>input_sequence_83324
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-------------ATGGGGTGGCTGCGGTCGCTCATGGCGCCCATCAAGAAGCTCTGGATTCGCGTGCATTCCGCGCAGA
AGAAGAGTATGTTCGCTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTTGTTCTGATCGTCTATTCTTTCAAACTG
CTCTGGTTTGCGAAACTCAGATTCTGATTCTGCGTGGTGCTGATCGTTGCTTTTGGTTGTGTGGTGGTAACAGAGAGAGG
GATCTACATCCTGTACGAGGACGTCAAGTCGTGCCCGTGCGAGGACGTGCAGATCCTCTGGTCCATCCTCGTCGAGTCCC
ACCCGCCGCCGCCGCTGCGGCTGAAGCAGTGA------------------------------------------------
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>chr2D_1_TraesCS2D01G204200
CAGTGCCACGCCCTGTTCAGTGCTCACCGACGG---------------------------TGGCTGTTGTGTCACTGAGA
CGTGCAAAAATGCATAGCAGTAGCAGGAGCTGCTCGTCATACAGATACAGGCGCAGGAG-AGGGCGCCACGCCGACGGCC
TGGCGAATGATTTGCCACGTTCGGAACGATGAAATCCTGCTGAAATGCCAATGTTCCAAGCGTGGTTTCTGTCTCTCCA-
---CAAAGCAGTGGAGCCATGGACGAATGGACTCGTGGCTCGTTTTGCCGACAGCGTAGGCCACGGCGGCCATAAAGCTT
AAATAAGACCTGACCTGACAGGGCCGAGGGGACACCCTTCC-GTTTTCTCCTCGACTAATAATAAGATGAGAAAACTGAA
AAATTGGCGCGACCGAACGAGCGCAACGCTCCTGCGCCAATTCGATCGTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAAGGGAAGCCCGGCAACGTGATGTTATGAATAGTGGCCG----------AGCCGAGCAGCGGCAGAGACTT
ACTTCACAGGGCCTCAAAGCGACTCCATCTCTTCCCCCTCACGTCTCC---TCCTCGTCCCTTCTACAAGATAGCTTGGC
GTTGCTATTTCATCTCGTCTCCCGGCTGATCAGTGCACGCACGAGCAGGGCGGCCGGGGGAGA-------GAGCTCAGCT
TAGGGTCTCGTTCATGGGGTGGCTGCGGTCGCTCATGGCGCCCATCAAGAAGCTCTGGATTCGCGTGCATTCCGCGCAGA
AGAAGAGTATGTTCGCTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTTGTTCTGATCGTCTATTCTTTCAAACTG
CTCTGGTTTGCGAAACTCAGATTCTGATTCTGCGTGGTGCTGATCGTTGCTTTTGGTTGTGTGGTGGTAACAGAGAGAGG
GATCTACATCCTGTACGAGGACGTCAAGTCGTGCCCGTGCGAGGACGTGCAGATCCTCTGGTCCATCCTCGTCGAGTCCC
ACCCGCCGCCGCCGCTGCGGCTGAAGCAGTGATCGACCGGACGGCCGGTCCCCTGCCGCCGTCCGTCGATCGAGCACGGC
GCTCCGACGTACCGATGGCCTCCCGGCGGCAGCCTACCGACCCCGGCATGCTTCGACAGGCTGTCGGTGGCTCGGTGTAG
TGTGCATAAAGATGAT----GGAGCGAGCAGCAGTTCCGTGTCGCCATGATAGTAGAAAAGTAGGTGTTCCCTCGGCCTC
TCCCTTGTGAGCCACGGAAATGGCGTGCGTGCGTGCATGGCCGGTGAGCTCCCCTCTCGCTCGCATCGCATGTGTCCTTC
ACCGACACTGCGGTTCTGTGAAGCAAGGTTTTTTTTTC----------------TTTTCTCTTCTTTCTTCTTTTCCTTT
TTGGAAAAAAAGGGGAAGGCACGTGTAAGGCTCGGTTGGTGGCCCGGGTCAATGGCCGCGCGTGCCTGTATTATCATCTT
GTAAATACGAGAGAG-ATACGAGTGAGAAGGCTGTAAGCACCAGACACGAGCGATGATGGTGTTGAGGGAAAAGAATTGT
GAGTGTGGCATTGA-------------TAGATGGCCTGATTGATCCTGTGCTCCCTGTGGCTCGCGTGCAAGGGAGGTGG
GCGTGGTTTGACCTGACCACCGCGC-CACACGTAGTGCGTGTGTGTGGGGGATGGGTGAGCGCGCGCACGGGTG------
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----------------------------------------------GCGTGGTTAATGCCGTGGCCGGACCGGGGATTGT
TTTCGTCGGCCCGTGCGGTTGCAGGTTCATTGGTCGACGTCGGGGTGGTTGGTTGCTTCCGAGGGTCCGTCTGCCGCCGC
TTCGTCGTCATCATCGGGATGGGTTCGCCGTGTCCGCTGCTTCCAGCTGAGACGGGGAGGAGCACGAAGTAAAGGATATA
TGTGACCACAAGTGGAGACGATGAAGACGAGGATGTGTTTCCGAAGTTCCCTCCTTTGAGGAGGTATGTCTCTATTGAAG
GGATGAATGCACAATGCTCCCTAAGTTTCCCAAGGACTTGCTCTATTCTCCTGACGTCCACGCACGATGCAAGGCGCTA
>chr2A_3
--GTGCCACGCCCTGTTCAGTGCTCACCGACGGGGAAAATGGCATGATTTTGTTGTGTGGTGGCTGCTGTGTCACTGAGA
CGTGCAAAAATGCATAGCAGTAGTC-------------------ATACAGGAGCAGGAGAAGGGCGCCACGCCGACGGCC
TGGCGAACGATTTCCCACGTTCGGAACGATGAAACCCTGCTGAAATGCCAATGTTCCGAGCGTGGCTTCTGTCTGTCTCT
