>input_sequence_86530
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----ATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGGCGGGGATCTGCTCGC
GGTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACCGTGCACCGCGTCACC
TGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACAGGCTCTACTAG-----------
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>chr2D_1_TraesCS2D01G212300
ATGGAGAGTAATTTAGACTAGTAACATGCCTA--TGTTACTAGTCAATATTACTACCTCTATAGTGGTAAGTAACAT-TA
TGTGTGGTAACATGC--AACACTTTATTTATTAGGCTATAGACTTATTTA-CCTTGATATG----TGTGATGTTACTCAT
ACTATCCCTTGT------AGACTAGCCACAGTGGGAGTAACTTCGGTAGTAACATCGAGTCCAACTCAGCAATTTTGCTT
ATGTGGCAATGAGTTAATGAGGAGAGATGTAGTAC--TAGTAACTTAGCTAGTTACT----------G----TAACATCA
CATGTCCCAATGCAATATGAGTCTATAACGTAATAAATGAAGCTTTGCATGTTACCACACTTATGTTACTACCCACTATT
GAGGTAGTAGCATAGAGTAGTAACATGGGCATGTTACTATTCTATGTTACTACCCATTGTGGCTAGTCG-----------
------------TACATGCCTCTCTTTATTTATTTATTGCTTGCCACATCATCTAT----TTTACCTAGATAT--GTGTG
ATGTTACTATCTATATTACTT-CATCGTGGATAGTCTAAACCAAACCAGTGGTCTGTGCCTGCCTGTTTTTGTCTACCCC
GTGCGTACGTATACTTGCTCCGTCGCACACAACAGA-------CTTAGTCAAGAAGCATACGCTTGGCAGGGACGACATT
ATGGCCACCCCTAACCGCCACCTTCCCCACCACCGTGAGCGCCATCAATGCCGTCCTCGCCTCGCCTTAAATCCCTCCTC
CTACCCCTTC----CCCTCCCTCCCTCCAT----------------CGCACATTGCCTGCTTACTGGCTCCCCGCCATTG
CTGACCAGTGACCGCAACCACCACCTTCCTGCCACTATATATATACCC--CGCGCGCGCTGACGCAGTGACAAATCGCAC
GGGCGGCGCGCGGCTTAGCTGTATTGCACTGTCCACCACCGC--------------------------------------
------------------------------------------------------------------CAGCATCAAATATC
TCCGGCGAGAGTTTCCGCGATATTTGTTTCTTTCCAGAGAGTTTTCCGGGAAGGGGGAGGAGGAGGA---------GCGG
CGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGGCGGGGATCTGCTCGC
GGTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACCGTGCACCGCGTCACC
TGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACAGGCTCTACTAGGCCGGCGGCCG
ACGCTGATTGATCTGCGCGCGCGACGGACGGCCGGCCGGCCACCGTCTCCACCCACGTCCCGTTTCCTGACTGACGGCCG
G-TGGAGCCTGCCTGTATGTGCTAGCTAGTTTTGTTTGCTCGATCTGCTTA---ATTTGTGTTTCAGGCATGCCCTCTAG
CTTGAGCTTGGAGATTGTTACACCGGATGGATTCTTGTGGTCTTATGTACATATACGGAGTAGTATTATGCAAGGTGGCT
AGTCTTGATTAGTTATTTAATTTCCTCCGAAATAAGGTTGCATTGCCTCGTCTTCTCAGTCTCCGTCGAGAGTGTAAAAA
CTGAGAAAGGGTTTTGCTCCG--TGCATACAATAGGTGCCGGCTCCTCTGTTTATATG----CATAGCAACGAGGTTGTT
GCGTCCACAATCAGGAGCTAAC--------------AAACTGAATCTTATGGCTTTACAACTTGATACGCAAGTCTAGCT
AACTATCTGGACTCTCTACATCATTG---TCTGCACAACATCTACACGTATCTTAACAGACCCATAGGATTAGT------
---TAGTAGGATCTCATGCAAGAGAGAAGGGGAGAAGTGTCAGAATC-TTGTTATCCATCACTAAGTAGCTCCTCTTG--
-------TAATAGTAGCATGGCTGTTCATACATTTCCCCTCTCCTCTCCACGGCATTAACGTGTG-----GTTCCTCACA
CTTTTCATCTTTC-----TTTGTTGTTCGAGAAAATCACACTTTTCATCTGACAAGGCCCTATTGTCTGCTACTACTATG
AGA------TATTTCGAAATAAACAAG-ACGGGGGATATTTGTGTGGCGTTGTTGTTAAAATTTGTTCTGTCAATTCCTG
