>input_sequence_83048
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------------------------------------------------------------ATGCCTCGGCTGCTCCTCTT
GTGCCTGGTGTCTAGCCATTTCGCGGTGACCGCCGTCATGGCGCGGCAGTTCCCCGTCTTCCTCGTCGACGGCGGCGCCA
TGGCAGCAGACGCTCCGTCTGCTTCTGCTTCCGACGCTTCGCGTCTGCATAGGCACTCCCTTTTGGAGTCCAGGTTCGCA
GGGTCGCCGATGGGCTCGTCTGACCACGGACTACGGCACGGCCCCTTCGACAGGCACTTCGCCGGGGGCAAGATCATACT
CGGCGGCCTCGCGGTGGCGATCATCGCCGCGGTCTTCTGCTACATCCGCATCACCAGGGCCAAGAAGATCGTCGAGCCAA
AAACTTAG------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G218300
TGTGCGTGCACAAAGTTTTCGATGAAAAACGAGGTTTTTGTGGCTTGTGTAAAAAAGACAATTGCTGATGCTTCATTATA
ACTATTCACGAGGCATTTCTTTATCTTTTTTACACAAGCCACAAAAAACGTCGTTTTTCATCGAAACTTTGTGCACGAAC
ATAGAATGTCCGGATATACCCGCGGGATTTTTGTTTCGAATTTTTCAACTTTTCAAAATGTGTGTTTAGACAATGGGTGC
ATATGCACCTAGGAGCCAAAACACCGCTAATTGGCTATGGCTCCTAGGTGCATATGCACCCATTGTCTAAATACACATTT
TGAAAAGTTGAAAAATTCCGAACAAAAATCCCGCGGGTATATCCGAACATTCTATGTGCGTGCACAAAGTTTTCGATGAT
ACCTTCAAACGGCATTTCCCCC------AGCAGCCATGTCAGAGCTCCAGGTCTGCAAGCTGGGGTTTCAGATCACCTTC
CAAGAACCTGCCCCCAAAACCATGTCAACAAACTGCGGAACACAAGGCCCTGCACCTGCATGCTGCTCCGTCCAAGACCT
-----CCCCTTCTCTTCTCCCTGGATGCAGCTGTAAGCTGACTTGCCCGCATGCTGACTTTTTCTGCAACATTCAGAGAG
ATTCTCCATCCAGAATTCCAGATGTCAGTTGCTCATCGCACCCACGCCCAATGATTCCTAGAACAGCAGAACTCACCACC
CTCCAATCATTTTCTAAGAGCCACCAGCCACGCGACTGACATTTCCCCCCAGCAAATCAAGATCCGTAAAGAGTGGGCGC
GCGCATGCACGCGAGTC---ACAAATATCA-----AACTGAACTGAACCGGAGAACGGCACAGCCAGGCCGTCTCCTATA
TAAGAGCCCCTCCTGGCCGTCATCTTCTGCACATCAACACCAAGGCAAGCACCAAGTCTACTCCTCCGCAGCTA-GCTCT
AGCTTTAGCTTCTTCCATCTCCTACATACAGATCCATTCCGTGGATCGATCTCTCCAACGATGCCTCGGCTGCTCCTCTT
GTGCCTGGTGTCTAGCCATTTCGCGGTGACCGCCGTCATGGCGCGGCAGTTCCCCGTCTTCCTCGTCGACGGCGGCGCCA
TGGCAGCAGACGCTCCGTCTGCTTCTGCTTCCGACGCTTCGCGTCTGCATAGGCACTCCCTTTTGGAGTCCAGGTTCGCA
GGGTCGCCGATGGGCTCGTCTGACCACGGACTACGGCACGGCCCCTTCGACAGGCACTTCGCCGGGGGCAAGATCATACT
CGGCGGCCTCGCGGTGGCGATCATCGCCGCGGTCTTCTGCTACATCCGCATCACCAGGGCCAAGAAGATCGTCGAGCCAA
AAACTTAGACTTCTTTCTCTTCCCTGGTTAATATCATACCTTGAACACTTCTTTTTCGTCTTTCTTTGTAGCGAGGACAT
GACATGGGGGAAAAAACAAATGTAACCCACGTAGATTT-GTTGTAACATGCAAAGAACAGTTAATTACTGGCGATGACTG
ATGACACAGCGTGATTCGTCTCCTTTCTTGCAGGTCCAGTGTGCTGTATAGGCCTTGCTTTA---AATCCTTTTTCATAC
C------CTGATGTCTGGAATCATGGTGTGCTTGAATTAAATGCATGAGTGAATGATGCATGTCAAGTTATTATCATTGC
ATGGTTA---AGTAGTAGTAGTACTCTTTGGGTTGAG---TACTTTATAAAGGGCCTATAGTTGGACGGTGATGAGTTGC
