Multiple sequence alignment - TraesCS2D01G212700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G212700 chr2D 100.000 2312 0 0 1 2312 171445835 171443524 0.000000e+00 4270.0
1 TraesCS2D01G212700 chr2D 93.574 638 33 3 1683 2312 155826277 155825640 0.000000e+00 944.0
2 TraesCS2D01G212700 chr2D 91.693 638 47 6 1678 2312 555511441 555510807 0.000000e+00 880.0
3 TraesCS2D01G212700 chr2D 81.794 747 72 30 892 1603 528998778 528999495 3.330000e-158 568.0
4 TraesCS2D01G212700 chr2D 90.959 365 30 2 951 1315 527648195 527647834 2.670000e-134 488.0
5 TraesCS2D01G212700 chr2D 82.734 139 16 5 7 140 326275399 326275534 1.450000e-22 117.0
6 TraesCS2D01G212700 chr2D 85.882 85 10 2 187 269 427953672 427953756 3.160000e-14 89.8
7 TraesCS2D01G212700 chr2D 90.196 51 4 1 221 270 580268920 580268970 5.330000e-07 65.8
8 TraesCS2D01G212700 chr2A 92.799 1236 53 18 428 1641 178170468 178171689 0.000000e+00 1757.0
9 TraesCS2D01G212700 chr2A 87.850 535 44 13 892 1416 673452027 673452550 1.960000e-170 608.0
10 TraesCS2D01G212700 chr2A 87.268 377 31 6 6 378 178087421 178087784 4.600000e-112 414.0
11 TraesCS2D01G212700 chr2A 81.529 157 22 4 3 153 93926069 93926224 3.120000e-24 122.0
12 TraesCS2D01G212700 chr2A 94.444 54 3 0 377 430 178099024 178099077 1.470000e-12 84.2
13 TraesCS2D01G212700 chr2A 83.544 79 9 4 193 269 723567168 723567244 1.150000e-08 71.3
14 TraesCS2D01G212700 chr2B 96.163 808 25 2 835 1641 225691532 225692334 0.000000e+00 1315.0
15 TraesCS2D01G212700 chr2B 85.388 657 60 14 869 1501 628156983 628157627 0.000000e+00 649.0
16 TraesCS2D01G212700 chr2B 84.660 515 52 15 892 1401 625009131 625008639 2.670000e-134 488.0
17 TraesCS2D01G212700 chr2B 89.973 369 32 2 951 1314 585890228 585890596 2.690000e-129 472.0
18 TraesCS2D01G212700 chr7D 93.281 640 35 6 1676 2312 262110 261476 0.000000e+00 937.0
19 TraesCS2D01G212700 chr7D 91.017 423 35 3 994 1416 134467046 134466627 3.330000e-158 568.0
20 TraesCS2D01G212700 chr7D 86.014 143 13 4 3 139 554222821 554222962 1.850000e-31 147.0
21 TraesCS2D01G212700 chr7D 86.842 76 9 1 195 269 530896949 530897024 1.470000e-12 84.2
22 TraesCS2D01G212700 chr6D 92.891 633 42 3 1681 2312 413279320 413278690 0.000000e+00 917.0
23 TraesCS2D01G212700 chr6D 80.795 151 21 5 6 151 15589224 15589371 6.750000e-21 111.0
24 TraesCS2D01G212700 chr6D 81.884 138 19 5 6 138 379707375 379707239 6.750000e-21 111.0
25 TraesCS2D01G212700 chr6D 80.986 142 21 5 2 138 379710200 379710060 8.730000e-20 108.0
26 TraesCS2D01G212700 chr6D 81.159 138 20 5 6 138 254821495 254821359 3.140000e-19 106.0
27 TraesCS2D01G212700 chr6D 80.986 142 20 6 3 138 254838240 254838100 3.140000e-19 106.0
28 TraesCS2D01G212700 chr6D 95.556 45 1 1 226 269 444708154 444708198 1.150000e-08 71.3
29 TraesCS2D01G212700 chr6D 90.244 41 4 0 100 140 20607174 20607134 1.000000e-03 54.7
30 TraesCS2D01G212700 chr5D 92.417 633 43 3 1681 2312 430086761 430087389 0.000000e+00 898.0
31 TraesCS2D01G212700 chr5D 80.000 160 22 10 4 155 377375628 377375785 2.430000e-20 110.0
32 TraesCS2D01G212700 chr5D 96.774 31 1 0 228 258 506619652 506619622 4.000000e-03 52.8
33 TraesCS2D01G212700 chr1D 93.388 605 35 4 1709 2312 355831490 355830890 0.000000e+00 891.0
34 TraesCS2D01G212700 chr1D 79.861 144 21 5 3 140 7848410 7848551 5.260000e-17 99.0
35 TraesCS2D01G212700 chr1D 84.091 88 10 4 187 271 398492827 398492741 5.290000e-12 82.4
36 TraesCS2D01G212700 chr3D 92.742 620 37 6 1701 2312 535577074 535577693 0.000000e+00 889.0
37 TraesCS2D01G212700 chr3D 92.974 612 38 4 1703 2312 597928846 597929454 0.000000e+00 887.0
38 TraesCS2D01G212700 chr3D 83.453 139 14 8 7 138 539707852 539707988 1.120000e-23 121.0
39 TraesCS2D01G212700 chr3A 92.258 620 46 2 1695 2312 13015335 13014716 0.000000e+00 878.0
40 TraesCS2D01G212700 chr3A 88.406 138 14 1 537 674 601553176 601553041 5.110000e-37 165.0
41 TraesCS2D01G212700 chr3A 86.486 74 9 1 198 270 62437944 62438017 1.900000e-11 80.5
42 TraesCS2D01G212700 chr7A 90.714 420 36 3 994 1413 133627440 133627024 7.220000e-155 556.0
43 TraesCS2D01G212700 chr5B 84.000 150 21 3 541 689 6589700 6589553 8.610000e-30 141.0
44 TraesCS2D01G212700 chr5B 83.117 154 19 4 2 151 594275906 594275756 1.440000e-27 134.0
45 TraesCS2D01G212700 chr4B 83.030 165 17 9 3 158 371291338 371291500 3.100000e-29 139.0
46 TraesCS2D01G212700 chr4B 87.778 90 8 3 186 272 671812015 671812104 4.060000e-18 102.0
47 TraesCS2D01G212700 chr4B 96.000 50 1 1 221 269 541857844 541857795 1.900000e-11 80.5
48 TraesCS2D01G212700 chr4D 85.507 138 12 3 4 140 275334447 275334577 1.110000e-28 137.0
49 TraesCS2D01G212700 chr4D 83.916 143 16 4 3 140 193194569 193194709 1.860000e-26 130.0
50 TraesCS2D01G212700 chr4D 84.173 139 15 4 7 140 193192195 193192331 6.700000e-26 128.0
51 TraesCS2D01G212700 chr4D 79.874 159 20 9 1 152 421228326 421228173 3.140000e-19 106.0
52 TraesCS2D01G212700 chr3B 84.397 141 15 7 3 138 739990810 739990672 5.180000e-27 132.0
53 TraesCS2D01G212700 chr3B 100.000 30 0 0 285 314 381057216 381057187 3.210000e-04 56.5
54 TraesCS2D01G212700 chr7B 84.286 140 15 5 6 140 62963236 62963099 1.860000e-26 130.0
55 TraesCS2D01G212700 chr7B 82.482 137 20 1 6 138 237495028 237494892 1.450000e-22 117.0
56 TraesCS2D01G212700 chr7B 81.046 153 21 7 3 148 677419057 677419208 5.220000e-22 115.0
57 TraesCS2D01G212700 chr7B 87.342 79 7 3 193 269 296348729 296348652 1.140000e-13 87.9
58 TraesCS2D01G212700 chr7B 80.000 90 15 3 186 272 544324623 544324712 1.920000e-06 63.9
59 TraesCS2D01G212700 chr1A 80.645 155 23 6 3 152 588372615 588372767 1.880000e-21 113.0
60 TraesCS2D01G212700 chr1A 85.870 92 10 3 182 271 2851518 2851428 6.800000e-16 95.3
61 TraesCS2D01G212700 chr1A 94.444 36 1 1 239 273 380309936 380309971 1.000000e-03 54.7
62 TraesCS2D01G212700 chr4A 80.000 160 24 7 3 156 713929870 713930027 6.750000e-21 111.0
63 TraesCS2D01G212700 chr4A 80.128 156 23 7 7 156 713927562 713927715 2.430000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G212700 chr2D 171443524 171445835 2311 True 4270 4270 100.000 1 2312 1 chr2D.!!$R2 2311
1 TraesCS2D01G212700 chr2D 155825640 155826277 637 True 944 944 93.574 1683 2312 1 chr2D.!!$R1 629
