Multiple sequence alignment - TraesCS2D01G204200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G204200 chr2D 100.000 1564 0 0 776 2339 155973948 155972385 0.000000e+00 2889.0
1 TraesCS2D01G204200 chr2D 100.000 420 0 0 1 420 155974723 155974304 0.000000e+00 776.0
2 TraesCS2D01G204200 chr2A 88.133 1441 49 49 776 2166 166063949 166062581 0.000000e+00 1602.0
3 TraesCS2D01G204200 chr2A 93.728 287 12 5 98 378 166064335 166064049 2.150000e-115 425.0
4 TraesCS2D01G204200 chr2A 97.778 45 1 0 32 76 166064382 166064338 6.930000e-11 78.7
5 TraesCS2D01G204200 chr2A 100.000 31 0 0 3 33 166064438 166064408 9.030000e-05 58.4
6 TraesCS2D01G204200 chr2B 88.975 1161 35 35 776 1923 213999387 213998307 0.000000e+00 1349.0
7 TraesCS2D01G204200 chr2B 95.361 388 13 4 32 418 213999851 213999468 1.540000e-171 612.0
8 TraesCS2D01G204200 chr2B 95.575 113 5 0 1987 2099 213997710 213997598 5.130000e-42 182.0
9 TraesCS2D01G204200 chr2B 82.967 182 26 5 2161 2339 221721637 221721458 2.410000e-35 159.0
10 TraesCS2D01G204200 chr2B 100.000 31 0 0 3 33 213999903 213999873 9.030000e-05 58.4
11 TraesCS2D01G204200 chr3D 88.406 138 11 4 1187 1322 427082020 427081886 6.690000e-36 161.0
12 TraesCS2D01G204200 chr3B 92.523 107 5 2 1218 1321 556714453 556714347 1.450000e-32 150.0
13 TraesCS2D01G204200 chr3A 86.957 138 11 5 1187 1322 559625125 559625257 5.210000e-32 148.0
14 TraesCS2D01G204200 chr3A 86.066 122 12 5 2162 2279 489572494 489572614 2.440000e-25 126.0
15 TraesCS2D01G204200 chr5A 83.784 148 20 3 2191 2334 268742787 268742934 1.130000e-28 137.0
16 TraesCS2D01G204200 chr6B 82.895 152 22 3 2185 2334 163238757 163238906 1.460000e-27 134.0
17 TraesCS2D01G204200 chr1A 82.143 140 20 4 2162 2297 10010387 10010525 5.280000e-22 115.0
18 TraesCS2D01G204200 chr5D 87.879 99 9 2 2185 2280 455908735 455908833 1.900000e-21 113.0
19 TraesCS2D01G204200 chr5B 81.395 129 19 4 2162 2285 164662566 164662438 1.480000e-17 100.0
20 TraesCS2D01G204200 chr7D 84.466 103 11 4 2188 2285 240148240 240148138 1.910000e-16 97.1
21 TraesCS2D01G204200 chr7D 79.845 129 21 3 2162 2285 239955587 239955459 3.200000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G204200 chr2D 155972385 155974723 2338 True 1832.500 2889 100.00000 1 2339 2 chr2D.!!$R1 2338
1 TraesCS2D01G204200 chr2A 166062581 166064438 1857 True 541.025 1602 94.90975 3 2166 4 chr2A.!!$R1 2163
2 TraesCS2D01G204200 chr2B 213997598 213999903 2305 True 550.350 1349 94.97775 3 2099 4 chr2B.!!$R2 2096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 452 0.179202 TGCGCCAATTCGATCGTTTG 60.179 50.0 15.94 18.28 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 2801 0.10412 CGTCTCCACTTGTGGTCACA 59.896 55.0 18.05 0.0 39.98 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 132 2.034685 TGCTCGTCATACAGATACAGGC 59.965 50.000 0.00 0.00 0.00 4.85
411 445 2.819595 GCTCCTGCGCCAATTCGA 60.820 61.111 4.18 0.00 0.00 3.71
413 447 1.937391 CTCCTGCGCCAATTCGATC 59.063 57.895 4.18 0.00 0.00 3.69
418 452 0.179202 TGCGCCAATTCGATCGTTTG 60.179 50.000 15.94 18.28 0.00 2.93
942 989 2.121538 CATCTCGTCTCCCGGCTGA 61.122 63.158 0.00 0.00 37.11 4.26
987 1041 1.688884 GGGGGAGAGAGCTCAGCTT 60.689 63.158 17.77 0.00 43.14 3.74
1101 1155 2.474816 GCTCGTCTCTCTCTCTCTCTC 58.525 57.143 0.00 0.00 0.00 3.20
1108 1162 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
1109 1163 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
1110 1164 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1111 1165 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1112 1166 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1113 1167 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1114 1168 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1115 1169 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1116 1170 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
1117 1171 3.378512 TCTCTCTCTCTCTCTCTCTGCT 58.621 50.000 0.00 0.00 0.00 4.24