CGTCCTAGTAGAACCTAAAAGATATGTTGCTTCTGATC------------------------------------------
---------------------------------------------------------------TAGAAGTTAATGCAGGC
ATGTGATCTTTTTATCAGTTGCCCCTGAAAAATTAGCTATCTATTAGAAAACCCTAAACTTCAGCTAAACCCGGTTTAAA
TATTAATACTAGTAATTTGAACTCCGTTTATCAGAAGCATTTGGAGTATTTGTCTAAGAAACTAGCAAATCAGATTTGTG
TCTGCTATT----ATCTAACTTTGCTCCATTATAGGCAGATAGCACCACTTAATTATCAGTAAGGAAAAGGTGGCACCAG
AGTTGCAGGATCTGGATGGAGTACCACACATCGATCTGTTCAGCTACAACATGTGCAATAATTCTAGACCAAAACTGCTC
TACGTACGATGATTTTCCCATCCGACCCGTACGACCAGAGAGCAACGATCTCTAACTACTATGGCCCACAAACTGAATTA
TGTATGATTTGGCTCTAATCGTACAGTGTTGGACAGGCAGTCTGTCGTACGTATAGCAAGGTCGATTCTAGACAACTAAC
CCACCTAGCTAGTTCTGCTTTCTGGTAACGAGGAGAAGATGGACTGACTCGATCAAAATGCTAGCACGGTTGCTTTTTAG
TATCTTCTTAACC
>chr2A_399
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------------------------------------------------------------------------------AT
ACCTTTAAACGGCATTTGCCCCCTATTTAGCAGCCATGTCAGAGCTCCAGGTCTGCGAGCTGGGGTTTCAGATCACCTTC
CAAGAACCTGCCCCCAAAACCATGTCAACAAACTGCGGAACACAAGGCCCTGCACCTGCATGCTGCTCCGTCCAAGACCT
GGACTCCCCTTCTCTTCTCCCTGGATGCAGCTGTAAGCTGACTTGCCCGCATGCTGACTTTTTCTGCAACATTCAGAGAG
ATTCTCCATCCAGAATTCCAGATGTCAGTTGCTCATCGCACCCACGCCCAATGATTCCTAGAACACCAGAACTCACCACC
CTCCAATCATTTTCTAAGAGCCACCAGCCACGCGACTGACATTTCCCCCCAGCAAATCAAGATCCGTTAAGAGTGGGCGC
GCGCATGCACGCGAGTCGTCACAAATATCGAACTGAACTGAACTTAACCGGAGAACGGCACAGCCAGGCCGTCTCCTATA
TAAGAGCCCCTCCTGTCCGTCATCTTCTGCACACCAACACCAAGGCAAGCATCAAGTCCACTCCTCCACAGCTAAGCTCT
AGTTCTAGCTTCTTCCGTCTCCTACATACAGATCCATTCCGTGGATCGATCTGTCCAACGATGCCTCGGCTGCTCCTCTT
GTGCCTGGTGTCTAGCCATTTCGCGGTGACCGCCGTCATGGCGCGGCAGTTCCCCGTCTTCCTCGTCGGTGGCGGCGCCA
TGGCAGCGGACGCCCCTTCTGCTTCTGCTTTCGATGCTTCGCGTCTGCATAGGCACTCCCTTTTGGAGTCCAGATTTGCA
GCATCGCCGATGGGCTCGTCTGACCACGGACTACGGCACGGCCCCTTCGACAGGCACTTCGCCGGGGGCAAGATCATACT
CGGCGGCCTCGCGGTGGCGATCATCGCCGCGGTCTTCTGCTACATCCGCATCACCAGGGCCAAGAAGATCGTCGAGCCAA
AAACTTAGACTTCTCTCTCTTCCCTGGTTAATATCATACCTTGAACACTTCTTTTTCGTCTTTCTTTGTAGCGAGGACAC
------GGGGAAAAAACAAATGTAACCCACGTAGATTTCGTTGTAACATGCAAAGAACAGTTAATTACTGGCGATGACTG
ATGACACAGTGTGATTCGTCTCCTTTCTTGCAGGTCCAGTGTGCTGTGTATGCCTTGCTG-AGGAAATCCTATTTTCATA
CGTATCTCTGATGTCTGAAATCATGGTGTGCTTGGATTAAATGCATGAGTGAATGATGCATGTCAAGTTCTTACCATTGG
ATGGTTA---------AGTCGTACTCTTTGGGTTGAG---TACTTTATAAAGGGCCTATAGTTGGACGGTGATGAGTTGC
CGTCC---TAGAACCTAAAAGATATGTTGCTTCTGATC------------------------------------------