2 TraesCS2D01G212700 chr2D 555510807 555511441 634 True 880 880 91.693 1678 2312 1 chr2D.!!$R4 634
3 TraesCS2D01G212700 chr2D 528998778 528999495 717 False 568 568 81.794 892 1603 1 chr2D.!!$F3 711
4 TraesCS2D01G212700 chr2A 178170468 178171689 1221 False 1757 1757 92.799 428 1641 1 chr2A.!!$F4 1213
5 TraesCS2D01G212700 chr2A 673452027 673452550 523 False 608 608 87.850 892 1416 1 chr2A.!!$F5 524
6 TraesCS2D01G212700 chr2B 225691532 225692334 802 False 1315 1315 96.163 835 1641 1 chr2B.!!$F1 806
7 TraesCS2D01G212700 chr2B 628156983 628157627 644 False 649 649 85.388 869 1501 1 chr2B.!!$F3 632
8 TraesCS2D01G212700 chr7D 261476 262110 634 True 937 937 93.281 1676 2312 1 chr7D.!!$R1 636
9 TraesCS2D01G212700 chr6D 413278690 413279320 630 True 917 917 92.891 1681 2312 1 chr6D.!!$R4 631
10 TraesCS2D01G212700 chr5D 430086761 430087389 628 False 898 898 92.417 1681 2312 1 chr5D.!!$F2 631
11 TraesCS2D01G212700 chr1D 355830890 355831490 600 True 891 891 93.388 1709 2312 1 chr1D.!!$R1 603
12 TraesCS2D01G212700 chr3D 535577074 535577693 619 False 889 889 92.742 1701 2312 1 chr3D.!!$F1 611
13 TraesCS2D01G212700 chr3D 597928846 597929454 608 False 887 887 92.974 1703 2312 1 chr3D.!!$F3 609
14 TraesCS2D01G212700 chr3A 13014716 13015335 619 True 878 878 92.258 1695 2312 1 chr3A.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.105964 GCCGTATACAGGACATGCCA 59.894 55.0 15.19 0.0 40.02 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1722 0.108756 GCTAGGGTTGGACGTGTCTC 60.109 60.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.964476 AAGGAATGTTGACTATCGTGATTATT 57.036 30.769 0.00 0.00 0.00 1.40
27 28 9.698309 AGGAATGTTGACTATCGTGATTATTAG 57.302 33.333 0.00 0.00 0.00 1.73
28 29 8.926710 GGAATGTTGACTATCGTGATTATTAGG 58.073 37.037 0.00 0.00 0.00 2.69
29 30 9.692749 GAATGTTGACTATCGTGATTATTAGGA 57.307 33.333 0.00 0.00 0.00 2.94
31 32 9.698309 ATGTTGACTATCGTGATTATTAGGAAG 57.302 33.333 0.00 0.00 0.00 3.46
32 33 8.692710 TGTTGACTATCGTGATTATTAGGAAGT 58.307 33.333 0.00 0.00 0.00 3.01
70 71 7.900782 TTATTTCTACCTTGTCTTGTACTGC 57.099 36.000 0.00 0.00 0.00 4.40
71 72 4.948341 TTCTACCTTGTCTTGTACTGCA 57.052 40.909 0.00 0.00 0.00 4.41
72 73 4.948341 TCTACCTTGTCTTGTACTGCAA 57.052 40.909 0.00 0.00 35.50 4.08
84 85 4.019792 TGTACTGCAAGATGGTTCATGT 57.980 40.909 0.00 0.00 37.43 3.21
85 86 5.159273 TGTACTGCAAGATGGTTCATGTA 57.841 39.130 0.00 0.00 37.43 2.29
86 87 4.935205 TGTACTGCAAGATGGTTCATGTAC 59.065 41.667 0.00 0.00 37.43 2.90
87 88 4.292186 ACTGCAAGATGGTTCATGTACT 57.708 40.909 2.29 0.00 37.43 2.73
88 89 5.420725 ACTGCAAGATGGTTCATGTACTA 57.579 39.130 2.29 0.00 37.43 1.82
89 90 5.178797 ACTGCAAGATGGTTCATGTACTAC 58.821 41.667 2.29 0.00 37.43 2.73
90 91 5.046304 ACTGCAAGATGGTTCATGTACTACT 60.046 40.000 2.29 0.00 37.43 2.57
91 92 6.154534 ACTGCAAGATGGTTCATGTACTACTA 59.845 38.462 2.29 0.00 37.43 1.82
92 93 7.124573 TGCAAGATGGTTCATGTACTACTAT 57.875 36.000 2.29 0.00 0.00 2.12
93 94 6.986231 TGCAAGATGGTTCATGTACTACTATG 59.014 38.462 2.29 0.00 0.00 2.23
94 95 6.986817 GCAAGATGGTTCATGTACTACTATGT 59.013 38.462 2.29 0.00 0.00 2.29
95 96 8.141909 GCAAGATGGTTCATGTACTACTATGTA 58.858 37.037 2.29 0.00 0.00 2.29
105 106 9.511144 TCATGTACTACTATGTATTTGTTCACG 57.489 33.333 0.00 0.00 0.00 4.35
106 107 9.511144 CATGTACTACTATGTATTTGTTCACGA 57.489 33.333 0.00 0.00 0.00 4.35
107 108 9.731819 ATGTACTACTATGTATTTGTTCACGAG 57.268 33.333 0.00 0.00 0.00 4.18
108 109 8.186163 TGTACTACTATGTATTTGTTCACGAGG 58.814 37.037 0.00 0.00 0.00 4.63
109 110 6.040878 ACTACTATGTATTTGTTCACGAGGC 58.959 40.000 0.00 0.00 0.00 4.70
110 111 5.086104 ACTATGTATTTGTTCACGAGGCT 57.914 39.130 0.00 0.00 0.00 4.58
111 112 5.109903 ACTATGTATTTGTTCACGAGGCTC 58.890 41.667 3.87 3.87 0.00 4.70
112 113 3.394674 TGTATTTGTTCACGAGGCTCA 57.605 42.857 15.95 0.00 0.00 4.26
113 114 3.734463 TGTATTTGTTCACGAGGCTCAA 58.266 40.909 15.95 0.00 0.00 3.02
114 115 3.745975 TGTATTTGTTCACGAGGCTCAAG 59.254 43.478 15.95 6.07 0.00 3.02
115 116 0.944386 TTTGTTCACGAGGCTCAAGC 59.056 50.000 15.95 2.04 41.14 4.01
116 117 0.179059 TTGTTCACGAGGCTCAAGCA 60.179 50.000 15.95 4.74 44.36 3.91
117 118 0.179059 TGTTCACGAGGCTCAAGCAA 60.179 50.000 15.95 0.00 44.36 3.91
118 119 1.160137 GTTCACGAGGCTCAAGCAAT 58.840 50.000 15.95 0.00 44.36 3.56
119 120 2.289382 TGTTCACGAGGCTCAAGCAATA 60.289 45.455 15.95 0.00 44.36 1.90
120 121 2.010145 TCACGAGGCTCAAGCAATAC 57.990 50.000 15.95 0.00 44.36 1.89
121 122 1.275010 TCACGAGGCTCAAGCAATACA 59.725 47.619 15.95 0.00 44.36 2.29
122 123 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
123 124 2.076863 ACGAGGCTCAAGCAATACAAC 58.923 47.619 15.95 0.00 44.36 3.32
124 125 2.076100 CGAGGCTCAAGCAATACAACA 58.924 47.619 15.95 0.00 44.36 3.33
125 126 2.483877 CGAGGCTCAAGCAATACAACAA 59.516 45.455 15.95 0.00 44.36 2.83
126 127 3.667960 CGAGGCTCAAGCAATACAACAAC 60.668 47.826 15.95 0.00 44.36 3.32
127 128 3.221771 AGGCTCAAGCAATACAACAACA 58.778 40.909 4.13 0.00 44.36 3.33
128 129 3.636300 AGGCTCAAGCAATACAACAACAA 59.364 39.130 4.13 0.00 44.36 2.83
129 130 4.281688 AGGCTCAAGCAATACAACAACAAT 59.718 37.500 4.13 0.00 44.36 2.71
130 131 4.990426 GGCTCAAGCAATACAACAACAATT 59.010 37.500 4.13 0.00 44.36 2.32
131 132 5.119125 GGCTCAAGCAATACAACAACAATTC 59.881 40.000 4.13 0.00 44.36 2.17
132 133 5.119125 GCTCAAGCAATACAACAACAATTCC 59.881 40.000 0.00 0.00 41.59 3.01
133 134 6.154203 TCAAGCAATACAACAACAATTCCA 57.846 33.333 0.00 0.00 0.00 3.53
134 135 5.982516 TCAAGCAATACAACAACAATTCCAC 59.017 36.000 0.00 0.00 0.00 4.02
135 136 4.881920 AGCAATACAACAACAATTCCACC 58.118 39.130 0.00 0.00 0.00 4.61
136 137 4.343526 AGCAATACAACAACAATTCCACCA 59.656 37.500 0.00 0.00 0.00 4.17
137 138 5.053145 GCAATACAACAACAATTCCACCAA 58.947 37.500 0.00 0.00 0.00 3.67
138 139 5.700373 GCAATACAACAACAATTCCACCAAT 59.300 36.000 0.00 0.00 0.00 3.16
139 140 6.128580 GCAATACAACAACAATTCCACCAATC 60.129 38.462 0.00 0.00 0.00 2.67
140 141 6.662865 ATACAACAACAATTCCACCAATCA 57.337 33.333 0.00 0.00 0.00 2.57
141 142 5.549742 ACAACAACAATTCCACCAATCAT 57.450 34.783 0.00 0.00 0.00 2.45
142 143 5.540911 ACAACAACAATTCCACCAATCATC 58.459 37.500 0.00 0.00 0.00 2.92
143 144 5.305128 ACAACAACAATTCCACCAATCATCT 59.695 36.000 0.00 0.00 0.00 2.90
