Multiple sequence alignment - TraesCS2D01G197600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G197600 chr2D 100.000 3849 0 0 1 3849 145364993 145361145 0.000000e+00 7108
1 TraesCS2D01G197600 chr2D 98.471 327 2 1 1 324 112884544 112884870 1.200000e-159 573
2 TraesCS2D01G197600 chr2D 83.406 229 19 13 632 850 145374078 145373859 1.090000e-45 195
3 TraesCS2D01G197600 chr2A 92.631 1547 57 25 468 1962 156666270 156667811 0.000000e+00 2172
4 TraesCS2D01G197600 chr2A 91.524 1286 52 18 1965 3221 156667856 156669113 0.000000e+00 1718
5 TraesCS2D01G197600 chr2A 87.218 532 34 15 3341 3849 156669277 156669797 3.330000e-160 575
6 TraesCS2D01G197600 chr2B 89.834 1505 70 45 608 2041 202921892 202920400 0.000000e+00 1855
7 TraesCS2D01G197600 chr2B 90.409 1199 48 29 2040 3225 202920360 202919216 0.000000e+00 1515
8 TraesCS2D01G197600 chr2B 90.123 567 21 9 3274 3814 202918852 202918295 0.000000e+00 704
9 TraesCS2D01G197600 chr2B 91.667 108 6 1 355 459 202931483 202931376 3.100000e-31 147
10 TraesCS2D01G197600 chr2B 81.579 152 14 9 700 850 202951846 202951708 3.140000e-21 113
11 TraesCS2D01G197600 chr2B 93.333 75 2 2 500 571 202931391 202931317 1.460000e-19 108
12 TraesCS2D01G197600 chr5D 98.471 327 2 1 1 324 431824801 431825127 1.200000e-159 573
13 TraesCS2D01G197600 chr5D 97.281 331 8 1 1 331 491813213 491812884 9.340000e-156 560
14 TraesCS2D01G197600 chr3D 98.471 327 2 1 1 324 526057562 526057236 1.200000e-159 573
15 TraesCS2D01G197600 chr1B 81.806 742 77 34 982 1704 626308569 626309271 1.550000e-158 569
16 TraesCS2D01G197600 chr4D 97.313 335 6 2 1 333 493798874 493798541 2.010000e-157 566
17 TraesCS2D01G197600 chr1D 98.154 325 5 1 1 324 41898152 41897828 2.010000e-157 566
18 TraesCS2D01G197600 chr1D 98.154 325 5 1 1 324 415653554 415653230 2.010000e-157 566
19 TraesCS2D01G197600 chr7D 97.305 334 4 3 1 329 634151243 634151576 2.600000e-156 562
20 TraesCS2D01G197600 chrUn 95.751 353 5 5 1 347 24257584 24257932 9.340000e-156 560
21 TraesCS2D01G197600 chr4A 87.686 471 37 7 1098 1568 703411294 703411743 2.630000e-146 529
22 TraesCS2D01G197600 chr3B 86.458 480 38 6 1098 1577 703847966 703848418 5.740000e-138 501
23 TraesCS2D01G197600 chr3A 86.042 480 40 6 1098 1577 259838143 259838595 1.240000e-134 490
24 TraesCS2D01G197600 chr3A 85.000 480 45 10 1098 1577 451658018 451658470 2.710000e-126 462
25 TraesCS2D01G197600 chr3A 85.115 477 44 10 1101 1577 451665004 451664555 2.710000e-126 462
26 TraesCS2D01G197600 chr5B 78.173 197 23 10 2242 2430 550933745 550933561 1.460000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G197600 chr2D 145361145 145364993 3848 True 7108.000000 7108 100.000000 1 3849 1 chr2D.!!$R1 3848
1 TraesCS2D01G197600 chr2A 156666270 156669797 3527 False 1488.333333 2172 90.457667 468 3849 3 chr2A.!!$F1 3381
2 TraesCS2D01G197600 chr2B 202918295 202921892 3597 True 1358.000000 1855 90.122000 608 3814 3 chr2B.!!$R2 3206
3 TraesCS2D01G197600 chr1B 626308569 626309271 702 False 569.000000 569 81.806000 982 1704 1 chr1B.!!$F1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.033503 AAAGGCCCTTATGAACCGGG 60.034 55.0 6.32 0.0 41.06 5.73 F
373 374 0.034477 AAGGGATTACAGTTGCCGGG 60.034 55.0 2.18 0.0 0.00 5.73 F
2171 2367 0.037734 TGTAGCTCTCCGTGTCTCCA 59.962 55.0 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2149 0.040499 TGTCCTACCCCAAATTGCCC 59.960 55.0 0.0 0.0 0.0 5.36 R
2369 2566 0.106149 ATCGGGGCAGGATCGTAAAC 59.894 55.0 0.0 0.0 0.0 2.01 R
3499 4066 0.035056 ACTCCACTTGTAGCCATGCC 60.035 55.0 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.878737 TCTCTAATAGCTACCTAATAACAACCT 57.121 33.333 0.00 0.00 0.00 3.50
42 43 8.827832 ACCTAATAACAACCTAAATTAACCCC 57.172 34.615 0.00 0.00 0.00 4.95
43 44 7.840716 ACCTAATAACAACCTAAATTAACCCCC 59.159 37.037 0.00 0.00 0.00 5.40
57 58 3.569849 CCCCCAAAACCCCCAAAC 58.430 61.111 0.00 0.00 0.00 2.93
58 59 2.150719 CCCCCAAAACCCCCAAACC 61.151 63.158 0.00 0.00 0.00 3.27
59 60 2.150719 CCCCAAAACCCCCAAACCC 61.151 63.158 0.00 0.00 0.00 4.11
60 61 2.150719 CCCAAAACCCCCAAACCCC 61.151 63.158 0.00 0.00 0.00 4.95
61 62 2.150719 CCAAAACCCCCAAACCCCC 61.151 63.158 0.00 0.00 0.00 5.40
91 92 4.391405 AAAACAAAAACCTCAGCTCCTG 57.609 40.909 0.00 0.00 0.00 3.86
92 93 1.322442 ACAAAAACCTCAGCTCCTGC 58.678 50.000 0.00 0.00 40.05 4.85
93 94 0.600057 CAAAAACCTCAGCTCCTGCC 59.400 55.000 0.00 0.00 40.80 4.85
94 95 0.185901 AAAAACCTCAGCTCCTGCCA 59.814 50.000 0.00 0.00 40.80 4.92
95 96 0.251077 AAAACCTCAGCTCCTGCCAG 60.251 55.000 0.00 0.00 40.80 4.85
96 97 2.134630 AAACCTCAGCTCCTGCCAGG 62.135 60.000 3.69 3.69 42.51 4.45
97 98 3.007920 CCTCAGCTCCTGCCAGGT 61.008 66.667 11.27 0.00 40.80 4.00
98 99 2.268280 CTCAGCTCCTGCCAGGTG 59.732 66.667 11.27 9.77 42.29 4.00
103 104 2.046507 CTCCTGCCAGGTGCTGAC 60.047 66.667 11.27 0.00 41.11 3.51
104 105 3.947132 CTCCTGCCAGGTGCTGACG 62.947 68.421 11.27 0.00 41.11 4.35
110 111 4.662961 CAGGTGCTGACGCGTGGA 62.663 66.667 20.70 0.00 38.27 4.02
111 112 3.695606 AGGTGCTGACGCGTGGAT 61.696 61.111 20.70 0.00 39.65 3.41
112 113 3.490759 GGTGCTGACGCGTGGATG 61.491 66.667 20.70 4.59 39.65 3.51
113 114 4.152625 GTGCTGACGCGTGGATGC 62.153 66.667 20.70 15.70 39.65 3.91
116 117 2.494445 CTGACGCGTGGATGCCTA 59.506 61.111 20.70 0.00 0.00 3.93
117 118 1.068083 CTGACGCGTGGATGCCTAT 59.932 57.895 20.70 0.00 0.00 2.57
118 119 0.530650 CTGACGCGTGGATGCCTATT 60.531 55.000 20.70 0.00 0.00 1.73
119 120 0.809636 TGACGCGTGGATGCCTATTG 60.810 55.000 20.70 0.00 0.00 1.90
120 121 1.498865 GACGCGTGGATGCCTATTGG 61.499 60.000 20.70 0.00 0.00 3.16
121 122 1.523711 CGCGTGGATGCCTATTGGT 60.524 57.895 0.00 0.00 35.27 3.67
122 123 1.498865 CGCGTGGATGCCTATTGGTC 61.499 60.000 0.00 0.00 35.27 4.02
123 124 1.166531 GCGTGGATGCCTATTGGTCC 61.167 60.000 0.00 0.00 35.27 4.46
124 125 0.535102 CGTGGATGCCTATTGGTCCC 60.535 60.000 1.28 0.00 35.27 4.46
125 126 0.535102 GTGGATGCCTATTGGTCCCG 60.535 60.000 1.28 0.00 35.27 5.14
126 127 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
127 128 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
128 129 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