1118 1172 3.776969 TCTCTCTCTCTCTCTCTCTGCTT 59.223 47.826 0.00 0.00 0.00 3.91
1119 1173 4.225942 TCTCTCTCTCTCTCTCTCTGCTTT 59.774 45.833 0.00 0.00 0.00 3.51
1120 1174 4.264253 TCTCTCTCTCTCTCTCTGCTTTG 58.736 47.826 0.00 0.00 0.00 2.77
1121 1175 4.012374 CTCTCTCTCTCTCTCTGCTTTGT 58.988 47.826 0.00 0.00 0.00 2.83
1122 1176 4.406456 TCTCTCTCTCTCTCTGCTTTGTT 58.594 43.478 0.00 0.00 0.00 2.83
1123 1177 4.458989 TCTCTCTCTCTCTCTGCTTTGTTC 59.541 45.833 0.00 0.00 0.00 3.18
1124 1178 4.406456 TCTCTCTCTCTCTGCTTTGTTCT 58.594 43.478 0.00 0.00 0.00 3.01
1125 1179 4.218200 TCTCTCTCTCTCTGCTTTGTTCTG 59.782 45.833 0.00 0.00 0.00 3.02
1126 1180 4.148079 TCTCTCTCTCTGCTTTGTTCTGA 58.852 43.478 0.00 0.00 0.00 3.27
1127 1181 4.771577 TCTCTCTCTCTGCTTTGTTCTGAT 59.228 41.667 0.00 0.00 0.00 2.90
1128 1182 5.070770 TCTCTCTCTGCTTTGTTCTGATC 57.929 43.478 0.00 0.00 0.00 2.92
1129 1183 3.842820 TCTCTCTGCTTTGTTCTGATCG 58.157 45.455 0.00 0.00 0.00 3.69
1130 1184 3.256879 TCTCTCTGCTTTGTTCTGATCGT 59.743 43.478 0.00 0.00 0.00 3.73
1133 1187 4.459337 TCTCTGCTTTGTTCTGATCGTCTA 59.541 41.667 0.00 0.00 0.00 2.59
1142 1196 8.601845 TTTGTTCTGATCGTCTATTCTTTCAA 57.398 30.769 0.00 0.00 0.00 2.69
1144 1198 8.018677 TGTTCTGATCGTCTATTCTTTCAAAC 57.981 34.615 0.00 0.00 0.00 2.93
1151 1205 5.635280 TCGTCTATTCTTTCAAACTGCTCTG 59.365 40.000 0.00 0.00 0.00 3.35
1162 1216 0.663153 ACTGCTCTGGTTTGCGAAAC 59.337 50.000 0.00 0.00 40.65 2.78
1347 1401 1.248101 TGAAGCAGTGATCGACCGGA 61.248 55.000 9.46 0.00 0.00 5.14
1446 1500 3.197790 CCGGCATGCTTCGACAGG 61.198 66.667 18.92 6.20 0.00 4.00
1470 1524 1.374252 GGTGGCTCGGTGTAGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
1483 1541 5.277011 CGGTGTAGTGTGCATAAAGATGATG 60.277 44.000 0.00 0.00 34.73 3.07
1492 1550 3.396560 CATAAAGATGATGGAGCGAGCA 58.603 45.455 0.00 0.00 34.73 4.26
1815 1890 3.886044 CTGTAAGCACCAGACACGA 57.114 52.632 0.00 0.00 31.38 4.35
1860 1948 4.084287 AGAATTGTGAGTGTGGCATTGAT 58.916 39.130 0.00 0.00 0.00 2.57
1883 1971 0.394762 TGGCCTGATTGATCCTGTGC 60.395 55.000 3.32 0.00 0.00 4.57
2075 2696 3.292159 GTCGGGGTGGTTGGTTGC 61.292 66.667 0.00 0.00 0.00 4.17
2091 2712 3.069318 GCTTCCGAGGGTCCGTCT 61.069 66.667 9.81 0.00 0.00 4.18
2166 2787 4.361971 AGACGGGGAGGAGCACGA 62.362 66.667 0.00 0.00 0.00 4.35
2167 2788 3.379445 GACGGGGAGGAGCACGAA 61.379 66.667 0.00 0.00 0.00 3.85
2168 2789 3.358076 GACGGGGAGGAGCACGAAG 62.358 68.421 0.00 0.00 0.00 3.79
2170 2791 2.050350 CGGGGAGGAGCACGAAGTA 61.050 63.158 0.00 0.00 41.61 2.24
2171 2792 1.601419 CGGGGAGGAGCACGAAGTAA 61.601 60.000 0.00 0.00 41.61 2.24
2172 2793 0.611714 GGGGAGGAGCACGAAGTAAA 59.388 55.000 0.00 0.00 41.61 2.01
2173 2794 1.405661 GGGGAGGAGCACGAAGTAAAG 60.406 57.143 0.00 0.00 41.61 1.85
2174 2795 1.405661 GGGAGGAGCACGAAGTAAAGG 60.406 57.143 0.00 0.00 41.61 3.11
2175 2796 1.549170 GGAGGAGCACGAAGTAAAGGA 59.451 52.381 0.00 0.00 41.61 3.36
2176 2797 2.168728 GGAGGAGCACGAAGTAAAGGAT 59.831 50.000 0.00 0.00 41.61 3.24
2177 2798 3.383825 GGAGGAGCACGAAGTAAAGGATA 59.616 47.826 0.00 0.00 41.61 2.59
2178 2799 4.039366 GGAGGAGCACGAAGTAAAGGATAT 59.961 45.833 0.00 0.00 41.61 1.63
2179 2800 5.243283 GGAGGAGCACGAAGTAAAGGATATA 59.757 44.000 0.00 0.00 41.61 0.86
2180 2801 6.071278 GGAGGAGCACGAAGTAAAGGATATAT 60.071 42.308 0.00 0.00 41.61 0.86
2181 2802 6.692486 AGGAGCACGAAGTAAAGGATATATG 58.308 40.000 0.00 0.00 41.61 1.78
2182 2803 6.267928 AGGAGCACGAAGTAAAGGATATATGT 59.732 38.462 0.00 0.00 41.61 2.29
2183 2804 6.366332 GGAGCACGAAGTAAAGGATATATGTG 59.634 42.308 0.00 0.00 41.61 3.21
2184 2805 7.050970 AGCACGAAGTAAAGGATATATGTGA 57.949 36.000 0.00 0.00 41.61 3.58
2185 2806 6.924060 AGCACGAAGTAAAGGATATATGTGAC 59.076 38.462 0.00 0.00 41.61 3.67
2186 2807 6.145696 GCACGAAGTAAAGGATATATGTGACC 59.854 42.308 0.00 0.00 41.61 4.02
2187 2808 7.207383 CACGAAGTAAAGGATATATGTGACCA 58.793 38.462 0.00 0.00 41.61 4.02
2188 2809 7.169308 CACGAAGTAAAGGATATATGTGACCAC 59.831 40.741 0.00 0.00 41.61 4.16