144 145 6.183360 ACAACAACAATTCCACCAATCATCTT 60.183 34.615 0.00 0.00 0.00 2.40
145 146 6.423776 ACAACAATTCCACCAATCATCTTT 57.576 33.333 0.00 0.00 0.00 2.52
146 147 6.458210 ACAACAATTCCACCAATCATCTTTC 58.542 36.000 0.00 0.00 0.00 2.62
147 148 5.665916 ACAATTCCACCAATCATCTTTCC 57.334 39.130 0.00 0.00 0.00 3.13
148 149 5.336102 ACAATTCCACCAATCATCTTTCCT 58.664 37.500 0.00 0.00 0.00 3.36
149 150 5.420104 ACAATTCCACCAATCATCTTTCCTC 59.580 40.000 0.00 0.00 0.00 3.71
150 151 3.652057 TCCACCAATCATCTTTCCTCC 57.348 47.619 0.00 0.00 0.00 4.30
151 152 3.192944 TCCACCAATCATCTTTCCTCCT 58.807 45.455 0.00 0.00 0.00 3.69
152 153 4.370776 TCCACCAATCATCTTTCCTCCTA 58.629 43.478 0.00 0.00 0.00 2.94
153 154 4.164221 TCCACCAATCATCTTTCCTCCTAC 59.836 45.833 0.00 0.00 0.00 3.18
154 155 4.080356 CCACCAATCATCTTTCCTCCTACA 60.080 45.833 0.00 0.00 0.00 2.74
155 156 5.500234 CACCAATCATCTTTCCTCCTACAA 58.500 41.667 0.00 0.00 0.00 2.41
156 157 5.945784 CACCAATCATCTTTCCTCCTACAAA 59.054 40.000 0.00 0.00 0.00 2.83
157 158 6.604795 CACCAATCATCTTTCCTCCTACAAAT 59.395 38.462 0.00 0.00 0.00 2.32
158 159 7.123247 CACCAATCATCTTTCCTCCTACAAATT 59.877 37.037 0.00 0.00 0.00 1.82
159 160 7.340487 ACCAATCATCTTTCCTCCTACAAATTC 59.660 37.037 0.00 0.00 0.00 2.17
160 161 7.340232 CCAATCATCTTTCCTCCTACAAATTCA 59.660 37.037 0.00 0.00 0.00 2.57
161 162 8.742777 CAATCATCTTTCCTCCTACAAATTCAA 58.257 33.333 0.00 0.00 0.00 2.69
162 163 9.484806 AATCATCTTTCCTCCTACAAATTCAAT 57.515 29.630 0.00 0.00 0.00 2.57
163 164 8.284945 TCATCTTTCCTCCTACAAATTCAATG 57.715 34.615 0.00 0.00 0.00 2.82
164 165 8.108999 TCATCTTTCCTCCTACAAATTCAATGA 58.891 33.333 0.00 0.00 0.00 2.57
165 166 8.742777 CATCTTTCCTCCTACAAATTCAATGAA 58.257 33.333 0.00 0.00 0.00 2.57
166 167 8.704849 TCTTTCCTCCTACAAATTCAATGAAA 57.295 30.769 0.00 0.00 0.00 2.69
167 168 9.312904 TCTTTCCTCCTACAAATTCAATGAAAT 57.687 29.630 0.00 0.00 0.00 2.17
168 169 9.362539 CTTTCCTCCTACAAATTCAATGAAATG 57.637 33.333 0.00 5.25 0.00 2.32
169 170 8.421249 TTCCTCCTACAAATTCAATGAAATGT 57.579 30.769 17.63 17.63 32.94 2.71
170 171 8.055279 TCCTCCTACAAATTCAATGAAATGTC 57.945 34.615 17.21 0.00 31.53 3.06
171 172 7.122650 TCCTCCTACAAATTCAATGAAATGTCC 59.877 37.037 17.21 0.00 31.53 4.02
172 173 6.851609 TCCTACAAATTCAATGAAATGTCCG 58.148 36.000 17.21 11.58 31.53 4.79
173 174 6.432783 TCCTACAAATTCAATGAAATGTCCGT 59.567 34.615 17.21 5.47 31.53 4.69
174 175 7.040062 TCCTACAAATTCAATGAAATGTCCGTT 60.040 33.333 17.21 0.00 31.53 4.44
175 176 8.240682 CCTACAAATTCAATGAAATGTCCGTTA 58.759 33.333 17.21 3.85 31.53 3.18
176 177 9.787532 CTACAAATTCAATGAAATGTCCGTTAT 57.212 29.630 17.21 0.04 31.53 1.89
177 178 8.687824 ACAAATTCAATGAAATGTCCGTTATC 57.312 30.769 10.67 0.00 0.00 1.75
178 179 7.484641 ACAAATTCAATGAAATGTCCGTTATCG 59.515 33.333 10.67 0.00 0.00 2.92
194 195 6.291067 CGTTATCGGAAAAATTAGTACCCC 57.709 41.667 0.00 0.00 0.00 4.95
195 196 6.051074 CGTTATCGGAAAAATTAGTACCCCT 58.949 40.000 0.00 0.00 0.00 4.79
196 197 6.539826 CGTTATCGGAAAAATTAGTACCCCTT 59.460 38.462 0.00 0.00 0.00 3.95
197 198 7.254556 CGTTATCGGAAAAATTAGTACCCCTTC 60.255 40.741 0.00 0.00 0.00 3.46
198 199 4.506758 TCGGAAAAATTAGTACCCCTTCG 58.493 43.478 0.00 0.00 0.00 3.79
199 200 4.020307 TCGGAAAAATTAGTACCCCTTCGT 60.020 41.667 0.00 0.00 0.00 3.85
200 201 4.330894 CGGAAAAATTAGTACCCCTTCGTC 59.669 45.833 0.00 0.00 0.00 4.20
201 202 5.494724 GGAAAAATTAGTACCCCTTCGTCT 58.505 41.667 0.00 0.00 0.00 4.18
202 203 5.583854 GGAAAAATTAGTACCCCTTCGTCTC 59.416 44.000 0.00 0.00 0.00 3.36
203 204 5.750352 AAAATTAGTACCCCTTCGTCTCA 57.250 39.130 0.00 0.00 0.00 3.27
204 205 5.750352 AAATTAGTACCCCTTCGTCTCAA 57.250 39.130 0.00 0.00 0.00 3.02
205 206 5.750352 AATTAGTACCCCTTCGTCTCAAA 57.250 39.130 0.00 0.00 0.00 2.69
206 207 5.750352 ATTAGTACCCCTTCGTCTCAAAA 57.250 39.130 0.00 0.00 0.00 2.44
207 208 3.397849 AGTACCCCTTCGTCTCAAAAC 57.602 47.619 0.00 0.00 0.00 2.43
208 209 2.701951 AGTACCCCTTCGTCTCAAAACA 59.298 45.455 0.00 0.00 0.00 2.83
209 210 2.721425 ACCCCTTCGTCTCAAAACAA 57.279 45.000 0.00 0.00 0.00 2.83
210 211 2.572290 ACCCCTTCGTCTCAAAACAAG 58.428 47.619 0.00 0.00 0.00 3.16
211 212 2.092592 ACCCCTTCGTCTCAAAACAAGT 60.093 45.455 0.00 0.00 0.00 3.16
212 213 2.290641 CCCCTTCGTCTCAAAACAAGTG 59.709 50.000 0.00 0.00 0.00 3.16
213 214 2.943033 CCCTTCGTCTCAAAACAAGTGT 59.057 45.455 0.00 0.00 0.00 3.55
214 215 3.377172 CCCTTCGTCTCAAAACAAGTGTT 59.623 43.478 0.00 0.00 40.50 3.32
276 277 8.943909 AGTTAAGACACTTATTTTAGATCCCG 57.056 34.615 0.00 0.00 0.00 5.14
277 278 7.494952 AGTTAAGACACTTATTTTAGATCCCGC 59.505 37.037 0.00 0.00 0.00 6.13
278 279 5.353394 AGACACTTATTTTAGATCCCGCA 57.647 39.130 0.00 0.00 0.00 5.69
279 280 5.741011 AGACACTTATTTTAGATCCCGCAA 58.259 37.500 0.00 0.00 0.00 4.85
280 281 5.817816 AGACACTTATTTTAGATCCCGCAAG 59.182 40.000 0.00 0.00 0.00 4.01
281 282 5.741011 ACACTTATTTTAGATCCCGCAAGA 58.259 37.500 0.00 0.00 43.02 3.02
282 283 6.177610 ACACTTATTTTAGATCCCGCAAGAA 58.822 36.000 0.00 0.00 43.02 2.52
283 284 6.657541 ACACTTATTTTAGATCCCGCAAGAAA 59.342 34.615 0.00 0.00 43.02 2.52
284 285 7.175990 ACACTTATTTTAGATCCCGCAAGAAAA 59.824 33.333 0.00 0.00 43.02 2.29
285 286 8.026607 CACTTATTTTAGATCCCGCAAGAAAAA 58.973 33.333 0.00 0.00 43.02 1.94
286 287 8.749354 ACTTATTTTAGATCCCGCAAGAAAAAT 58.251 29.630 0.00 0.00 43.02 1.82
287 288 8.925161 TTATTTTAGATCCCGCAAGAAAAATG 57.075 30.769 0.00 0.00 43.02 2.32
288 289 6.582677 TTTTAGATCCCGCAAGAAAAATGA 57.417 33.333 0.00 0.00 43.02 2.57
289 290 5.560966 TTAGATCCCGCAAGAAAAATGAC 57.439 39.130 0.00 0.00 43.02 3.06
290 291 3.420893 AGATCCCGCAAGAAAAATGACA 58.579 40.909 0.00 0.00 43.02 3.58
291 292 4.019174 AGATCCCGCAAGAAAAATGACAT 58.981 39.130 0.00 0.00 43.02 3.06
292 293 4.463891 AGATCCCGCAAGAAAAATGACATT 59.536 37.500 0.00 0.00 43.02 2.71
293 294 4.599047 TCCCGCAAGAAAAATGACATTT 57.401 36.364 7.62 7.62 43.02 2.32
294 295 5.713792 TCCCGCAAGAAAAATGACATTTA 57.286 34.783 13.69 0.00 43.02 1.40
295 296 6.279513 TCCCGCAAGAAAAATGACATTTAT 57.720 33.333 13.69 1.19 43.02 1.40
296 297 6.696411 TCCCGCAAGAAAAATGACATTTATT 58.304 32.000 13.69 10.07 43.02 1.40
297 298 7.158021 TCCCGCAAGAAAAATGACATTTATTT 58.842 30.769 13.69 5.76 43.02 1.40
298 299 7.659390 TCCCGCAAGAAAAATGACATTTATTTT 59.341 29.630 13.69 5.07 38.88 1.82