129 130 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
130 131 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
131 132 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
132 133 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
133 134 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
134 135 2.487274 TATTGGTCCCGGTTGGTGGC 62.487 60.000 0.00 0.00 34.77 5.01
139 140 4.939368 CCCGGTTGGTGGCACGAA 62.939 66.667 11.22 11.22 0.00 3.85
140 141 3.656045 CCGGTTGGTGGCACGAAC 61.656 66.667 30.07 30.07 36.30 3.95
142 143 3.656045 GGTTGGTGGCACGAACCG 61.656 66.667 37.28 0.00 44.79 4.44
143 144 3.656045 GTTGGTGGCACGAACCGG 61.656 66.667 28.47 0.00 40.86 5.28
144 145 4.939368 TTGGTGGCACGAACCGGG 62.939 66.667 11.22 0.00 40.86 5.73
149 150 4.629523 GGCACGAACCGGGACCAA 62.630 66.667 6.32 0.00 28.34 3.67
150 151 2.592287 GCACGAACCGGGACCAAA 60.592 61.111 6.32 0.00 28.17 3.28
151 152 2.613506 GCACGAACCGGGACCAAAG 61.614 63.158 6.32 0.00 28.17 2.77
152 153 1.964373 CACGAACCGGGACCAAAGG 60.964 63.158 6.32 0.00 28.17 3.11
153 154 3.053896 CGAACCGGGACCAAAGGC 61.054 66.667 6.32 0.00 0.00 4.35
154 155 2.675423 GAACCGGGACCAAAGGCC 60.675 66.667 6.32 0.00 0.00 5.19
155 156 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
157 158 4.426313 CCGGGACCAAAGGCCCTC 62.426 72.222 0.00 0.00 37.05 4.30
158 159 4.426313 CGGGACCAAAGGCCCTCC 62.426 72.222 0.00 0.00 37.05 4.30
160 161 2.356667 GGACCAAAGGCCCTCCTG 59.643 66.667 0.00 0.00 43.40 3.86
161 162 2.361737 GACCAAAGGCCCTCCTGC 60.362 66.667 0.00 0.00 43.40 4.85
197 198 2.344500 CCACGTGGACGGCCTTTA 59.656 61.111 31.31 0.00 44.95 1.85
198 199 1.740296 CCACGTGGACGGCCTTTAG 60.740 63.158 31.31 0.00 44.95 1.85
199 200 1.005394 CACGTGGACGGCCTTTAGT 60.005 57.895 9.82 0.00 44.95 2.24
200 201 1.012486 CACGTGGACGGCCTTTAGTC 61.012 60.000 9.82 0.00 44.95 2.59
204 205 2.186125 GACGGCCTTTAGTCCCGG 59.814 66.667 0.00 0.00 45.93 5.73
205 206 2.605601 ACGGCCTTTAGTCCCGGT 60.606 61.111 0.00 0.00 45.93 5.28
206 207 2.176314 GACGGCCTTTAGTCCCGGTT 62.176 60.000 0.00 0.00 45.93 4.44
207 208 1.449070 CGGCCTTTAGTCCCGGTTC 60.449 63.158 0.00 0.00 38.42 3.62
208 209 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
209 210 1.294459 GCCTTTAGTCCCGGTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
210 211 1.017701 GCCTTTAGTCCCGGTTCGTG 61.018 60.000 0.00 0.00 0.00 4.35
211 212 0.319405 CCTTTAGTCCCGGTTCGTGT 59.681 55.000 0.00 0.00 0.00 4.49
212 213 1.545582 CCTTTAGTCCCGGTTCGTGTA 59.454 52.381 0.00 0.00 0.00 2.90
213 214 2.029110 CCTTTAGTCCCGGTTCGTGTAA 60.029 50.000 0.00 0.00 0.00 2.41
214 215 3.248266 CTTTAGTCCCGGTTCGTGTAAG 58.752 50.000 0.00 0.00 0.00 2.34
215 216 2.198827 TAGTCCCGGTTCGTGTAAGA 57.801 50.000 0.00 0.00 0.00 2.10
216 217 1.331214 AGTCCCGGTTCGTGTAAGAA 58.669 50.000 0.00 0.00 0.00 2.52
222 223 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
223 224 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
224 225 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
225 226 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
226 227 2.513753 TCGTGTAAGAACCGGGACTAA 58.486 47.619 6.32 0.00 0.00 2.24
227 228 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
228 229 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
229 230 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
230 231 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
231 232 0.327259 AAGAACCGGGACTAAAGGGC 59.673 55.000 6.32 0.00 0.00 5.19
232 233 0.546988 AGAACCGGGACTAAAGGGCT 60.547 55.000 6.32 0.00 0.00 5.19
233 234 1.197812 GAACCGGGACTAAAGGGCTA 58.802 55.000 6.32 0.00 0.00 3.93
234 235 1.138464 GAACCGGGACTAAAGGGCTAG 59.862 57.143 6.32 0.00 0.00 3.42
235 236 0.690077 ACCGGGACTAAAGGGCTAGG 60.690 60.000 6.32 0.00 0.00 3.02
236 237 1.408453 CCGGGACTAAAGGGCTAGGG 61.408 65.000 0.00 0.00 0.00 3.53
237 238 1.837789 GGGACTAAAGGGCTAGGGC 59.162 63.158 0.00 0.00 37.82 5.19
238 239 0.986550 GGGACTAAAGGGCTAGGGCA 60.987 60.000 0.00 0.00 40.87 5.36
239 240 1.141185 GGACTAAAGGGCTAGGGCAT 58.859 55.000 0.00 0.00 40.87 4.40
240 241 1.495148 GGACTAAAGGGCTAGGGCATT 59.505 52.381 0.00 0.00 40.87 3.56
241 242 2.709397 GGACTAAAGGGCTAGGGCATTA 59.291 50.000 0.00 0.00 40.87 1.90
242 243 3.244596 GGACTAAAGGGCTAGGGCATTAG 60.245 52.174 11.36 11.36 40.87 1.73
243 244 3.391626 GACTAAAGGGCTAGGGCATTAGT 59.608 47.826 15.56 15.56 41.69 2.24
244 245 4.563782 ACTAAAGGGCTAGGGCATTAGTA 58.436 43.478 14.68 0.00 39.59 1.82
245 246 4.973211 ACTAAAGGGCTAGGGCATTAGTAA 59.027 41.667 14.68 0.00 39.59 2.24
246 247 3.859061 AAGGGCTAGGGCATTAGTAAC 57.141 47.619 0.00 0.00 40.87 2.50
247 248 1.692519 AGGGCTAGGGCATTAGTAACG 59.307 52.381 0.00 0.00 40.87 3.18
248 249 1.690352 GGGCTAGGGCATTAGTAACGA 59.310 52.381 0.00 0.00 40.87 3.85
249 250 2.547430 GGGCTAGGGCATTAGTAACGAC 60.547 54.545 0.00 0.00 40.87 4.34
250 251 2.547430 GGCTAGGGCATTAGTAACGACC 60.547 54.545 0.00 0.00 40.87 4.79
251 252 2.547430 GCTAGGGCATTAGTAACGACCC 60.547 54.545 0.00 3.07 38.54 4.46
252 253 1.875488 AGGGCATTAGTAACGACCCT 58.125 50.000 11.72 11.72 42.97 4.34
253 254 2.193993 AGGGCATTAGTAACGACCCTT 58.806 47.619 11.72 0.48 45.55 3.95
254 255 2.574824 AGGGCATTAGTAACGACCCTTT 59.425 45.455 11.72 0.00 45.55 3.11
255 256 3.776417 AGGGCATTAGTAACGACCCTTTA 59.224 43.478 11.72 0.00 45.55 1.85
256 257 4.124970 GGGCATTAGTAACGACCCTTTAG 58.875 47.826 8.75 0.00 34.34 1.85
257 258 4.383444 GGGCATTAGTAACGACCCTTTAGT 60.383 45.833 8.75 0.00 34.34 2.24
258 259 4.807834 GGCATTAGTAACGACCCTTTAGTC 59.192 45.833 0.00 0.00 0.00 2.59
259 260 4.807834 GCATTAGTAACGACCCTTTAGTCC 59.192 45.833 0.00 0.00 32.91 3.85
260 261 5.354767 CATTAGTAACGACCCTTTAGTCCC 58.645 45.833 0.00 0.00 32.91 4.46
261 262 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
262 263 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
263 264 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
264 265 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
265 266 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
266 267 0.251354 GACCCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 0.00 3.62
267 268 0.178882 ACCCTTTAGTCCCGGTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
