTATTCACGAGGCATTTCTTTAT 57.134 32.000 0.00 0.00 0.00 1.40
104 105 7.484035 ACTATTCACGAGGCATTTCTTTATC 57.516 36.000 0.00 0.00 0.00 1.75
105 106 7.275920 ACTATTCACGAGGCATTTCTTTATCT 58.724 34.615 0.00 0.00 0.00 1.98
106 107 7.770897 ACTATTCACGAGGCATTTCTTTATCTT 59.229 33.333 0.00 0.00 0.00 2.40
107 108 6.817765 TTCACGAGGCATTTCTTTATCTTT 57.182 33.333 0.00 0.00 0.00 2.52
108 109 6.817765 TCACGAGGCATTTCTTTATCTTTT 57.182 33.333 0.00 0.00 0.00 2.27
109 110 7.214467 TCACGAGGCATTTCTTTATCTTTTT 57.786 32.000 0.00 0.00 0.00 1.94
146 147 5.594215 AAAACGTCGTTTTTCATCGAAAC 57.406 34.783 26.23 0.00 42.11 2.78
147 148 4.525411 AACGTCGTTTTTCATCGAAACT 57.475 36.364 4.40 0.00 37.81 2.66
148 149 4.525411 ACGTCGTTTTTCATCGAAACTT 57.475 36.364 0.00 0.00 37.81 2.66
149 150 4.900664 ACGTCGTTTTTCATCGAAACTTT 58.099 34.783 0.00 0.00 37.81 2.66
150 151 4.726704 ACGTCGTTTTTCATCGAAACTTTG 59.273 37.500 0.00 0.00 37.81 2.77
151 152 4.726704 CGTCGTTTTTCATCGAAACTTTGT 59.273 37.500 0.00 0.00 37.81 2.83
152 153 5.329768 CGTCGTTTTTCATCGAAACTTTGTG 60.330 40.000 0.00 0.00 37.81 3.33
153 154 4.497608 TCGTTTTTCATCGAAACTTTGTGC 59.502 37.500 0.00 0.00 35.40 4.57
154 155 4.264145 CGTTTTTCATCGAAACTTTGTGCA 59.736 37.500 0.00 0.00 35.40 4.57
155 156 5.480603 GTTTTTCATCGAAACTTTGTGCAC 58.519 37.500 10.75 10.75 34.87 4.57
156 157 2.661504 TCATCGAAACTTTGTGCACG 57.338 45.000 13.13 0.00 0.00 5.34
157 158 2.205911 TCATCGAAACTTTGTGCACGA 58.794 42.857 13.13 7.71 0.00 4.35
158 159 2.609916 TCATCGAAACTTTGTGCACGAA 59.390 40.909 18.49 18.49 33.77 3.85
159 160 2.445453 TCGAAACTTTGTGCACGAAC 57.555 45.000 15.77 5.33 0.00 3.95
160 161 1.732809 TCGAAACTTTGTGCACGAACA 59.267 42.857 15.77 0.00 0.00 3.18
161 162 2.353269 TCGAAACTTTGTGCACGAACAT 59.647 40.909 15.77 4.29 0.00 2.71
162 163 3.556365 TCGAAACTTTGTGCACGAACATA 59.444 39.130 15.77 0.00 0.00 2.29
163 164 3.900116 CGAAACTTTGTGCACGAACATAG 59.100 43.478 15.77 8.60 35.83 2.23
164 165 4.318475 CGAAACTTTGTGCACGAACATAGA 60.318 41.667 15.77 0.00 34.41 1.98
165 166 5.493133 AAACTTTGTGCACGAACATAGAA 57.507 34.783 15.77 0.00 34.41 2.10
166 167 5.689383 AACTTTGTGCACGAACATAGAAT 57.311 34.783 15.77 0.00 34.41 2.40
167 168 5.034554 ACTTTGTGCACGAACATAGAATG 57.965 39.130 15.77 6.19 34.41 2.67
169 170 4.661993 TTGTGCACGAACATAGAATGTC 57.338 40.909 13.13 0.00 44.07 3.06
170 171 3.000041 TGTGCACGAACATAGAATGTCC 59.000 45.455 13.13 0.00 44.07 4.02
171 172 2.029244 GTGCACGAACATAGAATGTCCG 59.971 50.000 0.00 0.00 46.90 4.79
172 173 1.593006 GCACGAACATAGAATGTCCGG 59.407 52.381 3.78 0.00 45.74 5.14
173 174 2.737359 GCACGAACATAGAATGTCCGGA 60.737 50.000 0.00 0.00 45.74 5.14
174 175 3.717707 CACGAACATAGAATGTCCGGAT 58.282 45.455 7.81 0.00 45.74 4.18
175 176 4.794981 GCACGAACATAGAATGTCCGGATA 60.795 45.833 7.81 4.93 45.74 2.59
176 177 5.470368 CACGAACATAGAATGTCCGGATAT 58.530 41.667 7.81 7.95 45.74 1.63
177 178 6.617879 CACGAACATAGAATGTCCGGATATA 58.382 40.000 14.71 0.00 45.74 0.86
178 179 6.527023 CACGAACATAGAATGTCCGGATATAC 59.473 42.308 14.71 0.00 45.74 1.47
179 180 6.034591 CGAACATAGAATGTCCGGATATACC 58.965 44.000 14.71 9.45 44.07 2.73
180 181 5.934402 ACATAGAATGTCCGGATATACCC 57.066 43.478 14.71 7.04 39.92 3.69
181 182 4.401519 ACATAGAATGTCCGGATATACCCG 59.598 45.833 14.71 0.00 39.92 5.28
182 183 7.127252 ACATAGAATGTCCGGATATACCCGC 62.127 48.000 14.71 2.49 40.26 6.13
196 197 3.116073 CCCGCGGGATTTTTGTTTC 57.884 52.632 41.82 0.00 37.50 2.78
197 198 0.731174 CCCGCGGGATTTTTGTTTCG 60.731 55.000 41.82 6.56 37.50 3.46
198 199 0.238817 CCGCGGGATTTTTGTTTCGA 59.761 50.000 20.10 0.00 0.00 3.71
199 200 1.335142 CCGCGGGATTTTTGTTTCGAA 60.335 47.619 20.10 0.00 0.00 3.71
200 201 2.591133 CGCGGGATTTTTGTTTCGAAT 58.409 42.857 0.00 0.00 0.00 3.34
201 202 2.983803 CGCGGGATTTTTGTTTCGAATT 59.016 40.909 0.00 0.00 0.00 2.17
202 203 3.427193 CGCGGGATTTTTGTTTCGAATTT 59.573 39.130 0.00 0.00 0.00 1.82
203 204 4.084797 CGCGGGATTTTTGTTTCGAATTTT 60.085 37.500 0.00 0.00 0.00 1.82
204 205 5.557325 CGCGGGATTTTTGTTTCGAATTTTT 60.557 36.000 0.00 0.00 0.00 1.94
205 206 5.843878 GCGGGATTTTTGTTTCGAATTTTTC 59.156 36.000 0.00 0.00 0.00 2.29
206 207 6.510317 GCGGGATTTTTGTTTCGAATTTTTCA 60.510 34.615 0.00 0.00 0.00 2.69
207 208 7.402640 CGGGATTTTTGTTTCGAATTTTTCAA 58.597 30.769 0.00 0.00 0.00 2.69
208 209 7.372135 CGGGATTTTTGTTTCGAATTTTTCAAC 59.628 33.333 0.00 0.00 0.00 3.18
209 210 8.394877 GGGATTTTTGTTTCGAATTTTTCAACT 58.605 29.630 0.00 0.00 0.00 3.16
210 211 9.767684 GGATTTTTGTTTCGAATTTTTCAACTT 57.232 25.926 0.00 0.00 0.00 2.66
221 222 9.752274 TCGAATTTTTCAACTTTTCAAAATGTG 57.248 25.926 0.00 0.00 30.89 3.21
222 223 9.540431 CGAATTTTTCAACTTTTCAAAATGTGT 57.460 25.926 0.00 0.00 30.89 3.72
229 230 9.698309 TTCAACTTTTCAAAATGTGTGTTTAGA 57.302 25.926 0.00 0.00 0.00 2.10
230 231 9.134734 TCAACTTTTCAAAATGTGTGTTTAGAC 57.865 29.630 0.00 0.00 0.00 2.59
231 232 8.920665 CAACTTTTCAAAATGTGTGTTTAGACA 58.079 29.630 0.00 0.00 34.29 3.41
232 233 9.482627 AACTTTTCAAAATGTGTGTTTAGACAA 57.517 25.926 0.00 0.00 37.57 3.18
233 234 9.651913 ACTTTTCAAAATGTGTGTTTAGACAAT 57.348 25.926 0.00 0.00 37.57 2.71
234 235 9.904647 CTTTTCAAAATGTGTGTTTAGACAATG 57.095 29.630 0.00 0.00 37.57 2.82
235 236 8.417780 TTTCAAAATGTGTGTTTAGACAATGG 57.582 30.769 0.00 0.00 37.57 3.16
236 237 6.511416 TCAAAATGTGTGTTTAGACAATGGG 58.489 36.000 0.00 0.00 37.57 4.00
237 238 6.097554 TCAAAATGTGTGTTTAGACAATGGGT 59.902 34.615 0.00 0.00 37.57 4.51
238 239 5.452078 AATGTGTGTTTAGACAATGGGTG 57.548 39.130 0.00 0.00 37.57 4.61
239 240 2.621055 TGTGTGTTTAGACAATGGGTGC 59.379 45.455 0.00 0.00 37.57 5.01
240 241 2.621055 GTGTGTTTAGACAATGGGTGCA 59.379 45.455 0.00 0.00 37.57 4.57
241 242 3.255642 GTGTGTTTAGACAATGGGTGCAT 59.744 43.478 0.00 0.00 37.57 3.96
242 243 4.457603 GTGTGTTTAGACAATGGGTGCATA 59.542 41.667 0.00 0.00 37.57 3.14
243 244 5.125417 GTGTGTTTAGACAATGGGTGCATAT 59.875 40.000 0.00 0.00 37.57 1.78
244 245 5.125257 TGTGTTTAGACAATGGGTGCATATG 59.875 40.000 0.00 0.00 37.57 1.78
245 246 4.097741 TGTTTAGACAATGGGTGCATATGC 59.902 41.667 21.09 21.09 35.55 3.14
246 247 6.328381 TGTTTAGACAATGGGTGCATATGCA 61.328 40.000 26.32 26.32 39.97 3.96
256 257 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
257 258 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
258 259 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
259 260 2.749466 GCATATGCACCTAGGAGCCAAA 60.749 50.000 25.94 13.05 41.59 3.28
260 261 3.554934 CATATGCACCTAGGAGCCAAAA 58.445 45.455 25.94 9.83 0.00 2.44
261 262 1.839424 ATGCACCTAGGAGCCAAAAC 58.161 50.000 25.94 0.85 0.00 2.43
262 263 0.476338 TGCACCTAGGAGCCAAAACA 59.524 50.000 25.94 5.69 0.00 2.83
263 264 0.881796 GCACCTAGGAGCCAAAACAC 59.118 55.000 19.57 0.00 0.00 3.32
264 265 1.534729 CACCTAGGAGCCAAAACACC 58.465 55.000 17.98 0.00 0.00 4.16
265 266 0.036306 ACCTAGGAGCCAAAACACCG 59.964 55.000 17.98 0.00 0.00 4.94
266 267 1.305930 CCTAGGAGCCAAAACACCGC 61.306 60.000 1.05 0.00 0.00 5.68
267 268 0.321653 CTAGGAGCCAAAACACCGCT 60.322 55.000 0.00 0.00 34.97 5.52
268 269 0.978151 TAGGAGCCAAAACACCGCTA 59.022 50.000 0.00 0.00 31.61 4.26
269 270 0.109723 AGGAGCCAAAACACCGCTAA 59.890 50.000 0.00 0.00 31.61 3.09
270 271 1.173913 GGAGCCAAAACACCGCTAAT 58.826 50.000 0.00 0.00 31.61 1.73
271 272 1.544246 GGAGCCAAAACACCGCTAATT 59.456 47.619 0.00 0.00 31.61 1.40