299 300 8.930760 CCCGCAAGAAAAATGACATTTATTTTA 58.069 29.630 13.69 0.00 36.89 1.52
300 301 9.956797 CCGCAAGAAAAATGACATTTATTTTAG 57.043 29.630 13.69 4.76 36.89 1.85
312 313 9.753674 TGACATTTATTTTAGAATGAAGGGAGT 57.246 29.630 3.36 0.00 36.87 3.85
320 321 9.927081 ATTTTAGAATGAAGGGAGTACATCATT 57.073 29.630 5.54 5.54 43.25 2.57
325 326 7.875041 AGAATGAAGGGAGTACATCATTAATCG 59.125 37.037 5.79 0.00 41.29 3.34
326 327 6.479972 TGAAGGGAGTACATCATTAATCGT 57.520 37.500 0.00 0.00 0.00 3.73
327 328 6.280643 TGAAGGGAGTACATCATTAATCGTG 58.719 40.000 0.00 0.00 0.00 4.35
328 329 5.871396 AGGGAGTACATCATTAATCGTGT 57.129 39.130 0.00 7.26 0.00 4.49
329 330 5.601662 AGGGAGTACATCATTAATCGTGTG 58.398 41.667 10.90 0.29 0.00 3.82
330 331 5.128827 AGGGAGTACATCATTAATCGTGTGT 59.871 40.000 10.90 5.18 0.00 3.72
331 332 6.322969 AGGGAGTACATCATTAATCGTGTGTA 59.677 38.462 10.90 4.42 0.00 2.90
332 333 6.420008 GGGAGTACATCATTAATCGTGTGTAC 59.580 42.308 14.95 14.95 41.14 2.90
333 334 6.976349 GGAGTACATCATTAATCGTGTGTACA 59.024 38.462 20.13 0.00 42.48 2.90
334 335 7.490079 GGAGTACATCATTAATCGTGTGTACAA 59.510 37.037 20.13 0.00 42.48 2.41
335 336 8.407457 AGTACATCATTAATCGTGTGTACAAG 57.593 34.615 20.13 0.00 42.48 3.16
336 337 8.248253 AGTACATCATTAATCGTGTGTACAAGA 58.752 33.333 20.13 3.27 42.48 3.02
337 338 7.290857 ACATCATTAATCGTGTGTACAAGAC 57.709 36.000 0.00 0.00 37.20 3.01
338 339 6.034577 ACATCATTAATCGTGTGTACAAGACG 59.965 38.462 18.27 18.27 37.20 4.18
339 340 5.463286 TCATTAATCGTGTGTACAAGACGT 58.537 37.500 21.65 10.95 37.20 4.34
340 341 6.610456 TCATTAATCGTGTGTACAAGACGTA 58.390 36.000 21.65 12.77 37.20 3.57
368 369 3.380479 TTAGCCGTATACAGGACATGC 57.620 47.619 15.19 1.66 0.00 4.06
369 370 0.393077 AGCCGTATACAGGACATGCC 59.607 55.000 15.19 0.00 0.00 4.40
370 371 0.105964 GCCGTATACAGGACATGCCA 59.894 55.000 15.19 0.00 40.02 4.92
371 372 1.474320 GCCGTATACAGGACATGCCAA 60.474 52.381 15.19 0.00 40.02 4.52
372 373 2.210116 CCGTATACAGGACATGCCAAC 58.790 52.381 3.32 0.00 40.02 3.77
373 374 2.158957 CCGTATACAGGACATGCCAACT 60.159 50.000 3.32 0.00 40.02 3.16
374 375 2.866156 CGTATACAGGACATGCCAACTG 59.134 50.000 3.32 6.90 40.02 3.16
375 376 3.678806 CGTATACAGGACATGCCAACTGT 60.679 47.826 14.05 14.05 45.32 3.55
376 377 2.949177 TACAGGACATGCCAACTGTT 57.051 45.000 14.59 0.00 41.03 3.16
377 378 2.949177 ACAGGACATGCCAACTGTTA 57.051 45.000 8.58 0.00 41.03 2.41
378 379 3.439857 ACAGGACATGCCAACTGTTAT 57.560 42.857 8.58 0.00 41.03 1.89
379 380 3.084039 ACAGGACATGCCAACTGTTATG 58.916 45.455 8.58 0.00 41.03 1.90
380 381 3.084039 CAGGACATGCCAACTGTTATGT 58.916 45.455 7.04 7.04 40.02 2.29
381 382 4.260985 CAGGACATGCCAACTGTTATGTA 58.739 43.478 7.25 0.00 40.02 2.29
382 383 4.094887 CAGGACATGCCAACTGTTATGTAC 59.905 45.833 8.46 8.46 40.02 2.90
383 384 3.377172 GGACATGCCAACTGTTATGTACC 59.623 47.826 7.25 7.23 34.18 3.34
384 385 3.006940 ACATGCCAACTGTTATGTACCG 58.993 45.455 5.79 0.00 32.41 4.02
385 386 3.266636 CATGCCAACTGTTATGTACCGA 58.733 45.455 0.00 0.00 0.00 4.69
386 387 2.967362 TGCCAACTGTTATGTACCGAG 58.033 47.619 0.00 0.00 0.00 4.63
387 388 2.277084 GCCAACTGTTATGTACCGAGG 58.723 52.381 0.00 0.00 0.00 4.63
388 389 2.354403 GCCAACTGTTATGTACCGAGGT 60.354 50.000 0.00 0.00 0.00 3.85
389 390 3.259064 CCAACTGTTATGTACCGAGGTG 58.741 50.000 4.80 0.00 0.00 4.00
390 391 2.667473 ACTGTTATGTACCGAGGTGC 57.333 50.000 4.80 4.02 0.00 5.01
391 392 2.176889 ACTGTTATGTACCGAGGTGCT 58.823 47.619 11.44 0.78 0.00 4.40
392 393 2.565834 ACTGTTATGTACCGAGGTGCTT 59.434 45.455 11.44 7.78 0.00 3.91
393 394 2.930040 CTGTTATGTACCGAGGTGCTTG 59.070 50.000 11.44 0.00 0.00 4.01
394 395 2.563620 TGTTATGTACCGAGGTGCTTGA 59.436 45.455 11.44 0.00 0.00 3.02
395 396 3.196901 TGTTATGTACCGAGGTGCTTGAT 59.803 43.478 11.44 0.28 0.00 2.57
396 397 2.604046 ATGTACCGAGGTGCTTGATC 57.396 50.000 11.44 0.00 0.00 2.92
397 398 0.172578 TGTACCGAGGTGCTTGATCG 59.827 55.000 11.44 0.00 36.24 3.69
400 401 4.094684 CGAGGTGCTTGATCGGAC 57.905 61.111 0.00 0.00 32.93 4.79
401 402 1.874019 CGAGGTGCTTGATCGGACG 60.874 63.158 0.00 0.00 32.93 4.79
402 403 1.511305 GAGGTGCTTGATCGGACGA 59.489 57.895 0.00 0.00 0.00 4.20
403 404 0.526524 GAGGTGCTTGATCGGACGAG 60.527 60.000 0.00 0.00 0.00 4.18
404 405 0.965866 AGGTGCTTGATCGGACGAGA 60.966 55.000 0.00 0.00 0.00 4.04
405 406 0.802607 GGTGCTTGATCGGACGAGAC 60.803 60.000 0.00 0.00 0.00 3.36
406 407 0.802607 GTGCTTGATCGGACGAGACC 60.803 60.000 0.00 0.00 0.00 3.85
407 408 0.965866 TGCTTGATCGGACGAGACCT 60.966 55.000 0.00 0.00 0.00 3.85
408 409 0.526524 GCTTGATCGGACGAGACCTG 60.527 60.000 0.00 0.00 0.00 4.00
409 410 0.526524 CTTGATCGGACGAGACCTGC 60.527 60.000 0.00 0.00 0.00 4.85
410 411 0.965866 TTGATCGGACGAGACCTGCT 60.966 55.000 0.00 0.00 0.00 4.24
411 412 0.107361 TGATCGGACGAGACCTGCTA 60.107 55.000 0.00 0.00 0.00 3.49
412 413 0.589223 GATCGGACGAGACCTGCTAG 59.411 60.000 0.00 0.00 0.00 3.42
413 414 0.107116 ATCGGACGAGACCTGCTAGT 60.107 55.000 0.00 0.00 34.98 2.57
414 415 0.538584 TCGGACGAGACCTGCTAGTA 59.461 55.000 0.00 0.00 32.22 1.82
415 416 0.656785 CGGACGAGACCTGCTAGTAC 59.343 60.000 0.00 0.00 32.22 2.73
416 417 1.747709 GGACGAGACCTGCTAGTACA 58.252 55.000 0.00 0.00 33.62 2.90
417 418 2.299521 GGACGAGACCTGCTAGTACAT 58.700 52.381 0.00 0.00 33.62 2.29
418 419 3.474600 GGACGAGACCTGCTAGTACATA 58.525 50.000 0.00 0.00 33.62 2.29
419 420 3.250521 GGACGAGACCTGCTAGTACATAC 59.749 52.174 0.00 0.00 33.62 2.39
420 421 3.875727 GACGAGACCTGCTAGTACATACA 59.124 47.826 0.00 0.00 32.22 2.29
421 422 4.462133 ACGAGACCTGCTAGTACATACAT 58.538 43.478 0.00 0.00 30.10 2.29
422 423 4.888239 ACGAGACCTGCTAGTACATACATT 59.112 41.667 0.00 0.00 30.10 2.71
423 424 6.060136 ACGAGACCTGCTAGTACATACATTA 58.940 40.000 0.00 0.00 30.10 1.90
424 425 6.544931 ACGAGACCTGCTAGTACATACATTAA 59.455 38.462 0.00 0.00 30.10 1.40
425 426 7.230913 ACGAGACCTGCTAGTACATACATTAAT 59.769 37.037 0.00 0.00 30.10 1.40
426 427 8.082852 CGAGACCTGCTAGTACATACATTAATT 58.917 37.037 0.00 0.00 0.00 1.40
511 513 7.982919 CAGGGCAAAATGATCTTTTCATATCAA 59.017 33.333 7.01 0.00 44.51 2.57
591 595 8.723942 AGATGAAAGTGTCACATAAGGAATAC 57.276 34.615 5.62 0.00 39.72 1.89
593 597 8.862325 ATGAAAGTGTCACATAAGGAATACAA 57.138 30.769 5.62 0.00 39.72 2.41
