Multiple sequence alignment - TraesCS2D01G189300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G189300 chr2D 100.000 3808 0 0 1 3808 133038245 133042052 0.000000e+00 7033
1 TraesCS2D01G189300 chr2B 92.917 2146 91 19 968 3075 188719005 188721127 0.000000e+00 3064
2 TraesCS2D01G189300 chr2B 87.629 582 30 15 12 578 188717932 188718486 4.150000e-179 638
3 TraesCS2D01G189300 chr2B 89.844 128 7 2 3084 3206 188723342 188723468 3.940000e-35 159
4 TraesCS2D01G189300 chr2A 91.482 1761 95 16 686 2407 140504794 140506538 0.000000e+00 2370
5 TraesCS2D01G189300 chr2A 91.408 1548 83 20 980 2495 139964184 139962655 0.000000e+00 2076
6 TraesCS2D01G189300 chr2A 93.515 586 28 7 2490 3075 139942843 139942268 0.000000e+00 863
7 TraesCS2D01G189300 chr2A 92.008 488 28 4 3073 3549 139942200 139941713 0.000000e+00 675
8 TraesCS2D01G189300 chr2A 91.042 480 19 3 2596 3075 140507089 140507544 8.980000e-176 627
9 TraesCS2D01G189300 chr2A 84.398 532 53 20 1 513 140504111 140504631 2.640000e-136 496
10 TraesCS2D01G189300 chr2A 86.872 358 38 5 616 967 139972584 139972230 3.570000e-105 392
11 TraesCS2D01G189300 chr2A 92.424 264 9 4 3297 3549 140513010 140513273 2.160000e-97 366
12 TraesCS2D01G189300 chr2A 95.197 229 9 2 3073 3301 140507612 140507838 1.010000e-95 361
13 TraesCS2D01G189300 chr2A 82.456 285 44 5 1739 2020 652151714 652151995 1.060000e-60 244
14 TraesCS2D01G189300 chr2A 79.740 385 21 17 12 366 139979516 139979159 3.830000e-55 226
15 TraesCS2D01G189300 chr3A 92.123 292 13 6 2785 3075 403428205 403428487 1.650000e-108 403


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G189300 chr2D 133038245 133042052 3807 False 7033.0 7033 100.00000 1 3808 1 chr2D.!!$F1 3807
1 TraesCS2D01G189300 chr2B 188717932 188723468 5536 False 1287.0 3064 90.13000 12 3206 3 chr2B.!!$F1 3194
2 TraesCS2D01G189300 chr2A 139962655 139964184 1529 True 2076.0 2076 91.40800 980 2495 1 chr2A.!!$R1 1515
3 TraesCS2D01G189300 chr2A 140504111 140507838 3727 False 963.5 2370 90.52975 1 3301 4 chr2A.!!$F3 3300
4 TraesCS2D01G189300 chr2A 139941713 139942843 1130 True 769.0 863 92.76150 2490 3549 2 chr2A.!!$R4 1059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 567 0.037447 AGCCAGGAGGAAGTTCTTGC 59.963 55.0 2.25 0.0 36.89 4.01 F
1397 1671 0.249447 AAGCCGGCAGTTTCTTTTGC 60.249 50.0 31.54 0.0 39.56 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2363 2673 0.251121 CTTGGCCACACCCACACATA 60.251 55.0 3.88 0.0 37.83 2.29 R