272 273 2.595386 GAGCCAAAACACCGCTAATTG 58.405 47.619 0.00 0.00 31.61 2.32
273 274 1.272212 AGCCAAAACACCGCTAATTGG 59.728 47.619 0.00 0.00 42.68 3.16
274 275 1.708822 CCAAAACACCGCTAATTGGC 58.291 50.000 3.26 3.26 34.67 4.52
275 276 1.272212 CCAAAACACCGCTAATTGGCT 59.728 47.619 12.29 0.00 34.67 4.75
276 277 2.490115 CCAAAACACCGCTAATTGGCTA 59.510 45.455 12.29 0.00 34.67 3.93
277 278 3.130340 CCAAAACACCGCTAATTGGCTAT 59.870 43.478 12.29 0.00 34.67 2.97
278 279 4.104776 CAAAACACCGCTAATTGGCTATG 58.895 43.478 12.29 11.62 0.00 2.23
279 280 1.967319 ACACCGCTAATTGGCTATGG 58.033 50.000 12.29 8.31 0.00 2.74
280 281 0.593128 CACCGCTAATTGGCTATGGC 59.407 55.000 12.29 0.00 37.82 4.40
281 282 0.474184 ACCGCTAATTGGCTATGGCT 59.526 50.000 12.29 0.00 38.73 4.75
282 283 1.160137 CCGCTAATTGGCTATGGCTC 58.840 55.000 12.29 0.00 38.73 4.70
283 284 1.160137 CGCTAATTGGCTATGGCTCC 58.840 55.000 12.29 0.00 38.73 4.70
284 285 1.271054 CGCTAATTGGCTATGGCTCCT 60.271 52.381 12.29 0.00 38.73 3.69
285 286 2.028112 CGCTAATTGGCTATGGCTCCTA 60.028 50.000 12.29 0.00 38.73 2.94
286 287 3.604582 GCTAATTGGCTATGGCTCCTAG 58.395 50.000 6.53 0.00 38.73 3.02
287 288 3.620966 GCTAATTGGCTATGGCTCCTAGG 60.621 52.174 6.53 0.82 38.73 3.02
288 289 2.124560 ATTGGCTATGGCTCCTAGGT 57.875 50.000 9.08 0.00 38.73 3.08
289 290 1.131638 TTGGCTATGGCTCCTAGGTG 58.868 55.000 9.08 7.68 38.73 4.00
290 291 1.373059 GGCTATGGCTCCTAGGTGC 59.627 63.158 24.68 24.68 38.73 5.01
291 292 1.410850 GGCTATGGCTCCTAGGTGCA 61.411 60.000 31.19 19.96 38.73 4.57
292 293 0.689623 GCTATGGCTCCTAGGTGCAT 59.310 55.000 31.19 23.98 36.47 3.96
293 294 1.902508 GCTATGGCTCCTAGGTGCATA 59.097 52.381 31.19 23.85 36.47 3.14
294 295 2.503356 GCTATGGCTCCTAGGTGCATAT 59.497 50.000 31.19 25.60 36.47 1.78
295 296 3.681034 GCTATGGCTCCTAGGTGCATATG 60.681 52.174 31.19 20.36 36.47 1.78
296 297 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
310 311 4.916983 GCATATGCACCCATTGTCTAAA 57.083 40.909 22.84 0.00 41.59 1.85
311 312 5.458041 GCATATGCACCCATTGTCTAAAT 57.542 39.130 22.84 0.00 41.59 1.40
312 313 6.573664 GCATATGCACCCATTGTCTAAATA 57.426 37.500 22.84 0.00 41.59 1.40
313 314 6.381801 GCATATGCACCCATTGTCTAAATAC 58.618 40.000 22.84 0.00 41.59 1.89
314 315 6.016360 GCATATGCACCCATTGTCTAAATACA 60.016 38.462 22.84 0.00 41.59 2.29
315 316 5.835113 ATGCACCCATTGTCTAAATACAC 57.165 39.130 0.00 0.00 0.00 2.90
316 317 4.657013 TGCACCCATTGTCTAAATACACA 58.343 39.130 0.00 0.00 0.00 3.72
317 318 5.260424 TGCACCCATTGTCTAAATACACAT 58.740 37.500 0.00 0.00 0.00 3.21
318 319 5.714333 TGCACCCATTGTCTAAATACACATT 59.286 36.000 0.00 0.00 0.00 2.71
319 320 6.210385 TGCACCCATTGTCTAAATACACATTT 59.790 34.615 0.00 0.00 38.02 2.32
320 321 7.096551 GCACCCATTGTCTAAATACACATTTT 58.903 34.615 0.00 0.00 35.88 1.82
321 322 7.063308 GCACCCATTGTCTAAATACACATTTTG 59.937 37.037 0.00 0.00 35.88 2.44
322 323 8.303156 CACCCATTGTCTAAATACACATTTTGA 58.697 33.333 0.00 0.00 35.88 2.69
323 324 8.865090 ACCCATTGTCTAAATACACATTTTGAA 58.135 29.630 0.00 0.00 37.54 2.69
324 325 9.703892 CCCATTGTCTAAATACACATTTTGAAA 57.296 29.630 0.00 0.00 37.54 2.69
338 339 9.838975 ACACATTTTGAAAAGTTGAAAAATTCC 57.161 25.926 7.93 0.00 30.03 3.01
339 340 8.997960 CACATTTTGAAAAGTTGAAAAATTCCG 58.002 29.630 0.00 0.00 30.03 4.30
340 341 8.940952 ACATTTTGAAAAGTTGAAAAATTCCGA 58.059 25.926 0.00 0.00 30.03 4.55
341 342 9.766277 CATTTTGAAAAGTTGAAAAATTCCGAA 57.234 25.926 0.00 0.00 30.03 4.30
342 343 9.767684 ATTTTGAAAAGTTGAAAAATTCCGAAC 57.232 25.926 0.00 0.00 30.03 3.95
343 344 7.891183 TTGAAAAGTTGAAAAATTCCGAACA 57.109 28.000 0.00 0.00 30.03 3.18
344 345 7.891183 TGAAAAGTTGAAAAATTCCGAACAA 57.109 28.000 0.00 0.00 30.03 2.83
345 346 8.311650 TGAAAAGTTGAAAAATTCCGAACAAA 57.688 26.923 0.00 0.00 30.03 2.83
346 347 8.774586 TGAAAAGTTGAAAAATTCCGAACAAAA 58.225 25.926 0.00 0.00 30.03 2.44
347 348 9.600646 GAAAAGTTGAAAAATTCCGAACAAAAA 57.399 25.926 0.00 0.00 30.03 1.94
349 350 9.767684 AAAGTTGAAAAATTCCGAACAAAAATC 57.232 25.926 0.00 0.00 30.03 2.17
350 351 7.915508 AGTTGAAAAATTCCGAACAAAAATCC 58.084 30.769 0.00 0.00 0.00 3.01
351 352 6.852858 TGAAAAATTCCGAACAAAAATCCC 57.147 33.333 0.00 0.00 0.00 3.85
352 353 5.463724 TGAAAAATTCCGAACAAAAATCCCG 59.536 36.000 0.00 0.00 0.00 5.14
353 354 2.647529 ATTCCGAACAAAAATCCCGC 57.352 45.000 0.00 0.00 0.00 6.13
354 355 0.238817 TTCCGAACAAAAATCCCGCG 59.761 50.000 0.00 0.00 0.00 6.46
355 356 1.154112 CCGAACAAAAATCCCGCGG 60.154 57.895 21.04 21.04 0.00 6.46
356 357 1.154112 CGAACAAAAATCCCGCGGG 60.154 57.895 39.13 39.13 0.00 6.13
357 358 1.858372 CGAACAAAAATCCCGCGGGT 61.858 55.000 41.57 26.88 36.47 5.28
358 359 1.166989 GAACAAAAATCCCGCGGGTA 58.833 50.000 41.57 28.68 36.47 3.69
359 360 1.746787 GAACAAAAATCCCGCGGGTAT 59.253 47.619 41.57 29.53 36.47 2.73
360 361 2.713863 ACAAAAATCCCGCGGGTATA 57.286 45.000 41.57 25.51 36.47 1.47
361 362 3.217681 ACAAAAATCCCGCGGGTATAT 57.782 42.857 41.57 26.64 36.47 0.86
362 363 3.143728 ACAAAAATCCCGCGGGTATATC 58.856 45.455 41.57 0.00 36.47 1.63
363 364 2.484742 AAAATCCCGCGGGTATATCC 57.515 50.000 41.57 0.00 36.47 2.59
378 379 5.581085 GGGTATATCCGAACATTCTATGTGC 59.419 44.000 0.00 0.00 39.39 4.57
384 385 2.774007 GAACATTCTATGTGCGTGCAC 58.226 47.619 17.72 17.72 44.07 4.57
394 395 0.565679 GTGCGTGCACAAAGTTTTCG 59.434 50.000 19.45 0.00 45.53 3.46
395 396 0.448197 TGCGTGCACAAAGTTTTCGA 59.552 45.000 18.64 0.00 0.00 3.71
396 397 1.064803 TGCGTGCACAAAGTTTTCGAT 59.935 42.857 18.64 0.00 0.00 3.59
397 398 1.447938 GCGTGCACAAAGTTTTCGATG 59.552 47.619 18.64 0.00 0.00 3.84
405 406 5.795441 GCACAAAGTTTTCGATGATACCTTC 59.205 40.000 0.00 0.00 0.00 3.46
417 418 4.695217 TGATACCTTCAAACGGCATTTC 57.305 40.909 0.00 0.00 0.00 2.17
894 914 0.745845 GGCCGTCATCTTCTGCACAT 60.746 55.000 0.00 0.00 0.00 3.21
919 939 0.825010 CCAAGGCAAGCACCAAGTCT 60.825 55.000 0.00 0.00 0.00 3.24
928 948 0.173708 GCACCAAGTCTACTCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
1134 1155 1.347817 CGTCTGCTTCTGCTTCCGAC 61.348 60.000 0.00 0.00 40.48 4.79
1425 1446 2.584492 TGTAGCGAGGACATGACATG 57.416 50.000 14.02 14.02 0.00 3.21
1546 1568 1.371183 GCAGGTCCAGTGTGCTGTA 59.629 57.895 0.00 0.00 41.02 2.74
1558 1580 1.281867 TGTGCTGTATAGGCCTTGCTT 59.718 47.619 12.58 0.00 0.00 3.91
1559 1581 2.290896 TGTGCTGTATAGGCCTTGCTTT 60.291 45.455 12.58 0.00 0.00 3.51
1571 1596 5.551233 AGGCCTTGCTTTAAATCCTTTTTC 58.449 37.500 0.00 0.00 0.00 2.29
1572 1597 5.071653 AGGCCTTGCTTTAAATCCTTTTTCA 59.928 36.000 0.00 0.00 0.00 2.69
1573 1598 5.939883 GGCCTTGCTTTAAATCCTTTTTCAT 59.060 36.000 0.00 0.00 0.00 2.57
1574 1599 7.038373 AGGCCTTGCTTTAAATCCTTTTTCATA 60.038 33.333 0.00 0.00 0.00 2.15
1575 1600 7.064609 GGCCTTGCTTTAAATCCTTTTTCATAC 59.935 37.037 0.00 0.00 0.00 2.39
1604 1635 2.040145 TCTGGAATCATGGTGTGCTTGA 59.960 45.455 0.00 0.00 0.00 3.02
1639 1670 5.939296 TGAGTGAATGATGCATGTCAAGTTA 59.061 36.000 2.46 0.00 0.00 2.24
1649 1680 7.863877 TGATGCATGTCAAGTTATTATCATTGC 59.136 33.333 2.46 0.00 0.00 3.56
1729 1766 1.296715 GGTGATGAGTTGCCGTCCT 59.703 57.895 0.00 0.00 0.00 3.85
1730 1767 0.535335 GGTGATGAGTTGCCGTCCTA 59.465 55.000 0.00 0.00 0.00 2.94
1731 1768 1.471676 GGTGATGAGTTGCCGTCCTAG 60.472 57.143 0.00 0.00 0.00 3.02
1801 1943 5.517770 GCATGTGATCTTTTTATCAGTTGCC 59.482 40.000 0.00 0.00 38.16 4.52