268 269 0.252197 CCCTTTAGTCCCGGTTCCTG 59.748 60.000 0.00 0.00 0.00 3.86
269 270 1.272807 CCTTTAGTCCCGGTTCCTGA 58.727 55.000 0.00 0.00 0.00 3.86
270 271 1.626825 CCTTTAGTCCCGGTTCCTGAA 59.373 52.381 0.00 0.00 0.00 3.02
271 272 2.614734 CCTTTAGTCCCGGTTCCTGAAC 60.615 54.545 0.00 1.33 40.45 3.18
281 282 2.845363 GTTCCTGAACCGGGACTAAA 57.155 50.000 6.32 0.00 38.83 1.85
282 283 2.696506 GTTCCTGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 38.83 1.85
283 284 1.272807 TCCTGAACCGGGACTAAAGG 58.727 55.000 6.32 3.89 33.41 3.11
284 285 0.392595 CCTGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 29.82 4.35
285 286 0.392595 CTGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
286 287 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
287 288 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
288 289 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
289 290 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
290 291 1.137697 CCGGGACTAAAGGCCCTTAT 58.862 55.000 18.97 0.00 42.40 1.73
291 292 1.202770 CCGGGACTAAAGGCCCTTATG 60.203 57.143 18.97 3.00 42.40 1.90
292 293 1.766496 CGGGACTAAAGGCCCTTATGA 59.234 52.381 18.97 0.00 42.40 2.15
293 294 2.171870 CGGGACTAAAGGCCCTTATGAA 59.828 50.000 18.97 0.00 42.40 2.57
294 295 3.552875 GGGACTAAAGGCCCTTATGAAC 58.447 50.000 14.19 0.00 41.31 3.18
295 296 3.552875 GGACTAAAGGCCCTTATGAACC 58.447 50.000 0.00 0.00 0.00 3.62
296 297 3.203716 GACTAAAGGCCCTTATGAACCG 58.796 50.000 0.00 0.00 0.00 4.44
297 298 2.092592 ACTAAAGGCCCTTATGAACCGG 60.093 50.000 0.00 0.00 0.00 5.28
298 299 0.033503 AAAGGCCCTTATGAACCGGG 60.034 55.000 6.32 0.00 41.06 5.73
299 300 1.933307 AAGGCCCTTATGAACCGGGG 61.933 60.000 6.32 0.00 41.64 5.73
300 301 2.686572 GGCCCTTATGAACCGGGGT 61.687 63.158 6.32 0.00 40.86 4.95
301 302 1.347243 GGCCCTTATGAACCGGGGTA 61.347 60.000 6.32 0.00 40.86 3.69
302 303 0.547553 GCCCTTATGAACCGGGGTAA 59.452 55.000 6.32 0.00 40.86 2.85
303 304 1.064537 GCCCTTATGAACCGGGGTAAA 60.065 52.381 6.32 0.00 40.86 2.01
304 305 2.621147 GCCCTTATGAACCGGGGTAAAA 60.621 50.000 6.32 0.00 40.86 1.52
305 306 3.284617 CCCTTATGAACCGGGGTAAAAG 58.715 50.000 6.32 3.70 34.22 2.27
306 307 2.686405 CCTTATGAACCGGGGTAAAAGC 59.314 50.000 6.32 0.00 0.00 3.51
307 308 2.423446 TATGAACCGGGGTAAAAGCC 57.577 50.000 6.32 0.00 34.31 4.35
308 309 0.702316 ATGAACCGGGGTAAAAGCCT 59.298 50.000 6.32 0.00 35.71 4.58
309 310 0.037160 TGAACCGGGGTAAAAGCCTC 59.963 55.000 6.32 0.00 35.71 4.70
310 311 0.327259 GAACCGGGGTAAAAGCCTCT 59.673 55.000 6.32 0.00 35.71 3.69
311 312 0.775542 AACCGGGGTAAAAGCCTCTT 59.224 50.000 6.32 0.00 35.71 2.85
312 313 0.775542 ACCGGGGTAAAAGCCTCTTT 59.224 50.000 6.32 0.00 35.71 2.52
313 314 1.146359 ACCGGGGTAAAAGCCTCTTTT 59.854 47.619 6.32 9.19 35.71 2.27
314 315 1.816835 CCGGGGTAAAAGCCTCTTTTC 59.183 52.381 7.70 1.85 35.71 2.29
315 316 1.816835 CGGGGTAAAAGCCTCTTTTCC 59.183 52.381 7.70 8.96 35.71 3.13
316 317 2.554564 CGGGGTAAAAGCCTCTTTTCCT 60.555 50.000 7.70 0.00 35.71 3.36
317 318 3.307904 CGGGGTAAAAGCCTCTTTTCCTA 60.308 47.826 7.70 0.00 35.71 2.94
318 319 4.015084 GGGGTAAAAGCCTCTTTTCCTAC 58.985 47.826 7.70 2.38 35.71 3.18
319 320 4.263816 GGGGTAAAAGCCTCTTTTCCTACT 60.264 45.833 7.70 0.00 35.71 2.57
320 321 5.045359 GGGGTAAAAGCCTCTTTTCCTACTA 60.045 44.000 7.70 0.00 35.71 1.82
321 322 6.114089 GGGTAAAAGCCTCTTTTCCTACTAG 58.886 44.000 7.70 0.00 31.81 2.57
322 323 6.296317 GGGTAAAAGCCTCTTTTCCTACTAGT 60.296 42.308 7.70 0.00 31.81 2.57
323 324 6.594547 GGTAAAAGCCTCTTTTCCTACTAGTG 59.405 42.308 5.39 0.00 0.00 2.74
324 325 4.828072 AAGCCTCTTTTCCTACTAGTGG 57.172 45.455 5.39 1.52 0.00 4.00
325 326 3.108376 AGCCTCTTTTCCTACTAGTGGG 58.892 50.000 18.89 18.89 0.00 4.61
326 327 3.105283 GCCTCTTTTCCTACTAGTGGGA 58.895 50.000 23.11 23.11 38.54 4.37
327 328 3.518303 GCCTCTTTTCCTACTAGTGGGAA 59.482 47.826 30.80 30.80 46.51 3.97
335 336 6.713731 TTCCTACTAGTGGGAAGGAATTTT 57.286 37.500 30.80 0.00 43.91 1.82
336 337 6.309389 TCCTACTAGTGGGAAGGAATTTTC 57.691 41.667 24.50 0.00 37.29 2.29
337 338 6.030082 TCCTACTAGTGGGAAGGAATTTTCT 58.970 40.000 24.50 0.00 37.29 2.52
338 339 6.504279 TCCTACTAGTGGGAAGGAATTTTCTT 59.496 38.462 24.50 0.00 37.29 2.52
339 340 7.018249 TCCTACTAGTGGGAAGGAATTTTCTTT 59.982 37.037 24.50 0.00 37.29 2.52
340 341 7.670140 CCTACTAGTGGGAAGGAATTTTCTTTT 59.330 37.037 20.19 0.00 32.26 2.27
341 342 7.914427 ACTAGTGGGAAGGAATTTTCTTTTT 57.086 32.000 0.00 0.00 0.00 1.94
370 371 6.136541 CTTTATGAAGGGATTACAGTTGCC 57.863 41.667 0.00 0.00 0.00 4.52
371 372 2.107950 TGAAGGGATTACAGTTGCCG 57.892 50.000 0.00 0.00 0.00 5.69
372 373 1.339631 TGAAGGGATTACAGTTGCCGG 60.340 52.381 0.00 0.00 0.00 6.13
373 374 0.034477 AAGGGATTACAGTTGCCGGG 60.034 55.000 2.18 0.00 0.00 5.73
374 375 2.119029 GGGATTACAGTTGCCGGGC 61.119 63.158 13.32 13.32 0.00 6.13
375 376 2.119029 GGATTACAGTTGCCGGGCC 61.119 63.158 17.97 1.16 0.00 5.80
376 377 2.437716 ATTACAGTTGCCGGGCCG 60.438 61.111 21.46 21.46 0.00 6.13
377 378 3.262448 ATTACAGTTGCCGGGCCGT 62.262 57.895 26.32 10.85 0.00 5.68
378 379 2.757980 ATTACAGTTGCCGGGCCGTT 62.758 55.000 26.32 1.51 0.00 4.44
389 390 4.324991 GGCCGTTGGACCCGAAGT 62.325 66.667 0.00 0.00 0.00 3.01
390 391 2.741211 GCCGTTGGACCCGAAGTC 60.741 66.667 0.00 0.00 45.51 3.01
391 392 3.057337 CCGTTGGACCCGAAGTCT 58.943 61.111 5.67 0.00 45.54 3.24
392 393 1.880819 GCCGTTGGACCCGAAGTCTA 61.881 60.000 5.67 0.00 45.54 2.59
393 394 0.604578 CCGTTGGACCCGAAGTCTAA 59.395 55.000 5.67 3.44 45.54 2.10
396 397 2.825861 TTGGACCCGAAGTCTAACAC 57.174 50.000 5.67 0.00 45.54 3.32
397 398 0.599558 TGGACCCGAAGTCTAACACG 59.400 55.000 5.67 0.00 45.54 4.49
398 399 0.108945 GGACCCGAAGTCTAACACGG 60.109 60.000 0.00 0.00 45.54 4.94
399 400 0.735287 GACCCGAAGTCTAACACGGC 60.735 60.000 0.00 0.00 42.69 5.68
400 401 1.290955 CCCGAAGTCTAACACGGCA 59.709 57.895 0.00 0.00 43.37 5.69
401 402 0.320073 CCCGAAGTCTAACACGGCAA 60.320 55.000 0.00 0.00 43.37 4.52
402 403 0.788391 CCGAAGTCTAACACGGCAAC 59.212 55.000 0.00 0.00 38.98 4.17
403 404 1.493772 CGAAGTCTAACACGGCAACA 58.506 50.000 0.00 0.00 0.00 3.33
