AutoCloner

Multiple sequence alignment - TraesCS2D01G212300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G212300	chr2D	100.000	2225	0	0	1	2225	170608150	170605926	0.000000e+00	4109
1	TraesCS2D01G212300	chr2D	99.273	275	2	0	162	436	648643074	648643348	4.270000e-137	497
2	TraesCS2D01G212300	chr2B	89.310	1768	66	46	535	2225	226705777	226707498	0.000000e+00	2104
3	TraesCS2D01G212300	chr2B	85.579	527	62	13	19	536	179054309	179053788	6.990000e-150	540
4	TraesCS2D01G212300	chr2B	86.139	101	13	1	446	545	252416328	252416428	8.400000e-20	108
5	TraesCS2D01G212300	chr2A	86.983	484	41	16	1760	2225	179303606	179304085	1.960000e-145	525
6	TraesCS2D01G212300	chr2A	93.093	333	10	2	912	1235	179303044	179303372	2.000000e-130	475
7	TraesCS2D01G212300	chr2A	95.053	283	9	4	536	814	179302559	179302840	7.290000e-120	440
8	TraesCS2D01G212300	chr1D	98.909	275	3	0	162	436	405382400	405382674	1.990000e-135	492
9	TraesCS2D01G212300	chr1D	78.388	546	75	27	7	535	196612448	196611929	4.610000e-82	315
10	TraesCS2D01G212300	chr7D	98.905	274	3	0	163	436	38661946	38661673	7.140000e-135	490
11	TraesCS2D01G212300	chr7D	85.096	208	21	8	1	203	505594661	505594863	1.040000e-48	204
12	TraesCS2D01G212300	chr7D	85.789	190	19	7	1	187	236330381	236330565	6.270000e-46	195
13	TraesCS2D01G212300	chrUn	98.201	278	5	0	162	439	68214722	68214445	9.240000e-134	486
14	TraesCS2D01G212300	chrUn	92.903	155	9	2	1	154	104800608	104800455	8.000000e-55	224
15	TraesCS2D01G212300	chr3D	98.201	278	5	0	162	439	83890888	83890611	9.240000e-134	486
16	TraesCS2D01G212300	chr3D	92.079	101	7	1	438	537	138215630	138215530	8.280000e-30	141
17	TraesCS2D01G212300	chr5D	98.201	278	4	1	160	436	416871370	416871647	3.320000e-133	484
18	TraesCS2D01G212300	chr5D	78.731	536	65	32	32	537	331975970	331976486	1.660000e-81	313
19	TraesCS2D01G212300	chr5D	79.707	409	54	22	19	407	211650028	211650427	3.640000e-68	268
20	TraesCS2D01G212300	chr5D	92.000	100	7	1	439	537	313138360	313138459	2.980000e-29	139
21	TraesCS2D01G212300	chr1A	83.156	564	61	16	1	534	20763274	20763833	3.320000e-133	484
22	TraesCS2D01G212300	chr5B	84.069	521	52	8	21	519	495582277	495581766	7.190000e-130	473
23	TraesCS2D01G212300	chr5B	92.208	154	10	2	1	154	407636029	407636180	1.340000e-52	217
24	TraesCS2D01G212300	chr4B	78.481	553	78	30	7	537	115414242	115413709	7.660000e-85	324
25	TraesCS2D01G212300	chr3B	80.150	267	29	16	281	537	133479568	133479820	6.310000e-41	178
26	TraesCS2D01G212300	chr4D	93.878	98	5	1	439	535	399775903	399776000	1.780000e-31	147
27	TraesCS2D01G212300	chr4D	92.079	101	7	1	439	538	18773472	18773372	8.280000e-30	141