2189 2810 7.147794 ACGAAGTAAAGGATATATGTGACCACA 60.148 37.037 5.22 5.22 41.94 4.17
2190 2811 7.709182 CGAAGTAAAGGATATATGTGACCACAA 59.291 37.037 6.95 0.00 45.41 3.33
2191 2812 8.964476 AAGTAAAGGATATATGTGACCACAAG 57.036 34.615 6.95 0.00 45.41 3.16
2192 2813 8.090788 AGTAAAGGATATATGTGACCACAAGT 57.909 34.615 6.95 1.99 45.41 3.16
2193 2814 7.987458 AGTAAAGGATATATGTGACCACAAGTG 59.013 37.037 6.95 0.00 45.41 3.16
2206 2827 3.303881 CACAAGTGGAGACGATGAAGA 57.696 47.619 0.00 0.00 0.00 2.87
2207 2828 2.989840 CACAAGTGGAGACGATGAAGAC 59.010 50.000 0.00 0.00 0.00 3.01
2208 2829 2.254459 CAAGTGGAGACGATGAAGACG 58.746 52.381 0.00 0.00 0.00 4.18
2209 2830 1.822506 AGTGGAGACGATGAAGACGA 58.177 50.000 0.00 0.00 34.70 4.20
2210 2831 1.740585 AGTGGAGACGATGAAGACGAG 59.259 52.381 0.00 0.00 34.70 4.18
2211 2832 1.095600 TGGAGACGATGAAGACGAGG 58.904 55.000 0.00 0.00 34.70 4.63
2212 2833 1.339727 TGGAGACGATGAAGACGAGGA 60.340 52.381 0.00 0.00 34.70 3.71
2213 2834 1.950909 GGAGACGATGAAGACGAGGAT 59.049 52.381 0.00 0.00 34.70 3.24
2214 2835 2.287308 GGAGACGATGAAGACGAGGATG 60.287 54.545 0.00 0.00 34.70 3.51
2215 2836 2.356382 GAGACGATGAAGACGAGGATGT 59.644 50.000 0.00 0.00 34.70 3.06
2216 2837 2.098280 AGACGATGAAGACGAGGATGTG 59.902 50.000 0.00 0.00 34.70 3.21
2217 2838 1.819288 ACGATGAAGACGAGGATGTGT 59.181 47.619 0.00 0.00 34.70 3.72
2218 2839 2.231478 ACGATGAAGACGAGGATGTGTT 59.769 45.455 0.00 0.00 34.70 3.32
2219 2840 3.254060 CGATGAAGACGAGGATGTGTTT 58.746 45.455 0.00 0.00 0.00 2.83
2220 2841 3.304559 CGATGAAGACGAGGATGTGTTTC 59.695 47.826 0.00 0.00 0.00 2.78
2221 2842 3.040147 TGAAGACGAGGATGTGTTTCC 57.960 47.619 0.00 0.00 35.90 3.13
2222 2843 1.993370 GAAGACGAGGATGTGTTTCCG 59.007 52.381 0.00 0.00 40.94 4.30
2223 2844 1.254026 AGACGAGGATGTGTTTCCGA 58.746 50.000 0.00 0.00 40.94 4.55
2224 2845 1.616865 AGACGAGGATGTGTTTCCGAA 59.383 47.619 0.00 0.00 40.94 4.30
2225 2846 1.993370 GACGAGGATGTGTTTCCGAAG 59.007 52.381 0.00 0.00 40.94 3.79
2226 2847 1.343465 ACGAGGATGTGTTTCCGAAGT 59.657 47.619 0.00 0.00 40.94 3.01
2227 2848 2.224209 ACGAGGATGTGTTTCCGAAGTT 60.224 45.455 0.00 0.00 40.94 2.66
2228 2849 2.412089 CGAGGATGTGTTTCCGAAGTTC 59.588 50.000 0.00 0.00 40.94 3.01
2229 2850 2.742589 GAGGATGTGTTTCCGAAGTTCC 59.257 50.000 0.00 0.00 40.94 3.62
2230 2851 1.810755 GGATGTGTTTCCGAAGTTCCC 59.189 52.381 0.00 0.00 0.00 3.97
2231 2852 2.552373 GGATGTGTTTCCGAAGTTCCCT 60.552 50.000 0.00 0.00 0.00 4.20
2232 2853 2.249844 TGTGTTTCCGAAGTTCCCTC 57.750 50.000 0.00 0.00 0.00 4.30
2233 2854 1.202722 TGTGTTTCCGAAGTTCCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
2234 2855 1.071857 GTGTTTCCGAAGTTCCCTCCT 59.928 52.381 0.00 0.00 0.00 3.69
2235 2856 1.772453 TGTTTCCGAAGTTCCCTCCTT 59.228 47.619 0.00 0.00 0.00 3.36
2236 2857 2.173996 TGTTTCCGAAGTTCCCTCCTTT 59.826 45.455 0.00 0.00 0.00 3.11
2237 2858 2.552743 GTTTCCGAAGTTCCCTCCTTTG 59.447 50.000 0.00 0.00 0.00 2.77
2238 2859 1.724545 TCCGAAGTTCCCTCCTTTGA 58.275 50.000 0.00 0.00 0.00 2.69
2239 2860 1.623811 TCCGAAGTTCCCTCCTTTGAG 59.376 52.381 0.00 0.00 38.42 3.02
2252 2873 4.338795 TCCTTTGAGGAGGTATGTCTCT 57.661 45.455 0.00 0.00 40.06 3.10
2253 2874 5.467668 TCCTTTGAGGAGGTATGTCTCTA 57.532 43.478 0.00 0.00 40.06 2.43
2254 2875 6.031964 TCCTTTGAGGAGGTATGTCTCTAT 57.968 41.667 0.00 0.00 40.06 1.98
2255 2876 6.444704 TCCTTTGAGGAGGTATGTCTCTATT 58.555 40.000 0.00 0.00 40.06 1.73
2256 2877 6.325028 TCCTTTGAGGAGGTATGTCTCTATTG 59.675 42.308 0.00 0.00 40.06 1.90
2257 2878 6.325028 CCTTTGAGGAGGTATGTCTCTATTGA 59.675 42.308 0.00 0.00 37.67 2.57
2258 2879 7.147655 CCTTTGAGGAGGTATGTCTCTATTGAA 60.148 40.741 0.00 0.00 37.67 2.69
2259 2880 6.968263 TGAGGAGGTATGTCTCTATTGAAG 57.032 41.667 0.00 0.00 34.39 3.02
2260 2881 5.835819 TGAGGAGGTATGTCTCTATTGAAGG 59.164 44.000 0.00 0.00 34.39 3.46
2261 2882 5.151454 AGGAGGTATGTCTCTATTGAAGGG 58.849 45.833 0.00 0.00 34.39 3.95
2262 2883 5.103043 AGGAGGTATGTCTCTATTGAAGGGA 60.103 44.000 0.00 0.00 34.39 4.20