404 405 1.191647 CGAAGTCTAACACGGCAACAC 59.808 52.381 0.00 0.00 0.00 3.32
405 406 1.529865 GAAGTCTAACACGGCAACACC 59.470 52.381 0.00 0.00 0.00 4.16
421 422 4.787286 CCGCATGGCCCGGTTACA 62.787 66.667 10.49 0.00 40.84 2.41
422 423 3.505184 CGCATGGCCCGGTTACAC 61.505 66.667 0.00 0.00 0.00 2.90
423 424 3.138128 GCATGGCCCGGTTACACC 61.138 66.667 0.00 0.00 34.05 4.16
424 425 2.439519 CATGGCCCGGTTACACCC 60.440 66.667 0.00 0.00 33.75 4.61
425 426 2.936584 ATGGCCCGGTTACACCCA 60.937 61.111 0.00 0.00 33.75 4.51
426 427 3.276642 ATGGCCCGGTTACACCCAC 62.277 63.158 0.00 0.00 33.75 4.61
427 428 4.728110 GGCCCGGTTACACCCACC 62.728 72.222 0.00 0.00 33.75 4.61
428 429 3.643554 GCCCGGTTACACCCACCT 61.644 66.667 0.00 0.00 33.75 4.00
429 430 2.666812 CCCGGTTACACCCACCTC 59.333 66.667 0.00 0.00 33.75 3.85
430 431 2.263540 CCGGTTACACCCACCTCG 59.736 66.667 0.00 0.00 33.75 4.63
431 432 2.263540 CGGTTACACCCACCTCGG 59.736 66.667 0.00 0.00 33.75 4.63
432 433 2.576832 CGGTTACACCCACCTCGGT 61.577 63.158 0.00 0.00 33.75 4.69
433 434 1.756665 GGTTACACCCACCTCGGTT 59.243 57.895 0.00 0.00 32.17 4.44
434 435 0.604511 GGTTACACCCACCTCGGTTG 60.605 60.000 0.00 0.00 32.17 3.77
435 436 0.604511 GTTACACCCACCTCGGTTGG 60.605 60.000 4.75 4.75 37.01 3.77
436 437 0.763604 TTACACCCACCTCGGTTGGA 60.764 55.000 12.73 0.00 35.22 3.53
437 438 1.474332 TACACCCACCTCGGTTGGAC 61.474 60.000 12.73 0.00 35.22 4.02
438 439 3.246880 ACCCACCTCGGTTGGACC 61.247 66.667 12.73 0.00 35.22 4.46
439 440 2.928396 CCCACCTCGGTTGGACCT 60.928 66.667 0.00 0.00 35.66 3.85
440 441 2.526046 CCCACCTCGGTTGGACCTT 61.526 63.158 0.00 0.00 35.66 3.50
441 442 1.003718 CCACCTCGGTTGGACCTTC 60.004 63.158 0.00 0.00 35.66 3.46
442 443 1.003718 CACCTCGGTTGGACCTTCC 60.004 63.158 0.00 0.00 35.66 3.46
443 444 1.460689 ACCTCGGTTGGACCTTCCA 60.461 57.895 0.00 0.00 46.61 3.53
468 469 9.434420 CAATCCAATTGGCTACATTTCTAAAAA 57.566 29.630 20.33 0.00 36.63 1.94
489 490 5.813080 AAAATAATCCAGTCGGCTACAAC 57.187 39.130 0.00 0.00 0.00 3.32
521 525 3.150848 GGCAATTGGCTACAAAGTAGC 57.849 47.619 23.74 18.28 44.01 3.58
542 552 9.438228 AGTAGCCAGATAAGTAAAAGAAAAGTC 57.562 33.333 0.00 0.00 0.00 3.01
551 561 9.874215 ATAAGTAAAAGAAAAGTCAAACGCTAC 57.126 29.630 0.00 0.00 0.00 3.58
552 562 7.549615 AGTAAAAGAAAAGTCAAACGCTACT 57.450 32.000 0.00 0.00 0.00 2.57
555 565 9.366513 GTAAAAGAAAAGTCAAACGCTACTAAG 57.633 33.333 0.00 0.00 0.00 2.18
556 566 7.781548 AAAGAAAAGTCAAACGCTACTAAGA 57.218 32.000 0.00 0.00 0.00 2.10
557 567 7.409465 AAGAAAAGTCAAACGCTACTAAGAG 57.591 36.000 0.00 0.00 0.00 2.85
614 624 2.414138 CGGTTTAACAAGTCCGGATCAC 59.586 50.000 7.81 0.00 39.41 3.06
643 653 4.781883 GCGCAGAAACAAACAAACAAATCC 60.782 41.667 0.30 0.00 0.00 3.01
824 841 1.125711 GTCATACCGGCCCCCATACT 61.126 60.000 0.00 0.00 0.00 2.12
825 842 1.125093 TCATACCGGCCCCCATACTG 61.125 60.000 0.00 0.00 0.00 2.74
826 843 1.074014 ATACCGGCCCCCATACTGT 60.074 57.895 0.00 0.00 0.00 3.55
952 969 3.271490 ACCACCTCCCCTATATATAGCGT 59.729 47.826 13.49 2.61 0.00 5.07
1639 1728 2.807967 CCTCGCACAGTTCTTCAATTGA 59.192 45.455 3.38 3.38 0.00 2.57
1710 1805 1.036707 ATGCTAGACTCTCGCCTTCC 58.963 55.000 0.00 0.00 0.00 3.46
2011 2165 1.878211 AATGGGCAATTTGGGGTAGG 58.122 50.000 0.00 0.00 0.00 3.18
2023 2178 0.535797 GGGGTAGGACAGTAGCACAC 59.464 60.000 0.00 0.00 0.00 3.82
2170 2366 0.736053 CTGTAGCTCTCCGTGTCTCC 59.264 60.000 0.00 0.00 0.00 3.71
2171 2367 0.037734 TGTAGCTCTCCGTGTCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
2199 2395 1.063764 CGCGAGAACTGGACCTACTAC 59.936 57.143 0.00 0.00 0.00 2.73
2200 2396 2.367486 GCGAGAACTGGACCTACTACT 58.633 52.381 0.00 0.00 0.00 2.57
2212 2408 7.184936 ACTGGACCTACTACTAGGATATATGCT 59.815 40.741 11.80 11.80 42.34 3.79
2271 2467 2.481568 CACAACTGATGCACGTTGAGAT 59.518 45.455 23.90 6.71 42.24 2.75
2349 2546 3.874392 AACTTGTTCAGTTGCTTGCTT 57.126 38.095 0.00 0.00 44.70 3.91
2350 2547 3.155093 ACTTGTTCAGTTGCTTGCTTG 57.845 42.857 0.00 0.00 27.32 4.01
2351 2548 1.856597 CTTGTTCAGTTGCTTGCTTGC 59.143 47.619 0.00 0.00 0.00 4.01
2352 2549 1.105457 TGTTCAGTTGCTTGCTTGCT 58.895 45.000 3.47 0.00 0.00 3.91
2353 2550 1.477700 TGTTCAGTTGCTTGCTTGCTT 59.522 42.857 3.47 0.00 0.00 3.91
2354 2551 1.856597 GTTCAGTTGCTTGCTTGCTTG 59.143 47.619 3.47 0.84 0.00 4.01
2355 2552 0.249155 TCAGTTGCTTGCTTGCTTGC 60.249 50.000 3.47 0.00 0.00 4.01
2356 2553 0.249322 CAGTTGCTTGCTTGCTTGCT 60.249 50.000 10.35 0.00 0.00 3.91
2378 2575 1.006832 ACCTGCATGCGTTTACGATC 58.993 50.000 14.09 0.00 43.02 3.69
2440 2645 1.734477 CTGTTGGACTGACGGCTCG 60.734 63.158 0.00 0.00 0.00 5.03
2441 2646 3.112709 GTTGGACTGACGGCTCGC 61.113 66.667 0.00 0.00 0.00 5.03
2442 2647 3.303135 TTGGACTGACGGCTCGCT 61.303 61.111 0.00 0.00 0.00 4.93
2443 2648 3.282745 TTGGACTGACGGCTCGCTC 62.283 63.158 0.00 0.00 0.00 5.03
2861 3070 2.787915 GCTAGCAGCGCCTTTGAC 59.212 61.111 10.63 0.00 0.00 3.18
2902 3122 6.370994 TGTTAACTTCTCCGTGTTGTTGTTAA 59.629 34.615 7.22 0.00 0.00 2.01
2906 3126 3.811083 TCTCCGTGTTGTTGTTAATGGT 58.189 40.909 0.00 0.00 0.00 3.55
2907 3127 4.200874 TCTCCGTGTTGTTGTTAATGGTT 58.799 39.130 0.00 0.00 0.00 3.67
2908 3128 4.273969 TCTCCGTGTTGTTGTTAATGGTTC 59.726 41.667 0.00 0.00 0.00 3.62
2909 3129 3.002451 TCCGTGTTGTTGTTAATGGTTCG 59.998 43.478 0.00 0.00 0.00 3.95
2910 3130 2.717011 CGTGTTGTTGTTAATGGTTCGC 59.283 45.455 0.00 0.00 0.00 4.70
2911 3131 3.547214 CGTGTTGTTGTTAATGGTTCGCT 60.547 43.478 0.00 0.00 0.00 4.93
2912 3132 4.318903 CGTGTTGTTGTTAATGGTTCGCTA 60.319 41.667 0.00 0.00 0.00 4.26
2913 3133 4.907582 GTGTTGTTGTTAATGGTTCGCTAC 59.092 41.667 0.00 0.00 0.00 3.58
3073 3297 6.791867 TGCATTCCAGTAGTACAGTATTCT 57.208 37.500 2.52 0.00 0.00 2.40
3097 3321 0.182061 GAGAAGGCATCATGGGCTCA 59.818 55.000 9.60 0.00 43.71 4.26
3201 3425 9.808808 GTTTCTATTTTTACCGAGAAGAAAGAC 57.191 33.333 0.00 0.00 33.51 3.01
3210 3434 0.387929 AGAAGAAAGACGCCGACACA 59.612 50.000 0.00 0.00 0.00 3.72
3226 3579 4.212425 CCGACACAAAATGCTACTTGTACA 59.788 41.667 0.00 0.00 34.04 2.90
3259 3630 0.721718 GATCTCAACGAAGCAACCGG 59.278 55.000 0.00 0.00 0.00 5.28
3272 3643 0.958876 CAACCGGGCCCTGTTTCTAC 60.959 60.000 27.42 0.00 0.00 2.59
3296 3839 1.446907 AGCATCCAACTCGCAGAAAG 58.553 50.000 0.00 0.00 34.09 2.62