2083 2229 7.852945 GCTACAACATGTGCAATAATTCTAGAC 59.147 37.037 0.00 0.00 0.00 2.59
2084 2230 7.088589 ACAACATGTGCAATAATTCTAGACC 57.911 36.000 0.00 0.00 0.00 3.85
2085 2231 6.658816 ACAACATGTGCAATAATTCTAGACCA 59.341 34.615 0.00 0.00 0.00 4.02
2086 2232 7.176515 ACAACATGTGCAATAATTCTAGACCAA 59.823 33.333 0.00 0.00 0.00 3.67
2087 2233 7.701539 ACATGTGCAATAATTCTAGACCAAA 57.298 32.000 0.00 0.00 0.00 3.28
2088 2234 8.121305 ACATGTGCAATAATTCTAGACCAAAA 57.879 30.769 0.00 0.00 0.00 2.44
2089 2235 8.028938 ACATGTGCAATAATTCTAGACCAAAAC 58.971 33.333 0.00 0.00 0.00 2.43
2090 2236 7.759489 TGTGCAATAATTCTAGACCAAAACT 57.241 32.000 0.00 0.00 0.00 2.66
2091 2237 7.592938 TGTGCAATAATTCTAGACCAAAACTG 58.407 34.615 0.00 0.00 0.00 3.16
2092 2238 6.528072 GTGCAATAATTCTAGACCAAAACTGC 59.472 38.462 0.00 0.00 0.00 4.40
2093 2239 6.434028 TGCAATAATTCTAGACCAAAACTGCT 59.566 34.615 0.00 0.00 0.00 4.24
2094 2240 6.969473 GCAATAATTCTAGACCAAAACTGCTC 59.031 38.462 0.00 0.00 0.00 4.26
2095 2241 7.148171 GCAATAATTCTAGACCAAAACTGCTCT 60.148 37.037 0.00 0.00 0.00 4.09
2096 2242 9.383519 CAATAATTCTAGACCAAAACTGCTCTA 57.616 33.333 0.00 0.00 0.00 2.43
2097 2243 8.950208 ATAATTCTAGACCAAAACTGCTCTAC 57.050 34.615 0.00 0.00 0.00 2.59
2098 2244 4.436242 TCTAGACCAAAACTGCTCTACG 57.564 45.455 0.00 0.00 0.00 3.51
2099 2245 3.825014 TCTAGACCAAAACTGCTCTACGT 59.175 43.478 0.00 0.00 0.00 3.57
2100 2246 5.005740 TCTAGACCAAAACTGCTCTACGTA 58.994 41.667 0.00 0.00 0.00 3.57
2101 2247 3.910648 AGACCAAAACTGCTCTACGTAC 58.089 45.455 0.00 0.00 0.00 3.67
2102 2248 2.660236 GACCAAAACTGCTCTACGTACG 59.340 50.000 15.01 15.01 0.00 3.67
2103 2249 2.294233 ACCAAAACTGCTCTACGTACGA 59.706 45.455 24.41 4.69 0.00 3.43
2104 2250 3.057033 ACCAAAACTGCTCTACGTACGAT 60.057 43.478 24.41 8.93 0.00 3.73
2105 2251 3.303495 CCAAAACTGCTCTACGTACGATG 59.697 47.826 24.41 13.70 0.00 3.84
2106 2252 4.163552 CAAAACTGCTCTACGTACGATGA 58.836 43.478 24.41 17.14 0.00 2.92
2107 2253 4.634184 AAACTGCTCTACGTACGATGAT 57.366 40.909 24.41 1.05 0.00 2.45
2108 2254 4.634184 AACTGCTCTACGTACGATGATT 57.366 40.909 24.41 0.61 0.00 2.57
2109 2255 4.634184 ACTGCTCTACGTACGATGATTT 57.366 40.909 24.41 0.00 0.00 2.17
2110 2256 4.995124 ACTGCTCTACGTACGATGATTTT 58.005 39.130 24.41 0.00 0.00 1.82
2111 2257 5.035443 ACTGCTCTACGTACGATGATTTTC 58.965 41.667 24.41 8.91 0.00 2.29
2112 2258 4.357142 TGCTCTACGTACGATGATTTTCC 58.643 43.478 24.41 1.57 0.00 3.13
2113 2259 3.734735 GCTCTACGTACGATGATTTTCCC 59.265 47.826 24.41 0.00 0.00 3.97
2114 2260 4.735578 GCTCTACGTACGATGATTTTCCCA 60.736 45.833 24.41 0.00 0.00 4.37
2115 2261 5.524971 TCTACGTACGATGATTTTCCCAT 57.475 39.130 24.41 0.00 0.00 4.00
2116 2262 5.526115 TCTACGTACGATGATTTTCCCATC 58.474 41.667 24.41 0.00 37.60 3.51
2117 2263 3.463944 ACGTACGATGATTTTCCCATCC 58.536 45.455 24.41 0.00 37.67 3.51
2118 2264 2.475111 CGTACGATGATTTTCCCATCCG 59.525 50.000 10.44 0.00 37.67 4.18
2119 2265 3.724374 GTACGATGATTTTCCCATCCGA 58.276 45.455 0.00 0.00 37.67 4.55
2120 2266 2.561569 ACGATGATTTTCCCATCCGAC 58.438 47.619 0.00 0.00 37.67 4.79
2121 2267 1.873591 CGATGATTTTCCCATCCGACC 59.126 52.381 0.00 0.00 37.67 4.79
2122 2268 2.230660 GATGATTTTCCCATCCGACCC 58.769 52.381 0.00 0.00 35.56 4.46
2123 2269 0.107410 TGATTTTCCCATCCGACCCG 60.107 55.000 0.00 0.00 0.00 5.28
2124 2270 0.107361 GATTTTCCCATCCGACCCGT 60.107 55.000 0.00 0.00 0.00 5.28
2125 2271 1.139455 GATTTTCCCATCCGACCCGTA 59.861 52.381 0.00 0.00 0.00 4.02
2126 2272 0.249955 TTTTCCCATCCGACCCGTAC 59.750 55.000 0.00 0.00 0.00 3.67
2127 2273 1.947597 TTTCCCATCCGACCCGTACG 61.948 60.000 8.69 8.69 0.00 3.67
2128 2274 2.829914 CCCATCCGACCCGTACGA 60.830 66.667 18.76 0.00 0.00 3.43
2129 2275 2.410469 CCATCCGACCCGTACGAC 59.590 66.667 18.76 6.91 0.00 4.34
2130 2276 2.410469 CATCCGACCCGTACGACC 59.590 66.667 18.76 4.14 0.00 4.79
2131 2277 2.045045 ATCCGACCCGTACGACCA 60.045 61.111 18.76 0.00 0.00 4.02
2132 2278 2.117156 ATCCGACCCGTACGACCAG 61.117 63.158 18.76 4.93 0.00 4.00
2133 2279 2.541547 ATCCGACCCGTACGACCAGA 62.542 60.000 18.76 7.12 0.00 3.86
2134 2280 2.758089 CCGACCCGTACGACCAGAG 61.758 68.421 18.76 0.00 0.00 3.35
2135 2281 1.742880 CGACCCGTACGACCAGAGA 60.743 63.158 18.76 0.00 0.00 3.10
2136 2282 1.703438 CGACCCGTACGACCAGAGAG 61.703 65.000 18.76 0.00 0.00 3.20
2137 2283 1.991099 GACCCGTACGACCAGAGAGC 61.991 65.000 18.76 0.00 0.00 4.09
2138 2284 2.044555 CCCGTACGACCAGAGAGCA 61.045 63.158 18.76 0.00 0.00 4.26
2139 2285 1.592400 CCCGTACGACCAGAGAGCAA 61.592 60.000 18.76 0.00 0.00 3.91
2140 2286 0.456312 CCGTACGACCAGAGAGCAAC 60.456 60.000 18.76 0.00 0.00 4.17
2141 2287 0.793478 CGTACGACCAGAGAGCAACG 60.793 60.000 10.44 0.00 0.00 4.10
2142 2288 0.520404 GTACGACCAGAGAGCAACGA 59.480 55.000 0.00 0.00 0.00 3.85
2143 2289 1.132643 GTACGACCAGAGAGCAACGAT 59.867 52.381 0.00 0.00 0.00 3.73
2144 2290 0.171455 ACGACCAGAGAGCAACGATC 59.829 55.000 0.00 0.00 0.00 3.69
2145 2291 0.453793 CGACCAGAGAGCAACGATCT 59.546 55.000 0.00 0.00 0.00 2.75
2146 2292 1.532921 CGACCAGAGAGCAACGATCTC 60.533 57.143 1.03 1.03 44.32 2.75
2154 2300 5.744666 GAGAGCAACGATCTCTAACTACT 57.255 43.478 2.10 0.00 41.26 2.57
2155 2301 6.847956 GAGAGCAACGATCTCTAACTACTA 57.152 41.667 2.10 0.00 41.26 1.82
2156 2302 7.429636 GAGAGCAACGATCTCTAACTACTAT 57.570 40.000 2.10 0.00 41.26 2.12
2157 2303 7.197071 AGAGCAACGATCTCTAACTACTATG 57.803 40.000 0.00 0.00 39.00 2.23
2158 2304 6.205853 AGAGCAACGATCTCTAACTACTATGG 59.794 42.308 0.00 0.00 39.00 2.74
2159 2305 4.918583 GCAACGATCTCTAACTACTATGGC 59.081 45.833 0.00 0.00 0.00 4.40
2160 2306 5.462405 CAACGATCTCTAACTACTATGGCC 58.538 45.833 0.00 0.00 0.00 5.36
2161 2307 4.080687 ACGATCTCTAACTACTATGGCCC 58.919 47.826 0.00 0.00 0.00 5.80
2162 2308 4.079970 CGATCTCTAACTACTATGGCCCA 58.920 47.826 0.00 0.00 0.00 5.36
2163 2309 4.082679 CGATCTCTAACTACTATGGCCCAC 60.083 50.000 0.00 0.00 0.00 4.61
2164 2310 4.259933 TCTCTAACTACTATGGCCCACA 57.740 45.455 0.00 0.00 0.00 4.17
2165 2311 4.616553 TCTCTAACTACTATGGCCCACAA 58.383 43.478 0.00 0.00 0.00 3.33
2166 2312 5.027460 TCTCTAACTACTATGGCCCACAAA 58.973 41.667 0.00 0.00 0.00 2.83
2167 2313 5.093849 TCTAACTACTATGGCCCACAAAC 57.906 43.478 0.00 0.00 0.00 2.93
2168 2314 4.781087 TCTAACTACTATGGCCCACAAACT 59.219 41.667 0.00 0.00 0.00 2.66
2169 2315 3.350219 ACTACTATGGCCCACAAACTG 57.650 47.619 0.00 0.00 0.00 3.16
2170 2316 2.910319 ACTACTATGGCCCACAAACTGA 59.090 45.455 0.00 0.00 0.00 3.41
2171 2317 2.969821 ACTATGGCCCACAAACTGAA 57.030 45.000 0.00 0.00 0.00 3.02
2172 2318 3.456380 ACTATGGCCCACAAACTGAAT 57.544 42.857 0.00 0.00 0.00 2.57
2173 2319 3.778265 ACTATGGCCCACAAACTGAATT 58.222 40.909 0.00 0.00 0.00 2.17
2174 2320 4.929479 ACTATGGCCCACAAACTGAATTA 58.071 39.130 0.00 0.00 0.00 1.40
2175 2321 5.518865 ACTATGGCCCACAAACTGAATTAT 58.481 37.500 0.00 0.00 0.00 1.28
2176 2322 4.741321 ATGGCCCACAAACTGAATTATG 57.259 40.909 0.00 0.00 0.00 1.90
2177 2323 3.505386 TGGCCCACAAACTGAATTATGT 58.495 40.909 0.00 0.00 0.00 2.29
2178 2324 4.667573 TGGCCCACAAACTGAATTATGTA 58.332 39.130 0.00 0.00 0.00 2.29
2179 2325 5.268387 TGGCCCACAAACTGAATTATGTAT 58.732 37.500 0.00 0.00 0.00 2.29
2180 2326 5.126869 TGGCCCACAAACTGAATTATGTATG 59.873 40.000 0.00 0.00 0.00 2.39
2181 2327 5.359576 GGCCCACAAACTGAATTATGTATGA 59.640 40.000 0.00 0.00 0.00 2.15