2263 2884 5.782845 GGAGGTATGTCTCTATTGAAGGGAT 59.217 44.000 0.00 0.00 36.96 3.85
2264 2885 6.295575 GGAGGTATGTCTCTATTGAAGGGATG 60.296 46.154 0.00 0.00 36.96 3.51
2265 2886 6.385443 AGGTATGTCTCTATTGAAGGGATGA 58.615 40.000 0.00 0.00 36.96 2.92
2266 2887 6.846505 AGGTATGTCTCTATTGAAGGGATGAA 59.153 38.462 0.00 0.00 36.96 2.57
2267 2888 7.515514 AGGTATGTCTCTATTGAAGGGATGAAT 59.484 37.037 0.00 0.00 36.96 2.57
2268 2889 7.605691 GGTATGTCTCTATTGAAGGGATGAATG 59.394 40.741 0.00 0.00 36.96 2.67
2269 2890 5.371526 TGTCTCTATTGAAGGGATGAATGC 58.628 41.667 0.00 0.00 36.96 3.56
2270 2891 5.104402 TGTCTCTATTGAAGGGATGAATGCA 60.104 40.000 0.00 0.00 36.96 3.96
2271 2892 5.238214 GTCTCTATTGAAGGGATGAATGCAC 59.762 44.000 0.00 0.00 36.96 4.57
2272 2893 5.104402 TCTCTATTGAAGGGATGAATGCACA 60.104 40.000 0.00 0.00 25.88 4.57
2273 2894 5.508567 TCTATTGAAGGGATGAATGCACAA 58.491 37.500 0.00 0.00 0.00 3.33
2274 2895 6.131264 TCTATTGAAGGGATGAATGCACAAT 58.869 36.000 0.00 0.00 0.00 2.71
2275 2896 4.459390 TTGAAGGGATGAATGCACAATG 57.541 40.909 0.00 0.00 0.00 2.82
2276 2897 2.166870 TGAAGGGATGAATGCACAATGC 59.833 45.455 0.00 0.00 45.29 3.56
2277 2898 2.154567 AGGGATGAATGCACAATGCT 57.845 45.000 2.02 0.00 45.31 3.79
2278 2899 2.029623 AGGGATGAATGCACAATGCTC 58.970 47.619 2.02 0.00 45.31 4.26
2279 2900 1.068127 GGGATGAATGCACAATGCTCC 59.932 52.381 2.02 0.26 45.31 4.70
2280 2901 1.068127 GGATGAATGCACAATGCTCCC 59.932 52.381 2.02 0.00 45.31 4.30
2281 2902 2.029623 GATGAATGCACAATGCTCCCT 58.970 47.619 2.02 0.00 45.31 4.20
2282 2903 2.804986 TGAATGCACAATGCTCCCTA 57.195 45.000 2.02 0.00 45.31 3.53
2283 2904 3.084536 TGAATGCACAATGCTCCCTAA 57.915 42.857 2.02 0.00 45.31 2.69
2284 2905 3.018856 TGAATGCACAATGCTCCCTAAG 58.981 45.455 2.02 0.00 45.31 2.18
2285 2906 2.814805 ATGCACAATGCTCCCTAAGT 57.185 45.000 2.02 0.00 45.31 2.24
2286 2907 2.584835 TGCACAATGCTCCCTAAGTT 57.415 45.000 2.02 0.00 45.31 2.66
2287 2908 2.875296 TGCACAATGCTCCCTAAGTTT 58.125 42.857 2.02 0.00 45.31 2.66
2288 2909 2.819608 TGCACAATGCTCCCTAAGTTTC 59.180 45.455 2.02 0.00 45.31 2.78
2289 2910 2.164422 GCACAATGCTCCCTAAGTTTCC 59.836 50.000 0.00 0.00 40.96 3.13
2290 2911 2.755103 CACAATGCTCCCTAAGTTTCCC 59.245 50.000 0.00 0.00 0.00 3.97
2291 2912 2.378547 ACAATGCTCCCTAAGTTTCCCA 59.621 45.455 0.00 0.00 0.00 4.37
2292 2913 3.181423 ACAATGCTCCCTAAGTTTCCCAA 60.181 43.478 0.00 0.00 0.00 4.12
2293 2914 2.879103 TGCTCCCTAAGTTTCCCAAG 57.121 50.000 0.00 0.00 0.00 3.61
2294 2915 1.354368 TGCTCCCTAAGTTTCCCAAGG 59.646 52.381 0.00 0.00 0.00 3.61
2295 2916 1.633945 GCTCCCTAAGTTTCCCAAGGA 59.366 52.381 0.00 0.00 0.00 3.36
2296 2917 2.618302 GCTCCCTAAGTTTCCCAAGGAC 60.618 54.545 0.00 0.00 0.00 3.85
2297 2918 2.913617 CTCCCTAAGTTTCCCAAGGACT 59.086 50.000 0.00 0.00 0.00 3.85
2298 2919 3.330998 CTCCCTAAGTTTCCCAAGGACTT 59.669 47.826 0.00 0.00 37.40 3.01
2299 2920 3.073946 TCCCTAAGTTTCCCAAGGACTTG 59.926 47.826 5.09 5.09 40.13 3.16
2300 2921 2.820197 CCTAAGTTTCCCAAGGACTTGC 59.180 50.000 6.54 0.00 39.16 4.01
2301 2922 2.755952 AAGTTTCCCAAGGACTTGCT 57.244 45.000 6.54 0.00 39.16 3.91
2302 2923 2.278332 AGTTTCCCAAGGACTTGCTC 57.722 50.000 6.54 0.00 39.16 4.26
2303 2924 1.777272 AGTTTCCCAAGGACTTGCTCT 59.223 47.619 6.54 0.00 39.16 4.09
2304 2925 2.979678 AGTTTCCCAAGGACTTGCTCTA 59.020 45.455 6.54 0.00 39.16 2.43
2305 2926 3.589288 AGTTTCCCAAGGACTTGCTCTAT 59.411 43.478 6.54 0.00 39.16 1.98
2306 2927 4.043435 AGTTTCCCAAGGACTTGCTCTATT 59.957 41.667 6.54 0.00 39.16 1.73
2307 2928 3.914426 TCCCAAGGACTTGCTCTATTC 57.086 47.619 6.54 0.00 39.16 1.75
2308 2929 3.454858 TCCCAAGGACTTGCTCTATTCT 58.545 45.455 6.54 0.00 39.16 2.40
2309 2930 3.452627 TCCCAAGGACTTGCTCTATTCTC 59.547 47.826 6.54 0.00 39.16 2.87
2310 2931 3.432890 CCCAAGGACTTGCTCTATTCTCC 60.433 52.174 6.54 0.00 39.16 3.71
2311 2932 3.454082 CCAAGGACTTGCTCTATTCTCCT 59.546 47.826 6.54 0.00 39.16 3.69
2312 2933 4.440880 CAAGGACTTGCTCTATTCTCCTG 58.559 47.826 0.00 0.00 33.45 3.86