3297 3840 0.449388 GCATCCAACTCGCAGAAAGG 59.551 55.000 0.00 0.00 34.09 3.11
3298 3841 1.813513 CATCCAACTCGCAGAAAGGT 58.186 50.000 0.00 0.00 34.09 3.50
3301 3844 2.218603 TCCAACTCGCAGAAAGGTTTC 58.781 47.619 0.00 0.00 34.09 2.78
3302 3845 1.946768 CCAACTCGCAGAAAGGTTTCA 59.053 47.619 5.30 0.00 39.61 2.69
3303 3846 2.554032 CCAACTCGCAGAAAGGTTTCAT 59.446 45.455 5.30 0.00 39.61 2.57
3304 3847 3.004734 CCAACTCGCAGAAAGGTTTCATT 59.995 43.478 5.30 0.00 39.61 2.57
3305 3848 4.215399 CCAACTCGCAGAAAGGTTTCATTA 59.785 41.667 5.30 0.00 39.61 1.90
3381 3933 7.824289 CCAAGGAGTACATGTTCTGAAATAAGA 59.176 37.037 9.99 0.00 0.00 2.10
3414 3981 4.035278 TGCACCCAACTCGTTTAAAAAG 57.965 40.909 0.00 0.00 0.00 2.27
3417 3984 4.501559 GCACCCAACTCGTTTAAAAAGAAC 59.498 41.667 5.99 0.00 0.00 3.01
3486 4053 1.363744 GGACTTCACGCAAGATGAGG 58.636 55.000 1.83 0.00 43.62 3.86
3493 4060 4.233635 GCAAGATGAGGCGCTGCG 62.234 66.667 19.17 19.17 0.00 5.18
3596 4167 2.957402 ACCAAAATCAGCTGGAGACA 57.043 45.000 15.13 0.00 36.49 3.41
3620 4191 5.010282 TCTGGAAAGAAAATAAGCTGGACC 58.990 41.667 0.00 0.00 0.00 4.46
3766 4340 1.247567 CGTCCAAGGCCACAGAAATT 58.752 50.000 5.01 0.00 0.00 1.82
3776 4350 3.429410 GGCCACAGAAATTAAGATGGTGC 60.429 47.826 0.00 0.00 0.00 5.01
3827 4423 2.278142 GCATTTAGCCAAGCGCGG 60.278 61.111 8.83 0.00 44.76 6.46
3843 4439 2.556287 GGCCTTGCTGTTCGAACG 59.444 61.111 22.48 17.48 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.878737 AGGTTGTTATTAGGTAGCTATTAGAGA 57.121 33.333 1.80 0.00 0.00 3.10
16 17 9.919416 GGGGTTAATTTAGGTTGTTATTAGGTA 57.081 33.333 0.00 0.00 0.00 3.08
17 18 7.840716 GGGGGTTAATTTAGGTTGTTATTAGGT 59.159 37.037 0.00 0.00 0.00 3.08
18 19 8.241497 GGGGGTTAATTTAGGTTGTTATTAGG 57.759 38.462 0.00 0.00 0.00 2.69
40 41 2.150719 GGTTTGGGGGTTTTGGGGG 61.151 63.158 0.00 0.00 0.00 5.40
41 42 2.150719 GGGTTTGGGGGTTTTGGGG 61.151 63.158 0.00 0.00 0.00 4.96
42 43 2.150719 GGGGTTTGGGGGTTTTGGG 61.151 63.158 0.00 0.00 0.00 4.12
43 44 2.150719 GGGGGTTTGGGGGTTTTGG 61.151 63.158 0.00 0.00 0.00 3.28
44 45 3.569849 GGGGGTTTGGGGGTTTTG 58.430 61.111 0.00 0.00 0.00 2.44
69 70 4.758688 CAGGAGCTGAGGTTTTTGTTTTT 58.241 39.130 0.00 0.00 32.44 1.94
70 71 3.430790 GCAGGAGCTGAGGTTTTTGTTTT 60.431 43.478 0.00 0.00 37.91 2.43
71 72 2.101415 GCAGGAGCTGAGGTTTTTGTTT 59.899 45.455 0.00 0.00 37.91 2.83
72 73 1.683385 GCAGGAGCTGAGGTTTTTGTT 59.317 47.619 0.00 0.00 37.91 2.83
73 74 1.322442 GCAGGAGCTGAGGTTTTTGT 58.678 50.000 0.00 0.00 37.91 2.83
74 75 0.600057 GGCAGGAGCTGAGGTTTTTG 59.400 55.000 0.00 0.00 41.70 2.44
75 76 0.185901 TGGCAGGAGCTGAGGTTTTT 59.814 50.000 0.00 0.00 41.70 1.94
76 77 0.251077 CTGGCAGGAGCTGAGGTTTT 60.251 55.000 6.61 0.00 41.70 2.43
77 78 1.377994 CTGGCAGGAGCTGAGGTTT 59.622 57.895 6.61 0.00 41.70 3.27
78 79 2.600729 CCTGGCAGGAGCTGAGGTT 61.601 63.158 29.96 0.00 37.67 3.50
79 80 3.007920 CCTGGCAGGAGCTGAGGT 61.008 66.667 29.96 0.00 37.67 3.85
80 81 3.007920 ACCTGGCAGGAGCTGAGG 61.008 66.667 38.99 12.26 42.55 3.86
81 82 2.268280 CACCTGGCAGGAGCTGAG 59.732 66.667 38.99 16.64 37.67 3.35
82 83 4.025858 GCACCTGGCAGGAGCTGA 62.026 66.667 38.17 0.00 46.56 4.26
93 94 3.939837 ATCCACGCGTCAGCACCTG 62.940 63.158 9.86 0.00 45.49 4.00
94 95 3.695606 ATCCACGCGTCAGCACCT 61.696 61.111 9.86 0.00 45.49 4.00
95 96 3.490759 CATCCACGCGTCAGCACC 61.491 66.667 9.86 0.00 45.49 5.01
96 97 4.152625 GCATCCACGCGTCAGCAC 62.153 66.667 9.86 0.00 45.49 4.40
98 99 2.978452 ATAGGCATCCACGCGTCAGC 62.978 60.000 9.86 11.14 40.74 4.26
99 100 0.530650 AATAGGCATCCACGCGTCAG 60.531 55.000 9.86 3.57 0.00 3.51
100 101 0.809636 CAATAGGCATCCACGCGTCA 60.810 55.000 9.86 0.00 0.00 4.35
101 102 1.498865 CCAATAGGCATCCACGCGTC 61.499 60.000 9.86 0.00 0.00 5.19
102 103 1.523711 CCAATAGGCATCCACGCGT 60.524 57.895 5.58 5.58 0.00 6.01
103 104 1.498865 GACCAATAGGCATCCACGCG 61.499 60.000 3.53 3.53 39.06 6.01
104 105 1.166531 GGACCAATAGGCATCCACGC 61.167 60.000 0.00 0.00 39.06 5.34
105 106 0.535102 GGGACCAATAGGCATCCACG 60.535 60.000 0.00 0.00 39.06 4.94
106 107 0.535102 CGGGACCAATAGGCATCCAC 60.535 60.000 0.00 0.00 39.06 4.02
107 108 1.705002 CCGGGACCAATAGGCATCCA 61.705 60.000 0.00 0.00 39.06 3.41
108 109 1.073199 CCGGGACCAATAGGCATCC 59.927 63.158 0.00 0.00 39.06 3.51
109 110 0.182775 AACCGGGACCAATAGGCATC 59.817 55.000 6.32 0.00 39.06 3.91
110 111 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
111 112 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
112 113 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
113 114 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
114 115 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
115 116 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
116 117 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
117 118 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
122 123 4.939368 TTCGTGCCACCAACCGGG 62.939 66.667 6.32 0.00 44.81 5.73
123 124 3.656045 GTTCGTGCCACCAACCGG 61.656 66.667 0.00 0.00 38.77 5.28
124 125 3.656045 GGTTCGTGCCACCAACCG 61.656 66.667 8.63 0.00 34.04 4.44
125 126 3.656045 CGGTTCGTGCCACCAACC 61.656 66.667 13.66 13.66 36.91 3.77
126 127 3.656045 CCGGTTCGTGCCACCAAC 61.656 66.667 0.00 0.00 33.36 3.77
127 128 4.939368 CCCGGTTCGTGCCACCAA 62.939 66.667 0.00 0.00 33.36 3.67
132 133 4.629523 TTGGTCCCGGTTCGTGCC 62.630 66.667 0.00 0.00 0.00 5.01
133 134 2.592287 TTTGGTCCCGGTTCGTGC 60.592 61.111 0.00 0.00 0.00 5.34
134 135 1.964373 CCTTTGGTCCCGGTTCGTG 60.964 63.158 0.00 0.00 0.00 4.35
135 136 2.428622 CCTTTGGTCCCGGTTCGT 59.571 61.111 0.00 0.00 0.00 3.85
136 137 3.053896 GCCTTTGGTCCCGGTTCG 61.054 66.667 0.00 0.00 0.00 3.95
137 138 2.675423 GGCCTTTGGTCCCGGTTC 60.675 66.667 0.00 0.00 0.00 3.62
138 139 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
144 145 2.361737 GCAGGAGGGCCTTTGGTC 60.362 66.667 7.89 0.00 43.90 4.02
180 181 1.740296 CTAAAGGCCGTCCACGTGG 60.740 63.158 29.26 29.26 37.74 4.94
181 182 1.005394 ACTAAAGGCCGTCCACGTG 60.005 57.895 9.08 9.08 37.74 4.49
182 183 1.291272 GACTAAAGGCCGTCCACGT 59.709 57.895 0.00 0.00 37.74 4.49
183 184 1.447314 GGACTAAAGGCCGTCCACG 60.447 63.158 19.41 1.11 46.98 4.94