2882 3720 0.305922 GTATGCTTAGCAAGGCAGCG 59.694 55.0 12.08 0.0 43.62 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 245 1.762957 TCTCAGGTTCGATCCATTCCC 59.237 52.381 14.83 0.00 0.00 3.97
237 259 2.629639 CCATTCCCTCCTTCCACCTCTA 60.630 54.545 0.00 0.00 0.00 2.43
257 279 4.956700 TCTATCAACTCATCGGAACTCCTT 59.043 41.667 0.00 0.00 0.00 3.36
278 300 2.203126 CCCAGGATGCGGCTCTTC 60.203 66.667 0.00 0.00 31.97 2.87
321 343 1.004918 CGGTCTTCTTCCGGCAACT 60.005 57.895 0.00 0.00 43.68 3.16
366 388 2.345991 CCCGGTTTCTTCAGGCGA 59.654 61.111 0.00 0.00 0.00 5.54
367 389 2.033194 CCCGGTTTCTTCAGGCGAC 61.033 63.158 0.00 0.00 0.00 5.19
369 391 0.673644 CCGGTTTCTTCAGGCGACAT 60.674 55.000 0.00 0.00 0.00 3.06
371 393 0.804989 GGTTTCTTCAGGCGACATGG 59.195 55.000 0.00 0.00 0.00 3.66
373 395 0.690192 TTTCTTCAGGCGACATGGGA 59.310 50.000 0.00 0.00 0.00 4.37
374 396 0.911769 TTCTTCAGGCGACATGGGAT 59.088 50.000 0.00 0.00 0.00 3.85
375 397 0.465705 TCTTCAGGCGACATGGGATC 59.534 55.000 0.00 0.00 0.00 3.36
376 398 0.533755 CTTCAGGCGACATGGGATCC 60.534 60.000 1.92 1.92 0.00 3.36
377 399 0.982852 TTCAGGCGACATGGGATCCT 60.983 55.000 12.58 0.00 0.00 3.24
379 401 0.319728 CAGGCGACATGGGATCCTAG 59.680 60.000 12.58 4.40 0.00 3.02
380 402 0.188587 AGGCGACATGGGATCCTAGA 59.811 55.000 12.58 0.00 0.00 2.43
381 403 0.318762 GGCGACATGGGATCCTAGAC 59.681 60.000 12.58 0.43 0.00 2.59
382 404 1.333177 GCGACATGGGATCCTAGACT 58.667 55.000 12.58 0.00 0.00 3.24
383 405 1.000283 GCGACATGGGATCCTAGACTG 60.000 57.143 12.58 3.51 0.00 3.51
385 407 2.695666 CGACATGGGATCCTAGACTGTT 59.304 50.000 12.58 0.00 0.00 3.16
387 409 3.964031 GACATGGGATCCTAGACTGTTCT 59.036 47.826 12.58 0.00 35.66 3.01
388 410 4.366267 ACATGGGATCCTAGACTGTTCTT 58.634 43.478 12.58 0.00 32.75 2.52
389 411 4.785376 ACATGGGATCCTAGACTGTTCTTT 59.215 41.667 12.58 0.00 32.75 2.52
390 412 5.251700 ACATGGGATCCTAGACTGTTCTTTT 59.748 40.000 12.58 0.00 32.75 2.27
391 413 5.843019 TGGGATCCTAGACTGTTCTTTTT 57.157 39.130 12.58 0.00 32.75 1.94
407 429 1.459450 TTTTTAGGTGCGGGATCAGC 58.541 50.000 5.57 5.57 34.88 4.26
516 552 2.809174 CGATCGTCGTGCAAGCCA 60.809 61.111 7.03 0.00 34.72 4.75
517 553 2.792290 CGATCGTCGTGCAAGCCAG 61.792 63.158 7.03 0.00 34.72 4.85
518 554 2.434884 ATCGTCGTGCAAGCCAGG 60.435 61.111 0.00 0.00 0.00 4.45
519 555 2.835701 GATCGTCGTGCAAGCCAGGA 62.836 60.000 0.00 0.00 36.09 3.86
520 556 2.842394 ATCGTCGTGCAAGCCAGGAG 62.842 60.000 0.00 0.00 38.86 3.69
521 557 2.743928 GTCGTGCAAGCCAGGAGG 60.744 66.667 0.00 0.00 38.86 4.30