---------------------------------------------------------------TAGGAGTTAATGCAGGC
ATGTGATCTTTTTATCAGTTGCTCCTGAAAAATTAGCTATCTATTAGAGAACCCTAAACTTCAGCTAAACCAGGTTTAAA
TATTAATACTAGTAATTTGAACTCCATTTATCAGAAGCATTTGGAGTATTTGTCTAAGAAACTAGCAAATCAGATTTGTG
TCTGCTATTATATATCTAACTTTGCTCCATTATAGGCTGATAGCACCACTTAATTATCAGTAAGGAAAAGGTGGCACCAG
AGGTGCAGGATCTGGATGGAGTACCACACATCGATCTCTTCAGCTACAACATGTGCAATAGTTCTAGA------------
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------------------------------------------------------------------------GAACTAAC
CTACCTAGCTAGTTCTGCTTTCTGGTAATGAGGAGAAGATGAACTGACTCGATCAAAATGCTAGCACGGTTGCTTTTTAG
TATCTTCTTAACC
>chr2B_423
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----------------------------AGCAGCCATGTCAGAGCTCCAGGTCTGCGAGCTGGGGTTTCAGATCACCTT-
------CCTGCCCCCAAAACCATGTCAACAAACTGCTGAACACTAGGCTCTGCACCTGCATGCTGCTCCGTCCAAGACCT
-----CCC-----CTTCTCCCTGGACGCAGCTGTAAGCTGACTTGCCCGCATGCTGACTTTTTCTACAACATTCAGAGAG
ATTCTCCATCCAGAATTCCAGATGTCAGTTGCTCATCGCACCCACGCCCAATGATTCCTAGAACAGCAAAACTCACCACC
CTCCAATCATTTTTTAGGAGCCACCAGCCACGCGACTGACATTTCCCCCCAGCAAATCAAGATCCGTAAAGAGTGGGCGC
GCGCATGCACGCGAGTC---ACAAATATCA-----AACTGAACTGAACCGCAGAACGGCACAGCCAGGCCGTCTCCTATA
TAAGAGCCCCTCCCGGCCGTCATCTTCTGCACAGCAACACCAAGGCAAGCACCAAGTCCACTCCTCCACAGCTA-GC---
---TCTAGCTCCTTCCGTCTCCTACATACAAATCCATTCCGTGGATCGATCTCTCCGACGATGCCTCGGCTGCTCCTCTT
GTGCCTGGTGTCCAGCCATTTCGCGGTGACCGCCGTCATGGCGCGGCAGTTCCCCGTCTTCCTCGTCGACGGTGGCGCCA
TGGCAGCAGACGCCCCGTCTGCTTCTGCTTCCGATGCCTCGCGTCTGCATAGGCACTCCCTTTTGGAGTCCAGATTCGCA
GGGTCGCCGATGGGCTCGTCTGACCACGGACTACGGCACGGCCCCTTCGACAGGCACTTCGCCGGGGGCAAGATCATACT
CGGCGGCCTCGCGGTGGCCATCATCGCCGCGGTCTTCTGCTACATCCGCATCACCAGGGCCAAGAAGATCGTCGAGCCAA
AAACTTAGACTTCTTTCTCTTCCCTGGTTAATATCATACCTTGAACACTTCCTTTTCGTCTTTCTTTGTAGCGAGGACAT
GACAT-GGGGAAAAAACAAATGTAACCCACGTAGATTTCGTTGTAACATGCAAAGAACAGTTAATTACCGGCGATGACTG
ATGACACAGCGTGATTCGTCTCATTTCTTGCAGGTCCAGTGTGCTGTGTAGGCCTTGCTG-A---AATCCTTTTTTCATA
----TCTCTGATGTCTGGAATCATGGTGTGCTTGGATTAAATGCATGAGTGAACGATGCATGTCAAGTTCTTATCATTGG
ATGGTTAAGTAGTAGTAGTAGTCCTCTTTGGGTTGAGTATTACTTTATAAAGGGCCTATAGTTGGACGGTGGTGAGTTGC
CGTCC---TAGAACCTAAAAGATATGTTGCTTCTGATCTACTCCCACCGTTCCGAATTAATTGTCGCACGTATGGATGTA
TCTAGTTGTATTTTAGTTCTAGATACATCCATTTCAGCGACAAGTAATTTGGAACGGAGGGAGTAGGAGTTAATGCAGGC
ATGTGATCTTCTTATCAGTTGCTCCTGAAAAATTAGCTATCTATTAGAAAACCCTAAACTTCAGCTAAACCCAGTTTAAA