184 185 4.611961 GGACTAAAGGCCGTCCAC 57.388 61.111 19.41 2.12 46.98 4.02
187 188 2.176314 AACCGGGACTAAAGGCCGTC 62.176 60.000 6.32 0.00 0.00 4.79
188 189 2.176314 GAACCGGGACTAAAGGCCGT 62.176 60.000 6.32 0.00 0.00 5.68
189 190 1.449070 GAACCGGGACTAAAGGCCG 60.449 63.158 6.32 0.00 0.00 6.13
190 191 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
191 192 1.017701 CACGAACCGGGACTAAAGGC 61.018 60.000 6.32 0.00 28.17 4.35
192 193 0.319405 ACACGAACCGGGACTAAAGG 59.681 55.000 6.32 0.00 32.98 3.11
193 194 3.057315 TCTTACACGAACCGGGACTAAAG 60.057 47.826 6.32 0.54 32.98 1.85
194 195 2.890311 TCTTACACGAACCGGGACTAAA 59.110 45.455 6.32 0.00 32.98 1.85
195 196 2.513753 TCTTACACGAACCGGGACTAA 58.486 47.619 6.32 0.00 32.98 2.24
196 197 2.198827 TCTTACACGAACCGGGACTA 57.801 50.000 6.32 0.00 32.98 2.59
197 198 1.000171 GTTCTTACACGAACCGGGACT 60.000 52.381 6.32 0.00 37.82 3.85
198 199 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
199 200 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
204 205 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
205 206 1.331214 AGTCCCGGTTCTTACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
206 207 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
207 208 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
208 209 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
209 210 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
210 211 2.679059 GCCCTTTAGTCCCGGTTCTTAC 60.679 54.545 0.00 0.00 0.00 2.34
211 212 1.556451 GCCCTTTAGTCCCGGTTCTTA 59.444 52.381 0.00 0.00 0.00 2.10
212 213 0.327259 GCCCTTTAGTCCCGGTTCTT 59.673 55.000 0.00 0.00 0.00 2.52
213 214 0.546988 AGCCCTTTAGTCCCGGTTCT 60.547 55.000 0.00 0.15 0.00 3.01
214 215 1.138464 CTAGCCCTTTAGTCCCGGTTC 59.862 57.143 0.00 0.00 0.00 3.62
215 216 1.201424 CTAGCCCTTTAGTCCCGGTT 58.799 55.000 0.00 0.00 0.00 4.44
216 217 0.690077 CCTAGCCCTTTAGTCCCGGT 60.690 60.000 0.00 0.00 0.00 5.28
217 218 1.408453 CCCTAGCCCTTTAGTCCCGG 61.408 65.000 0.00 0.00 0.00 5.73
218 219 2.041206 GCCCTAGCCCTTTAGTCCCG 62.041 65.000 0.00 0.00 0.00 5.14
219 220 0.986550 TGCCCTAGCCCTTTAGTCCC 60.987 60.000 0.00 0.00 38.69 4.46
220 221 1.141185 ATGCCCTAGCCCTTTAGTCC 58.859 55.000 0.00 0.00 38.69 3.85
221 222 3.391626 ACTAATGCCCTAGCCCTTTAGTC 59.608 47.826 10.64 0.00 35.19 2.59
222 223 3.394645 ACTAATGCCCTAGCCCTTTAGT 58.605 45.455 10.64 10.64 38.69 2.24
223 224 5.306394 GTTACTAATGCCCTAGCCCTTTAG 58.694 45.833 9.81 9.81 38.69 1.85
224 225 4.202284 CGTTACTAATGCCCTAGCCCTTTA 60.202 45.833 0.00 0.00 38.69 1.85
225 226 3.433173 CGTTACTAATGCCCTAGCCCTTT 60.433 47.826 0.00 0.00 38.69 3.11
226 227 2.104281 CGTTACTAATGCCCTAGCCCTT 59.896 50.000 0.00 0.00 38.69 3.95
227 228 1.692519 CGTTACTAATGCCCTAGCCCT 59.307 52.381 0.00 0.00 38.69 5.19
228 229 1.690352 TCGTTACTAATGCCCTAGCCC 59.310 52.381 0.00 0.00 38.69 5.19
229 230 2.547430 GGTCGTTACTAATGCCCTAGCC 60.547 54.545 0.00 0.00 38.69 3.93
230 231 2.547430 GGGTCGTTACTAATGCCCTAGC 60.547 54.545 10.85 0.00 40.48 3.42
231 232 2.963782 AGGGTCGTTACTAATGCCCTAG 59.036 50.000 15.90 0.00 40.21 3.02
232 233 3.036452 AGGGTCGTTACTAATGCCCTA 57.964 47.619 15.90 0.00 40.21 3.53
233 234 1.875488 AGGGTCGTTACTAATGCCCT 58.125 50.000 13.37 13.37 38.46 5.19
234 235 2.704464 AAGGGTCGTTACTAATGCCC 57.296 50.000 10.40 10.40 35.35 5.36
235 236 4.763073 ACTAAAGGGTCGTTACTAATGCC 58.237 43.478 0.00 0.00 0.00 4.40
236 237 4.807834 GGACTAAAGGGTCGTTACTAATGC 59.192 45.833 0.00 0.00 37.12 3.56
237 238 5.354767 GGGACTAAAGGGTCGTTACTAATG 58.645 45.833 0.00 0.00 37.12 1.90
238 239 4.098501 CGGGACTAAAGGGTCGTTACTAAT 59.901 45.833 0.00 0.00 37.12 1.73
239 240 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
240 241 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
241 242 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
242 243 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
243 244 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
244 245 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
245 246 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
246 247 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
247 248 0.251354 GGAACCGGGACTAAAGGGTC 59.749 60.000 6.32 0.00 40.88 4.46
248 249 0.178882 AGGAACCGGGACTAAAGGGT 60.179 55.000 6.32 0.00 0.00 4.34
249 250 0.252197 CAGGAACCGGGACTAAAGGG 59.748 60.000 6.32 0.00 0.00 3.95
250 251 1.272807 TCAGGAACCGGGACTAAAGG 58.727 55.000 6.32 0.00 0.00 3.11
251 252 2.696506 GTTCAGGAACCGGGACTAAAG 58.303 52.381 6.32 0.00 35.36 1.85
252 253 2.845363 GTTCAGGAACCGGGACTAAA 57.155 50.000 6.32 0.00 35.36 1.85
262 263 2.614734 CCTTTAGTCCCGGTTCAGGAAC 60.615 54.545 0.00 3.58 40.45 3.62
263 264 1.626825 CCTTTAGTCCCGGTTCAGGAA 59.373 52.381 0.00 0.00 34.43 3.36
264 265 1.272807 CCTTTAGTCCCGGTTCAGGA 58.727 55.000 0.00 0.00 0.00 3.86
265 266 0.392595 GCCTTTAGTCCCGGTTCAGG 60.393 60.000 0.00 0.00 0.00 3.86
266 267 0.392595 GGCCTTTAGTCCCGGTTCAG 60.393 60.000 0.00 0.00 0.00 3.02
267 268 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
268 269 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
269 270 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
273 274 3.552875 GTTCATAAGGGCCTTTAGTCCC 58.447 50.000 26.29 4.98 42.94 4.46
274 275 3.552875 GGTTCATAAGGGCCTTTAGTCC 58.447 50.000 26.29 16.19 0.00 3.85
275 276 3.203716 CGGTTCATAAGGGCCTTTAGTC 58.796 50.000 26.29 11.28 0.00 2.59
276 277 2.092592 CCGGTTCATAAGGGCCTTTAGT 60.093 50.000 26.29 8.42 0.00 2.24
277 278 2.572290 CCGGTTCATAAGGGCCTTTAG 58.428 52.381 26.29 17.10 0.00 1.85
278 279 1.213430 CCCGGTTCATAAGGGCCTTTA 59.787 52.381 26.29 10.10 38.51 1.85
279 280 0.033503 CCCGGTTCATAAGGGCCTTT 60.034 55.000 26.29 5.08 38.51 3.11
280 281 1.613061 CCCGGTTCATAAGGGCCTT 59.387 57.895 24.44 24.44 38.51 4.35
281 282 2.383601 CCCCGGTTCATAAGGGCCT 61.384 63.158 0.00 0.00 43.74 5.19
282 283 1.347243 TACCCCGGTTCATAAGGGCC 61.347 60.000 0.00 0.00 43.96 5.80
283 284 0.547553 TTACCCCGGTTCATAAGGGC 59.452 55.000 0.00 0.00 43.96 5.19
284 285 3.284617 CTTTTACCCCGGTTCATAAGGG 58.715 50.000 0.00 0.00 45.75 3.95
285 286 2.686405 GCTTTTACCCCGGTTCATAAGG 59.314 50.000 0.00 0.00 0.00 2.69