2313 2934 3.987745 AGGACTTGCTCTATTCTCCTGA 58.012 45.455 0.00 0.00 0.00 3.86
2314 2935 3.704061 AGGACTTGCTCTATTCTCCTGAC 59.296 47.826 0.00 0.00 0.00 3.51
2315 2936 3.490078 GGACTTGCTCTATTCTCCTGACG 60.490 52.174 0.00 0.00 0.00 4.35
2316 2937 3.093057 ACTTGCTCTATTCTCCTGACGT 58.907 45.455 0.00 0.00 0.00 4.34
2317 2938 3.129638 ACTTGCTCTATTCTCCTGACGTC 59.870 47.826 9.11 9.11 0.00 4.34
2318 2939 2.025155 TGCTCTATTCTCCTGACGTCC 58.975 52.381 14.12 0.00 0.00 4.79
2319 2940 2.025155 GCTCTATTCTCCTGACGTCCA 58.975 52.381 14.12 0.01 0.00 4.02
2320 2941 2.223618 GCTCTATTCTCCTGACGTCCAC 60.224 54.545 14.12 0.00 0.00 4.02
2321 2942 2.014857 TCTATTCTCCTGACGTCCACG 58.985 52.381 14.12 1.18 46.33 4.94
2322 2943 0.454600 TATTCTCCTGACGTCCACGC 59.545 55.000 14.12 0.00 44.43 5.34
2323 2944 1.532604 ATTCTCCTGACGTCCACGCA 61.533 55.000 14.12 0.00 44.43 5.24
2324 2945 2.416244 TTCTCCTGACGTCCACGCAC 62.416 60.000 14.12 0.00 44.43 5.34
2325 2946 4.337060 TCCTGACGTCCACGCACG 62.337 66.667 14.12 0.96 45.65 5.34
2326 2947 4.337060 CCTGACGTCCACGCACGA 62.337 66.667 14.12 0.00 42.69 4.35
2327 2948 2.126463 CTGACGTCCACGCACGAT 60.126 61.111 14.12 0.00 42.69 3.73
2328 2949 2.430075 TGACGTCCACGCACGATG 60.430 61.111 14.12 0.00 42.69 3.84
2329 2950 3.838795 GACGTCCACGCACGATGC 61.839 66.667 3.51 0.00 42.69 3.91
2330 2951 4.656117 ACGTCCACGCACGATGCA 62.656 61.111 8.93 0.00 45.36 3.96
2331 2952 3.410516 CGTCCACGCACGATGCAA 61.411 61.111 9.95 0.00 45.36 4.08
2332 2953 2.476051 GTCCACGCACGATGCAAG 59.524 61.111 9.95 0.00 45.36 4.01
2333 2954 2.741985 TCCACGCACGATGCAAGG 60.742 61.111 9.95 9.83 45.36 3.61
2334 2955 4.465512 CCACGCACGATGCAAGGC 62.466 66.667 9.95 0.00 45.36 4.35
2338 2959 3.195002 GCACGATGCAAGGCGCTA 61.195 61.111 7.64 0.00 44.26 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.832237 CTGAACAGGGCGTGGCACT 62.832 63.158 16.72 0.00 46.60 4.40
166 195 1.927487 ACATTGGCATTTCAGCAGGA 58.073 45.000 0.00 0.00 35.83 3.86
397 431 1.705337 AACGATCGAATTGGCGCAGG 61.705 55.000 24.34 0.00 0.00 4.85
819 863 0.804156 GTAAGTCTCTGCCGCTGCTC 60.804 60.000 0.70 0.00 38.71 4.26
942 989 3.114616 GCTCGTGCGTGCACTGAT 61.115 61.111 21.36 0.00 44.16 2.90
968 1015 3.535962 GCTGAGCTCTCTCCCCCG 61.536 72.222 16.19 0.00 38.58 5.73
978 1032 0.323908 ACGAGACCCTAAGCTGAGCT 60.324 55.000 0.00 0.00 42.56 4.09
987 1041 0.042131 ACCCCATGAACGAGACCCTA 59.958 55.000 0.00 0.00 0.00 3.53
1101 1155 4.460382 AGAACAAAGCAGAGAGAGAGAGAG 59.540 45.833 0.00 0.00 0.00 3.20
1108 1162 3.256879 ACGATCAGAACAAAGCAGAGAGA 59.743 43.478 0.00 0.00 0.00 3.10
1109 1163 3.583806 ACGATCAGAACAAAGCAGAGAG 58.416 45.455 0.00 0.00 0.00 3.20
1110 1164 3.256879 AGACGATCAGAACAAAGCAGAGA 59.743 43.478 0.00 0.00 0.00 3.10
1111 1165 3.583806 AGACGATCAGAACAAAGCAGAG 58.416 45.455 0.00 0.00 0.00 3.35
1112 1166 3.667497 AGACGATCAGAACAAAGCAGA 57.333 42.857 0.00 0.00 0.00 4.26
1113 1167 5.809562 AGAATAGACGATCAGAACAAAGCAG 59.190 40.000 0.00 0.00 0.00 4.24
1114 1168 5.724328 AGAATAGACGATCAGAACAAAGCA 58.276 37.500 0.00 0.00 0.00 3.91
1115 1169 6.654793 AAGAATAGACGATCAGAACAAAGC 57.345 37.500 0.00 0.00 0.00 3.51
1116 1170 8.244494 TGAAAGAATAGACGATCAGAACAAAG 57.756 34.615 0.00 0.00 0.00 2.77
1117 1171 8.601845 TTGAAAGAATAGACGATCAGAACAAA 57.398 30.769 0.00 0.00 0.00 2.83
1118 1172 8.495949 GTTTGAAAGAATAGACGATCAGAACAA 58.504 33.333 0.00 0.00 0.00 2.83
1119 1173 7.872993 AGTTTGAAAGAATAGACGATCAGAACA 59.127 33.333 0.00 0.00 0.00 3.18
1120 1174 8.165428 CAGTTTGAAAGAATAGACGATCAGAAC 58.835 37.037 0.00 0.00 0.00 3.01
1121 1175 7.148573 GCAGTTTGAAAGAATAGACGATCAGAA 60.149 37.037 0.00 0.00 0.00 3.02
1122 1176 6.311445 GCAGTTTGAAAGAATAGACGATCAGA 59.689 38.462 0.00 0.00 0.00 3.27
1123 1177 6.312426 AGCAGTTTGAAAGAATAGACGATCAG 59.688 38.462 0.00 0.00 0.00 2.90
1124 1178 6.166279 AGCAGTTTGAAAGAATAGACGATCA 58.834 36.000 0.00 0.00 0.00 2.92
1125 1179 6.533367 AGAGCAGTTTGAAAGAATAGACGATC 59.467 38.462 0.00 0.00 0.00 3.69
1126 1180 6.312426 CAGAGCAGTTTGAAAGAATAGACGAT 59.688 38.462 0.00 0.00 0.00 3.73