28	TraesCS2D01G212300	chr6A	91.429	105	7	2	439	541	141840783	141840679	2.300000e-30	143
29	TraesCS2D01G212300	chr5A	92.079	101	7	1	438	537	538850774	538850674	8.280000e-30	141
30	TraesCS2D01G212300	chr7B	90.196	102	10	0	1646	1747	119196636	119196535	1.390000e-27	134

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G212300	chr2D	170605926	170608150	2224	True	4109	4109	100.000000	1	2225	1	chr2D.!!$R1	2224
1	TraesCS2D01G212300	chr2B	226705777	226707498	1721	False	2104	2104	89.310000	535	2225	1	chr2B.!!$F1	1690
2	TraesCS2D01G212300	chr2B	179053788	179054309	521	True	540	540	85.579000	19	536	1	chr2B.!!$R1	517
3	TraesCS2D01G212300	chr2A	179302559	179304085	1526	False	480	525	91.709667	536	2225	3	chr2A.!!$F1	1689
4	TraesCS2D01G212300	chr1D	196611929	196612448	519	True	315	315	78.388000	7	535	1	chr1D.!!$R1	528
5	TraesCS2D01G212300	chr5D	331975970	331976486	516	False	313	313	78.731000	32	537	1	chr5D.!!$F3	505
6	TraesCS2D01G212300	chr1A	20763274	20763833	559	False	484	484	83.156000	1	534	1	chr1A.!!$F1	533
7	TraesCS2D01G212300	chr5B	495581766	495582277	511	True	473	473	84.069000	21	519	1	chr5B.!!$R1	498
8	TraesCS2D01G212300	chr4B	115413709	115414242	533	True	324	324	78.481000	7	537	1	chr4B.!!$R1	530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
909	1001	0.32121	TATTGCACTGTCCACCACCG	60.321	55.0	0.0	0.0	0.0	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2163	2443	0.248843	TGTCCTCGTATGCATGCACA	59.751	50.0	25.37	9.23	0.0	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
157	168	7.050970	TGTGTGATGTTACTCATACTATCCC	57.949	40.000	10.75	0.00	37.92	3.85
158	169	6.839134	TGTGTGATGTTACTCATACTATCCCT	59.161	38.462	10.75	0.00	37.92	4.20
160	171	7.653713	GTGTGATGTTACTCATACTATCCCTTG	59.346	40.741	5.15	0.00	36.83	3.61
161	172	7.344612	TGTGATGTTACTCATACTATCCCTTGT	59.655	37.037	0.00	0.00	36.83	3.16
258	275	8.453238	TGAGTTAATGAGGAGAGATGTAGTAC	57.547	38.462	0.00	0.00	0.00	2.73
317	350	6.873605	TCCCAATGCAATATGAGTCTATAACG	59.126	38.462	0.00	0.00	0.00	3.18
367	400	7.181485	ACCACACTTATGTTACTACCCACTATT	59.819	37.037	0.00	0.00	36.72	1.73
384	417	6.151985	CCCACTATTGAGGTAGTAGCATAGAG	59.848	46.154	10.53	4.76	33.29	2.43
436	469	1.480954	ACTACCCATTGTGGCTAGTCG	59.519	52.381	0.00	0.00	35.79	4.18
452	508	4.036498	GCTAGTCGTACATGCCTCTCTTTA	59.964	45.833	0.00	0.00	0.00	1.85
485	545	6.135290	TGCTTGCCACATCATCTATTTTAC	57.865	37.500	0.00	0.00	0.00	2.01
540	603	5.421056	ACTTCATCGTGGATAGTCTAAACCA	59.579	40.000	5.41	5.41	0.00	3.67
609	672	2.202946	TTGCTCCGTCGCACACAA	60.203	55.556	0.00	0.00	40.09	3.33
712	782	2.735772	ATCAATGCCGTCCTCGCCT	61.736	57.895	0.00	0.00	35.54	5.52