CGATCTTTTTTATTCTGTCAAAATTTTGGTCCGCTGGAGGGGAAAGCA-----ATAGCGTTTGAAAATTGAAACCCCATG
GCAGGCCGACCACCAA-------CAAGTGAGCATTAACTGCATGTGCATGCATACGAGGACATATGGCACATGGATGTGG
ACAGCCCATACCAAACTACTCCTA--
>chr1A_1
ATGGGTAGTAACATAGACTAGTAACATGCCCATGTGTTACTAGTCTATGTTACTACCTCTATAGTAGGGAGTAACATATA
TGTGTGGTAACATGC--AACACTTCATTTATTAGGCTATAGACACATCTTGCCTTGATATGTACATGTGATGTTACTCAT
ACTACT--------AGTAAGACTAGCCACAGTGGGAGTAACTTCAGCAGTAACATGGAGTCCACCTCAGCAAATTTGCTT
ATGTGGCAATGAGTTTACGAGGAGAGAGGTAGTTTG--AGTAACTTAGCTAGTTACT----------G----TAACATCA
CATGTCCCAATACAATATGAATCTATAACCTGATAAATGTAGCTTTGCATGACACCACACTTATACTACTACCCACAGTG
AGCGTAGTAACATAGTCTAGGAATATGTGTATGTTACTAGTGTACGTTACCCTCCATTGTGGCTAGCCTAACT-------
-AGCCATGTTATTAATTTCCTCTCTTTCTTCATTTATTGCTTGCCATATCATCTAAGTAATTTATCTAGATAT--GTGTG
ATGTTACTACCAATGTTACTCCCATTGTGGGTAGTC--------------------------------------------
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>chr1D_7
------AGTAACATAGATTAGTAACATGCACA--TGTTACTAGTCTATGTTGCTACCTCTATAGTGGGGAGTAACAT--A
TCTGA--TAACATGC--AACACTTCATTTATTAGGTTATAGACTCATTTTGCCTTGATATG----TGTGATGTTACTCAT
ACTACT--------AGTAAGACTACCCACAGTGGGAGTAACATAGGTAGTAACATCACACATATCTAGATAAAATAGATG
ATGTGGCAAGTAATAAATGAAAAAAAAGACAT----GTAGTAACATAACTAGTTACTACTAGTATGAG----TAACATCA
CACATATCAAGATAAAATGTGTCTAT-GCCTAATAAATGAAGTGCTCCATGTTACCACACATATGTTACTTCCCACTATA
AAGATAATAACATAGACTAGTAATATGGGCATGTTACTAGTATATGTTACTACCCATTGTCATTCA--------------
------------------------TTTCTTTATTTATTGCTTGCCACATCATCTAT----TTTATCTAGATATATGGGTG
ATGTTATTATTTATGTTACTCCCATTGTGGATAGTCT-------------------------------------------
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>chr4B_7
------AGTAACATAGAGTAGTAACATGCTCA--TGTTACTACTCTATGTTACTACCTCTATAGTGGGGAGTAACAT--A
TGTGTGGTAACATGC--AATACTTTATTTATTATGCTATAGACTCATCTTGCCTTGATATG----TGTGATGTTACGCAT
ACAAGT--------ATTAAGGCTAGTCATAGTGGGAGTAACTTAGCTAGTAACATAGCGCACTTCAAGAAATTTTTGCTT
ATGTGGCAAGTATTTAATGTG-------------AGGTGGTAACATAATATGTTACT----------G----TAACATAG
CACTTCCCAAGACAAGATGAGTCTACAAGCTAATAAATGAAGCTATCTATGACACTACTATCATGTTACTTTGCATTATG
AAAGTAGTAACTTAGACTAGTGTCATGCATATGACACTAGTCTAAGTTACTCCCCACTATGACGAGCCTAACT-------
-AGTTATGTTACTACATGCCTCTCTTTCTTCATTTATTGCTTGCCACATCATCTAT----TTTATCTAGATAT--GTGTG
ATGTTACTACCTATGTTACTTCCATTGTGGGTAGTCTAA-----------------------------------------
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>chr2B_19
------------------TAGTAACATGCATA--TGTTACTGGTCTATGTTACTACCTCTATAGCGGGGAGTAACAT--A
TGTGTGGTAACATGC--AACACTTCATTTATTAGGCTATAGACTCATCTTGCCTTGATATG----TGTGATGTTACTCAT
ATTACT--------AGTAAGACGAGCCACAGTGGGAGTAATTTCATTAGTAACATCGAGTCCAACTCAGCAAAATTGCTT
ATGTGGCAATGAGTTAATGAGGAAAGATATAGTTA--TAGTAACTTAGCTAGTTACT----------G----TAACATCA
CATGTCTCAATTCAATATGAGTCTATAACCTAATAAATGAAGCTTTGCGTGTTACCACACTTATGTTACTACCCACTATG