2182 2328 6.040842 GGCCCACAAACTGAATTATGTATGAT 59.959 38.462 0.00 0.00 0.00 2.45
2183 2329 7.417797 GGCCCACAAACTGAATTATGTATGATT 60.418 37.037 0.00 0.00 0.00 2.57
2184 2330 7.981225 GCCCACAAACTGAATTATGTATGATTT 59.019 33.333 0.00 0.00 0.00 2.17
2185 2331 9.304731 CCCACAAACTGAATTATGTATGATTTG 57.695 33.333 0.00 0.00 0.00 2.32
2186 2332 9.304731 CCACAAACTGAATTATGTATGATTTGG 57.695 33.333 0.00 0.00 0.00 3.28
2187 2333 8.810427 CACAAACTGAATTATGTATGATTTGGC 58.190 33.333 0.00 0.00 0.00 4.52
2188 2334 8.752187 ACAAACTGAATTATGTATGATTTGGCT 58.248 29.630 0.00 0.00 0.00 4.75
2189 2335 9.241317 CAAACTGAATTATGTATGATTTGGCTC 57.759 33.333 0.00 0.00 0.00 4.70
2190 2336 8.757982 AACTGAATTATGTATGATTTGGCTCT 57.242 30.769 0.00 0.00 0.00 4.09
2191 2337 9.851686 AACTGAATTATGTATGATTTGGCTCTA 57.148 29.630 0.00 0.00 0.00 2.43
2192 2338 9.851686 ACTGAATTATGTATGATTTGGCTCTAA 57.148 29.630 0.00 0.00 0.00 2.10
2195 2341 9.979270 GAATTATGTATGATTTGGCTCTAATCG 57.021 33.333 0.00 0.00 35.29 3.34
2196 2342 9.507329 AATTATGTATGATTTGGCTCTAATCGT 57.493 29.630 8.33 8.33 35.29 3.73
2198 2344 7.891183 ATGTATGATTTGGCTCTAATCGTAC 57.109 36.000 20.99 20.99 45.77 3.67
2200 2346 7.339732 GTATGATTTGGCTCTAATCGTACAG 57.660 40.000 21.87 0.00 45.34 2.74
2201 2347 5.339008 TGATTTGGCTCTAATCGTACAGT 57.661 39.130 0.00 0.00 35.29 3.55
2202 2348 5.109210 TGATTTGGCTCTAATCGTACAGTG 58.891 41.667 0.00 0.00 35.29 3.66
2203 2349 4.530710 TTTGGCTCTAATCGTACAGTGT 57.469 40.909 0.00 0.00 0.00 3.55
2204 2350 4.530710 TTGGCTCTAATCGTACAGTGTT 57.469 40.909 0.00 0.00 0.00 3.32
2205 2351 3.845178 TGGCTCTAATCGTACAGTGTTG 58.155 45.455 0.00 0.00 0.00 3.33
2206 2352 3.187700 GGCTCTAATCGTACAGTGTTGG 58.812 50.000 0.00 0.00 0.00 3.77
2207 2353 3.119245 GGCTCTAATCGTACAGTGTTGGA 60.119 47.826 0.00 0.00 0.00 3.53
2208 2354 3.858238 GCTCTAATCGTACAGTGTTGGAC 59.142 47.826 0.00 0.00 34.60 4.02
2209 2355 4.617530 GCTCTAATCGTACAGTGTTGGACA 60.618 45.833 0.00 0.00 38.10 4.02
2210 2356 5.055642 TCTAATCGTACAGTGTTGGACAG 57.944 43.478 0.00 1.37 38.10 3.51
2211 2357 2.743636 ATCGTACAGTGTTGGACAGG 57.256 50.000 0.00 0.00 38.10 4.00
2212 2358 0.032952 TCGTACAGTGTTGGACAGGC 59.967 55.000 0.00 0.00 38.10 4.85
2213 2359 0.249699 CGTACAGTGTTGGACAGGCA 60.250 55.000 0.00 0.00 38.10 4.75
2214 2360 1.512926 GTACAGTGTTGGACAGGCAG 58.487 55.000 0.00 0.00 38.11 4.85
2215 2361 1.128200 TACAGTGTTGGACAGGCAGT 58.872 50.000 0.00 0.00 0.00 4.40
2216 2362 0.179045 ACAGTGTTGGACAGGCAGTC 60.179 55.000 0.74 0.74 46.83 3.51
2217 2363 0.107456 CAGTGTTGGACAGGCAGTCT 59.893 55.000 9.99 0.00 46.72 3.24
2218 2364 0.107456 AGTGTTGGACAGGCAGTCTG 59.893 55.000 9.99 0.00 46.72 3.51
2225 2371 4.459973 CAGGCAGTCTGTCGTACG 57.540 61.111 9.53 9.53 38.64 3.67
2226 2372 1.579932 CAGGCAGTCTGTCGTACGT 59.420 57.895 16.05 0.00 38.64 3.57
2227 2373 0.800631 CAGGCAGTCTGTCGTACGTA 59.199 55.000 16.05 5.01 38.64 3.57
2228 2374 1.400846 CAGGCAGTCTGTCGTACGTAT 59.599 52.381 16.05 0.00 38.64 3.06
2229 2375 2.610833 CAGGCAGTCTGTCGTACGTATA 59.389 50.000 16.05 2.04 38.64 1.47
2230 2376 2.871022 AGGCAGTCTGTCGTACGTATAG 59.129 50.000 16.05 11.79 0.00 1.31
2231 2377 2.601741 GGCAGTCTGTCGTACGTATAGC 60.602 54.545 16.05 10.93 0.00 2.97
2232 2378 2.031314 GCAGTCTGTCGTACGTATAGCA 59.969 50.000 16.05 7.04 0.00 3.49
2233 2379 3.486375 GCAGTCTGTCGTACGTATAGCAA 60.486 47.826 16.05 0.00 0.00 3.91
2234 2380 4.272480 CAGTCTGTCGTACGTATAGCAAG 58.728 47.826 16.05 4.07 0.00 4.01
2235 2381 3.311871 AGTCTGTCGTACGTATAGCAAGG 59.688 47.826 16.05 0.00 0.00 3.61
2236 2382 3.064545 GTCTGTCGTACGTATAGCAAGGT 59.935 47.826 16.05 0.00 0.00 3.50
2237 2383 3.310774 TCTGTCGTACGTATAGCAAGGTC 59.689 47.826 16.05 0.00 0.00 3.85
2238 2384 2.030823 TGTCGTACGTATAGCAAGGTCG 59.969 50.000 16.05 0.00 0.00 4.79
2239 2385 2.285220 GTCGTACGTATAGCAAGGTCGA 59.715 50.000 16.05 0.00 0.00 4.20
2240 2386 3.059325 GTCGTACGTATAGCAAGGTCGAT 60.059 47.826 16.05 0.00 0.00 3.59
2241 2387 3.561310 TCGTACGTATAGCAAGGTCGATT 59.439 43.478 16.05 0.00 0.00 3.34
2242 2388 3.904824 CGTACGTATAGCAAGGTCGATTC 59.095 47.826 7.22 0.00 0.00 2.52
2243 2389 4.319333 CGTACGTATAGCAAGGTCGATTCT 60.319 45.833 7.22 0.00 0.00 2.40
2244 2390 5.107337 CGTACGTATAGCAAGGTCGATTCTA 60.107 44.000 7.22 0.00 0.00 2.10
2245 2391 5.359716 ACGTATAGCAAGGTCGATTCTAG 57.640 43.478 0.00 0.00 0.00 2.43
2246 2392 5.061853 ACGTATAGCAAGGTCGATTCTAGA 58.938 41.667 0.00 0.00 0.00 2.43
2256 2402 4.401837 AGGTCGATTCTAGACAACTAACCC 59.598 45.833 0.00 0.00 40.20 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.565679 CGAAAACTTTGTGCACGCAC 59.434 50.000 15.20 15.20 46.33 5.34
2 3 0.448197 TCGAAAACTTTGTGCACGCA 59.552 45.000 13.13 0.00 0.00 5.24
3 4 1.447938 CATCGAAAACTTTGTGCACGC 59.552 47.619 13.13 0.00 0.00 5.34
4 5 2.980586 TCATCGAAAACTTTGTGCACG 58.019 42.857 13.13 0.00 0.00 5.34
5 6 5.694674 TTTTCATCGAAAACTTTGTGCAC 57.305 34.783 10.75 10.75 36.73 4.57
6 7 5.220117 CGTTTTTCATCGAAAACTTTGTGCA 60.220 36.000 8.39 0.00 43.77 4.57
7 8 5.003967 TCGTTTTTCATCGAAAACTTTGTGC 59.996 36.000 8.39 0.00 43.77 4.57
8 9 6.291060 CCTCGTTTTTCATCGAAAACTTTGTG 60.291 38.462 8.39 0.00 43.77 3.33
9 10 5.741982 CCTCGTTTTTCATCGAAAACTTTGT 59.258 36.000 8.39 0.00 43.77 2.83
10 11 5.741982 ACCTCGTTTTTCATCGAAAACTTTG 59.258 36.000 8.39 0.00 43.77 2.77
11 12 5.886992 ACCTCGTTTTTCATCGAAAACTTT 58.113 33.333 8.39 0.00 43.77 2.66
12 13 5.494632 ACCTCGTTTTTCATCGAAAACTT 57.505 34.783 8.39 0.00 43.77 2.66
13 14 5.494632 AACCTCGTTTTTCATCGAAAACT 57.505 34.783 8.39 0.00 43.77 2.66
14 15 6.563398 AAAACCTCGTTTTTCATCGAAAAC 57.437 33.333 1.50 0.00 42.11 2.43
25 26 3.258228 CAAGCCACAAAAACCTCGTTTT 58.742 40.909 0.00 0.00 45.94 2.43
26 27 2.232696 ACAAGCCACAAAAACCTCGTTT 59.767 40.909 0.00 0.00 37.34 3.60
27 28 1.822371 ACAAGCCACAAAAACCTCGTT 59.178 42.857 0.00 0.00 0.00 3.85
28 29 1.134175 CACAAGCCACAAAAACCTCGT 59.866 47.619 0.00 0.00 0.00 4.18
29 30 1.134175 ACACAAGCCACAAAAACCTCG 59.866 47.619 0.00 0.00 0.00 4.63
30 31 2.959507 ACACAAGCCACAAAAACCTC 57.040 45.000 0.00 0.00 0.00 3.85
31 32 4.810191 TTTACACAAGCCACAAAAACCT 57.190 36.364 0.00 0.00 0.00 3.50
32 33 5.864628 TTTTTACACAAGCCACAAAAACC 57.135 34.783 0.00 0.00 0.00 3.27
51 52 5.603596 TGAAGCATCAGCAATTGTCTTTTT 58.396 33.333 7.40 0.00 45.49 1.94
52 53 5.204409 TGAAGCATCAGCAATTGTCTTTT 57.796 34.783 7.40 0.00 45.49 2.27
53 54 4.859304 TGAAGCATCAGCAATTGTCTTT 57.141 36.364 7.40 0.00 45.49 2.52
54 55 5.401531 AATGAAGCATCAGCAATTGTCTT 57.598 34.783 7.40 1.83 45.49 3.01
55 56 6.710597 ATAATGAAGCATCAGCAATTGTCT 57.289 33.333 7.40 1.92 45.49 3.41
56 57 8.133627 AGTTATAATGAAGCATCAGCAATTGTC 58.866 33.333 7.40 0.00 45.49 3.18
57 58 8.004087 AGTTATAATGAAGCATCAGCAATTGT 57.996 30.769 7.40 0.00 45.49 2.71
61 62 9.341078 TGAATAGTTATAATGAAGCATCAGCAA 57.659 29.630 0.00 0.00 45.49 3.91
62 63 8.777413 GTGAATAGTTATAATGAAGCATCAGCA 58.223 33.333 0.00 0.00 45.49 4.41
63 64 7.954248 CGTGAATAGTTATAATGAAGCATCAGC 59.046 37.037 0.00 0.00 39.39 4.26
64 65 9.196552 TCGTGAATAGTTATAATGAAGCATCAG 57.803 33.333 0.00 0.00 39.39 2.90
65 66 9.196552 CTCGTGAATAGTTATAATGAAGCATCA 57.803 33.333 0.00 0.00 40.57 3.07
66 67 8.651588 CCTCGTGAATAGTTATAATGAAGCATC 58.348 37.037 0.00 0.00 0.00 3.91
67 68 7.118390 GCCTCGTGAATAGTTATAATGAAGCAT 59.882 37.037 0.00 0.00 0.00 3.79
68 69 6.423905 GCCTCGTGAATAGTTATAATGAAGCA 59.576 38.462 0.00 0.00 0.00 3.91