1127 1181 5.635280 CAGAGCAGTTTGAAAGAATAGACGA 59.365 40.000 0.00 0.00 0.00 4.20
1128 1182 5.163913 CCAGAGCAGTTTGAAAGAATAGACG 60.164 44.000 0.00 0.00 0.00 4.18
1129 1183 5.703130 ACCAGAGCAGTTTGAAAGAATAGAC 59.297 40.000 0.00 0.00 0.00 2.59
1130 1184 5.869579 ACCAGAGCAGTTTGAAAGAATAGA 58.130 37.500 0.00 0.00 0.00 1.98
1133 1187 5.859205 AAACCAGAGCAGTTTGAAAGAAT 57.141 34.783 0.00 0.00 36.13 2.40
1142 1196 1.065551 GTTTCGCAAACCAGAGCAGTT 59.934 47.619 0.00 0.00 35.35 3.16
1144 1198 0.947244 AGTTTCGCAAACCAGAGCAG 59.053 50.000 7.77 0.00 42.34 4.24
1151 1205 3.498397 TCAGAATCTGAGTTTCGCAAACC 59.502 43.478 9.18 2.54 42.34 3.27
1162 1216 2.864946 CCACGCAGAATCAGAATCTGAG 59.135 50.000 18.34 16.90 45.74 3.35
1427 1481 4.776322 TGTCGAAGCATGCCGGGG 62.776 66.667 15.66 1.33 0.00 5.73
1432 1486 1.975363 GACAGCCTGTCGAAGCATGC 61.975 60.000 10.51 10.51 37.67 4.06
1470 1524 2.159234 GCTCGCTCCATCATCTTTATGC 59.841 50.000 0.00 0.00 32.76 3.14
1483 1541 2.817396 GGAACTGCTGCTCGCTCC 60.817 66.667 0.00 0.00 40.11 4.70
1492 1550 3.923864 TGGCGACACGGAACTGCT 61.924 61.111 0.00 0.00 33.40 4.24
1604 1662 1.349627 GAAGGACACATGCGATGCG 59.650 57.895 0.00 0.00 0.00 4.73
1703 1777 2.261671 CGAGCCTTACACGTGCCT 59.738 61.111 17.22 4.18 0.00 4.75
1814 1889 1.293924 CCTCAACACCATCATCGCTC 58.706 55.000 0.00 0.00 0.00 5.03
1815 1890 0.107508 CCCTCAACACCATCATCGCT 60.108 55.000 0.00 0.00 0.00 4.93
1860 1948 3.072038 CACAGGATCAATCAGGCCATCTA 59.928 47.826 5.01 0.00 0.00 1.98
1948 2037 3.055719 CATCCCCCACACACACGC 61.056 66.667 0.00 0.00 0.00 5.34
1953 2042 2.121735 TCACCCATCCCCCACACA 60.122 61.111 0.00 0.00 0.00 3.72
2075 2696 2.885861 CAGACGGACCCTCGGAAG 59.114 66.667 0.00 0.00 0.00 3.46
2099 2720 0.380733 TCCCGATGATGACGACGAAG 59.619 55.000 0.00 0.00 0.00 3.79
2166 2787 8.548877 ACTTGTGGTCACATATATCCTTTACTT 58.451 33.333 4.53 0.00 41.52 2.24
2167 2788 7.987458 CACTTGTGGTCACATATATCCTTTACT 59.013 37.037 4.53 0.00 41.52 2.24
2168 2789 7.226720 CCACTTGTGGTCACATATATCCTTTAC 59.773 40.741 11.39 0.00 41.52 2.01
2169 2790 7.126573 TCCACTTGTGGTCACATATATCCTTTA 59.873 37.037 18.05 0.00 41.52 1.85
2170 2791 6.069673 TCCACTTGTGGTCACATATATCCTTT 60.070 38.462 18.05 0.00 41.52 3.11
2171 2792 5.428457 TCCACTTGTGGTCACATATATCCTT 59.572 40.000 18.05 0.00 41.52 3.36
2172 2793 4.968719 TCCACTTGTGGTCACATATATCCT 59.031 41.667 18.05 0.00 41.52 3.24
2173 2794 5.070446 TCTCCACTTGTGGTCACATATATCC 59.930 44.000 18.05 0.00 41.52 2.59
2174 2795 5.986135 GTCTCCACTTGTGGTCACATATATC 59.014 44.000 18.05 0.00 41.52 1.63
2175 2796 5.451937 CGTCTCCACTTGTGGTCACATATAT 60.452 44.000 18.05 0.00 41.52 0.86
2176 2797 4.142249 CGTCTCCACTTGTGGTCACATATA 60.142 45.833 18.05 0.00 41.52 0.86
2177 2798 3.368427 CGTCTCCACTTGTGGTCACATAT 60.368 47.826 18.05 0.00 41.52 1.78
2178 2799 2.029380 CGTCTCCACTTGTGGTCACATA 60.029 50.000 18.05 0.00 41.52 2.29
2179 2800 1.270305 CGTCTCCACTTGTGGTCACAT 60.270 52.381 18.05 0.00 41.52 3.21
2180 2801 0.104120 CGTCTCCACTTGTGGTCACA 59.896 55.000 18.05 0.00 39.98 3.58
2181 2802 0.387929 TCGTCTCCACTTGTGGTCAC 59.612 55.000 18.05 14.19 0.00 3.67
2182 2803 1.000843 CATCGTCTCCACTTGTGGTCA 59.999 52.381 18.05 4.80 0.00 4.02
2183 2804 1.272490 TCATCGTCTCCACTTGTGGTC 59.728 52.381 18.05 9.91 0.00 4.02
2184 2805 1.338107 TCATCGTCTCCACTTGTGGT 58.662 50.000 18.05 0.00 0.00 4.16
2185 2806 2.029020 TCTTCATCGTCTCCACTTGTGG 60.029 50.000 13.24 13.24 0.00 4.17
2186 2807 2.989840 GTCTTCATCGTCTCCACTTGTG 59.010 50.000 0.00 0.00 0.00 3.33
2187 2808 2.351835 CGTCTTCATCGTCTCCACTTGT 60.352 50.000 0.00 0.00 0.00 3.16
2188 2809 2.095212 TCGTCTTCATCGTCTCCACTTG 60.095 50.000 0.00 0.00 0.00 3.16
2189 2810 2.160205 TCGTCTTCATCGTCTCCACTT 58.840 47.619 0.00 0.00 0.00 3.16
2190 2811 1.740585 CTCGTCTTCATCGTCTCCACT 59.259 52.381 0.00 0.00 0.00 4.00
2191 2812 1.202200 CCTCGTCTTCATCGTCTCCAC 60.202 57.143 0.00 0.00 0.00 4.02
2192 2813 1.095600 CCTCGTCTTCATCGTCTCCA 58.904 55.000 0.00 0.00 0.00 3.86