CCCCAAAGCAGTGGAGCCATGGACGAATGGACTCCTGGCTCGTTCTGCCGACAGCGTAGGCCACGGCGGCCATAAAGCTT
AAATAAGACCTGACCTGACAGGGCCGAGGGGACACCCTTTCTGTTTTCTCCTCGACTGATAATAAGACGAGAAAATTGAA
AAATTGGC-------------------------GCGCCAATTCGTTTGTTTATTATTATTCATTGGTATTCGTAGGGGCA
GATATGGATGGATGGCGACGCGGCACCAAGAGCGTTAAAGCCTATGATTAGGATA-------------------------
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--------CAAGGGAAGCCCGGCAACGTGATGTTATGAATAGTGGCCGAGCCG-----AGCCAAGCAGCGGCAGAGACTT
ACTTCACAGGGCCTCAAAGCGACTCCGTCTCTTCCCCCTCACGTCTCCTCCTCCTCGTCCCTTCTACAAGGTAGCTTGGC
GTTGCTATTTCATCTCGTCTCCCGGCTGGTCAGTGCACGCACGAGCAGGGCAAAACGGGGGGGAGTGCTCGTGCTCAGCT
GAGGGTCTCGCTCATGGGGTGGCTGCGGTCGCTCATGGCGCCCATCAAGAAGCTCTGGATTCGCGTGCATTCCGCGCAGA
AGAAGAGTATGTTCCTTCGTCTCTCTCTGCACTCTG------------------------------TTTCTTCCAGATTG
CTCCTGTTTGTGAAT-TCTGATTCTGATTCTGCGTGGTGCTGATCGTTGCTTTTGGTTGTGTGGTGGTAACAGAGAGAGG
GATCTACATCCTGTACGAGGACGTCAAGTCGTGCCCGTGCGAGGACGTGCAGATCCTCTGGTCCATCCTCGTCGAGTCCC
ACCCGCCGCCGCCGCTGCGGCTGAAGCAGTGATGGACCGGCCGGCCGGT-CCCTGCCGCCGTCCGTCGATCGAGCACGGC
GCTCCGACGTACCGATGGCCTCCCGGCGGCAGCCTACCGATCCCG----------ACAGACTGTCGGTGGCTCGGTGTAG
TGTACATAAAGATGATCGAGCGAGCGAGCGGCAGTTCCGTGTCGCCATGATAGTAGGAAAGTAGGTGTCCCCTCGGCCTC
TCCCTTGTGAGCCACGGAAATGGCGTGCGTGCGTGCATGGCCGGTGAGCTCCCCTCTCGCG-----CGCATGTGTCCTTC
ACCGACACTGCGACTCTGTGAAGCAA-GTTTTTTTTTCTTCCTCCTCCCGTTTCTTTTCTCTTCTTTCTTATTTTCCTTT
TTGGAAAAAAAGGGGA-AGCACGTGTAAGGCCTGGTTGGTGGCCCGGGTCAATGGCCGCGCGTGCCTGTATTATCATCTT
GTAAATACGAGAGAGGATACGAGTGAGAAGGCTGTATACACCGGTGAG------TGATGGTGTCGAGGAAAAAGAATTGT
GAGTGTGGCATTGAAAGATGGGGTTGAAAGATGGCCTGATTGATGCTCTGTTCCCTGTGGCTCGCGTGCAGGGGAGGTGG
GCGTGGTTTGACCTGACCACAGCGCGCACACGTAGTACGTGCGTGTGGGGGATGGGTGAGCGCGCGCACGGGTG------
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----------------------------------------------GCGTGGTTAATGCCGGGGCCGGACCGGGGATCGT
TTTCGTCGGCCCGTGCGGTTGCAGGCTCATTGGTCGACGTCGGGGTGGTTGGTTTGTTCCGAG-----------------
TTCGCCGTCATCATCGGGATGGGTTCGCCGTGTCCGCTGCTTCCAGCTGAGACGGGGAGGAGCACG--------------
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>chr2B_3
--GTGCCACGCCCTGTTCAGTGCTCACCGACGGGCAAAAATGCCATGA----TTGCGTGGTGGCTGTTGTGTAACTGGGA
CGTGCAAA--TGCCTAGCAGTAGCAGGAGCTGCTCGTCATACAGATACAGGAGCAGGAGAAGGGCGCCACGCCGACGGCC
TGGCGAGTAATTTGCCACGTTCGGAACGATGAA-CCCTGCTGAAATGCCAATGTTCCAAGCGTGGTTTCTGTCTCTCCA-
---CAAAGCAGTGGAGCCACGGACGAATGGACTCCTGGCTCGTTTTGCCGACAGCGTAGGCCACGGCGGCCATAAAGCTT
AAATAAGACCTGACCTGACAGGGCCGAGGGGACACCCTTCCG--TTTCTCCTCGACTAATAATAAGATGAGAAAACAGAA
AAATTGGCGCGACCGAACGAGCGCAACGCTTCTGCGCCAATTCGTTTGTTTATTACATTATTC----ATCCGTAGGGGGA
GATATGGATGGATGGCGACGCGGCACCAAGAGCGTTAAAGCCTATGATTAGGATA-------------------------
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--------CAAGGGAAGCCCGGCAACGTGATGTTATGAATAGTGGCCGAGCCGGGCAGAGCCAAGCAGGGGCAGGGACTT
ACTTCACAGAGCCTCAAAGCGACTCCATCTCTTCCCCCTCACGTCTCCTCCTCGT-GTCCCTTCTACAAGATAGCTTGGC
GTTGCTATTTCATCTCGTCTCCCGGCTGGTCAGTGCACG----AGCAGGGCGGCTGGGGGAGA-------GTGCTCAGCT
CAGGGTCTCGTTCATGGGGTGGCTGCGGTCGCTCATGGCGCCCATCAAGAAGCTCTGGATTCGCGTGCATTCCGCGCAGA
AGAAGAGTATGTTCGCTCGTCTCTCTCTCTCTCTGTCTCTCCGCG-------------------CTTTGCTTTCAGATTG
CTCTTGTTTGCAAAATTCAGA----------------TGCTGATTGTCGCTTTTGGTTGTGTGGTGGTAACAGAGAGAGG