738	808	1.036092	AAATCCCTCCTCCTACCCCT	58.964	55.000	0.00	0.00	0.00	4.79
909	1001	0.321210	TATTGCACTGTCCACCACCG	60.321	55.000	0.00	0.00	0.00	4.94
940	1136	3.285371	TCTCCGGCGAGAGTTTCC	58.715	61.111	19.81	0.00	40.34	3.13
956	1152	5.411669	AGAGTTTCCGCGATATTTGTTTCTT	59.588	36.000	8.23	0.00	0.00	2.52
957	1153	6.009115	AGTTTCCGCGATATTTGTTTCTTT	57.991	33.333	8.23	0.00	0.00	2.52
958	1154	6.084277	AGTTTCCGCGATATTTGTTTCTTTC	58.916	36.000	8.23	0.00	0.00	2.62
959	1155	4.609691	TCCGCGATATTTGTTTCTTTCC	57.390	40.909	8.23	0.00	0.00	3.13
960	1156	4.004314	TCCGCGATATTTGTTTCTTTCCA	58.996	39.130	8.23	0.00	0.00	3.53
966	1162	6.092807	GCGATATTTGTTTCTTTCCAGAGAGT	59.907	38.462	0.00	0.00	0.00	3.24
1307	1512	1.366366	CACGTCCCGTTTCCTGACT	59.634	57.895	0.00	0.00	38.32	3.41
1309	1514	1.111116	ACGTCCCGTTTCCTGACTGA	61.111	55.000	0.00	0.00	36.35	3.41
1313	1518	2.027625	CCGTTTCCTGACTGACGGC	61.028	63.158	0.54	0.00	46.93	5.68
1314	1519	2.027625	CGTTTCCTGACTGACGGCC	61.028	63.158	0.00	0.00	32.29	6.13
1316	1521	3.234630	TTTCCTGACTGACGGCCGG	62.235	63.158	31.76	14.78	0.00	6.13
1385	1594	2.460757	ATTTGTGTTTCAGGCATGCC	57.539	45.000	30.12	30.12	0.00	4.40
1415	1624	3.674997	TGAGCTTGGAGATTGTTACACC	58.325	45.455	0.00	0.00	0.00	4.16
1450	1659	7.503230	TCTTGTGGTCTTATGTACATATACGGA	59.497	37.037	16.16	9.54	33.60	4.69
1471	1680	4.202367	GGAGTAGTATTATGCAAGGTGGCT	60.202	45.833	0.00	0.00	34.04	4.75
1520	1729	3.438360	CGAAATAAGGTTGCATTGCCTC	58.562	45.455	6.12	0.00	33.24	4.70
1530	1739	1.005340	GCATTGCCTCGTCTTCTCAG	58.995	55.000	0.00	0.00	0.00	3.35
1543	1752	1.663643	CTTCTCAGTCTCCGTCGAGAG	59.336	57.143	0.00	0.00	45.93	3.20
1572	1781	1.537202	CTGAGAAAGGGTTTTGCTCCG	59.463	52.381	0.00	0.00	0.00	4.63
1607	1818	2.224281	TGCCGGCTCCTCTGTTTATATG	60.224	50.000	29.70	0.00	0.00	1.78
1652	1881	4.074970	CCACAATCAGGAGCTAACAAACT	58.925	43.478	0.00	0.00	0.00	2.66
1702	1931	4.276183	CGCAAGTCTAGCTAACTATCTGGA	59.724	45.833	8.41	0.00	0.00	3.86
1703	1932	5.525199	GCAAGTCTAGCTAACTATCTGGAC	58.475	45.833	8.41	3.89	39.96	4.02
1705	1934	6.514376	GCAAGTCTAGCTAACTATCTGGACTC	60.514	46.154	8.35	0.00	46.07	3.36
1717	1946	7.523293	ACTATCTGGACTCTCTACATCATTG	57.477	40.000	0.00	0.00	0.00	2.82
1730	1962	4.430137	ACATCATTGTCTGCACAACATC	57.570	40.909	0.00	0.00	45.47	3.06
1732	1964	5.247862	ACATCATTGTCTGCACAACATCTA	58.752	37.500	0.00	0.00	45.47	1.98
1792	2033	1.836166	CTCATGCAAGAGAGAAGGGGA	59.164	52.381	13.68	0.00	37.87	4.81
1824	2066	9.039870	GTCAGAATCTTGTTATCCATCACTAAG	57.960	37.037	0.00	0.00	0.00	2.18
1839	2090	6.096987	CCATCACTAAGTAGCTCCTCTTGTAA	59.903	42.308	0.00	0.00	0.00	2.41
1927	2188	8.375465	CACACTTTTCATCTTTCTTTGTTGTTC	58.625	33.333	0.00	0.00	0.00	3.18