69 70 6.423905 TGCCTCGTGAATAGTTATAATGAAGC 59.576 38.462 0.00 0.00 0.00 3.86
70 71 7.946655 TGCCTCGTGAATAGTTATAATGAAG 57.053 36.000 0.00 0.00 0.00 3.02
71 72 8.902540 AATGCCTCGTGAATAGTTATAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
72 73 8.902540 AAATGCCTCGTGAATAGTTATAATGA 57.097 30.769 0.00 0.00 0.00 2.57
73 74 8.993121 AGAAATGCCTCGTGAATAGTTATAATG 58.007 33.333 0.00 0.00 0.00 1.90
74 75 9.561069 AAGAAATGCCTCGTGAATAGTTATAAT 57.439 29.630 0.00 0.00 0.00 1.28
75 76 8.958119 AAGAAATGCCTCGTGAATAGTTATAA 57.042 30.769 0.00 0.00 0.00 0.98
76 77 8.958119 AAAGAAATGCCTCGTGAATAGTTATA 57.042 30.769 0.00 0.00 0.00 0.98
77 78 7.865706 AAAGAAATGCCTCGTGAATAGTTAT 57.134 32.000 0.00 0.00 0.00 1.89
78 79 8.958119 ATAAAGAAATGCCTCGTGAATAGTTA 57.042 30.769 0.00 0.00 0.00 2.24
79 80 7.770897 AGATAAAGAAATGCCTCGTGAATAGTT 59.229 33.333 0.00 0.00 0.00 2.24
80 81 7.275920 AGATAAAGAAATGCCTCGTGAATAGT 58.724 34.615 0.00 0.00 0.00 2.12
81 82 7.721286 AGATAAAGAAATGCCTCGTGAATAG 57.279 36.000 0.00 0.00 0.00 1.73
82 83 8.506168 AAAGATAAAGAAATGCCTCGTGAATA 57.494 30.769 0.00 0.00 0.00 1.75
83 84 7.396540 AAAGATAAAGAAATGCCTCGTGAAT 57.603 32.000 0.00 0.00 0.00 2.57
84 85 6.817765 AAAGATAAAGAAATGCCTCGTGAA 57.182 33.333 0.00 0.00 0.00 3.18
85 86 6.817765 AAAAGATAAAGAAATGCCTCGTGA 57.182 33.333 0.00 0.00 0.00 4.35
124 125 5.326292 AGTTTCGATGAAAAACGACGTTTT 58.674 33.333 28.19 28.19 45.94 2.43
125 126 4.900664 AGTTTCGATGAAAAACGACGTTT 58.099 34.783 19.83 19.83 40.67 3.60
126 127 4.525411 AGTTTCGATGAAAAACGACGTT 57.475 36.364 7.57 7.57 40.67 3.99
127 128 4.525411 AAGTTTCGATGAAAAACGACGT 57.475 36.364 0.00 0.00 40.67 4.34
128 129 4.726704 ACAAAGTTTCGATGAAAAACGACG 59.273 37.500 0.00 0.00 40.67 5.12
129 130 5.551920 GCACAAAGTTTCGATGAAAAACGAC 60.552 40.000 0.00 0.00 40.67 4.34
130 131 4.497608 GCACAAAGTTTCGATGAAAAACGA 59.502 37.500 0.00 0.00 40.67 3.85
131 132 4.264145 TGCACAAAGTTTCGATGAAAAACG 59.736 37.500 0.00 0.00 40.67 3.60
132 133 5.480603 GTGCACAAAGTTTCGATGAAAAAC 58.519 37.500 13.17 0.00 33.14 2.43
133 134 4.264145 CGTGCACAAAGTTTCGATGAAAAA 59.736 37.500 18.64 0.00 33.14 1.94
134 135 3.788694 CGTGCACAAAGTTTCGATGAAAA 59.211 39.130 18.64 0.00 33.14 2.29
135 136 3.064134 TCGTGCACAAAGTTTCGATGAAA 59.936 39.130 18.64 0.00 0.00 2.69
136 137 2.609916 TCGTGCACAAAGTTTCGATGAA 59.390 40.909 18.64 0.00 0.00 2.57
137 138 2.205911 TCGTGCACAAAGTTTCGATGA 58.794 42.857 18.64 0.00 0.00 2.92
138 139 2.661504 TCGTGCACAAAGTTTCGATG 57.338 45.000 18.64 0.00 0.00 3.84
139 140 2.353269 TGTTCGTGCACAAAGTTTCGAT 59.647 40.909 18.64 0.00 0.00 3.59
140 141 1.732809 TGTTCGTGCACAAAGTTTCGA 59.267 42.857 18.64 2.29 0.00 3.71
141 142 2.166741 TGTTCGTGCACAAAGTTTCG 57.833 45.000 18.64 0.00 0.00 3.46
142 143 5.090652 TCTATGTTCGTGCACAAAGTTTC 57.909 39.130 18.64 0.00 0.00 2.78
143 144 5.493133 TTCTATGTTCGTGCACAAAGTTT 57.507 34.783 18.64 0.00 0.00 2.66
144 145 5.008613 ACATTCTATGTTCGTGCACAAAGTT 59.991 36.000 18.64 0.59 41.63 2.66
145 146 4.515191 ACATTCTATGTTCGTGCACAAAGT 59.485 37.500 18.64 1.01 41.63 2.66
146 147 5.034554 ACATTCTATGTTCGTGCACAAAG 57.965 39.130 18.64 0.04 41.63 2.77
147 148 4.083537 GGACATTCTATGTTCGTGCACAAA 60.084 41.667 18.64 0.45 45.03 2.83
148 149 3.435327 GGACATTCTATGTTCGTGCACAA 59.565 43.478 18.64 7.62 45.03 3.33
149 150 3.000041 GGACATTCTATGTTCGTGCACA 59.000 45.455 18.64 0.81 45.03 4.57
150 151 3.658351 GGACATTCTATGTTCGTGCAC 57.342 47.619 6.82 6.82 45.03 4.57
156 157 6.338937 GGGTATATCCGGACATTCTATGTTC 58.661 44.000 6.12 0.00 39.49 3.18
157 158 5.105473 CGGGTATATCCGGACATTCTATGTT 60.105 44.000 17.10 0.00 45.78 2.71
158 159 4.401519 CGGGTATATCCGGACATTCTATGT 59.598 45.833 17.10 0.00 45.78 2.29
159 160 4.933330 CGGGTATATCCGGACATTCTATG 58.067 47.826 17.10 0.00 45.78 2.23
171 172 2.484742 AAAATCCCGCGGGTATATCC 57.515 50.000 41.57 0.00 36.47 2.59
172 173 3.143728 ACAAAAATCCCGCGGGTATATC 58.856 45.455 41.57 0.00 36.47 1.63
173 174 3.217681 ACAAAAATCCCGCGGGTATAT 57.782 42.857 41.57 26.64 36.47 0.86
174 175 2.713863 ACAAAAATCCCGCGGGTATA 57.286 45.000 41.57 25.51 36.47 1.47
175 176 1.842052 AACAAAAATCCCGCGGGTAT 58.158 45.000 41.57 29.53 36.47 2.73
176 177 1.540707 GAAACAAAAATCCCGCGGGTA 59.459 47.619 41.57 28.68 36.47 3.69
177 178 0.315886 GAAACAAAAATCCCGCGGGT 59.684 50.000 41.57 26.88 36.47 5.28
178 179 0.731174 CGAAACAAAAATCCCGCGGG 60.731 55.000 39.13 39.13 0.00 6.13
179 180 0.238817 TCGAAACAAAAATCCCGCGG 59.761 50.000 21.04 21.04 0.00 6.46
180 181 2.039327 TTCGAAACAAAAATCCCGCG 57.961 45.000 0.00 0.00 0.00 6.46
181 182 4.983215 AAATTCGAAACAAAAATCCCGC 57.017 36.364 0.00 0.00 0.00 6.13
182 183 6.938542 TGAAAAATTCGAAACAAAAATCCCG 58.061 32.000 0.00 0.00 0.00 5.14
183 184 8.394877 AGTTGAAAAATTCGAAACAAAAATCCC 58.605 29.630 0.00 0.00 0.00 3.85
184 185 9.767684 AAGTTGAAAAATTCGAAACAAAAATCC 57.232 25.926 0.00 0.00 18.72 3.01
195 196 9.752274 CACATTTTGAAAAGTTGAAAAATTCGA 57.248 25.926 0.00 0.00 30.03 3.71
196 197 9.540431 ACACATTTTGAAAAGTTGAAAAATTCG 57.460 25.926 7.93 0.00 30.03 3.34
203 204 9.698309 TCTAAACACACATTTTGAAAAGTTGAA 57.302 25.926 7.93 0.00 0.00 2.69
204 205 9.134734 GTCTAAACACACATTTTGAAAAGTTGA 57.865 29.630 7.93 0.00 0.00 3.18
205 206 8.920665 TGTCTAAACACACATTTTGAAAAGTTG 58.079 29.630 0.00 0.00 0.00 3.16
206 207 9.482627 TTGTCTAAACACACATTTTGAAAAGTT 57.517 25.926 0.00 0.00 34.35 2.66
207 208 9.651913 ATTGTCTAAACACACATTTTGAAAAGT 57.348 25.926 0.00 0.00 34.35 2.66
208 209 9.904647 CATTGTCTAAACACACATTTTGAAAAG 57.095 29.630 0.00 0.00 34.35 2.27
209 210 8.877779 CCATTGTCTAAACACACATTTTGAAAA 58.122 29.630 0.00 0.00 34.35 2.29
210 211 7.493971 CCCATTGTCTAAACACACATTTTGAAA 59.506 33.333 0.00 0.00 34.35 2.69
211 212 6.983307 CCCATTGTCTAAACACACATTTTGAA 59.017 34.615 0.00 0.00 34.35 2.69
212 213 6.097554 ACCCATTGTCTAAACACACATTTTGA 59.902 34.615 0.00 0.00 34.35 2.69
213 214 6.200665 CACCCATTGTCTAAACACACATTTTG 59.799 38.462 0.00 0.00 34.35 2.44
214 215 6.279882 CACCCATTGTCTAAACACACATTTT 58.720 36.000 0.00 0.00 34.35 1.82
215 216 5.738783 GCACCCATTGTCTAAACACACATTT 60.739 40.000 0.00 0.00 34.35 2.32
216 217 4.261994 GCACCCATTGTCTAAACACACATT 60.262 41.667 0.00 0.00 34.35 2.71
217 218 3.255642 GCACCCATTGTCTAAACACACAT 59.744 43.478 0.00 0.00 34.35 3.21
218 219 2.621055 GCACCCATTGTCTAAACACACA 59.379 45.455 0.00 0.00 34.35 3.72
219 220 2.621055 TGCACCCATTGTCTAAACACAC 59.379 45.455 0.00 0.00 34.35 3.82
220 221 2.937519 TGCACCCATTGTCTAAACACA 58.062 42.857 0.00 0.00 34.35 3.72
221 222 5.581605 CATATGCACCCATTGTCTAAACAC 58.418 41.667 0.00 0.00 34.35 3.32
222 223 4.097741 GCATATGCACCCATTGTCTAAACA 59.902 41.667 22.84 0.00 41.59 2.83
223 224 4.610945 GCATATGCACCCATTGTCTAAAC 58.389 43.478 22.84 0.00 41.59 2.01
224 225 4.916983 GCATATGCACCCATTGTCTAAA 57.083 40.909 22.84 0.00 41.59 1.85
238 239 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
239 240 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
240 241 3.053693 TGTTTTGGCTCCTAGGTGCATAT 60.054 43.478 31.19 0.00 36.47 1.78
241 242 2.307392 TGTTTTGGCTCCTAGGTGCATA 59.693 45.455 31.19 19.50 36.47 3.14
242 243 1.075374 TGTTTTGGCTCCTAGGTGCAT 59.925 47.619 31.19 0.00 36.47 3.96
243 244 0.476338 TGTTTTGGCTCCTAGGTGCA 59.524 50.000 31.19 17.76 36.47 4.57
244 245 0.881796 GTGTTTTGGCTCCTAGGTGC 59.118 55.000 24.68 24.68 0.00 5.01