AAGGTAGTAACATAGTCTAGGGATATGGGTATGTTACTAGTGA----------CCATTGTGGCTAGTCTAACT-------
-AGCTATGTTACCACTTTCCTTTCTTTCTTCATTTATTGCTTGCCACATCATCTAT----TTTATTTGGTTAT--GTGTG
ATGTTAATACCTATGTTACTCCCATTGTGGGTAGTCTA------------------------------------------
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>chr5B_21
--------------------GTAACATGCCCA--TGTTACTATTCCATGTTACTACCTCTAGAGTGGGGAGTAACAT--A
TGTGTGGTAACATGCGCAACACTTCATTTCTAAAGCTATAGACTCATTTTGCCTTGATATG----TGTGATGTTACTCAT
ACTATT--------AG----AGTAGCCACAATGGGAGTAACTTCAGCAGTAACATCAAGTCCAACTAAGCAAATATGCTT
ATGTGGCAATGAGTTAATGAGGAGAG--GTAGTTTG--AGTAACTTAGCTAGTTACC----------G----TAACATCA
CATGTCTCAATGCACTATGAGTCTATAACCTAATAAATGAAGCTTTGAATGACACCACACTTATGTTACTACCCACTATG
AAGGTAGTAACATAGTCTAGGGATATGTGTATGTTACTAGTGTATGTTACTATGCACTATGGCTAGTCTTAATTAGTATC
AAGCTATGTTAC----TGCCTCTCTTTCTTCATTTATTGCTTGCCACATCATCTAT----TTTATCTAGATAT--GTGTG
ATGTTACTACCTATGTTACT------------------------------------------------------------
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>chr5D_32
-------------------------------A--TGTTACTAATCTATGTTACTGCATCTATAGTGGGGAGTAACAT--A
TGTGTAGTAACATGC--AACACTTCATTTATTAGGCTATAGACTCATCTTGCCTTGAGATG----TGTGATGTTACTCAT
ACTACTAGCTAGTAAG----ACTACCCACAGTGGGAGTAACATAGGTAGTAACATCACACATATCTAGATAAAATAGATG
ATGTGGCAAGCAATAAATGAAGAAAT--GGAGGAAAGTGGTAATATAGCTAGTTACTAGTAGTATGAGTAATTAACATCA
CACATATCAAGGCAAAATGAGTCTATAGCCTAATAAATGAAGTGTTGCATGTTACCACACATATGTTACTCCCCACTATA
GAGGTAGTAACATAGACTAGTAGC--------------ATTCTATGTTACTACCCATTGTGGCC-------CT-------
-AGCTATGTTACCACTTTCCTCTCTTTCTTCATTTATTGCTTGCCACATCATCTAT----TTTATCTAGATAC--GTGTG
ATGTTACTACCTATGTTATTCCCACTGTGGGTAGTCTAA-----------------------------------------
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>chr2B_535
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------------------------------------TAAACCGAAGCAGTGGTCTGTGCCTGCCTGTTTTTGTCTACCCC
GTGCGTACGTATGCTTGCTGCGTCGCACACAGCAGAGAGCAGACTTAGTCAAGAAGCATACGCTTGGCAGGGACGACATT
ATGGCCACCCCTAACCGCCACCTTCCCCACCACCGTGAGCGCCATCAATGCCGTCCTCGCCCGGCCTTAAATCCCTCCTC
CTA------------CCTCCGTCCATCCATCACAGATCACACCGCCCGCACATTGCCTGCTTACTGGCTCCCCGCCATTG
CTGACCAGTGACCGCAACCACCACCTTCCTGCCACTATATATATACCCCGCGCGCGCGCTGACGCAGTGACAAATCGCAC
GGGCGGCGCGCGGCTTAGCTGTATTGCACTGTCCACCACCAC--------------------------------------
------------------------------------------------------------------CAGCATCAAATATC
TCCGGCGAGAGCTTCAGCGATATTTGTTTCTG----GAGAGCTTGCCGGGAAGGAGGAGGAGGAGGAGGA---GCGGCGG
CGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGGCGGGGATCTGCTCGC
GGTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACCGTGCACCGCGTCACC
TGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACAGGCTCTACTAGACCGGC-----
-----GATTGATCTGCGCGCGCGACGGA---------------CGTCTCCACCCGCGTCCCGTTTCCTGACGGCCGGTGG