1941	2202	5.811399	TTGTTGTTCGAGAAAATCACACT	57.189	34.783	0.00	0.00	0.00	3.55
2006	2274	4.752661	TTTCGAAATAAACAAGACGGGG	57.247	40.909	6.47	0.00	0.00	5.73
2102	2375	1.379044	CGCTGGAGGGGAAAGCAAT	60.379	57.895	0.00	0.00	36.73	3.56
2105	2378	1.685148	CTGGAGGGGAAAGCAATAGC	58.315	55.000	0.00	0.00	42.56	2.97
2146	2426	2.203280	CAGGCCGACCACCAACAA	60.203	61.111	0.00	0.00	39.06	2.83
2147	2427	2.113139	AGGCCGACCACCAACAAG	59.887	61.111	0.00	0.00	39.06	3.16
2150	2430	1.525077	GCCGACCACCAACAAGTGA	60.525	57.895	0.00	0.00	40.34	3.41
2160	2440	4.539870	CACCAACAAGTGAGCATTAACTG	58.460	43.478	0.00	0.00	40.34	3.16
2161	2441	7.999153	CCACCAACAAGTGAGCATTAACTGC	62.999	48.000	0.00	2.73	41.93	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	9.203163	AGGCATGTTACTAGTCTAAATTACTCT	57.797	33.333	0.00	0.00	0.00	3.24
65	68	8.670135	GCATGTTACCACACATAATGTTACTTA	58.330	33.333	0.00	0.00	40.64	2.24
66	69	7.175816	TGCATGTTACCACACATAATGTTACTT	59.824	33.333	0.00	0.00	40.64	2.24
124	130	6.946340	TGAGTAACATCACACATATCAAGGT	58.054	36.000	0.00	0.00	0.00	3.50
155	166	2.093973	CACTGTGGCTAGTCTACAAGGG	60.094	54.545	0.00	0.00	35.68	3.95
156	167	2.093973	CCACTGTGGCTAGTCTACAAGG	60.094	54.545	14.87	2.44	35.68	3.61
157	168	2.093973	CCCACTGTGGCTAGTCTACAAG	60.094	54.545	21.47	0.00	35.68	3.16
158	169	1.899814	CCCACTGTGGCTAGTCTACAA	59.100	52.381	21.47	0.00	35.68	2.41
160	171	1.751924	CTCCCACTGTGGCTAGTCTAC	59.248	57.143	21.47	0.00	35.79	2.59
161	172	1.358103	ACTCCCACTGTGGCTAGTCTA	59.642	52.381	21.47	0.00	35.79	2.59
317	350	8.807581	GGTAACATGCAAAGCTTCATTTATTAC	58.192	33.333	0.00	8.32	0.00	1.89
367	400	7.799081	TGTTACTACTCTATGCTACTACCTCA	58.201	38.462	0.00	0.00	0.00	3.86
377	410	4.336889	TGCCCATGTTACTACTCTATGC	57.663	45.455	0.00	0.00	0.00	3.14
452	508	8.426489	AGATGATGTGGCAAGCAATAAATAAAT	58.574	29.630	0.00	0.00	0.00	1.40
513	575	8.142551	GGTTTAGACTATCCACGATGAAGTAAT	58.857	37.037	0.00	0.00	0.00	1.89
523	586	4.571919	TGGTTTGGTTTAGACTATCCACG	58.428	43.478	6.46	0.00	0.00	4.94
609	672	5.403246	CGTATGCTTCTTGACTAAGTCTGT	58.597	41.667	0.00	0.00	35.38	3.41
712	782	1.129058	GGAGGAGGGATTTAAGGCGA	58.871	55.000	0.00	0.00	0.00	5.54
738	808	2.271493	GATGGAGGGAGGGAGGGGAA	62.271	65.000	0.00	0.00	0.00	3.97
909	1001	1.808945	CCGGAGATATTTGATGCTGGC	59.191	52.381	0.00	0.00	0.00	4.85
936	1132	5.048643	TGGAAAGAAACAAATATCGCGGAAA	60.049	36.000	6.13	0.00	0.00	3.13
940	1136	5.063438	TCTCTGGAAAGAAACAAATATCGCG	59.937	40.000	0.00	0.00	0.00	5.87
956	1152	1.724545	TCCCGGAAAACTCTCTGGAA	58.275	50.000	0.73	0.00	43.68	3.53
957	1153	1.623811	CTTCCCGGAAAACTCTCTGGA	59.376	52.381	0.73	0.00	43.68	3.86