245 246 1.534729 GGTGTTTTGGCTCCTAGGTG 58.465 55.000 9.08 7.68 0.00 4.00
246 247 0.036306 CGGTGTTTTGGCTCCTAGGT 59.964 55.000 9.08 0.00 0.00 3.08
247 248 1.305930 GCGGTGTTTTGGCTCCTAGG 61.306 60.000 0.82 0.82 0.00 3.02
248 249 0.321653 AGCGGTGTTTTGGCTCCTAG 60.322 55.000 0.00 0.00 29.31 3.02
249 250 0.978151 TAGCGGTGTTTTGGCTCCTA 59.022 50.000 0.00 0.00 38.19 2.94
250 251 0.109723 TTAGCGGTGTTTTGGCTCCT 59.890 50.000 0.00 0.00 38.19 3.69
251 252 1.173913 ATTAGCGGTGTTTTGGCTCC 58.826 50.000 0.00 0.00 38.19 4.70
252 253 2.595386 CAATTAGCGGTGTTTTGGCTC 58.405 47.619 0.00 0.00 38.19 4.70
253 254 1.272212 CCAATTAGCGGTGTTTTGGCT 59.728 47.619 10.68 0.00 40.68 4.75
254 255 1.708822 CCAATTAGCGGTGTTTTGGC 58.291 50.000 10.68 0.00 31.29 4.52
255 256 1.272212 AGCCAATTAGCGGTGTTTTGG 59.728 47.619 16.20 16.20 39.84 3.28
256 257 2.723124 AGCCAATTAGCGGTGTTTTG 57.277 45.000 0.00 0.00 38.01 2.44
257 258 3.130340 CCATAGCCAATTAGCGGTGTTTT 59.870 43.478 0.00 0.00 38.01 2.43
258 259 2.687935 CCATAGCCAATTAGCGGTGTTT 59.312 45.455 0.00 0.00 38.01 2.83
259 260 2.297701 CCATAGCCAATTAGCGGTGTT 58.702 47.619 0.00 0.00 38.01 3.32
260 261 1.967319 CCATAGCCAATTAGCGGTGT 58.033 50.000 0.00 0.00 38.01 4.16
261 262 0.593128 GCCATAGCCAATTAGCGGTG 59.407 55.000 0.00 0.00 38.01 4.94
262 263 0.474184 AGCCATAGCCAATTAGCGGT 59.526 50.000 0.00 0.00 41.25 5.68
263 264 1.160137 GAGCCATAGCCAATTAGCGG 58.840 55.000 0.00 0.00 41.25 5.52
264 265 1.160137 GGAGCCATAGCCAATTAGCG 58.840 55.000 0.00 0.00 41.25 4.26
265 266 2.575805 AGGAGCCATAGCCAATTAGC 57.424 50.000 0.00 0.00 41.25 3.09
266 267 3.584848 ACCTAGGAGCCATAGCCAATTAG 59.415 47.826 17.98 0.00 41.25 1.73
267 268 3.327757 CACCTAGGAGCCATAGCCAATTA 59.672 47.826 17.98 0.00 41.25 1.40
268 269 2.107204 CACCTAGGAGCCATAGCCAATT 59.893 50.000 17.98 0.00 41.25 2.32
269 270 1.701847 CACCTAGGAGCCATAGCCAAT 59.298 52.381 17.98 0.00 41.25 3.16
270 271 1.131638 CACCTAGGAGCCATAGCCAA 58.868 55.000 17.98 0.00 41.25 4.52
271 272 1.410850 GCACCTAGGAGCCATAGCCA 61.411 60.000 19.57 0.00 41.25 4.75
272 273 1.373059 GCACCTAGGAGCCATAGCC 59.627 63.158 19.57 0.00 41.25 3.93
273 274 0.689623 ATGCACCTAGGAGCCATAGC 59.310 55.000 25.94 12.77 40.32 2.97
274 275 3.681034 GCATATGCACCTAGGAGCCATAG 60.681 52.174 25.94 15.31 41.59 2.23
275 276 2.237143 GCATATGCACCTAGGAGCCATA 59.763 50.000 25.94 21.43 41.59 2.74
276 277 1.004044 GCATATGCACCTAGGAGCCAT 59.996 52.381 25.94 20.24 41.59 4.40
277 278 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
278 279 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
289 290 4.916983 TTTAGACAATGGGTGCATATGC 57.083 40.909 21.09 21.09 42.50 3.14
290 291 7.013178 TGTGTATTTAGACAATGGGTGCATATG 59.987 37.037 0.00 0.00 0.00 1.78
291 292 7.059788 TGTGTATTTAGACAATGGGTGCATAT 58.940 34.615 0.00 0.00 0.00 1.78
292 293 6.418946 TGTGTATTTAGACAATGGGTGCATA 58.581 36.000 0.00 0.00 0.00 3.14
293 294 5.260424 TGTGTATTTAGACAATGGGTGCAT 58.740 37.500 0.00 0.00 0.00 3.96
294 295 4.657013 TGTGTATTTAGACAATGGGTGCA 58.343 39.130 0.00 0.00 0.00 4.57
295 296 5.835113 ATGTGTATTTAGACAATGGGTGC 57.165 39.130 0.00 0.00 32.98 5.01
296 297 8.303156 TCAAAATGTGTATTTAGACAATGGGTG 58.697 33.333 0.00 0.00 35.50 4.61
297 298 8.415950 TCAAAATGTGTATTTAGACAATGGGT 57.584 30.769 0.00 0.00 35.50 4.51
298 299 9.703892 TTTCAAAATGTGTATTTAGACAATGGG 57.296 29.630 0.00 0.00 35.50 4.00
312 313 9.838975 GGAATTTTTCAACTTTTCAAAATGTGT 57.161 25.926 0.00 0.00 30.89 3.72
313 314 8.997960 CGGAATTTTTCAACTTTTCAAAATGTG 58.002 29.630 0.00 0.00 30.89 3.21
314 315 8.940952 TCGGAATTTTTCAACTTTTCAAAATGT 58.059 25.926 0.00 0.00 30.89 2.71
315 316 9.766277 TTCGGAATTTTTCAACTTTTCAAAATG 57.234 25.926 0.00 0.00 30.89 2.32
316 317 9.767684 GTTCGGAATTTTTCAACTTTTCAAAAT 57.232 25.926 0.00 0.00 31.57 1.82
317 318 8.774586 TGTTCGGAATTTTTCAACTTTTCAAAA 58.225 25.926 0.00 0.00 0.00 2.44
318 319 8.311650 TGTTCGGAATTTTTCAACTTTTCAAA 57.688 26.923 0.00 0.00 0.00 2.69
319 320 7.891183 TGTTCGGAATTTTTCAACTTTTCAA 57.109 28.000 0.00 0.00 0.00 2.69
320 321 7.891183 TTGTTCGGAATTTTTCAACTTTTCA 57.109 28.000 0.00 0.00 0.00 2.69
321 322 9.600646 TTTTTGTTCGGAATTTTTCAACTTTTC 57.399 25.926 0.00 0.00 0.00 2.29
323 324 9.767684 GATTTTTGTTCGGAATTTTTCAACTTT 57.232 25.926 0.00 0.00 0.00 2.66
324 325 8.394877 GGATTTTTGTTCGGAATTTTTCAACTT 58.605 29.630 0.00 0.00 0.00 2.66
325 326 7.011950 GGGATTTTTGTTCGGAATTTTTCAACT 59.988 33.333 0.00 0.00 0.00 3.16
326 327 7.129622 GGGATTTTTGTTCGGAATTTTTCAAC 58.870 34.615 0.00 0.00 0.00 3.18
327 328 6.018669 CGGGATTTTTGTTCGGAATTTTTCAA 60.019 34.615 0.00 0.00 0.00 2.69
328 329 5.463724 CGGGATTTTTGTTCGGAATTTTTCA 59.536 36.000 0.00 0.00 0.00 2.69
329 330 5.613795 GCGGGATTTTTGTTCGGAATTTTTC 60.614 40.000 0.00 0.00 0.00 2.29
330 331 4.212425 GCGGGATTTTTGTTCGGAATTTTT 59.788 37.500 0.00 0.00 0.00 1.94
331 332 3.743911 GCGGGATTTTTGTTCGGAATTTT 59.256 39.130 0.00 0.00 0.00 1.82
332 333 3.322369 GCGGGATTTTTGTTCGGAATTT 58.678 40.909 0.00 0.00 0.00 1.82
333 334 2.669950 CGCGGGATTTTTGTTCGGAATT 60.670 45.455 0.00 0.00 0.00 2.17
334 335 1.135517 CGCGGGATTTTTGTTCGGAAT 60.136 47.619 0.00 0.00 0.00 3.01
335 336 0.238817 CGCGGGATTTTTGTTCGGAA 59.761 50.000 0.00 0.00 0.00 4.30
336 337 1.579084 CCGCGGGATTTTTGTTCGGA 61.579 55.000 20.10 0.00 37.79 4.55
337 338 1.154112 CCGCGGGATTTTTGTTCGG 60.154 57.895 20.10 0.00 0.00 4.30
338 339 1.154112 CCCGCGGGATTTTTGTTCG 60.154 57.895 41.82 6.81 37.50 3.95
339 340 4.880899 CCCGCGGGATTTTTGTTC 57.119 55.556 41.82 0.00 37.50 3.18
351 352 8.763084 ACATAGAATGTTCGGATATACCCGCG 62.763 46.154 0.00 0.00 41.63 6.46
352 353 5.623824 ACATAGAATGTTCGGATATACCCGC 60.624 44.000 0.00 0.00 41.63 6.13
353 354 5.805486 CACATAGAATGTTCGGATATACCCG 59.195 44.000 0.00 0.00 45.64 5.28
354 355 5.581085 GCACATAGAATGTTCGGATATACCC 59.419 44.000 0.00 0.00 42.70 3.69
355 356 5.288712 CGCACATAGAATGTTCGGATATACC 59.711 44.000 4.50 0.00 44.20 2.73
356 357 6.319229 CGCACATAGAATGTTCGGATATAC 57.681 41.667 4.50 0.00 44.20 1.47
364 365 2.774007 GTGCACGCACATAGAATGTTC 58.226 47.619 17.03 0.00 45.53 3.18
365 366 2.900122 GTGCACGCACATAGAATGTT 57.100 45.000 17.03 0.00 45.53 2.71
375 376 0.565679 CGAAAACTTTGTGCACGCAC 59.434 50.000 15.20 15.20 46.33 5.34
376 377 0.448197 TCGAAAACTTTGTGCACGCA 59.552 45.000 13.13 0.00 0.00 5.24
377 378 1.447938 CATCGAAAACTTTGTGCACGC 59.552 47.619 13.13 0.00 0.00 5.34
378 379 2.980586 TCATCGAAAACTTTGTGCACG 58.019 42.857 13.13 0.00 0.00 5.34
379 380 4.851558 GGTATCATCGAAAACTTTGTGCAC 59.148 41.667 10.75 10.75 0.00 4.57
380 381 4.759693 AGGTATCATCGAAAACTTTGTGCA 59.240 37.500 0.00 0.00 0.00 4.57
381 382 5.296813 AGGTATCATCGAAAACTTTGTGC 57.703 39.130 0.00 0.00 0.00 4.57
382 383 6.898041 TGAAGGTATCATCGAAAACTTTGTG 58.102 36.000 0.00 0.00 31.50 3.33
383 384 7.504924 TTGAAGGTATCATCGAAAACTTTGT 57.495 32.000 0.00 0.00 38.03 2.83
384 385 7.059488 CGTTTGAAGGTATCATCGAAAACTTTG 59.941 37.037 0.00 0.00 38.03 2.77
385 386 7.075741 CGTTTGAAGGTATCATCGAAAACTTT 58.924 34.615 0.00 0.00 38.03 2.66
386 387 6.348213 CCGTTTGAAGGTATCATCGAAAACTT 60.348 38.462 0.00 0.00 38.03 2.66
387 388 5.121768 CCGTTTGAAGGTATCATCGAAAACT 59.878 40.000 0.00 0.00 38.03 2.66
388 389 5.321516 CCGTTTGAAGGTATCATCGAAAAC 58.678 41.667 0.00 0.00 38.03 2.43
389 390 4.142773 GCCGTTTGAAGGTATCATCGAAAA 60.143 41.667 0.00 0.00 38.03 2.29