625 629 6.486657 TCCAGTGTCAAATAAGGAAGAAACTG 59.513 38.462 0.00 0.00 43.00 3.16
686 690 8.940397 AAAGGACCAAATAAAGAATTCTCTCA 57.060 30.769 8.78 0.00 0.00 3.27
687 691 8.940397 AAGGACCAAATAAAGAATTCTCTCAA 57.060 30.769 8.78 0.00 0.00 3.02
688 692 8.940397 AGGACCAAATAAAGAATTCTCTCAAA 57.060 30.769 8.78 0.00 0.00 2.69
689 693 9.367160 AGGACCAAATAAAGAATTCTCTCAAAA 57.633 29.630 8.78 0.00 0.00 2.44
690 694 9.981114 GGACCAAATAAAGAATTCTCTCAAAAA 57.019 29.630 8.78 0.00 0.00 1.94
739 750 0.761187 GATCAGATGGGCTGCTACCA 59.239 55.000 0.00 0.00 44.52 3.25
740 751 0.471617 ATCAGATGGGCTGCTACCAC 59.528 55.000 0.00 0.00 44.52 4.16
804 819 1.597854 TGGCTCGTTGGTTGCTGAG 60.598 57.895 0.00 0.00 0.00 3.35
817 832 1.221466 TGCTGAGTCGCTGAAAACCG 61.221 55.000 8.13 0.00 0.00 4.44
825 840 1.493311 GCTGAAAACCGACGAGCAG 59.507 57.895 0.00 0.00 0.00 4.24
830 845 2.420722 TGAAAACCGACGAGCAGTTTTT 59.579 40.909 12.01 2.18 42.21 1.94
1257 1290 3.385749 GACCGTCACCGCCATGGAT 62.386 63.158 18.40 0.00 42.00 3.41
1446 1504 7.039882 TCAATAAAACTACTCTGATCCCGAAC 58.960 38.462 0.00 0.00 0.00 3.95
1538 1603 8.097038 TCCAATCATCACTTAGATTGTATAGCC 58.903 37.037 12.47 0.00 45.97 3.93
1542 1607 5.847111 TCACTTAGATTGTATAGCCGTGT 57.153 39.130 0.00 0.00 0.00 4.49
1559 1630 4.083484 GCCGTGTTGCTAGAATTTTACACT 60.083 41.667 0.00 0.00 35.08 3.55
1582 1653 7.848051 CACTCGAGTTGCAATTTTATCAGTATC 59.152 37.037 17.26 0.00 0.00 2.24
1585 1656 8.604035 TCGAGTTGCAATTTTATCAGTATCTTC 58.396 33.333 0.59 0.00 0.00 2.87
1641 1713 4.601084 TGTTTTAGTTTGGGTTCAGTGGA 58.399 39.130 0.00 0.00 0.00 4.02
1642 1714 5.205056 TGTTTTAGTTTGGGTTCAGTGGAT 58.795 37.500 0.00 0.00 0.00 3.41
1643 1715 5.300792 TGTTTTAGTTTGGGTTCAGTGGATC 59.699 40.000 0.00 0.00 0.00 3.36
1644 1716 2.586648 AGTTTGGGTTCAGTGGATCC 57.413 50.000 4.20 4.20 32.96 3.36
1645 1717 2.065799 AGTTTGGGTTCAGTGGATCCT 58.934 47.619 14.23 0.00 34.01 3.24
1646 1718 2.162681 GTTTGGGTTCAGTGGATCCTG 58.837 52.381 14.23 3.74 34.01 3.86
1647 1719 0.698238 TTGGGTTCAGTGGATCCTGG 59.302 55.000 14.23 2.32 34.01 4.45
1648 1720 0.475632 TGGGTTCAGTGGATCCTGGT 60.476 55.000 14.23 0.00 34.01 4.00
1649 1721 1.203376 TGGGTTCAGTGGATCCTGGTA 60.203 52.381 14.23 0.00 34.01 3.25
1650 1722 1.486726 GGGTTCAGTGGATCCTGGTAG 59.513 57.143 14.23 0.00 34.01 3.18
1651 1723 2.467880 GGTTCAGTGGATCCTGGTAGA 58.532 52.381 14.23 1.17 33.14 2.59
1652 1724 2.432510 GGTTCAGTGGATCCTGGTAGAG 59.567 54.545 14.23 0.00 33.14 2.43
1653 1725 3.366396 GTTCAGTGGATCCTGGTAGAGA 58.634 50.000 14.23 0.00 33.14 3.10
1654 1726 3.019799 TCAGTGGATCCTGGTAGAGAC 57.980 52.381 14.23 0.00 33.14 3.36
1655 1727 2.311841 TCAGTGGATCCTGGTAGAGACA 59.688 50.000 14.23 0.00 33.14 3.41
1656 1728 2.428890 CAGTGGATCCTGGTAGAGACAC 59.571 54.545 14.23 0.00 0.00 3.67
1657 1729 1.405821 GTGGATCCTGGTAGAGACACG 59.594 57.143 14.23 0.00 0.00 4.49
1658 1730 1.005569 TGGATCCTGGTAGAGACACGT 59.994 52.381 14.23 0.00 0.00 4.49
1659 1731 1.677052 GGATCCTGGTAGAGACACGTC 59.323 57.143 3.84 0.00 0.00 4.34
1660 1732 1.677052 GATCCTGGTAGAGACACGTCC 59.323 57.143 0.00 0.00 0.00 4.79
1661 1733 0.402887 TCCTGGTAGAGACACGTCCA 59.597 55.000 0.00 0.00 0.00 4.02
1662 1734 1.202964 TCCTGGTAGAGACACGTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
1663 1735 1.067776 CCTGGTAGAGACACGTCCAAC 60.068 57.143 0.00 0.00 0.00 3.77
1664 1736 0.963962 TGGTAGAGACACGTCCAACC 59.036 55.000 0.00 6.35 0.00 3.77
1665 1737 0.245813 GGTAGAGACACGTCCAACCC 59.754 60.000 0.00 0.00 0.00 4.11
1666 1738 1.254954 GTAGAGACACGTCCAACCCT 58.745 55.000 0.00 0.00 0.00 4.34
1667 1739 2.440409 GTAGAGACACGTCCAACCCTA 58.560 52.381 0.00 0.00 0.00 3.53
1668 1740 1.546961 AGAGACACGTCCAACCCTAG 58.453 55.000 0.00 0.00 0.00 3.02
1669 1741 0.108756 GAGACACGTCCAACCCTAGC 60.109 60.000 0.00 0.00 0.00 3.42
1670 1742 1.079336 GACACGTCCAACCCTAGCC 60.079 63.158 0.00 0.00 0.00 3.93
1671 1743 2.125673 CACGTCCAACCCTAGCCG 60.126 66.667 0.00 0.00 0.00 5.52
1672 1744 4.078516 ACGTCCAACCCTAGCCGC 62.079 66.667 0.00 0.00 0.00 6.53
1673 1745 4.832608 CGTCCAACCCTAGCCGCC 62.833 72.222 0.00 0.00 0.00 6.13
1674 1746 4.484872 GTCCAACCCTAGCCGCCC 62.485 72.222 0.00 0.00 0.00 6.13
1677 1749 4.176752 CAACCCTAGCCGCCCCTC 62.177 72.222 0.00 0.00 0.00 4.30
1938 2017 3.399181 GGTGGATCTGGCGTCCCA 61.399 66.667 0.00 0.00 39.32 4.37
1941 2020 1.918293 TGGATCTGGCGTCCCAACT 60.918 57.895 0.00 0.00 41.58 3.16
2038 2123 2.284699 CCTCCTCCCCTGTTCGGT 60.285 66.667 0.00 0.00 0.00 4.69
2044 2129 4.619227 CCCCTGTTCGGTGTGCGT 62.619 66.667 0.00 0.00 0.00 5.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.947115 GCAGTACAAGACAAGGTAGAAATAAAT 58.053 33.333 0.00 0.00 0.00 1.40
45 46 7.934665 TGCAGTACAAGACAAGGTAGAAATAAA 59.065 33.333 0.00 0.00 0.00 1.40
46 47 7.446769 TGCAGTACAAGACAAGGTAGAAATAA 58.553 34.615 0.00 0.00 0.00 1.40
47 48 6.999950 TGCAGTACAAGACAAGGTAGAAATA 58.000 36.000 0.00 0.00 0.00 1.40
48 49 5.865085 TGCAGTACAAGACAAGGTAGAAAT 58.135 37.500 0.00 0.00 0.00 2.17
49 50 5.284861 TGCAGTACAAGACAAGGTAGAAA 57.715 39.130 0.00 0.00 0.00 2.52
50 51 4.948341 TGCAGTACAAGACAAGGTAGAA 57.052 40.909 0.00 0.00 0.00 2.10
51 52 4.948341 TTGCAGTACAAGACAAGGTAGA 57.052 40.909 0.00 0.00 33.24 2.59
62 63 4.397420 ACATGAACCATCTTGCAGTACAA 58.603 39.130 0.00 0.00 34.84 2.41
63 64 4.019792 ACATGAACCATCTTGCAGTACA 57.980 40.909 0.00 0.00 34.84 2.90
64 65 5.178797 AGTACATGAACCATCTTGCAGTAC 58.821 41.667 0.00 0.00 34.84 2.73
65 66 5.420725 AGTACATGAACCATCTTGCAGTA 57.579 39.130 0.00 0.00 34.84 2.74
66 67 4.292186 AGTACATGAACCATCTTGCAGT 57.708 40.909 0.00 0.00 34.84 4.40
67 68 5.423015 AGTAGTACATGAACCATCTTGCAG 58.577 41.667 0.00 0.00 34.84 4.41
68 69 5.420725 AGTAGTACATGAACCATCTTGCA 57.579 39.130 0.00 0.00 34.84 4.08
69 70 6.986817 ACATAGTAGTACATGAACCATCTTGC 59.013 38.462 15.33 0.00 34.84 4.01
79 80 9.511144 CGTGAACAAATACATAGTAGTACATGA 57.489 33.333 15.33 0.00 0.00 3.07
80 81 9.511144 TCGTGAACAAATACATAGTAGTACATG 57.489 33.333 2.52 7.05 0.00 3.21
81 82 9.731819 CTCGTGAACAAATACATAGTAGTACAT 57.268 33.333 2.52 0.00 0.00 2.29
82 83 8.186163 CCTCGTGAACAAATACATAGTAGTACA 58.814 37.037 2.52 0.00 0.00 2.90
83 84 7.167136 GCCTCGTGAACAAATACATAGTAGTAC 59.833 40.741 0.00 0.00 0.00 2.73
84 85 7.067859 AGCCTCGTGAACAAATACATAGTAGTA 59.932 37.037 0.00 0.00 0.00 1.82