2193 2814 1.380524 TCCTCGTCTTCATCGTCTCC 58.619 55.000 0.00 0.00 0.00 3.71
2194 2815 2.356382 ACATCCTCGTCTTCATCGTCTC 59.644 50.000 0.00 0.00 0.00 3.36
2195 2816 2.098280 CACATCCTCGTCTTCATCGTCT 59.902 50.000 0.00 0.00 0.00 4.18
2196 2817 2.159366 ACACATCCTCGTCTTCATCGTC 60.159 50.000 0.00 0.00 0.00 4.20
2197 2818 1.819288 ACACATCCTCGTCTTCATCGT 59.181 47.619 0.00 0.00 0.00 3.73
2198 2819 2.568696 ACACATCCTCGTCTTCATCG 57.431 50.000 0.00 0.00 0.00 3.84
2199 2820 3.619038 GGAAACACATCCTCGTCTTCATC 59.381 47.826 0.00 0.00 36.50 2.92
2200 2821 3.600388 GGAAACACATCCTCGTCTTCAT 58.400 45.455 0.00 0.00 36.50 2.57
2201 2822 2.609491 CGGAAACACATCCTCGTCTTCA 60.609 50.000 0.00 0.00 37.34 3.02
2202 2823 1.993370 CGGAAACACATCCTCGTCTTC 59.007 52.381 0.00 0.00 37.34 2.87
2203 2824 1.616865 TCGGAAACACATCCTCGTCTT 59.383 47.619 0.00 0.00 37.34 3.01
2204 2825 1.254026 TCGGAAACACATCCTCGTCT 58.746 50.000 0.00 0.00 37.34 4.18
2205 2826 1.993370 CTTCGGAAACACATCCTCGTC 59.007 52.381 0.00 0.00 37.34 4.20
2206 2827 1.343465 ACTTCGGAAACACATCCTCGT 59.657 47.619 0.00 0.00 37.34 4.18
2207 2828 2.080286 ACTTCGGAAACACATCCTCG 57.920 50.000 0.00 0.00 37.34 4.63
2208 2829 2.742589 GGAACTTCGGAAACACATCCTC 59.257 50.000 0.00 0.00 37.34 3.71
2209 2830 2.552373 GGGAACTTCGGAAACACATCCT 60.552 50.000 0.00 0.00 37.34 3.24
2210 2831 1.810755 GGGAACTTCGGAAACACATCC 59.189 52.381 0.00 0.00 36.05 3.51
2211 2832 2.742589 GAGGGAACTTCGGAAACACATC 59.257 50.000 0.00 0.00 44.43 3.06
2212 2833 2.552373 GGAGGGAACTTCGGAAACACAT 60.552 50.000 0.00 0.00 44.43 3.21
2213 2834 1.202722 GGAGGGAACTTCGGAAACACA 60.203 52.381 0.00 0.00 44.43 3.72
2214 2835 1.071857 AGGAGGGAACTTCGGAAACAC 59.928 52.381 0.00 0.00 42.67 3.32
2215 2836 1.430992 AGGAGGGAACTTCGGAAACA 58.569 50.000 0.00 0.00 42.67 2.83
2216 2837 2.552743 CAAAGGAGGGAACTTCGGAAAC 59.447 50.000 0.00 0.00 42.67 2.78
2217 2838 2.440253 TCAAAGGAGGGAACTTCGGAAA 59.560 45.455 0.00 0.00 42.67 3.13
2218 2839 2.038557 CTCAAAGGAGGGAACTTCGGAA 59.961 50.000 0.00 0.00 42.67 4.30
2219 2840 1.623811 CTCAAAGGAGGGAACTTCGGA 59.376 52.381 0.00 0.00 42.67 4.55
2220 2841 2.100605 CTCAAAGGAGGGAACTTCGG 57.899 55.000 0.00 0.00 42.67 4.30
2231 2852 4.338795 AGAGACATACCTCCTCAAAGGA 57.661 45.455 0.00 0.00 43.43 3.36
2232 2853 6.325028 TCAATAGAGACATACCTCCTCAAAGG 59.675 42.308 0.00 0.00 42.55 3.11
2233 2854 7.353414 TCAATAGAGACATACCTCCTCAAAG 57.647 40.000 0.00 0.00 33.76 2.77
2234 2855 7.147655 CCTTCAATAGAGACATACCTCCTCAAA 60.148 40.741 0.00 0.00 33.76 2.69
2235 2856 6.325028 CCTTCAATAGAGACATACCTCCTCAA 59.675 42.308 0.00 0.00 33.76 3.02
2236 2857 5.835819 CCTTCAATAGAGACATACCTCCTCA 59.164 44.000 0.00 0.00 33.76 3.86
2237 2858 5.245075 CCCTTCAATAGAGACATACCTCCTC 59.755 48.000 0.00 0.00 33.76 3.71
2238 2859 5.103043 TCCCTTCAATAGAGACATACCTCCT 60.103 44.000 0.00 0.00 33.76 3.69
2239 2860 5.148502 TCCCTTCAATAGAGACATACCTCC 58.851 45.833 0.00 0.00 33.76 4.30
2240 2861 6.495181 TCATCCCTTCAATAGAGACATACCTC 59.505 42.308 0.00 0.00 0.00 3.85
2241 2862 6.385443 TCATCCCTTCAATAGAGACATACCT 58.615 40.000 0.00 0.00 0.00 3.08
2242 2863 6.672266 TCATCCCTTCAATAGAGACATACC 57.328 41.667 0.00 0.00 0.00 2.73
2243 2864 7.118971 GCATTCATCCCTTCAATAGAGACATAC 59.881 40.741 0.00 0.00 0.00 2.39
2244 2865 7.164122 GCATTCATCCCTTCAATAGAGACATA 58.836 38.462 0.00 0.00 0.00 2.29
2245 2866 6.002704 GCATTCATCCCTTCAATAGAGACAT 58.997 40.000 0.00 0.00 0.00 3.06
2246 2867 5.104402 TGCATTCATCCCTTCAATAGAGACA 60.104 40.000 0.00 0.00 0.00 3.41
2247 2868 5.238214 GTGCATTCATCCCTTCAATAGAGAC 59.762 44.000 0.00 0.00 0.00 3.36
2248 2869 5.104402 TGTGCATTCATCCCTTCAATAGAGA 60.104 40.000 0.00 0.00 0.00 3.10
2249 2870 5.128205 TGTGCATTCATCCCTTCAATAGAG 58.872 41.667 0.00 0.00 0.00 2.43
2250 2871 5.114764 TGTGCATTCATCCCTTCAATAGA 57.885 39.130 0.00 0.00 0.00 1.98
2251 2872 5.840243 TTGTGCATTCATCCCTTCAATAG 57.160 39.130 0.00 0.00 0.00 1.73
2252 2873 5.452216 GCATTGTGCATTCATCCCTTCAATA 60.452 40.000 0.00 0.00 44.26 1.90