286 287 2.686405 GGCTTTTACCCCGGTTCATAAG 59.314 50.000 0.00 0.00 0.00 1.73
287 288 2.309458 AGGCTTTTACCCCGGTTCATAA 59.691 45.455 0.00 0.00 0.00 1.90
288 289 1.917568 AGGCTTTTACCCCGGTTCATA 59.082 47.619 0.00 0.00 0.00 2.15
289 290 0.702316 AGGCTTTTACCCCGGTTCAT 59.298 50.000 0.00 0.00 0.00 2.57
290 291 0.037160 GAGGCTTTTACCCCGGTTCA 59.963 55.000 0.00 0.00 0.00 3.18
291 292 0.327259 AGAGGCTTTTACCCCGGTTC 59.673 55.000 0.00 0.00 0.00 3.62
292 293 0.775542 AAGAGGCTTTTACCCCGGTT 59.224 50.000 0.00 0.00 0.00 4.44
293 294 0.775542 AAAGAGGCTTTTACCCCGGT 59.224 50.000 0.00 0.00 0.00 5.28
294 295 1.816835 GAAAAGAGGCTTTTACCCCGG 59.183 52.381 5.25 0.00 0.00 5.73
295 296 1.816835 GGAAAAGAGGCTTTTACCCCG 59.183 52.381 5.25 0.00 0.00 5.73
296 297 3.170991 AGGAAAAGAGGCTTTTACCCC 57.829 47.619 10.42 6.14 0.00 4.95
297 298 4.919793 AGTAGGAAAAGAGGCTTTTACCC 58.080 43.478 10.42 6.72 0.00 3.69
298 299 6.594547 CACTAGTAGGAAAAGAGGCTTTTACC 59.405 42.308 10.42 10.45 0.00 2.85
299 300 6.594547 CCACTAGTAGGAAAAGAGGCTTTTAC 59.405 42.308 6.74 6.74 0.00 2.01
300 301 6.296259 CCCACTAGTAGGAAAAGAGGCTTTTA 60.296 42.308 0.22 0.00 0.00 1.52
301 302 5.515008 CCCACTAGTAGGAAAAGAGGCTTTT 60.515 44.000 0.22 4.95 0.00 2.27
302 303 4.019231 CCCACTAGTAGGAAAAGAGGCTTT 60.019 45.833 0.22 0.00 0.00 3.51
303 304 3.519913 CCCACTAGTAGGAAAAGAGGCTT 59.480 47.826 0.22 0.00 0.00 4.35
304 305 3.108376 CCCACTAGTAGGAAAAGAGGCT 58.892 50.000 0.22 0.00 0.00 4.58
305 306 3.105283 TCCCACTAGTAGGAAAAGAGGC 58.895 50.000 7.67 0.00 0.00 4.70
306 307 4.162509 CCTTCCCACTAGTAGGAAAAGAGG 59.837 50.000 21.12 15.55 41.54 3.69
307 308 5.024118 TCCTTCCCACTAGTAGGAAAAGAG 58.976 45.833 21.12 11.04 41.54 2.85
308 309 5.019657 TCCTTCCCACTAGTAGGAAAAGA 57.980 43.478 21.12 17.54 41.54 2.52
309 310 5.757099 TTCCTTCCCACTAGTAGGAAAAG 57.243 43.478 21.12 15.85 42.26 2.27
310 311 6.713731 AATTCCTTCCCACTAGTAGGAAAA 57.286 37.500 22.72 15.99 46.59 2.29
311 312 6.713731 AAATTCCTTCCCACTAGTAGGAAA 57.286 37.500 22.72 11.03 46.59 3.13
313 314 6.030082 AGAAAATTCCTTCCCACTAGTAGGA 58.970 40.000 5.87 5.87 35.06 2.94
314 315 6.314899 AGAAAATTCCTTCCCACTAGTAGG 57.685 41.667 0.09 0.09 0.00 3.18
315 316 8.637196 AAAAGAAAATTCCTTCCCACTAGTAG 57.363 34.615 0.00 0.00 0.00 2.57
317 318 7.914427 AAAAAGAAAATTCCTTCCCACTAGT 57.086 32.000 0.00 0.00 0.00 2.57
347 348 5.220854 CGGCAACTGTAATCCCTTCATAAAG 60.221 44.000 0.00 0.00 0.00 1.85
348 349 4.638421 CGGCAACTGTAATCCCTTCATAAA 59.362 41.667 0.00 0.00 0.00 1.40
349 350 4.196193 CGGCAACTGTAATCCCTTCATAA 58.804 43.478 0.00 0.00 0.00 1.90
350 351 3.433031 CCGGCAACTGTAATCCCTTCATA 60.433 47.826 0.00 0.00 0.00 2.15
351 352 2.643551 CGGCAACTGTAATCCCTTCAT 58.356 47.619 0.00 0.00 0.00 2.57
352 353 1.339631 CCGGCAACTGTAATCCCTTCA 60.340 52.381 0.00 0.00 0.00 3.02
353 354 1.379527 CCGGCAACTGTAATCCCTTC 58.620 55.000 0.00 0.00 0.00 3.46
354 355 0.034477 CCCGGCAACTGTAATCCCTT 60.034 55.000 0.00 0.00 0.00 3.95
355 356 1.607612 CCCGGCAACTGTAATCCCT 59.392 57.895 0.00 0.00 0.00 4.20
356 357 2.119029 GCCCGGCAACTGTAATCCC 61.119 63.158 3.91 0.00 0.00 3.85
357 358 2.119029 GGCCCGGCAACTGTAATCC 61.119 63.158 12.58 0.00 0.00 3.01
358 359 2.469516 CGGCCCGGCAACTGTAATC 61.470 63.158 12.58 0.00 0.00 1.75
359 360 2.437716 CGGCCCGGCAACTGTAAT 60.438 61.111 12.58 0.00 0.00 1.89
360 361 3.479127 AACGGCCCGGCAACTGTAA 62.479 57.895 12.58 0.00 0.00 2.41
361 362 3.943691 AACGGCCCGGCAACTGTA 61.944 61.111 12.58 0.00 0.00 2.74
372 373 4.324991 ACTTCGGGTCCAACGGCC 62.325 66.667 0.00 0.00 0.00 6.13
373 374 1.880819 TAGACTTCGGGTCCAACGGC 61.881 60.000 5.97 0.00 45.54 5.68
374 375 0.604578 TTAGACTTCGGGTCCAACGG 59.395 55.000 5.97 0.00 45.54 4.44
375 376 1.000060 TGTTAGACTTCGGGTCCAACG 60.000 52.381 12.59 0.00 45.15 4.10
376 377 2.410939 GTGTTAGACTTCGGGTCCAAC 58.589 52.381 11.32 11.32 45.54 3.77
377 378 1.000060 CGTGTTAGACTTCGGGTCCAA 60.000 52.381 5.97 0.00 45.54 3.53
378 379 0.599558 CGTGTTAGACTTCGGGTCCA 59.400 55.000 5.97 0.00 45.54 4.02
379 380 0.108945 CCGTGTTAGACTTCGGGTCC 60.109 60.000 5.97 0.00 45.54 4.46
380 381 0.735287 GCCGTGTTAGACTTCGGGTC 60.735 60.000 13.50 2.08 44.80 4.46
381 382 1.291272 GCCGTGTTAGACTTCGGGT 59.709 57.895 13.50 0.00 42.71 5.28
382 383 0.320073 TTGCCGTGTTAGACTTCGGG 60.320 55.000 13.50 0.00 42.71 5.14
383 384 0.788391 GTTGCCGTGTTAGACTTCGG 59.212 55.000 0.00 0.00 44.86 4.30
384 385 1.191647 GTGTTGCCGTGTTAGACTTCG 59.808 52.381 0.00 0.00 0.00 3.79
385 386 1.529865 GGTGTTGCCGTGTTAGACTTC 59.470 52.381 0.00 0.00 0.00 3.01
386 387 1.589803 GGTGTTGCCGTGTTAGACTT 58.410 50.000 0.00 0.00 0.00 3.01
387 388 3.300711 GGTGTTGCCGTGTTAGACT 57.699 52.632 0.00 0.00 0.00 3.24
402 403 4.787286 TAACCGGGCCATGCGGTG 62.787 66.667 22.97 0.45 36.03 4.94
403 404 4.789123 GTAACCGGGCCATGCGGT 62.789 66.667 17.69 17.69 37.66 5.68
404 405 4.787286 TGTAACCGGGCCATGCGG 62.787 66.667 16.37 16.37 0.00 5.69
405 406 3.505184 GTGTAACCGGGCCATGCG 61.505 66.667 6.32 0.00 0.00 4.73
421 422 3.246880 GGTCCAACCGAGGTGGGT 61.247 66.667 14.99 0.00 44.64 4.51
422 423 2.465055 GAAGGTCCAACCGAGGTGGG 62.465 65.000 9.47 9.47 44.90 4.61
423 424 1.003718 GAAGGTCCAACCGAGGTGG 60.004 63.158 0.00 1.83 44.90 4.61
424 425 1.003718 GGAAGGTCCAACCGAGGTG 60.004 63.158 0.00 0.00 44.90 4.00
425 426 1.460689 TGGAAGGTCCAACCGAGGT 60.461 57.895 0.00 0.00 45.00 3.85
426 427 3.478780 TGGAAGGTCCAACCGAGG 58.521 61.111 0.00 0.00 45.00 4.63
442 443 9.434420 TTTTTAGAAATGTAGCCAATTGGATTG 57.566 29.630 29.02 1.49 39.94 2.67
466 467 5.124936 GGTTGTAGCCGACTGGATTATTTTT 59.875 40.000 0.00 0.00 37.49 1.94
467 468 4.638865 GGTTGTAGCCGACTGGATTATTTT 59.361 41.667 0.00 0.00 37.49 1.82
468 469 4.196971 GGTTGTAGCCGACTGGATTATTT 58.803 43.478 0.00 0.00 37.49 1.40
469 470 3.433173 GGGTTGTAGCCGACTGGATTATT 60.433 47.826 0.00 0.00 37.49 1.40
470 471 2.104281 GGGTTGTAGCCGACTGGATTAT 59.896 50.000 0.00 0.00 37.49 1.28
471 472 1.483415 GGGTTGTAGCCGACTGGATTA 59.517 52.381 0.00 0.00 37.49 1.75
472 473 0.252197 GGGTTGTAGCCGACTGGATT 59.748 55.000 0.00 0.00 37.49 3.01
473 474 0.617820 AGGGTTGTAGCCGACTGGAT 60.618 55.000 0.00 0.00 41.56 3.41
474 475 0.834687 AAGGGTTGTAGCCGACTGGA 60.835 55.000 0.00 0.00 41.56 3.86