85 86 6.040878 GCCTCGTGAACAAATACATAGTAGT 58.959 40.000 0.00 0.00 0.00 2.73
86 87 6.273825 AGCCTCGTGAACAAATACATAGTAG 58.726 40.000 0.00 0.00 0.00 2.57
87 88 6.127563 TGAGCCTCGTGAACAAATACATAGTA 60.128 38.462 0.00 0.00 0.00 1.82
88 89 5.086104 AGCCTCGTGAACAAATACATAGT 57.914 39.130 0.00 0.00 0.00 2.12
89 90 5.109210 TGAGCCTCGTGAACAAATACATAG 58.891 41.667 0.00 0.00 0.00 2.23
90 91 5.079689 TGAGCCTCGTGAACAAATACATA 57.920 39.130 0.00 0.00 0.00 2.29
91 92 3.937814 TGAGCCTCGTGAACAAATACAT 58.062 40.909 0.00 0.00 0.00 2.29
92 93 3.394674 TGAGCCTCGTGAACAAATACA 57.605 42.857 0.00 0.00 0.00 2.29
93 94 3.424962 GCTTGAGCCTCGTGAACAAATAC 60.425 47.826 0.00 0.00 34.31 1.89
94 95 2.742053 GCTTGAGCCTCGTGAACAAATA 59.258 45.455 0.00 0.00 34.31 1.40
95 96 1.537202 GCTTGAGCCTCGTGAACAAAT 59.463 47.619 0.00 0.00 34.31 2.32
96 97 0.944386 GCTTGAGCCTCGTGAACAAA 59.056 50.000 0.00 0.00 34.31 2.83
97 98 0.179059 TGCTTGAGCCTCGTGAACAA 60.179 50.000 0.00 0.00 41.18 2.83
98 99 0.179059 TTGCTTGAGCCTCGTGAACA 60.179 50.000 0.00 0.00 41.18 3.18
99 100 1.160137 ATTGCTTGAGCCTCGTGAAC 58.840 50.000 0.00 0.00 41.18 3.18
100 101 2.289382 TGTATTGCTTGAGCCTCGTGAA 60.289 45.455 0.00 0.00 41.18 3.18
101 102 1.275010 TGTATTGCTTGAGCCTCGTGA 59.725 47.619 0.00 0.00 41.18 4.35
102 103 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
103 104 2.076863 GTTGTATTGCTTGAGCCTCGT 58.923 47.619 0.00 0.00 41.18 4.18
104 105 2.076100 TGTTGTATTGCTTGAGCCTCG 58.924 47.619 0.00 0.00 41.18 4.63
105 106 3.253188 TGTTGTTGTATTGCTTGAGCCTC 59.747 43.478 0.00 0.00 41.18 4.70
106 107 3.221771 TGTTGTTGTATTGCTTGAGCCT 58.778 40.909 0.00 0.00 41.18 4.58
107 108 3.641437 TGTTGTTGTATTGCTTGAGCC 57.359 42.857 0.00 0.00 41.18 4.70
108 109 5.119125 GGAATTGTTGTTGTATTGCTTGAGC 59.881 40.000 0.00 0.00 42.50 4.26
109 110 6.144402 GTGGAATTGTTGTTGTATTGCTTGAG 59.856 38.462 0.00 0.00 0.00 3.02
110 111 5.982516 GTGGAATTGTTGTTGTATTGCTTGA 59.017 36.000 0.00 0.00 0.00 3.02
111 112 5.177327 GGTGGAATTGTTGTTGTATTGCTTG 59.823 40.000 0.00 0.00 0.00 4.01
112 113 5.163364 TGGTGGAATTGTTGTTGTATTGCTT 60.163 36.000 0.00 0.00 0.00 3.91
113 114 4.343526 TGGTGGAATTGTTGTTGTATTGCT 59.656 37.500 0.00 0.00 0.00 3.91
114 115 4.626042 TGGTGGAATTGTTGTTGTATTGC 58.374 39.130 0.00 0.00 0.00 3.56
115 116 6.927936 TGATTGGTGGAATTGTTGTTGTATTG 59.072 34.615 0.00 0.00 0.00 1.90
116 117 7.060383 TGATTGGTGGAATTGTTGTTGTATT 57.940 32.000 0.00 0.00 0.00 1.89
117 118 6.662865 TGATTGGTGGAATTGTTGTTGTAT 57.337 33.333 0.00 0.00 0.00 2.29
118 119 6.493115 AGATGATTGGTGGAATTGTTGTTGTA 59.507 34.615 0.00 0.00 0.00 2.41
119 120 5.305128 AGATGATTGGTGGAATTGTTGTTGT 59.695 36.000 0.00 0.00 0.00 3.32
120 121 5.786311 AGATGATTGGTGGAATTGTTGTTG 58.214 37.500 0.00 0.00 0.00 3.33
121 122 6.423776 AAGATGATTGGTGGAATTGTTGTT 57.576 33.333 0.00 0.00 0.00 2.83
122 123 6.423776 AAAGATGATTGGTGGAATTGTTGT 57.576 33.333 0.00 0.00 0.00 3.32
123 124 5.870978 GGAAAGATGATTGGTGGAATTGTTG 59.129 40.000 0.00 0.00 0.00 3.33
124 125 5.781818 AGGAAAGATGATTGGTGGAATTGTT 59.218 36.000 0.00 0.00 0.00 2.83
125 126 5.336102 AGGAAAGATGATTGGTGGAATTGT 58.664 37.500 0.00 0.00 0.00 2.71
126 127 5.163478 GGAGGAAAGATGATTGGTGGAATTG 60.163 44.000 0.00 0.00 0.00 2.32
127 128 4.958581 GGAGGAAAGATGATTGGTGGAATT 59.041 41.667 0.00 0.00 0.00 2.17
128 129 4.231426 AGGAGGAAAGATGATTGGTGGAAT 59.769 41.667 0.00 0.00 0.00 3.01
129 130 3.593328 AGGAGGAAAGATGATTGGTGGAA 59.407 43.478 0.00 0.00 0.00 3.53
130 131 3.192944 AGGAGGAAAGATGATTGGTGGA 58.807 45.455 0.00 0.00 0.00 4.02
131 132 3.659183 AGGAGGAAAGATGATTGGTGG 57.341 47.619 0.00 0.00 0.00 4.61
132 133 5.102953 TGTAGGAGGAAAGATGATTGGTG 57.897 43.478 0.00 0.00 0.00 4.17
133 134 5.779241 TTGTAGGAGGAAAGATGATTGGT 57.221 39.130 0.00 0.00 0.00 3.67
134 135 7.340232 TGAATTTGTAGGAGGAAAGATGATTGG 59.660 37.037 0.00 0.00 0.00 3.16
135 136 8.284945 TGAATTTGTAGGAGGAAAGATGATTG 57.715 34.615 0.00 0.00 0.00 2.67
136 137 8.884124 TTGAATTTGTAGGAGGAAAGATGATT 57.116 30.769 0.00 0.00 0.00 2.57
137 138 8.910944 CATTGAATTTGTAGGAGGAAAGATGAT 58.089 33.333 0.00 0.00 0.00 2.45
138 139 8.108999 TCATTGAATTTGTAGGAGGAAAGATGA 58.891 33.333 0.00 0.00 0.00 2.92
139 140 8.284945 TCATTGAATTTGTAGGAGGAAAGATG 57.715 34.615 0.00 0.00 0.00 2.90
140 141 8.884124 TTCATTGAATTTGTAGGAGGAAAGAT 57.116 30.769 0.00 0.00 0.00 2.40
141 142 8.704849 TTTCATTGAATTTGTAGGAGGAAAGA 57.295 30.769 0.00 0.00 0.00 2.52
142 143 9.362539 CATTTCATTGAATTTGTAGGAGGAAAG 57.637 33.333 0.00 0.00 0.00 2.62
143 144 8.869109 ACATTTCATTGAATTTGTAGGAGGAAA 58.131 29.630 11.65 0.00 0.00 3.13
144 145 8.421249 ACATTTCATTGAATTTGTAGGAGGAA 57.579 30.769 11.65 0.00 0.00 3.36
145 146 7.122650 GGACATTTCATTGAATTTGTAGGAGGA 59.877 37.037 12.76 0.00 0.00 3.71
146 147 7.260603 GGACATTTCATTGAATTTGTAGGAGG 58.739 38.462 12.76 0.00 0.00 4.30
147 148 6.968904 CGGACATTTCATTGAATTTGTAGGAG 59.031 38.462 12.76 4.85 0.00 3.69
148 149 6.432783 ACGGACATTTCATTGAATTTGTAGGA 59.567 34.615 12.76 0.00 0.00 2.94
149 150 6.620678 ACGGACATTTCATTGAATTTGTAGG 58.379 36.000 12.76 10.73 0.00 3.18
150 151 9.787532 ATAACGGACATTTCATTGAATTTGTAG 57.212 29.630 12.76 12.23 0.00 2.74
151 152 9.781834 GATAACGGACATTTCATTGAATTTGTA 57.218 29.630 12.76 2.16 0.00 2.41
152 153 7.484641 CGATAACGGACATTTCATTGAATTTGT 59.515 33.333 12.68 12.68 35.72 2.83
153 154 7.820757 CGATAACGGACATTTCATTGAATTTG 58.179 34.615 0.00 4.41 35.72 2.32
154 155 7.969387 CGATAACGGACATTTCATTGAATTT 57.031 32.000 0.00 0.00 35.72 1.82
171 172 6.051074 AGGGGTACTAATTTTTCCGATAACG 58.949 40.000 0.00 0.00 39.43 3.18
172 173 7.254556 CGAAGGGGTACTAATTTTTCCGATAAC 60.255 40.741 0.00 0.00 0.00 1.89
173 174 6.762661 CGAAGGGGTACTAATTTTTCCGATAA 59.237 38.462 0.00 0.00 0.00 1.75
174 175 6.127083 ACGAAGGGGTACTAATTTTTCCGATA 60.127 38.462 0.00 0.00 0.00 2.92
175 176 5.121105 CGAAGGGGTACTAATTTTTCCGAT 58.879 41.667 0.00 0.00 0.00 4.18
176 177 4.020307 ACGAAGGGGTACTAATTTTTCCGA 60.020 41.667 0.00 0.00 0.00 4.55
177 178 4.256110 ACGAAGGGGTACTAATTTTTCCG 58.744 43.478 0.00 0.00 0.00 4.30
178 179 5.494724 AGACGAAGGGGTACTAATTTTTCC 58.505 41.667 0.00 0.00 0.00 3.13
179 180 6.168389 TGAGACGAAGGGGTACTAATTTTTC 58.832 40.000 0.00 0.00 0.00 2.29