390 391 3.372822 GCCGTTTGAAGGTATCATCGAAA 59.627 43.478 0.00 0.00 38.03 3.46
391 392 2.933906 GCCGTTTGAAGGTATCATCGAA 59.066 45.455 0.00 0.00 38.03 3.71
392 393 2.093921 TGCCGTTTGAAGGTATCATCGA 60.094 45.455 0.00 0.00 38.03 3.59
393 394 2.276201 TGCCGTTTGAAGGTATCATCG 58.724 47.619 0.00 0.00 38.03 3.84
394 395 4.900635 AATGCCGTTTGAAGGTATCATC 57.099 40.909 0.00 0.00 38.03 2.92
395 396 4.097892 GGAAATGCCGTTTGAAGGTATCAT 59.902 41.667 0.00 0.00 38.03 2.45
396 397 3.442273 GGAAATGCCGTTTGAAGGTATCA 59.558 43.478 0.00 0.00 32.88 2.15
397 398 3.181490 GGGAAATGCCGTTTGAAGGTATC 60.181 47.826 0.00 0.00 37.63 2.24
405 406 1.591183 CTGGGGGAAATGCCGTTTG 59.409 57.895 0.00 0.00 37.63 2.93
417 418 4.051167 TGACATGGCTGCTGGGGG 62.051 66.667 0.00 0.00 0.00 5.40
450 457 1.272147 GGTGATCTGAAACCCCAGCTT 60.272 52.381 0.00 0.00 34.28 3.74
894 914 1.391157 GGTGCTTGCCTTGGTGTTGA 61.391 55.000 0.00 0.00 0.00 3.18
942 963 6.227298 TGTAGGAGATGGAAGAAGCTAAAG 57.773 41.667 0.00 0.00 0.00 1.85
944 965 6.839134 TGTATGTAGGAGATGGAAGAAGCTAA 59.161 38.462 0.00 0.00 0.00 3.09
956 977 5.420421 CGGAATGGATCTGTATGTAGGAGAT 59.580 44.000 0.00 0.00 0.00 2.75
1113 1134 1.293498 GGAAGCAGAAGCAGACGGA 59.707 57.895 0.00 0.00 45.49 4.69
1173 1194 4.814294 ATCGGCGACCCTGCGAAC 62.814 66.667 13.76 0.00 35.06 3.95
1546 1568 6.874278 AAAAGGATTTAAAGCAAGGCCTAT 57.126 33.333 5.16 0.00 37.28 2.57
1558 1580 8.893563 ACATCAGGGTATGAAAAAGGATTTAA 57.106 30.769 0.00 0.00 42.53 1.52
1559 1581 8.336235 AGACATCAGGGTATGAAAAAGGATTTA 58.664 33.333 0.00 0.00 42.53 1.40
1571 1596 4.694760 TGATTCCAGACATCAGGGTATG 57.305 45.455 0.00 0.00 0.00 2.39
1572 1597 4.042560 CCATGATTCCAGACATCAGGGTAT 59.957 45.833 5.60 0.00 44.29 2.73
1573 1598 3.392285 CCATGATTCCAGACATCAGGGTA 59.608 47.826 5.60 0.00 44.29 3.69
1574 1599 2.174210 CCATGATTCCAGACATCAGGGT 59.826 50.000 5.60 0.00 44.29 4.34
1575 1600 2.860009 CCATGATTCCAGACATCAGGG 58.140 52.381 0.00 0.00 44.01 4.45
1604 1635 7.269316 TGCATCATTCACTCATGCATTTAATT 58.731 30.769 0.00 0.00 46.22 1.40
1730 1767 9.384764 GAAGCAACATATCTTTTAGGTTCTACT 57.615 33.333 0.00 0.00 0.00 2.57
1731 1768 9.384764 AGAAGCAACATATCTTTTAGGTTCTAC 57.615 33.333 0.00 0.00 39.62 2.59
1765 1907 4.275810 AGATCACATGCCTGCATTAACTT 58.724 39.130 0.97 0.00 33.90 2.66
1884 2026 9.294030 CAAATACTCCAAATGCTTCTGATAAAC 57.706 33.333 0.00 0.00 0.00 2.01
2083 2229 2.937591 TCGTACGTAGAGCAGTTTTGG 58.062 47.619 16.05 0.00 0.00 3.28
2084 2230 4.163552 TCATCGTACGTAGAGCAGTTTTG 58.836 43.478 16.05 0.00 0.00 2.44
2085 2231 4.430137 TCATCGTACGTAGAGCAGTTTT 57.570 40.909 16.05 0.00 0.00 2.43
2086 2232 4.634184 ATCATCGTACGTAGAGCAGTTT 57.366 40.909 16.05 0.00 0.00 2.66
2087 2233 4.634184 AATCATCGTACGTAGAGCAGTT 57.366 40.909 16.05 3.29 0.00 3.16
2088 2234 4.634184 AAATCATCGTACGTAGAGCAGT 57.366 40.909 16.05 0.00 0.00 4.40
2089 2235 4.441415 GGAAAATCATCGTACGTAGAGCAG 59.559 45.833 16.05 0.00 0.00 4.24
2090 2236 4.357142 GGAAAATCATCGTACGTAGAGCA 58.643 43.478 16.05 0.00 0.00 4.26
2091 2237 3.734735 GGGAAAATCATCGTACGTAGAGC 59.265 47.826 16.05 5.85 0.00 4.09
2092 2238 4.928601 TGGGAAAATCATCGTACGTAGAG 58.071 43.478 16.05 4.06 0.00 2.43
2093 2239 4.987408 TGGGAAAATCATCGTACGTAGA 57.013 40.909 16.05 14.32 0.00 2.59
2094 2240 4.684703 GGATGGGAAAATCATCGTACGTAG 59.315 45.833 16.05 9.17 41.24 3.51
2095 2241 4.624015 GGATGGGAAAATCATCGTACGTA 58.376 43.478 16.05 2.34 41.24 3.57
2096 2242 3.463944 GGATGGGAAAATCATCGTACGT 58.536 45.455 16.05 0.00 41.24 3.57
2097 2243 2.475111 CGGATGGGAAAATCATCGTACG 59.525 50.000 9.53 9.53 41.24 3.67
2098 2244 3.493503 GTCGGATGGGAAAATCATCGTAC 59.506 47.826 0.00 0.00 41.24 3.67
2099 2245 3.493699 GGTCGGATGGGAAAATCATCGTA 60.494 47.826 0.00 0.00 41.24 3.43
2100 2246 2.561569 GTCGGATGGGAAAATCATCGT 58.438 47.619 0.00 0.00 41.24 3.73
2101 2247 1.873591 GGTCGGATGGGAAAATCATCG 59.126 52.381 0.00 0.00 41.24 3.84
2102 2248 2.230660 GGGTCGGATGGGAAAATCATC 58.769 52.381 0.00 0.00 40.02 2.92
2103 2249 1.476833 CGGGTCGGATGGGAAAATCAT 60.477 52.381 0.00 0.00 0.00 2.45
2104 2250 0.107410 CGGGTCGGATGGGAAAATCA 60.107 55.000 0.00 0.00 0.00 2.57
2105 2251 0.107361 ACGGGTCGGATGGGAAAATC 60.107 55.000 0.00 0.00 0.00 2.17
2106 2252 1.134310 GTACGGGTCGGATGGGAAAAT 60.134 52.381 0.00 0.00 0.00 1.82
2107 2253 0.249955 GTACGGGTCGGATGGGAAAA 59.750 55.000 0.00 0.00 0.00 2.29
2108 2254 1.899617 GTACGGGTCGGATGGGAAA 59.100 57.895 0.00 0.00 0.00 3.13
2109 2255 2.417257 CGTACGGGTCGGATGGGAA 61.417 63.158 7.57 0.00 0.00 3.97
2110 2256 2.829914 CGTACGGGTCGGATGGGA 60.830 66.667 7.57 0.00 0.00 4.37
2111 2257 2.829914 TCGTACGGGTCGGATGGG 60.830 66.667 16.52 0.00 0.00 4.00
2112 2258 2.410469 GTCGTACGGGTCGGATGG 59.590 66.667 16.52 0.00 0.00 3.51
2113 2259 2.332362 CTGGTCGTACGGGTCGGATG 62.332 65.000 16.52 0.00 0.00 3.51
2114 2260 2.045045 TGGTCGTACGGGTCGGAT 60.045 61.111 16.52 0.00 0.00 4.18
2115 2261 2.747460 CTGGTCGTACGGGTCGGA 60.747 66.667 16.52 0.00 0.00 4.55
2116 2262 2.747460 TCTGGTCGTACGGGTCGG 60.747 66.667 16.52 10.22 0.00 4.79
2117 2263 1.703438 CTCTCTGGTCGTACGGGTCG 61.703 65.000 16.52 2.41 0.00 4.79
2118 2264 1.991099 GCTCTCTGGTCGTACGGGTC 61.991 65.000 16.52 6.46 0.00 4.46
2119 2265 2.045131 GCTCTCTGGTCGTACGGGT 61.045 63.158 16.52 0.00 0.00 5.28
2120 2266 1.592400 TTGCTCTCTGGTCGTACGGG 61.592 60.000 16.52 3.93 0.00 5.28
2121 2267 0.456312 GTTGCTCTCTGGTCGTACGG 60.456 60.000 16.52 0.00 0.00 4.02
2122 2268 0.793478 CGTTGCTCTCTGGTCGTACG 60.793 60.000 9.53 9.53 0.00 3.67
2123 2269 0.520404 TCGTTGCTCTCTGGTCGTAC 59.480 55.000 0.00 0.00 0.00 3.67
2124 2270 1.400846 GATCGTTGCTCTCTGGTCGTA 59.599 52.381 0.00 0.00 0.00 3.43
2125 2271 0.171455 GATCGTTGCTCTCTGGTCGT 59.829 55.000 0.00 0.00 0.00 4.34
2126 2272 0.453793 AGATCGTTGCTCTCTGGTCG 59.546 55.000 0.00 0.00 0.00 4.79
2127 2273 1.748493 AGAGATCGTTGCTCTCTGGTC 59.252 52.381 1.86 0.00 45.97 4.02
2128 2274 1.846007 AGAGATCGTTGCTCTCTGGT 58.154 50.000 1.86 0.00 45.97 4.00
2129 2275 3.380004 AGTTAGAGATCGTTGCTCTCTGG 59.620 47.826 11.61 0.00 46.84 3.86
2130 2276 4.630894 AGTTAGAGATCGTTGCTCTCTG 57.369 45.455 11.61 0.00 46.84 3.35
2132 2278 5.744666 AGTAGTTAGAGATCGTTGCTCTC 57.255 43.478 7.51 4.06 41.58 3.20
2133 2279 6.205853 CCATAGTAGTTAGAGATCGTTGCTCT 59.794 42.308 0.00 0.00 44.46 4.09
2134 2280 6.375377 CCATAGTAGTTAGAGATCGTTGCTC 58.625 44.000 0.00 0.00 0.00 4.26
2135 2281 5.278561 GCCATAGTAGTTAGAGATCGTTGCT 60.279 44.000 0.00 0.00 0.00 3.91
2136 2282 4.918583 GCCATAGTAGTTAGAGATCGTTGC 59.081 45.833 0.00 0.00 0.00 4.17
2137 2283 5.462405 GGCCATAGTAGTTAGAGATCGTTG 58.538 45.833 0.00 0.00 0.00 4.10
2138 2284 4.523558 GGGCCATAGTAGTTAGAGATCGTT 59.476 45.833 4.39 0.00 0.00 3.85
2139 2285 4.080687 GGGCCATAGTAGTTAGAGATCGT 58.919 47.826 4.39 0.00 0.00 3.73
2140 2286 4.079970 TGGGCCATAGTAGTTAGAGATCG 58.920 47.826 0.00 0.00 0.00 3.69
2141 2287 4.833380 TGTGGGCCATAGTAGTTAGAGATC 59.167 45.833 10.70 0.00 0.00 2.75
2142 2288 4.816126 TGTGGGCCATAGTAGTTAGAGAT 58.184 43.478 10.70 0.00 0.00 2.75
2143 2289 4.259933 TGTGGGCCATAGTAGTTAGAGA 57.740 45.455 10.70 0.00 0.00 3.10
2144 2290 5.104900 AGTTTGTGGGCCATAGTAGTTAGAG 60.105 44.000 10.70 0.00 0.00 2.43
2145 2291 4.781087 AGTTTGTGGGCCATAGTAGTTAGA 59.219 41.667 10.70 0.00 0.00 2.10
2146 2292 4.876107 CAGTTTGTGGGCCATAGTAGTTAG 59.124 45.833 10.70 0.00 0.00 2.34