522 558 2.922503 TCGTGCAAGCCAGGAGGA 60.923 61.111 0.00 0.00 36.89 3.71
523 559 2.032528 CGTGCAAGCCAGGAGGAA 59.967 61.111 0.00 0.00 36.89 3.36
531 567 0.037447 AGCCAGGAGGAAGTTCTTGC 59.963 55.000 2.25 0.00 36.89 4.01
542 578 3.058224 GGAAGTTCTTGCGCAATGTTACT 60.058 43.478 25.26 19.53 0.00 2.24
546 582 1.539388 TCTTGCGCAATGTTACTTGGG 59.461 47.619 25.26 7.85 40.82 4.12
547 583 1.269448 CTTGCGCAATGTTACTTGGGT 59.731 47.619 25.26 0.00 40.21 4.51
606 698 6.982141 AGTACAACTGTAGAACAAATTCACGA 59.018 34.615 0.00 0.00 37.29 4.35
607 699 6.287107 ACAACTGTAGAACAAATTCACGAG 57.713 37.500 0.00 0.00 37.29 4.18
608 700 5.815740 ACAACTGTAGAACAAATTCACGAGT 59.184 36.000 0.00 0.00 37.29 4.18
609 701 6.315393 ACAACTGTAGAACAAATTCACGAGTT 59.685 34.615 0.00 0.00 37.29 3.01
610 702 6.920569 ACTGTAGAACAAATTCACGAGTTT 57.079 33.333 0.00 0.00 37.29 2.66
611 703 7.316544 ACTGTAGAACAAATTCACGAGTTTT 57.683 32.000 0.00 0.00 37.29 2.43
612 704 8.428186 ACTGTAGAACAAATTCACGAGTTTTA 57.572 30.769 0.00 0.00 37.29 1.52
613 705 8.885722 ACTGTAGAACAAATTCACGAGTTTTAA 58.114 29.630 0.00 0.00 37.29 1.52
614 706 9.155053 CTGTAGAACAAATTCACGAGTTTTAAC 57.845 33.333 0.00 0.00 37.29 2.01
660 752 9.277783 CCCTTTTTCTTCGAATGTCATAGATAT 57.722 33.333 0.00 0.00 0.00 1.63
694 879 9.280174 TGACTTATATTTCGAAACTTTTCAGGT 57.720 29.630 13.81 5.17 37.01 4.00
802 987 9.357652 CACATGGTTTCATCGATTTAAATTTCT 57.642 29.630 1.43 0.00 0.00 2.52
841 1029 4.129380 TCATAGGTTTCATTCAGCGATGG 58.871 43.478 0.00 0.00 0.00 3.51
842 1030 1.098050 AGGTTTCATTCAGCGATGGC 58.902 50.000 0.00 0.00 40.37 4.40
919 1112 6.208994 ACGTGGAGTTCACTACTTTTATCTCT 59.791 38.462 0.00 0.00 43.94 3.10
959 1152 7.934457 TGAATTCCTTTCTTCAGTCTTCTTTG 58.066 34.615 2.27 0.00 35.23 2.77
964 1157 6.322201 TCCTTTCTTCAGTCTTCTTTGCATTT 59.678 34.615 0.00 0.00 0.00 2.32
974 1248 9.495754 CAGTCTTCTTTGCATTTTATAACTAGC 57.504 33.333 0.00 0.00 0.00 3.42
1032 1306 0.933047 GCGTCGCAAAACCTTTGTCC 60.933 55.000 13.44 0.00 0.00 4.02
1047 1321 4.156008 CCTTTGTCCTCTAAACCAAATCCG 59.844 45.833 0.00 0.00 0.00 4.18
1085 1359 2.159226 ACTCTGAATTTACCTCGAGGCG 60.159 50.000 31.56 9.41 39.32 5.52
1122 1396 1.003580 TCCAACTCAGTTGATCCTGGC 59.996 52.381 19.75 0.00 45.28 4.85
1317 1591 2.114638 GCACAAGCAGGGTCAACAA 58.885 52.632 0.00 0.00 41.58 2.83
1397 1671 0.249447 AAGCCGGCAGTTTCTTTTGC 60.249 50.000 31.54 0.00 39.56 3.68
1399 1673 1.215014 GCCGGCAGTTTCTTTTGCAC 61.215 55.000 24.80 0.00 42.02 4.57
1400 1674 0.385390 CCGGCAGTTTCTTTTGCACT 59.615 50.000 0.00 0.00 42.02 4.40