180 181 6.117975 TGAGACGAAGGGGTACTAATTTTT 57.882 37.500 0.00 0.00 0.00 1.94
181 182 5.750352 TGAGACGAAGGGGTACTAATTTT 57.250 39.130 0.00 0.00 0.00 1.82
182 183 5.750352 TTGAGACGAAGGGGTACTAATTT 57.250 39.130 0.00 0.00 0.00 1.82
183 184 5.750352 TTTGAGACGAAGGGGTACTAATT 57.250 39.130 0.00 0.00 0.00 1.40
184 185 5.012354 TGTTTTGAGACGAAGGGGTACTAAT 59.988 40.000 0.00 0.00 0.00 1.73
185 186 4.344679 TGTTTTGAGACGAAGGGGTACTAA 59.655 41.667 0.00 0.00 0.00 2.24
186 187 3.896888 TGTTTTGAGACGAAGGGGTACTA 59.103 43.478 0.00 0.00 0.00 1.82
187 188 2.701951 TGTTTTGAGACGAAGGGGTACT 59.298 45.455 0.00 0.00 0.00 2.73
188 189 3.116079 TGTTTTGAGACGAAGGGGTAC 57.884 47.619 0.00 0.00 0.00 3.34
189 190 3.135167 ACTTGTTTTGAGACGAAGGGGTA 59.865 43.478 0.00 0.00 0.00 3.69
190 191 2.092592 ACTTGTTTTGAGACGAAGGGGT 60.093 45.455 0.00 0.00 0.00 4.95
191 192 2.290641 CACTTGTTTTGAGACGAAGGGG 59.709 50.000 0.00 0.00 0.00 4.79
192 193 2.943033 ACACTTGTTTTGAGACGAAGGG 59.057 45.455 0.00 0.00 0.00 3.95
193 194 4.616181 AACACTTGTTTTGAGACGAAGG 57.384 40.909 0.00 0.00 33.93 3.46
250 251 9.379791 CGGGATCTAAAATAAGTGTCTTAACTT 57.620 33.333 0.00 0.00 42.89 2.66
251 252 7.494952 GCGGGATCTAAAATAAGTGTCTTAACT 59.505 37.037 0.00 0.00 0.00 2.24
252 253 7.279313 TGCGGGATCTAAAATAAGTGTCTTAAC 59.721 37.037 0.00 0.00 0.00 2.01
253 254 7.332557 TGCGGGATCTAAAATAAGTGTCTTAA 58.667 34.615 0.00 0.00 0.00 1.85
254 255 6.880484 TGCGGGATCTAAAATAAGTGTCTTA 58.120 36.000 0.00 0.00 0.00 2.10
255 256 5.741011 TGCGGGATCTAAAATAAGTGTCTT 58.259 37.500 0.00 0.00 0.00 3.01
256 257 5.353394 TGCGGGATCTAAAATAAGTGTCT 57.647 39.130 0.00 0.00 0.00 3.41
257 258 5.815740 TCTTGCGGGATCTAAAATAAGTGTC 59.184 40.000 0.00 0.00 0.00 3.67
258 259 5.741011 TCTTGCGGGATCTAAAATAAGTGT 58.259 37.500 0.00 0.00 0.00 3.55
259 260 6.677781 TTCTTGCGGGATCTAAAATAAGTG 57.322 37.500 0.00 0.00 0.00 3.16
260 261 7.696992 TTTTCTTGCGGGATCTAAAATAAGT 57.303 32.000 0.00 0.00 0.00 2.24
261 262 9.023967 CATTTTTCTTGCGGGATCTAAAATAAG 57.976 33.333 0.00 0.00 0.00 1.73
262 263 8.744652 TCATTTTTCTTGCGGGATCTAAAATAA 58.255 29.630 0.00 0.00 0.00 1.40
263 264 8.188139 GTCATTTTTCTTGCGGGATCTAAAATA 58.812 33.333 0.00 0.00 0.00 1.40
264 265 7.035612 GTCATTTTTCTTGCGGGATCTAAAAT 58.964 34.615 0.00 0.00 0.00 1.82
265 266 6.015856 TGTCATTTTTCTTGCGGGATCTAAAA 60.016 34.615 0.00 0.00 0.00 1.52
266 267 5.475220 TGTCATTTTTCTTGCGGGATCTAAA 59.525 36.000 0.00 0.00 0.00 1.85
267 268 5.007034 TGTCATTTTTCTTGCGGGATCTAA 58.993 37.500 0.00 0.00 0.00 2.10
268 269 4.584874 TGTCATTTTTCTTGCGGGATCTA 58.415 39.130 0.00 0.00 0.00 1.98
269 270 3.420893 TGTCATTTTTCTTGCGGGATCT 58.579 40.909 0.00 0.00 0.00 2.75
270 271 3.848272 TGTCATTTTTCTTGCGGGATC 57.152 42.857 0.00 0.00 0.00 3.36
271 272 4.806640 AATGTCATTTTTCTTGCGGGAT 57.193 36.364 0.00 0.00 0.00 3.85
272 273 4.599047 AAATGTCATTTTTCTTGCGGGA 57.401 36.364 4.91 0.00 0.00 5.14
273 274 6.966435 AATAAATGTCATTTTTCTTGCGGG 57.034 33.333 15.77 0.00 33.82 6.13
274 275 9.956797 CTAAAATAAATGTCATTTTTCTTGCGG 57.043 29.630 15.77 0.00 36.99 5.69
286 287 9.753674 ACTCCCTTCATTCTAAAATAAATGTCA 57.246 29.630 0.00 0.00 35.02 3.58
294 295 9.927081 AATGATGTACTCCCTTCATTCTAAAAT 57.073 29.630 0.00 0.00 35.49 1.82
299 300 7.875041 CGATTAATGATGTACTCCCTTCATTCT 59.125 37.037 0.00 0.00 38.98 2.40
300 301 7.657761 ACGATTAATGATGTACTCCCTTCATTC 59.342 37.037 0.00 0.00 38.98 2.67
301 302 7.442364 CACGATTAATGATGTACTCCCTTCATT 59.558 37.037 0.00 0.00 40.36 2.57
302 303 6.931281 CACGATTAATGATGTACTCCCTTCAT 59.069 38.462 0.00 0.00 32.39 2.57
303 304 6.127168 ACACGATTAATGATGTACTCCCTTCA 60.127 38.462 0.00 0.00 0.00 3.02
304 305 6.201044 CACACGATTAATGATGTACTCCCTTC 59.799 42.308 0.00 0.00 0.00 3.46
305 306 6.049149 CACACGATTAATGATGTACTCCCTT 58.951 40.000 0.00 0.00 0.00 3.95
306 307 5.128827 ACACACGATTAATGATGTACTCCCT 59.871 40.000 0.00 0.00 0.00 4.20
307 308 5.357257 ACACACGATTAATGATGTACTCCC 58.643 41.667 0.00 0.00 0.00 4.30
308 309 6.976349 TGTACACACGATTAATGATGTACTCC 59.024 38.462 19.03 5.54 41.78 3.85
309 310 7.980742 TGTACACACGATTAATGATGTACTC 57.019 36.000 19.03 8.22 41.78 2.59
310 311 8.248253 TCTTGTACACACGATTAATGATGTACT 58.752 33.333 19.03 6.53 41.78 2.73
311 312 8.318876 GTCTTGTACACACGATTAATGATGTAC 58.681 37.037 15.03 15.03 41.67 2.90
312 313 7.219344 CGTCTTGTACACACGATTAATGATGTA 59.781 37.037 17.83 0.00 35.49 2.29
313 314 6.034577 CGTCTTGTACACACGATTAATGATGT 59.965 38.462 17.83 0.00 35.49 3.06
314 315 6.034577 ACGTCTTGTACACACGATTAATGATG 59.965 38.462 25.85 5.83 37.00 3.07
315 316 6.097356 ACGTCTTGTACACACGATTAATGAT 58.903 36.000 25.85 5.28 37.00 2.45
316 317 5.463286 ACGTCTTGTACACACGATTAATGA 58.537 37.500 25.85 0.00 37.00 2.57
317 318 5.756950 ACGTCTTGTACACACGATTAATG 57.243 39.130 25.85 3.47 37.00 1.90
345 346 4.573201 GCATGTCCTGTATACGGCTAAAAA 59.427 41.667 6.15 0.00 0.00 1.94
346 347 4.124238 GCATGTCCTGTATACGGCTAAAA 58.876 43.478 6.15 0.00 0.00 1.52
347 348 3.493699 GGCATGTCCTGTATACGGCTAAA 60.494 47.826 6.15 0.00 0.00 1.85
348 349 2.036733 GGCATGTCCTGTATACGGCTAA 59.963 50.000 6.15 0.00 0.00 3.09
349 350 1.616865 GGCATGTCCTGTATACGGCTA 59.383 52.381 6.15 0.00 0.00 3.93
350 351 0.393077 GGCATGTCCTGTATACGGCT 59.607 55.000 6.15 0.00 0.00 5.52
351 352 0.105964 TGGCATGTCCTGTATACGGC 59.894 55.000 6.15 0.00 35.26 5.68
352 353 2.158957 AGTTGGCATGTCCTGTATACGG 60.159 50.000 4.57 4.57 35.26 4.02
353 354 2.866156 CAGTTGGCATGTCCTGTATACG 59.134 50.000 0.00 0.00 35.26 3.06
354 355 3.873910 ACAGTTGGCATGTCCTGTATAC 58.126 45.455 7.36 0.00 36.44 1.47
355 356 4.568072 AACAGTTGGCATGTCCTGTATA 57.432 40.909 9.26 0.00 37.18 1.47
356 357 3.439857 AACAGTTGGCATGTCCTGTAT 57.560 42.857 9.26 0.00 37.18 2.29
357 358 2.949177 AACAGTTGGCATGTCCTGTA 57.051 45.000 9.26 0.00 37.18 2.74
358 359 2.949177 TAACAGTTGGCATGTCCTGT 57.051 45.000 3.66 3.66 39.73 4.00
359 360 3.084039 ACATAACAGTTGGCATGTCCTG 58.916 45.455 0.00 0.00 35.26 3.86
360 361 3.439857 ACATAACAGTTGGCATGTCCT 57.560 42.857 0.00 0.00 35.26 3.85
361 362 3.377172 GGTACATAACAGTTGGCATGTCC 59.623 47.826 3.82 0.00 33.78 4.02
362 363 3.063452 CGGTACATAACAGTTGGCATGTC 59.937 47.826 3.82 0.00 33.78 3.06
363 364 3.006940 CGGTACATAACAGTTGGCATGT 58.993 45.455 5.66 5.66 35.81 3.21
364 365 3.266636 TCGGTACATAACAGTTGGCATG 58.733 45.455 0.00 0.00 0.00 4.06