2253 2874 4.682320 GCATTGTGCATTCATCCCTTCAAT 60.682 41.667 0.00 0.00 44.26 2.57
2254 2875 3.368635 GCATTGTGCATTCATCCCTTCAA 60.369 43.478 0.00 0.00 44.26 2.69
2255 2876 2.166870 GCATTGTGCATTCATCCCTTCA 59.833 45.455 0.00 0.00 44.26 3.02
2256 2877 2.817901 GCATTGTGCATTCATCCCTTC 58.182 47.619 0.00 0.00 44.26 3.46
2257 2878 2.973694 GCATTGTGCATTCATCCCTT 57.026 45.000 0.00 0.00 44.26 3.95
2268 2889 2.164422 GGAAACTTAGGGAGCATTGTGC 59.836 50.000 0.00 0.00 45.46 4.57
2269 2890 2.755103 GGGAAACTTAGGGAGCATTGTG 59.245 50.000 0.00 0.00 0.00 3.33
2270 2891 2.378547 TGGGAAACTTAGGGAGCATTGT 59.621 45.455 0.00 0.00 0.00 2.71
2271 2892 3.085952 TGGGAAACTTAGGGAGCATTG 57.914 47.619 0.00 0.00 0.00 2.82
2272 2893 3.564352 CCTTGGGAAACTTAGGGAGCATT 60.564 47.826 0.00 0.00 0.00 3.56
2273 2894 2.024941 CCTTGGGAAACTTAGGGAGCAT 60.025 50.000 0.00 0.00 0.00 3.79
2274 2895 1.354368 CCTTGGGAAACTTAGGGAGCA 59.646 52.381 0.00 0.00 0.00 4.26
2275 2896 1.633945 TCCTTGGGAAACTTAGGGAGC 59.366 52.381 0.00 0.00 33.45 4.70
2276 2897 2.913617 AGTCCTTGGGAAACTTAGGGAG 59.086 50.000 0.00 0.00 31.38 4.30
2277 2898 2.999928 AGTCCTTGGGAAACTTAGGGA 58.000 47.619 0.00 0.00 31.38 4.20
2278 2899 3.421844 CAAGTCCTTGGGAAACTTAGGG 58.578 50.000 0.00 0.00 36.95 3.53
2279 2900 2.820197 GCAAGTCCTTGGGAAACTTAGG 59.180 50.000 8.97 0.00 40.74 2.69
2280 2901 3.753797 GAGCAAGTCCTTGGGAAACTTAG 59.246 47.826 8.97 0.00 40.74 2.18
2281 2902 3.394606 AGAGCAAGTCCTTGGGAAACTTA 59.605 43.478 8.97 0.00 40.74 2.24
2282 2903 2.175715 AGAGCAAGTCCTTGGGAAACTT 59.824 45.455 8.97 0.00 40.74 2.66
2283 2904 1.777272 AGAGCAAGTCCTTGGGAAACT 59.223 47.619 8.97 0.00 40.74 2.66
2284 2905 2.278332 AGAGCAAGTCCTTGGGAAAC 57.722 50.000 8.97 0.00 40.74 2.78
2285 2906 4.289672 AGAATAGAGCAAGTCCTTGGGAAA 59.710 41.667 8.97 0.00 40.74 3.13
2286 2907 3.846588 AGAATAGAGCAAGTCCTTGGGAA 59.153 43.478 8.97 0.00 40.74 3.97
2287 2908 3.452627 GAGAATAGAGCAAGTCCTTGGGA 59.547 47.826 8.97 0.00 40.74 4.37
2288 2909 3.432890 GGAGAATAGAGCAAGTCCTTGGG 60.433 52.174 8.97 0.00 40.74 4.12
2289 2910 3.454082 AGGAGAATAGAGCAAGTCCTTGG 59.546 47.826 8.97 0.00 40.74 3.61
2290 2911 4.161189 TCAGGAGAATAGAGCAAGTCCTTG 59.839 45.833 2.63 2.63 43.14 3.61
2291 2912 4.161377 GTCAGGAGAATAGAGCAAGTCCTT 59.839 45.833 0.00 0.00 31.84 3.36
2292 2913 3.704061 GTCAGGAGAATAGAGCAAGTCCT 59.296 47.826 0.00 0.00 34.64 3.85
2293 2914 3.490078 CGTCAGGAGAATAGAGCAAGTCC 60.490 52.174 0.00 0.00 0.00 3.85
2294 2915 3.129638 ACGTCAGGAGAATAGAGCAAGTC 59.870 47.826 0.00 0.00 0.00 3.01
2295 2916 3.093057 ACGTCAGGAGAATAGAGCAAGT 58.907 45.455 0.00 0.00 0.00 3.16
2296 2917 3.490078 GGACGTCAGGAGAATAGAGCAAG 60.490 52.174 18.91 0.00 0.00 4.01
2297 2918 2.427453 GGACGTCAGGAGAATAGAGCAA 59.573 50.000 18.91 0.00 0.00 3.91
2298 2919 2.025155 GGACGTCAGGAGAATAGAGCA 58.975 52.381 18.91 0.00 0.00 4.26
2299 2920 2.025155 TGGACGTCAGGAGAATAGAGC 58.975 52.381 18.91 0.00 0.00 4.09
2300 2921 2.032302 CGTGGACGTCAGGAGAATAGAG 59.968 54.545 18.91 0.00 33.39 2.43
2301 2922 2.014857 CGTGGACGTCAGGAGAATAGA 58.985 52.381 18.91 0.00 33.39 1.98
2302 2923 1.534175 GCGTGGACGTCAGGAGAATAG 60.534 57.143 18.91 0.00 42.22 1.73
2303 2924 0.454600 GCGTGGACGTCAGGAGAATA 59.545 55.000 18.91 0.00 42.22 1.75
2304 2925 1.215647 GCGTGGACGTCAGGAGAAT 59.784 57.895 18.91 0.00 42.22 2.40
2305 2926 2.197605 TGCGTGGACGTCAGGAGAA 61.198 57.895 18.91 0.00 42.22 2.87
2306 2927 2.596338 TGCGTGGACGTCAGGAGA 60.596 61.111 18.91 0.00 42.22 3.71
2307 2928 2.430921 GTGCGTGGACGTCAGGAG 60.431 66.667 18.91 6.54 42.22 3.69
2308 2929 4.337060 CGTGCGTGGACGTCAGGA 62.337 66.667 18.91 6.46 42.22 3.86
2309 2930 3.626680 ATCGTGCGTGGACGTCAGG 62.627 63.158 18.91 10.18 42.22 3.86
2310 2931 2.126463 ATCGTGCGTGGACGTCAG 60.126 61.111 18.91 9.16 42.22 3.51
2311 2932 2.430075 CATCGTGCGTGGACGTCA 60.430 61.111 18.91 0.27 42.22 4.35
2312 2933 3.838795 GCATCGTGCGTGGACGTC 61.839 66.667 13.46 7.13 42.22 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.