958	1154	1.339151	CCTTCCCGGAAAACTCTCTGG	60.339	57.143	0.73	0.00	41.03	3.86
959	1155	1.339151	CCCTTCCCGGAAAACTCTCTG	60.339	57.143	0.73	0.00	33.16	3.35
960	1156	0.984995	CCCTTCCCGGAAAACTCTCT	59.015	55.000	0.73	0.00	33.16	3.10
966	1162	2.235761	CCTCCCCCTTCCCGGAAAA	61.236	63.158	0.73	0.00	33.16	2.29
969	1165	4.089757	CTCCTCCCCCTTCCCGGA	62.090	72.222	0.73	0.00	33.16	5.14
1238	1443	2.052414	GCGCGCAGATCAATCAGC	60.052	61.111	29.10	0.00	36.16	4.26
1239	1444	2.244669	CGCGCGCAGATCAATCAG	59.755	61.111	32.61	6.38	0.00	2.90
1240	1445	3.928769	GCGCGCGCAGATCAATCA	61.929	61.111	46.11	0.00	41.49	2.57
1274	1479	4.699522	GTGGGTGGAGACGGTGGC	62.700	72.222	0.00	0.00	0.00	5.01
1275	1480	4.373116	CGTGGGTGGAGACGGTGG	62.373	72.222	0.00	0.00	31.84	4.61
1276	1481	3.569049	GACGTGGGTGGAGACGGTG	62.569	68.421	0.00	0.00	39.94	4.94
1314	1519	2.735772	ATACAGGCAGGCTCCACCG	61.736	63.158	0.00	0.00	46.52	4.94
1316	1521	0.745845	CACATACAGGCAGGCTCCAC	60.746	60.000	0.00	0.00	0.00	4.02
1327	1533	6.727824	AACAAAACTAGCTAGCACATACAG	57.272	37.500	20.91	6.25	0.00	2.74
1411	1620	1.340017	CCACAAGAATCCATCCGGTGT	60.340	52.381	0.00	0.00	33.16	4.16
1415	1624	2.698855	AGACCACAAGAATCCATCCG	57.301	50.000	0.00	0.00	0.00	4.18
1450	1659	5.602978	ACTAGCCACCTTGCATAATACTACT	59.397	40.000	0.00	0.00	0.00	2.57
1459	1668	1.630369	TCAAGACTAGCCACCTTGCAT	59.370	47.619	0.00	0.00	37.71	3.96
1501	1710	2.825532	ACGAGGCAATGCAACCTTATTT	59.174	40.909	7.79	0.00	36.05	1.40
1502	1711	2.423538	GACGAGGCAATGCAACCTTATT	59.576	45.455	7.79	0.00	36.05	1.40
1503	1712	2.017049	GACGAGGCAATGCAACCTTAT	58.983	47.619	7.79	0.27	36.05	1.73
1504	1713	1.003118	AGACGAGGCAATGCAACCTTA	59.997	47.619	7.79	0.00	36.05	2.69
1520	1729	0.095589	CGACGGAGACTGAGAAGACG	59.904	60.000	0.00	0.00	0.00	4.18
1530	1739	3.549299	TTTTACACTCTCGACGGAGAC	57.451	47.619	16.88	0.00	44.28	3.36
1543	1752	6.035650	GCAAAACCCTTTCTCAGTTTTTACAC	59.964	38.462	0.00	0.00	40.69	2.90
1572	1781	0.944386	CCGGCACCTATTGTATGCAC	59.056	55.000	0.00	0.00	41.27	4.57
1607	1818	2.247311	CAACAACCTCGTTGCTATGC	57.753	50.000	4.46	0.00	46.20	3.14
1652	1881	7.994425	TCAAGTTGTAAAGCCATAAGATTCA	57.006	32.000	2.11	0.00	0.00	2.57
1684	1913	6.531021	AGAGAGTCCAGATAGTTAGCTAGAC	58.469	44.000	0.00	0.00	0.00	2.59
1686	1915	7.446769	TGTAGAGAGTCCAGATAGTTAGCTAG	58.553	42.308	0.00	0.00	0.00	3.42
1687	1916	7.376335	TGTAGAGAGTCCAGATAGTTAGCTA	57.624	40.000	0.00	0.00	0.00	3.32
1689	1918	6.712998	TGATGTAGAGAGTCCAGATAGTTAGC	59.287	42.308	0.00	0.00	0.00	3.09
1691	1920	9.072375	CAATGATGTAGAGAGTCCAGATAGTTA	57.928	37.037	0.00	0.00	0.00	2.24
1692	1921	7.563188	ACAATGATGTAGAGAGTCCAGATAGTT	59.437	37.037	0.00	0.00	38.24	2.24