ACTGGAGCCTGCATGTATGTGCTAGCTAGTTTTGTTTGCTCGATCTGCTTATTAATTTGTGTTTCAGGCATGCTCTCTAG
CTTGAGCTTGGAGATTGTTGCAC----TGGATTCTTGTGGTCTTATGTACATATACGGGGTAGTATTCTGCAAGGTGGCA
AGTCTTGATTAGTTATTTAATTTCCTCCG----AAGGTTGCATTGCCTTGTCTTCTCACTCTCCGTCGAGACTGTAAAAA
CTGAGAAAGGGTTTTGCTCCTATTGCATACAATAGGTGCCGGCTCCTCTGTTTATATATGCACATAGCAACGAGGTTGTT
GCGTCCACAATCAGGAGCTAACAACCAGATTACAACAAACAGAATCTTATGGCTTTACAACTTGATACGCAACTGAATCA
TATGCGCAAG----TCTACATCATTAGTATCTGCACAACATATGCACGTATCTTAACAGACCCATAGGATTTGT------
---TAGTAGGATCTCATGCAAGAGAGAAGGGG-GAAGTGTCAGAATC-TTGTTATCCATCACTAATTAGCTCCTCTTGTA
ATTGTAATAGTAGTAGCATGGCTGCTCATACATTTCCCCTCTCCTCTTCACGGCATTAACGTGTG-----ATTCCTCACA
CTTTTCATCTTTCTTTTCTGGTGAG-------AAATCACACCTTTCATCTGACAAGGCCCTATTGTCTACTACTACTACT
ACGGGATATTATTTCGAAATAAACTAGGACGGGAGATATTTGTGTGGCGTTGTTGTTCAAATTTGTTCTGTCAATTCCTG
CGATCTTTTTTATTCTGTTAAAACTTTGGTCCGCTGGAGGGGAAAGCA-----ACAGTATTTGAAAATTGAAACCCCATG
GCAGGCCGACCACCAGCAGGCAGCAGATGGGCATTAACTAATGTGCATGGCATACGAGGACATATGGCACATGGATGTGG
ACAGCCCATACCAAACTATACTCCTA
>chr2A_536
AAACC---------------------------------------------------------------------------
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-------------------------------------------AACCAGTGGTCCGTGCCTGCCTGTTTTTGTCTACCCC
GTACGCACGTATACTTACTCCGTCGCACACAGCAGA-------CTTAGTCAAGAAGCATACGCTTGGCAGGGACGACATT
ATGGCCACCCCTAACCGCCACCTTCCCCGCCACCGTGAGCGCCATCAATGCCGTCCTCGCCCCGCCTTAAATCCCTCCTC
CTACCCCCTCCCCTCCCTCCCTCCCTCCAT----------------CGCACATTGCCTGCTTACTGGCTCCCCGCCATTG
CTGACCAGCGACCGCAACCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGTCAAATATC
TCCGGCGAGAGCTTCAGCGATATTTATTTCCG----GAGAGCTTGCCGGGAAGGGGGAGGAGGAGGAGCGGCGGCGGCGG
CGGCATGGTGTTCTTCTGCTTCCTGGTGGACCAGCGGCGGAAGGTGCGGAGCAGCAAGCCGGCGGCGGGGATCTGCTCGC
GCTGCGGCGGCTGCGCCAGCGTGGCGGACATGGAGACGGCCACGCGGCTCTGCTACCTCCTCACCGTGCACCGCGTCACC
TGGCGCGCCATCATCTGCACCTTCTGCGGCGCCATGCTCAAGTCCTACCGCCACTACCGCCTCTACTAGGCCGGCGGCC-
-----------------------------------------ACCGTCTCCACCCGCGTCCCGTTTCCTGACGGCCGGTGC
A---------GCGTGCATGTGCCAGCTAGTTTTGTTTGC----TCTGCTTATTAATTTGTGTTTAAGGCGTGCTCTCTAG
CT--AGCTTGGAGATTGTTGCACTGGATGGATTCTTGTTATCTTATGTACATATGTTATGC-------------------
---------------------------------AAGGTTGGATTACCTTCTCTTCTAAATTGGTATCTCCGTCCGTGG--
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---------------------------------------------------------AGGCCAATAGGATTACTATTTAG
TAGTACTACGATCTCATGCAAGAGAGAAGGGA-GAAGTGTGAGGATCTTTGTTATCCATCCCTAATTAGCTCCTCTTGTA
ATAGTAGTATGGA---------TGTTCATACATTTCCCCTCTCCTCTCCACGGCATTAACGTGTGATTTGATTCCTCACA
CTTTTCACCTTCTTCTTTTTTGTTGTT-GAGAAAATCACACCTTTCATCTGACAAGGCCCTGTTGTCTGCTACTGCTATG
AGA------TATTTCGAAATAAACAAGGACGGGATGTATTTGTGTTGTGTTGTTGGTAGATTTTTTCCCGTCAATTCCCG
CGAAAAAATATATTCTGTCAAAACTTCGGTCCGCTGGAGGGGAAAGCTACTGTACAGTATTTGAAAATTGAAACCCCATG