365 366 3.531538 CTCGGTACATAACAGTTGGCAT 58.468 45.455 0.00 0.00 0.00 4.40
366 367 2.354303 CCTCGGTACATAACAGTTGGCA 60.354 50.000 0.00 0.00 0.00 4.92
367 368 2.277084 CCTCGGTACATAACAGTTGGC 58.723 52.381 0.00 0.00 0.00 4.52
368 369 3.259064 CACCTCGGTACATAACAGTTGG 58.741 50.000 0.00 0.00 0.00 3.77
369 370 2.671396 GCACCTCGGTACATAACAGTTG 59.329 50.000 0.00 0.00 0.00 3.16
370 371 2.565834 AGCACCTCGGTACATAACAGTT 59.434 45.455 0.00 0.00 0.00 3.16
371 372 2.176889 AGCACCTCGGTACATAACAGT 58.823 47.619 0.00 0.00 0.00 3.55
372 373 2.930040 CAAGCACCTCGGTACATAACAG 59.070 50.000 0.00 0.00 0.00 3.16
373 374 2.563620 TCAAGCACCTCGGTACATAACA 59.436 45.455 0.00 0.00 0.00 2.41
374 375 3.241067 TCAAGCACCTCGGTACATAAC 57.759 47.619 0.00 0.00 0.00 1.89
375 376 3.490249 CGATCAAGCACCTCGGTACATAA 60.490 47.826 0.00 0.00 0.00 1.90
376 377 2.034179 CGATCAAGCACCTCGGTACATA 59.966 50.000 0.00 0.00 0.00 2.29
377 378 1.202417 CGATCAAGCACCTCGGTACAT 60.202 52.381 0.00 0.00 0.00 2.29
378 379 0.172578 CGATCAAGCACCTCGGTACA 59.827 55.000 0.00 0.00 0.00 2.90
379 380 0.527817 CCGATCAAGCACCTCGGTAC 60.528 60.000 8.37 0.00 45.30 3.34
380 381 1.813859 CCGATCAAGCACCTCGGTA 59.186 57.895 8.37 0.00 45.30 4.02
381 382 2.579201 CCGATCAAGCACCTCGGT 59.421 61.111 8.37 0.00 45.30 4.69
383 384 1.874019 CGTCCGATCAAGCACCTCG 60.874 63.158 0.00 0.00 0.00 4.63
384 385 0.526524 CTCGTCCGATCAAGCACCTC 60.527 60.000 0.00 0.00 0.00 3.85
385 386 0.965866 TCTCGTCCGATCAAGCACCT 60.966 55.000 0.00 0.00 0.00 4.00
386 387 0.802607 GTCTCGTCCGATCAAGCACC 60.803 60.000 0.00 0.00 0.00 5.01
387 388 0.802607 GGTCTCGTCCGATCAAGCAC 60.803 60.000 0.00 0.00 0.00 4.40
388 389 0.965866 AGGTCTCGTCCGATCAAGCA 60.966 55.000 0.00 0.00 0.00 3.91
389 390 0.526524 CAGGTCTCGTCCGATCAAGC 60.527 60.000 0.00 0.00 0.00 4.01
390 391 0.526524 GCAGGTCTCGTCCGATCAAG 60.527 60.000 0.00 0.00 0.00 3.02
391 392 0.965866 AGCAGGTCTCGTCCGATCAA 60.966 55.000 0.00 0.00 0.00 2.57
392 393 0.107361 TAGCAGGTCTCGTCCGATCA 60.107 55.000 0.00 0.00 0.00 2.92
393 394 0.589223 CTAGCAGGTCTCGTCCGATC 59.411 60.000 0.00 0.00 0.00 3.69
394 395 0.107116 ACTAGCAGGTCTCGTCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
395 396 0.538584 TACTAGCAGGTCTCGTCCGA 59.461 55.000 0.00 0.00 0.00 4.55
396 397 0.656785 GTACTAGCAGGTCTCGTCCG 59.343 60.000 0.00 0.00 0.00 4.79
397 398 1.747709 TGTACTAGCAGGTCTCGTCC 58.252 55.000 0.00 0.00 0.00 4.79
398 399 3.875727 TGTATGTACTAGCAGGTCTCGTC 59.124 47.826 0.00 0.00 0.00 4.20
399 400 3.882444 TGTATGTACTAGCAGGTCTCGT 58.118 45.455 0.00 0.00 0.00 4.18
400 401 5.440234 AATGTATGTACTAGCAGGTCTCG 57.560 43.478 0.00 0.00 0.00 4.04
472 473 8.546083 TCATTTTGCCCTGGTATTGTATTTAT 57.454 30.769 0.00 0.00 0.00 1.40
481 482 5.721000 TGAAAAGATCATTTTGCCCTGGTAT 59.279 36.000 0.00 0.00 31.50 2.73
526 528 5.463724 GGTGTTAAATGTGATTCCGCAAAAA 59.536 36.000 0.00 0.00 36.26 1.94
591 595 8.739039 TCCTTATTTGACACTGGATGTAAATTG 58.261 33.333 0.00 0.00 43.56 2.32
593 597 8.877864 TTCCTTATTTGACACTGGATGTAAAT 57.122 30.769 0.00 0.00 43.56 1.40
694 698 0.179018 AGCCAGCCGAGTCTGTTTTT 60.179 50.000 0.00 0.00 32.32 1.94
695 699 0.603975 GAGCCAGCCGAGTCTGTTTT 60.604 55.000 0.00 0.00 32.32 2.43
703 714 0.465097 ATCAATTGGAGCCAGCCGAG 60.465 55.000 5.42 0.00 0.00 4.63
739 750 3.055094 AGCAACCCATCTGATCGTTTAGT 60.055 43.478 0.00 0.00 0.00 2.24
740 751 3.535561 AGCAACCCATCTGATCGTTTAG 58.464 45.455 0.00 0.00 0.00 1.85
778 792 0.322322 ACCAACGAGCCACCGATTTA 59.678 50.000 0.00 0.00 0.00 1.40
830 845 6.320171 TCGTCGGTTTGTTGTCAAAAATAAA 58.680 32.000 0.00 0.00 43.78 1.40
831 846 5.877031 TCGTCGGTTTGTTGTCAAAAATAA 58.123 33.333 0.00 0.00 43.78 1.40
832 847 5.481200 TCGTCGGTTTGTTGTCAAAAATA 57.519 34.783 0.00 0.00 43.78 1.40
833 848 4.347813 CTCGTCGGTTTGTTGTCAAAAAT 58.652 39.130 0.00 0.00 43.78 1.82
1257 1290 1.729484 CTTGAGCGCGAAGACGACA 60.729 57.895 12.10 0.00 42.66 4.35
1538 1603 5.118050 TCGAGTGTAAAATTCTAGCAACACG 59.882 40.000 0.00 0.00 41.51 4.49
1542 1607 6.347402 GCAACTCGAGTGTAAAATTCTAGCAA 60.347 38.462 20.85 0.00 0.00 3.91
1559 1630 8.492673 AAGATACTGATAAAATTGCAACTCGA 57.507 30.769 0.00 0.00 0.00 4.04
1582 1653 2.609459 ACAGTTTGCGTTGAGTGAGAAG 59.391 45.455 0.00 0.00 0.00 2.85
1585 1656 1.003545 CCACAGTTTGCGTTGAGTGAG 60.004 52.381 0.00 0.00 0.00 3.51
1594 1666 1.813513 AAGATCTCCCACAGTTTGCG 58.186 50.000 0.00 0.00 0.00 4.85
1641 1713 1.005569 TGGACGTGTCTCTACCAGGAT 59.994 52.381 0.00 0.00 0.00 3.24
1642 1714 0.402887 TGGACGTGTCTCTACCAGGA 59.597 55.000 0.00 0.00 0.00 3.86
1643 1715 1.067776 GTTGGACGTGTCTCTACCAGG 60.068 57.143 0.00 0.00 32.16 4.45
1644 1716 1.067776 GGTTGGACGTGTCTCTACCAG 60.068 57.143 0.00 0.00 31.55 4.00
1645 1717 0.963962 GGTTGGACGTGTCTCTACCA 59.036 55.000 0.00 0.00 31.55 3.25
1646 1718 0.245813 GGGTTGGACGTGTCTCTACC 59.754 60.000 0.00 6.73 0.00 3.18
1647 1719 1.254954 AGGGTTGGACGTGTCTCTAC 58.745 55.000 0.00 0.00 0.00 2.59
1648 1720 2.719739 CTAGGGTTGGACGTGTCTCTA 58.280 52.381 0.00 0.00 0.00 2.43
1649 1721 1.546961 CTAGGGTTGGACGTGTCTCT 58.453 55.000 0.00 0.00 0.00 3.10
1650 1722 0.108756 GCTAGGGTTGGACGTGTCTC 60.109 60.000 0.00 0.00 0.00 3.36
1651 1723 1.542187 GGCTAGGGTTGGACGTGTCT 61.542 60.000 0.00 0.00 0.00 3.41
1652 1724 1.079336 GGCTAGGGTTGGACGTGTC 60.079 63.158 0.00 0.00 0.00 3.67
1653 1725 2.939261 CGGCTAGGGTTGGACGTGT 61.939 63.158 0.00 0.00 0.00 4.49
1654 1726 2.125673 CGGCTAGGGTTGGACGTG 60.126 66.667 0.00 0.00 0.00 4.49
1655 1727 4.078516 GCGGCTAGGGTTGGACGT 62.079 66.667 0.00 0.00 0.00 4.34
1656 1728 4.832608 GGCGGCTAGGGTTGGACG 62.833 72.222 0.00 0.00 0.00 4.79
1657 1729 4.484872 GGGCGGCTAGGGTTGGAC 62.485 72.222 9.56 0.00 0.00 4.02
1660 1732 4.176752 GAGGGGCGGCTAGGGTTG 62.177 72.222 9.56 0.00 0.00 3.77
1664 1736 3.866582 CTTGGAGGGGCGGCTAGG 61.867 72.222 9.56 0.00 0.00 3.02
1665 1737 4.554036 GCTTGGAGGGGCGGCTAG 62.554 72.222 9.56 0.00 0.00 3.42
1920 1999 4.176752 GGGACGCCAGATCCACCC 62.177 72.222 0.00 0.00 38.06 4.61
2017 2099 1.996187 GAACAGGGGAGGAGGGGAC 60.996 68.421 0.00 0.00 0.00 4.46
2064 2149 4.016706 CCGGCGACCCAAGGAAGT 62.017 66.667 9.30 0.00 0.00 3.01
2186 2272 0.974010 ATACCGACGCCTCCAAGGAA 60.974 55.000 0.00 0.00 37.67 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.