500 504 2.755103 GCTACTTTGTAGCCAATTGCCT 59.245 45.455 16.29 0.00 42.71 4.75
517 521 9.216117 TGACTTTTCTTTTACTTATCTGGCTAC 57.784 33.333 0.00 0.00 0.00 3.58
519 523 8.691661 TTGACTTTTCTTTTACTTATCTGGCT 57.308 30.769 0.00 0.00 0.00 4.75
521 525 9.382244 CGTTTGACTTTTCTTTTACTTATCTGG 57.618 33.333 0.00 0.00 0.00 3.86
522 526 8.892905 GCGTTTGACTTTTCTTTTACTTATCTG 58.107 33.333 0.00 0.00 0.00 2.90
523 527 8.837389 AGCGTTTGACTTTTCTTTTACTTATCT 58.163 29.630 0.00 0.00 0.00 1.98
542 552 3.587797 TGACCCTCTTAGTAGCGTTTG 57.412 47.619 0.00 0.00 0.00 2.93
551 561 1.542915 TCGTCGGTTTGACCCTCTTAG 59.457 52.381 0.00 0.00 45.23 2.18
552 562 1.619654 TCGTCGGTTTGACCCTCTTA 58.380 50.000 0.00 0.00 45.23 2.10
555 565 0.033090 AGTTCGTCGGTTTGACCCTC 59.967 55.000 0.00 0.00 45.23 4.30
556 566 1.000171 GTAGTTCGTCGGTTTGACCCT 60.000 52.381 0.00 0.00 45.23 4.34
557 567 1.422388 GTAGTTCGTCGGTTTGACCC 58.578 55.000 0.00 0.00 45.23 4.46
614 624 1.001487 TGTTTGTTTCTGCGCTGATGG 60.001 47.619 18.14 0.00 0.00 3.51
643 653 5.630896 TCGTTTCTGTTTGTTTACTCGAG 57.369 39.130 11.84 11.84 0.00 4.04
804 817 1.125711 GTATGGGGGCCGGTATGACT 61.126 60.000 1.90 0.00 0.00 3.41
1650 1739 9.991906 ATAAAATTTGGGAGATTGCAGATATTG 57.008 29.630 0.00 0.00 0.00 1.90
1718 1813 1.889891 AAATTATGCGAAACGGCGTG 58.110 45.000 15.70 1.45 35.06 5.34
1995 2149 0.040499 TGTCCTACCCCAAATTGCCC 59.960 55.000 0.00 0.00 0.00 5.36
2011 2165 3.489180 ACTACATCGTGTGCTACTGTC 57.511 47.619 1.58 0.00 0.00 3.51
2023 2178 5.794687 TCAACAGGCATTAAACTACATCG 57.205 39.130 0.00 0.00 0.00 3.84
2170 2366 1.464687 CCAGTTCTCGCGATGCTTTTG 60.465 52.381 10.36 3.89 0.00 2.44
2171 2367 0.798776 CCAGTTCTCGCGATGCTTTT 59.201 50.000 10.36 0.00 0.00 2.27
2199 2395 3.862267 GCTCACGCAAGCATATATCCTAG 59.138 47.826 4.85 0.00 42.05 3.02
2200 2396 3.511540 AGCTCACGCAAGCATATATCCTA 59.488 43.478 11.69 0.00 45.00 2.94
2212 2408 1.374631 CTAGGTGCAGCTCACGCAA 60.375 57.895 23.94 2.20 46.56 4.85
2271 2467 4.512944 TGTTTGAAAGCAAAACAAAGTGCA 59.487 33.333 0.00 0.00 44.91 4.57
2369 2566 0.106149 ATCGGGGCAGGATCGTAAAC 59.894 55.000 0.00 0.00 0.00 2.01
2371 2568 2.046938 GATCGGGGCAGGATCGTAA 58.953 57.895 1.94 0.00 31.85 3.18
2378 2575 4.899239 GTGCTCGATCGGGGCAGG 62.899 72.222 27.37 9.70 36.62 4.85
2417 2614 0.108138 CCGTCAGTCCAACAGATCCC 60.108 60.000 0.00 0.00 0.00 3.85
2418 2615 0.741221 GCCGTCAGTCCAACAGATCC 60.741 60.000 0.00 0.00 0.00 3.36
2421 2618 1.666011 GAGCCGTCAGTCCAACAGA 59.334 57.895 0.00 0.00 0.00 3.41
2440 2645 3.728373 ACCACCAATCCCCGGAGC 61.728 66.667 0.73 0.00 0.00 4.70
2441 2646 2.272146 CACCACCAATCCCCGGAG 59.728 66.667 0.73 0.00 0.00 4.63
2442 2647 4.041762 GCACCACCAATCCCCGGA 62.042 66.667 0.73 0.00 0.00 5.14
2443 2648 4.358841 TGCACCACCAATCCCCGG 62.359 66.667 0.00 0.00 0.00 5.73
2856 3065 4.188462 CACTGCTACATTATCCGGTCAAA 58.812 43.478 0.00 0.00 0.00 2.69
2857 3066 3.196901 ACACTGCTACATTATCCGGTCAA 59.803 43.478 0.00 0.00 0.00 3.18
2858 3067 2.764010 ACACTGCTACATTATCCGGTCA 59.236 45.455 0.00 0.00 0.00 4.02
2859 3068 3.454371 ACACTGCTACATTATCCGGTC 57.546 47.619 0.00 0.00 0.00 4.79
2860 3069 3.906720 AACACTGCTACATTATCCGGT 57.093 42.857 0.00 0.00 0.00 5.28
2861 3070 5.357257 AGTTAACACTGCTACATTATCCGG 58.643 41.667 8.61 0.00 0.00 5.14
2911 3131 5.070981 TCGCCCTTCTACTACTAGCTAAGTA 59.929 44.000 5.41 5.41 39.80 2.24
2912 3132 4.136051 CGCCCTTCTACTACTAGCTAAGT 58.864 47.826 3.65 3.65 42.62 2.24
2913 3133 4.213906 GTCGCCCTTCTACTACTAGCTAAG 59.786 50.000 0.00 0.00 0.00 2.18
2931 3151 1.741770 ATTTGGACTCAGCGTCGCC 60.742 57.895 14.86 0.00 43.79 5.54
2932 3152 1.014044 TCATTTGGACTCAGCGTCGC 61.014 55.000 9.80 9.80 43.79 5.19
3073 3297 3.117398 AGCCCATGATGCCTTCTCAATAA 60.117 43.478 0.00 0.00 0.00 1.40
3097 3321 6.663093 TCAGGTGAACAGTTATTAATTGCCAT 59.337 34.615 0.00 0.00 0.00 4.40
3100 3324 9.503427 GTATTCAGGTGAACAGTTATTAATTGC 57.497 33.333 0.00 0.00 36.80 3.56
3201 3425 0.796312 AGTAGCATTTTGTGTCGGCG 59.204 50.000 0.00 0.00 0.00 6.46
3226 3579 6.997655 TCGTTGAGATCCTCATAGCAAATAT 58.002 36.000 0.00 0.00 40.39 1.28
3259 3630 2.290071 TGCTACTTGTAGAAACAGGGCC 60.290 50.000 11.54 0.00 37.03 5.80
3272 3643 1.662629 CTGCGAGTTGGATGCTACTTG 59.337 52.381 10.93 10.93 0.00 3.16
3296 3839 5.918011 TGATTGTTTCTTGCGTAATGAAACC 59.082 36.000 23.92 15.87 45.02 3.27
3297 3840 6.397480 CGTGATTGTTTCTTGCGTAATGAAAC 60.397 38.462 22.03 22.03 45.51 2.78
3298 3841 5.623264 CGTGATTGTTTCTTGCGTAATGAAA 59.377 36.000 6.72 6.72 0.00 2.69
3301 3844 4.707563 TCGTGATTGTTTCTTGCGTAATG 58.292 39.130 0.00 0.00 0.00 1.90
3302 3845 5.351233 TTCGTGATTGTTTCTTGCGTAAT 57.649 34.783 0.00 0.00 0.00 1.89
3303 3846 4.797693 TTCGTGATTGTTTCTTGCGTAA 57.202 36.364 0.00 0.00 0.00 3.18
3304 3847 5.351233 AATTCGTGATTGTTTCTTGCGTA 57.649 34.783 0.00 0.00 0.00 4.42
3305 3848 3.896648 ATTCGTGATTGTTTCTTGCGT 57.103 38.095 0.00 0.00 0.00 5.24
3317 3861 3.706594 TCTCCTCTGCCTTAATTCGTGAT 59.293 43.478 0.00 0.00 0.00 3.06
3319 3863 3.190874 GTCTCCTCTGCCTTAATTCGTG 58.809 50.000 0.00 0.00 0.00 4.35
3381 3933 3.140623 GTTGGGTGCAAGCATTTGATTT 58.859 40.909 0.00 0.00 36.36 2.17
3492 4059 3.289834 GTAGCCATGCCCCATGCG 61.290 66.667 0.00 0.00 45.60 4.73
3493 4060 1.741327 CTTGTAGCCATGCCCCATGC 61.741 60.000 0.00 0.00 40.20 4.06
3494 4061 0.396139 ACTTGTAGCCATGCCCCATG 60.396 55.000 0.00 0.00 41.10 3.66
3495 4062 0.396139 CACTTGTAGCCATGCCCCAT 60.396 55.000 0.00 0.00 0.00 4.00
3496 4063 1.001020 CACTTGTAGCCATGCCCCA 60.001 57.895 0.00 0.00 0.00 4.96
3497 4064 1.754234 CCACTTGTAGCCATGCCCC 60.754 63.158 0.00 0.00 0.00 5.80
3498 4065 0.749454 CTCCACTTGTAGCCATGCCC 60.749 60.000 0.00 0.00 0.00 5.36
3499 4066 0.035056 ACTCCACTTGTAGCCATGCC 60.035 55.000 0.00 0.00 0.00 4.40
3596 4167 5.654209 GGTCCAGCTTATTTTCTTTCCAGAT 59.346 40.000 0.00 0.00 0.00 2.90
3766 4340 1.533625 GCACCAACAGCACCATCTTA 58.466 50.000 0.00 0.00 0.00 2.10
3776 4350 2.631428 CAACGGACGCACCAACAG 59.369 61.111 0.00 0.00 38.90 3.16
3826 4422 1.959226 TCGTTCGAACAGCAAGGCC 60.959 57.895 26.71 0.00 0.00 5.19
3827 4423 1.204312 GTCGTTCGAACAGCAAGGC 59.796 57.895 26.71 8.91 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.