1694	1923	7.448161	AGACAATGATGTAGAGAGTCCAGATAG	59.552	40.741	0.00	0.00	40.74	2.08
1695	1924	7.230309	CAGACAATGATGTAGAGAGTCCAGATA	59.770	40.741	0.00	0.00	40.74	1.98
1696	1925	6.040729	CAGACAATGATGTAGAGAGTCCAGAT	59.959	42.308	0.00	0.00	40.74	2.90
1697	1926	5.359292	CAGACAATGATGTAGAGAGTCCAGA	59.641	44.000	0.00	0.00	40.74	3.86
1699	1928	4.142071	GCAGACAATGATGTAGAGAGTCCA	60.142	45.833	0.00	0.00	40.74	4.02
1700	1929	4.142071	TGCAGACAATGATGTAGAGAGTCC	60.142	45.833	0.00	0.00	40.74	3.85
1702	1931	4.221482	TGTGCAGACAATGATGTAGAGAGT	59.779	41.667	0.00	0.00	40.74	3.24
1703	1932	4.752146	TGTGCAGACAATGATGTAGAGAG	58.248	43.478	0.00	0.00	40.74	3.20
1704	1933	4.806640	TGTGCAGACAATGATGTAGAGA	57.193	40.909	0.00	0.00	40.74	3.10
1705	1934	4.692155	TGTTGTGCAGACAATGATGTAGAG	59.308	41.667	0.54	0.00	43.95	2.43
1717	1946	2.404215	ACGTGTAGATGTTGTGCAGAC	58.596	47.619	0.00	0.00	0.00	3.51
1730	1962	5.571784	TGGGTCTGTTAAGATACGTGTAG	57.428	43.478	0.00	0.00	34.13	2.74
1732	1964	5.068723	CCTATGGGTCTGTTAAGATACGTGT	59.931	44.000	0.00	0.00	34.13	4.49
1792	2033	7.009179	TGGATAACAAGATTCTGACACTTCT	57.991	36.000	0.00	0.00	0.00	2.85
1839	2090	5.551305	TGTATGAACAGCCATGCTACTAT	57.449	39.130	0.00	0.00	36.40	2.12
1895	2151	6.625873	AGAAAGATGAAAAGTGTGAGGAAC	57.374	37.500	0.00	0.00	0.00	3.62
1927	2188	6.794158	GTCAGATGAAAAGTGTGATTTTCTCG	59.206	38.462	11.82	5.75	45.36	4.04
1941	2202	2.978156	AGGGCCTTGTCAGATGAAAA	57.022	45.000	0.00	0.00	0.00	2.29
2006	2274	3.241701	CAACAACGCCACACAAATATCC	58.758	45.455	0.00	0.00	0.00	2.59
2076	2344	2.434331	CCCTCCAGCGGACCAAAA	59.566	61.111	0.00	0.00	0.00	2.44
2102	2375	4.099573	TGGGGTTTCAATTTTCAAACGCTA	59.900	37.500	15.47	10.30	42.27	4.26
2105	2378	4.213059	CCATGGGGTTTCAATTTTCAAACG	59.787	41.667	2.85	0.00	33.94	3.60
2106	2379	4.023279	GCCATGGGGTTTCAATTTTCAAAC	60.023	41.667	15.13	0.00	36.17	2.93
2161	2441	1.262417	GTCCTCGTATGCATGCACATG	59.738	52.381	25.37	18.33	41.60	3.21
2162	2442	1.134431	TGTCCTCGTATGCATGCACAT	60.134	47.619	25.37	11.24	0.00	3.21
2163	2443	0.248843	TGTCCTCGTATGCATGCACA	59.751	50.000	25.37	9.23	0.00	4.57
2164	2444	1.586422	ATGTCCTCGTATGCATGCAC	58.414	50.000	25.37	10.68	0.00	4.57
2165	2445	3.328505	CATATGTCCTCGTATGCATGCA	58.671	45.455	25.04	25.04	36.94	3.96
2166	2446	2.674852	CCATATGTCCTCGTATGCATGC	59.325	50.000	11.82	11.82	40.35	4.06
2167	2447	2.674852	GCCATATGTCCTCGTATGCATG	59.325	50.000	10.16	0.00	40.35	4.06
2168	2448	2.302733	TGCCATATGTCCTCGTATGCAT	59.697	45.455	3.79	3.79	40.35	3.96
2169	2449	1.691434	TGCCATATGTCCTCGTATGCA	59.309	47.619	1.24	0.00	40.35	3.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.