1401 1675 1.606668 CCGGCAGTTTCTTTTGCACTA 59.393 47.619 0.00 0.00 42.02 2.74
1402 1676 2.604614 CCGGCAGTTTCTTTTGCACTAC 60.605 50.000 0.00 0.00 42.02 2.73
1403 1677 2.290641 CGGCAGTTTCTTTTGCACTACT 59.709 45.455 0.00 0.00 42.02 2.57
1432 1706 1.972872 ACTGGTGTTTGAGCTCTTGG 58.027 50.000 16.19 0.00 0.00 3.61
1690 1969 3.249687 GATTGTCTTCAAGCCCCGT 57.750 52.632 0.00 0.00 36.97 5.28
1756 2035 1.609072 GGAGAAGGTTCAGGTTTGTGC 59.391 52.381 0.00 0.00 0.00 4.57
1900 2179 1.817099 CAAGGGCATGGCTCTCGAC 60.817 63.158 19.78 0.68 39.10 4.20
1999 2278 4.410099 AGGATTCTGCCTGAAAAACATCA 58.590 39.130 0.00 0.00 38.29 3.07
2031 2310 7.295340 AGTTAAAAAGTATCCTCACCCTGTTT 58.705 34.615 0.00 0.00 0.00 2.83
2034 2313 5.584551 AAAGTATCCTCACCCTGTTTTCT 57.415 39.130 0.00 0.00 0.00 2.52
2035 2314 5.584551 AAGTATCCTCACCCTGTTTTCTT 57.415 39.130 0.00 0.00 0.00 2.52
2070 2374 2.028876 AGTCCTTTCCCGGTTTGTTTG 58.971 47.619 0.00 0.00 0.00 2.93
2363 2673 5.559991 CGTGTGTGCACAAGTAACATTATGT 60.560 40.000 23.59 0.00 45.50 2.29
2366 2676 7.481483 GTGTGTGCACAAGTAACATTATGTATG 59.519 37.037 23.59 0.00 43.77 2.39
2367 2677 7.174080 TGTGTGCACAAGTAACATTATGTATGT 59.826 33.333 23.59 0.00 42.93 2.29
2368 2678 7.481483 GTGTGCACAAGTAACATTATGTATGTG 59.519 37.037 23.59 19.59 46.75 3.21
2369 2679 7.174080 TGTGCACAAGTAACATTATGTATGTGT 59.826 33.333 19.28 12.97 46.75 3.72
2370 2680 7.481483 GTGCACAAGTAACATTATGTATGTGTG 59.519 37.037 22.19 20.45 46.75 3.82
2371 2681 6.966632 GCACAAGTAACATTATGTATGTGTGG 59.033 38.462 22.19 11.69 46.75 4.17
2477 2793 3.834489 ATGGTTTCACAAAACATGCCA 57.166 38.095 0.00 0.00 46.52 4.92
2867 3705 4.682860 GTGAGGTTGCAGAATCAAAACATG 59.317 41.667 0.00 0.00 0.00 3.21
2868 3706 4.240096 GAGGTTGCAGAATCAAAACATGG 58.760 43.478 0.00 0.00 0.00 3.66
2869 3707 2.738314 GGTTGCAGAATCAAAACATGGC 59.262 45.455 0.00 0.00 0.00 4.40
2870 3708 3.555586 GGTTGCAGAATCAAAACATGGCT 60.556 43.478 0.00 0.00 0.00 4.75
2871 3709 3.306917 TGCAGAATCAAAACATGGCTG 57.693 42.857 0.00 0.00 0.00 4.85
2872 3710 1.997606 GCAGAATCAAAACATGGCTGC 59.002 47.619 0.00 0.00 39.77 5.25
2965 3803 2.615869 CAACATTGCCCCCAAAATACG 58.384 47.619 0.00 0.00 34.05 3.06
2970 3808 2.810870 TGCCCCCAAAATACGTATGT 57.189 45.000 9.24 0.00 0.00 2.29
2999 3839 9.571816 TGCACACATATAATCATCTATTTTCCA 57.428 29.630 0.00 0.00 0.00 3.53
3101 6147 9.445786 GTTTTCTGTCTTTCGAAATTCAACATA 57.554 29.630 11.70 4.38 0.00 2.29
3137 6183 3.431673 TTCCATAGTTGACACATGCCA 57.568 42.857 0.00 0.00 0.00 4.92