GATCTACATCCTGTACGAGGACGTCAAGTCGTGCCCGTGTGAGGACGTGCAGATCCTCTGGTCCATCCTCGTCGAGTCCC
ACCCGCCGCCGCCGCTGCGGCTGAAGCAGTGATCGACCGGCCGGCCGGT-CCCTGCCGCCGTCCGTCGATCGAGCACGGC
GCTCCGACGTACCGATGGCCTCCCGGCGGCA----ACCGATCCCGACATGCTTCGACTGACTGTCGGTGGCTCGTTCTAG
TGTACATAAAGATGAT----CGAGCGAGCGGCAGTTCCGTGTCGCCATGATAGTAGAAAAGTAGGTGTTCCCTCGGCCTC
TCCCTTGTGAGC-ACGGAAATG--------GCGTGCATGGCCGGTGAGCTCCCCTCTCGCTAGCATCGCATGTGTCCTTC
ACCGACACTGCGATTCTGCGAAGCAAGGTTTTTTTTTCT---------------TTTTCTCTTCTTTCTTCTTTTCCTTT
TTGGAAAAAAGGGGGA-GGCACGTGTAAGGCTCGGTTGGTGGCCCGGGTCAATGGCCGCGCGTGCCTGTAT---------
------------------ACGAGAGAGAAGGCTGTAAGCACCAGACACCGGCGATGATGGTGTTGAGGGAAAAGAATTGT
GAGTGTGGCATTGA-------------AAGATGGCTTGATTGATCCTGTGTTCCCTGTGGCTCGCGTGCAAGGGAGGTAG
GCGTGATTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGTGGTTAATGCCTGGGCCGGACCGGGGATTGT
TTTCGTCGGCCCGTGCGGTTGCAGGTTCATTGGTCGACGTCGGGGTAGTTGGTTGGTTCCGAGGGTCCGTCGGCCGCCG-
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>SNPs
SS------------------------------------------------------------------------------
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------------------------------S-------------S-S----S-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------S-----------------
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----------------------------S-------------------------S----------------S--------
S-------------------------------------------------------------------------------
----------------------------------S------SSSSSSSSSSSSSSSSSSSSSSS--S--------S-S--
----S----------S----------------------------------------------------------------
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----------------------------------------S--------S------------------------------
----------------------------------------S----S-------------S--------------------
---S----------------S--------S--------------------------------------------------
-------------------------------------------------------------S------------------
------------S-------------------------------------------------------------------
----------------S---------------------------------------------------------------
------------------------------------------------SS------------------------------
---------------------------S----------------------S-----------------------------
--------------------S---------------S----S--------------------------------------
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-------------------------------------------------------------S------------------
-------------------------------------------------------S---------------S-------S
----S-------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_452
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--------------------------------TGCGCCAATTCGATCGTTTG----------------------------
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>reverse_2801
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TGTGACCACAAGTGGAGACG------------------------------------------------------------
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