TATTAATACTGGTAATTTGAACTCCATTTATCAGAAGCATTTGAAGTATTTGTCTAAGAAGCTAGCAAATCAGATTTGTG
TCTGGTAT----TATCTAACTTTGCTCCATTATAGGCAGATAGCACCACTTAATTATCAGTAAGGAAAAGGTGGCACCAG
AGTTGCAGGATCTGGATGGAGTACAACACATCCATCTGTTCAGCTACAACATGTGCAATAATTCTAGA------------
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------------------------------------------------------------------------CAACTAAC
CTACCTAGCTAGTTCTGCTTTCTGGTAACGAGGAGAAGATGGACTGACTCGATCAAAATGCTAGCACGGTTGCTTTTTAG
TATCTTCTTAACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-----S-----------S--------------------------------------S-----------------------
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---------------------------------S------------------------S--------S------------
--S-S-----------S---------------------------------------------------------------
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-------------S--------------------S--------------------------------------S------
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-----S--------------------------------------------------------------------------
-----------------------------------------------S-----------SS--------------SSSSS
----------------------------------S----------------------------------S---------S
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-----SSS------------------------------------------------------------------------
------------------------------------------------------------------S-------------
----------------------S---------------------------------------------------------
-------------------------S------------------------------------------------------
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--------------------------------------------------------------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-S------------------------------------------------------------------------------
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>forward_266
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------ACCTAGGAGCCAAAACACCG------------------------------------------------------
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>reverse_2339
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------------------TCGTACAGTGTTGGACAGGC------------------------------------------
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