2147 2293 4.532916 TCAGTTTGTGGGCCATAGTAGTTA 59.467 41.667 10.70 0.00 0.00 2.24
2148 2294 3.329520 TCAGTTTGTGGGCCATAGTAGTT 59.670 43.478 10.70 0.00 0.00 2.24
2149 2295 2.910319 TCAGTTTGTGGGCCATAGTAGT 59.090 45.455 10.70 0.00 0.00 2.73
2150 2296 3.627395 TCAGTTTGTGGGCCATAGTAG 57.373 47.619 10.70 0.00 0.00 2.57
2151 2297 4.584638 ATTCAGTTTGTGGGCCATAGTA 57.415 40.909 10.70 0.00 0.00 1.82
2152 2298 2.969821 TTCAGTTTGTGGGCCATAGT 57.030 45.000 10.70 0.00 0.00 2.12
2153 2299 5.360714 ACATAATTCAGTTTGTGGGCCATAG 59.639 40.000 10.70 0.00 0.00 2.23
2154 2300 5.268387 ACATAATTCAGTTTGTGGGCCATA 58.732 37.500 10.70 3.21 0.00 2.74
2155 2301 4.095946 ACATAATTCAGTTTGTGGGCCAT 58.904 39.130 10.70 0.00 0.00 4.40
2156 2302 3.505386 ACATAATTCAGTTTGTGGGCCA 58.495 40.909 0.00 0.00 0.00 5.36
2157 2303 5.359576 TCATACATAATTCAGTTTGTGGGCC 59.640 40.000 0.00 0.00 0.00 5.80
2158 2304 6.449635 TCATACATAATTCAGTTTGTGGGC 57.550 37.500 0.00 0.00 0.00 5.36
2159 2305 9.304731 CAAATCATACATAATTCAGTTTGTGGG 57.695 33.333 0.00 0.00 0.00 4.61
2160 2306 9.304731 CCAAATCATACATAATTCAGTTTGTGG 57.695 33.333 0.00 0.00 0.00 4.17
2161 2307 8.810427 GCCAAATCATACATAATTCAGTTTGTG 58.190 33.333 0.00 0.00 0.00 3.33
2162 2308 8.752187 AGCCAAATCATACATAATTCAGTTTGT 58.248 29.630 0.00 0.00 0.00 2.83
2163 2309 9.241317 GAGCCAAATCATACATAATTCAGTTTG 57.759 33.333 0.00 0.00 0.00 2.93
2164 2310 9.193806 AGAGCCAAATCATACATAATTCAGTTT 57.806 29.630 0.00 0.00 0.00 2.66
2165 2311 8.757982 AGAGCCAAATCATACATAATTCAGTT 57.242 30.769 0.00 0.00 0.00 3.16
2166 2312 9.851686 TTAGAGCCAAATCATACATAATTCAGT 57.148 29.630 0.00 0.00 0.00 3.41
2169 2315 9.979270 CGATTAGAGCCAAATCATACATAATTC 57.021 33.333 4.69 0.00 33.75 2.17
2170 2316 9.507329 ACGATTAGAGCCAAATCATACATAATT 57.493 29.630 0.00 0.00 33.75 1.40
2172 2318 9.419297 GTACGATTAGAGCCAAATCATACATAA 57.581 33.333 0.00 0.00 34.05 1.90
2173 2319 8.581578 TGTACGATTAGAGCCAAATCATACATA 58.418 33.333 7.64 0.00 37.20 2.29
2174 2320 7.441836 TGTACGATTAGAGCCAAATCATACAT 58.558 34.615 7.64 0.00 37.20 2.29
2175 2321 6.811954 TGTACGATTAGAGCCAAATCATACA 58.188 36.000 7.64 7.64 38.79 2.29
2176 2322 6.924060 ACTGTACGATTAGAGCCAAATCATAC 59.076 38.462 0.00 3.77 34.32 2.39
2177 2323 6.923508 CACTGTACGATTAGAGCCAAATCATA 59.076 38.462 0.00 0.00 33.75 2.15
2178 2324 5.755375 CACTGTACGATTAGAGCCAAATCAT 59.245 40.000 0.00 0.00 33.75 2.45
2179 2325 5.109210 CACTGTACGATTAGAGCCAAATCA 58.891 41.667 0.00 0.00 33.75 2.57
2180 2326 5.109903 ACACTGTACGATTAGAGCCAAATC 58.890 41.667 0.00 0.00 0.00 2.17
2181 2327 5.086104 ACACTGTACGATTAGAGCCAAAT 57.914 39.130 0.00 0.00 0.00 2.32
2182 2328 4.530710 ACACTGTACGATTAGAGCCAAA 57.469 40.909 0.00 0.00 0.00 3.28
2183 2329 4.242475 CAACACTGTACGATTAGAGCCAA 58.758 43.478 0.00 0.00 0.00 4.52
2184 2330 3.368013 CCAACACTGTACGATTAGAGCCA 60.368 47.826 0.00 0.00 0.00 4.75
2185 2331 3.119245 TCCAACACTGTACGATTAGAGCC 60.119 47.826 0.00 0.00 0.00 4.70
2186 2332 3.858238 GTCCAACACTGTACGATTAGAGC 59.142 47.826 0.00 0.00 0.00 4.09
2187 2333 5.055642 TGTCCAACACTGTACGATTAGAG 57.944 43.478 0.00 0.00 0.00 2.43
2188 2334 4.082408 CCTGTCCAACACTGTACGATTAGA 60.082 45.833 0.00 0.00 0.00 2.10
2189 2335 4.174009 CCTGTCCAACACTGTACGATTAG 58.826 47.826 0.00 0.00 0.00 1.73
2190 2336 3.615592 GCCTGTCCAACACTGTACGATTA 60.616 47.826 0.00 0.00 0.00 1.75
2191 2337 2.870435 GCCTGTCCAACACTGTACGATT 60.870 50.000 0.00 0.00 0.00 3.34
2192 2338 1.337823 GCCTGTCCAACACTGTACGAT 60.338 52.381 0.00 0.00 0.00 3.73
2193 2339 0.032952 GCCTGTCCAACACTGTACGA 59.967 55.000 0.00 0.00 0.00 3.43
2194 2340 0.249699 TGCCTGTCCAACACTGTACG 60.250 55.000 0.00 0.00 0.00 3.67
2195 2341 1.202651 ACTGCCTGTCCAACACTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
2196 2342 1.070134 GACTGCCTGTCCAACACTGTA 59.930 52.381 0.00 0.00 39.69 2.74
2197 2343 0.179045 GACTGCCTGTCCAACACTGT 60.179 55.000 0.00 0.00 39.69 3.55
2198 2344 0.107456 AGACTGCCTGTCCAACACTG 59.893 55.000 0.00 0.00 46.46 3.66
2199 2345 0.107456 CAGACTGCCTGTCCAACACT 59.893 55.000 0.00 0.00 46.46 3.55
2200 2346 2.621763 CAGACTGCCTGTCCAACAC 58.378 57.895 0.00 0.00 46.46 3.32
2209 2355 1.747709 ATACGTACGACAGACTGCCT 58.252 50.000 24.41 0.00 0.00 4.75
2210 2356 2.601741 GCTATACGTACGACAGACTGCC 60.602 54.545 24.41 0.00 0.00 4.85
2211 2357 2.031314 TGCTATACGTACGACAGACTGC 59.969 50.000 24.41 15.49 0.00 4.40
2212 2358 3.938778 TGCTATACGTACGACAGACTG 57.061 47.619 24.41 0.00 0.00 3.51
2213 2359 3.311871 CCTTGCTATACGTACGACAGACT 59.688 47.826 24.41 0.00 0.00 3.24
2214 2360 3.064545 ACCTTGCTATACGTACGACAGAC 59.935 47.826 24.41 8.74 0.00 3.51
2215 2361 3.273434 ACCTTGCTATACGTACGACAGA 58.727 45.455 24.41 5.53 0.00 3.41
2216 2362 3.615614 GACCTTGCTATACGTACGACAG 58.384 50.000 24.41 15.60 0.00 3.51
2217 2363 2.030823 CGACCTTGCTATACGTACGACA 59.969 50.000 24.41 9.64 0.00 4.35
2218 2364 2.285220 TCGACCTTGCTATACGTACGAC 59.715 50.000 24.41 6.19 0.00 4.34
2219 2365 2.549926 TCGACCTTGCTATACGTACGA 58.450 47.619 24.41 6.04 0.00 3.43
2220 2366 3.532892 ATCGACCTTGCTATACGTACG 57.467 47.619 15.01 15.01 0.00 3.67
2221 2367 5.105834 AGAATCGACCTTGCTATACGTAC 57.894 43.478 0.00 0.00 0.00 3.67
2222 2368 6.146837 GTCTAGAATCGACCTTGCTATACGTA 59.853 42.308 0.00 0.00 0.00 3.57
2223 2369 5.049543 GTCTAGAATCGACCTTGCTATACGT 60.050 44.000 0.00 0.00 0.00 3.57
2224 2370 5.049612 TGTCTAGAATCGACCTTGCTATACG 60.050 44.000 0.00 0.00 0.00 3.06
2225 2371 6.315091 TGTCTAGAATCGACCTTGCTATAC 57.685 41.667 0.00 0.00 0.00 1.47
2226 2372 6.546403 AGTTGTCTAGAATCGACCTTGCTATA 59.454 38.462 0.00 0.00 0.00 1.31
2227 2373 5.361285 AGTTGTCTAGAATCGACCTTGCTAT 59.639 40.000 0.00 0.00 0.00 2.97
2228 2374 4.705507 AGTTGTCTAGAATCGACCTTGCTA 59.294 41.667 0.00 0.00 0.00 3.49
2229 2375 3.511934 AGTTGTCTAGAATCGACCTTGCT 59.488 43.478 0.00 0.00 0.00 3.91
2230 2376 3.851098 AGTTGTCTAGAATCGACCTTGC 58.149 45.455 0.00 0.00 0.00 4.01
2231 2377 5.805994 GGTTAGTTGTCTAGAATCGACCTTG 59.194 44.000 0.00 0.00 0.00 3.61
2232 2378 5.105432 GGGTTAGTTGTCTAGAATCGACCTT 60.105 44.000 0.00 0.00 0.00 3.50
2233 2379 4.401837 GGGTTAGTTGTCTAGAATCGACCT 59.598 45.833 0.00 0.00 0.00 3.85
2234 2380 4.159135 TGGGTTAGTTGTCTAGAATCGACC 59.841 45.833 0.00 0.00 0.00 4.79
2235 2381 5.100943 GTGGGTTAGTTGTCTAGAATCGAC 58.899 45.833 0.00 0.00 0.00 4.20
2236 2382 4.159135 GGTGGGTTAGTTGTCTAGAATCGA 59.841 45.833 0.00 0.00 0.00 3.59
2237 2383 4.159879 AGGTGGGTTAGTTGTCTAGAATCG 59.840 45.833 0.00 0.00 0.00 3.34
2238 2384 5.678955 AGGTGGGTTAGTTGTCTAGAATC 57.321 43.478 0.00 0.00 0.00 2.52
2239 2385 5.128991 GCTAGGTGGGTTAGTTGTCTAGAAT 59.871 44.000 0.00 0.00 0.00 2.40
2240 2386 4.465305 GCTAGGTGGGTTAGTTGTCTAGAA 59.535 45.833 0.00 0.00 0.00 2.10
2241 2387 4.021916 GCTAGGTGGGTTAGTTGTCTAGA 58.978 47.826 0.00 0.00 0.00 2.43
2242 2388 4.024670 AGCTAGGTGGGTTAGTTGTCTAG 58.975 47.826 0.00 0.00 0.00 2.43
2243 2389 4.057063 AGCTAGGTGGGTTAGTTGTCTA 57.943 45.455 0.00 0.00 0.00 2.59
2244 2390 2.903926 AGCTAGGTGGGTTAGTTGTCT 58.096 47.619 0.00 0.00 0.00 3.41
2245 2391 3.768215 ACTAGCTAGGTGGGTTAGTTGTC 59.232 47.826 24.35 0.00 28.87 3.18
2246 2392 3.787742 ACTAGCTAGGTGGGTTAGTTGT 58.212 45.455 24.35 0.00 28.87 3.32
2256 2402 4.180057 CAGAAAGCAGAACTAGCTAGGTG 58.820 47.826 24.35 18.03 42.53 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.