GCAGGCCGACCAC-------CAGCAGATGGGCATTAACTAATGTGCATGGCATACGAGGACATATGACACATGGATGTGG
ACAGCCCATACCAAACTACTCCTA--
>SNPs
----SS-----SS--------------------------------S--S------------------SS-----------
--------------------------------------------S----S------------------------------
-----SSSS-SS--------------------------------------------------------------------
----------------------------------S---------------------------------------------
-----------------------------S-------------------------------------------------S
---------S------S---------------------------------------------------S-----------
---------------------------S------------------------------------S---------------
--------------S----------S----------------S-------------------------------------
-------------------------------S------------------------------------------------
-------------------------------------------------------------S------------------
-------S------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
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-----------S---S---------------SSSSS-----S--S-----------------------------------
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-------------------------------------------------------------------------------S
SSSSS-----------------------SSSSSSSSSSSSS-------------S----------------S-S---SS-
S-----------S------------------------------------------------------------S------
-------------------S---S----------------------------------S--------S-----------S
-----------------------------SSSS---------------S---------S------------S--------
--------------------S------------------------------------S----------------------
----------------------------------------S-------------------------------S-SS-S-S
S-SSSS-SS-SSSS-----------S---------------S-S------------------------------------
--------------------------------S--------------------------------S--------------
---------S------------------------------------------------------------S---------
---------------------------S-------------S--------------------------------------
---------------------------------S----------------------------------------------
-----------------------S------------------------------S--SS---------------------
---------------S---------SS--S---------SSSSSSSSSS-------------------------------
--------------------------
>forward_1001
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---------------------TATTGCACTGTCCACCACCG---------------------------------------
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>reverse_2443
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------------------------------------------TGTGCATGCATACGAGGACA------------------
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