3269 6320 5.790593 TCAGTACCACAATACTTTGGTCTC 58.209 41.667 0.00 0.00 42.86 3.36
3276 6327 3.650942 ACAATACTTTGGTCTCTCACCCA 59.349 43.478 0.00 0.00 46.18 4.51
3397 6458 6.296026 TGAAAGTAAAGTGAGTAAGGCACAT 58.704 36.000 0.00 0.00 38.70 3.21
3408 6469 6.260936 GTGAGTAAGGCACATATACTGCAATT 59.739 38.462 6.57 3.90 36.27 2.32
3433 6494 4.307032 AGGAGTCTATTGTTGGCACATT 57.693 40.909 0.00 0.00 39.30 2.71
3473 6534 5.182001 GCAGTCATATTTCAACACCTTCAGT 59.818 40.000 0.00 0.00 0.00 3.41
3475 6536 7.413438 GCAGTCATATTTCAACACCTTCAGTAG 60.413 40.741 0.00 0.00 0.00 2.57
3482 6544 4.536364 CAACACCTTCAGTAGTGTGTTG 57.464 45.455 16.81 16.81 46.22 3.33
3501 6563 7.428183 GTGTGTTGATGTTTAAACTAGTGTGTG 59.572 37.037 18.72 0.00 0.00 3.82
3506 6568 5.682943 TGTTTAAACTAGTGTGTGATGGC 57.317 39.130 18.72 0.00 0.00 4.40
3517 6579 2.684374 TGTGTGATGGCATGAACATAGC 59.316 45.455 3.81 0.00 0.00 2.97
3549 6611 1.975660 TGGCACTAGGTGTTCAAACC 58.024 50.000 0.00 0.00 40.85 3.27
3550 6612 0.872388 GGCACTAGGTGTTCAAACCG 59.128 55.000 0.00 0.00 45.53 4.44
3551 6613 0.872388 GCACTAGGTGTTCAAACCGG 59.128 55.000 0.00 0.00 45.53 5.28
3552 6614 1.812708 GCACTAGGTGTTCAAACCGGT 60.813 52.381 0.00 0.00 45.53 5.28
3553 6615 2.567985 CACTAGGTGTTCAAACCGGTT 58.432 47.619 15.86 15.86 45.53 4.44
3554 6616 2.946990 CACTAGGTGTTCAAACCGGTTT 59.053 45.455 26.87 26.87 45.53 3.27
3555 6617 4.128643 CACTAGGTGTTCAAACCGGTTTA 58.871 43.478 31.17 15.32 45.53 2.01
3556 6618 4.212636 CACTAGGTGTTCAAACCGGTTTAG 59.787 45.833 31.17 23.01 45.53 1.85
3557 6619 1.951602 AGGTGTTCAAACCGGTTTAGC 59.048 47.619 31.17 23.72 45.53 3.09
3558 6620 1.677052 GGTGTTCAAACCGGTTTAGCA 59.323 47.619 31.17 24.41 0.00 3.49
3559 6621 2.295070 GGTGTTCAAACCGGTTTAGCAT 59.705 45.455 31.17 7.53 0.00 3.79
3560 6622 3.243602 GGTGTTCAAACCGGTTTAGCATT 60.244 43.478 31.17 6.70 0.00 3.56
3561 6623 3.733727 GTGTTCAAACCGGTTTAGCATTG 59.266 43.478 31.17 19.07 0.00 2.82
3562 6624 3.381908 TGTTCAAACCGGTTTAGCATTGT 59.618 39.130 31.17 5.03 0.00 2.71
3563 6625 3.634568 TCAAACCGGTTTAGCATTGTG 57.365 42.857 31.17 17.61 0.00 3.33
3564 6626 3.215151 TCAAACCGGTTTAGCATTGTGA 58.785 40.909 31.17 19.61 0.00 3.58
3565 6627 3.632604 TCAAACCGGTTTAGCATTGTGAA 59.367 39.130 31.17 5.95 0.00 3.18
3566 6628 3.636282 AACCGGTTTAGCATTGTGAAC 57.364 42.857 15.86 0.00 0.00 3.18
3567 6629 2.858745 ACCGGTTTAGCATTGTGAACT 58.141 42.857 0.00 0.00 0.00 3.01
3568 6630 3.219281 ACCGGTTTAGCATTGTGAACTT 58.781 40.909 0.00 0.00 0.00 2.66
3569 6631 4.391155 ACCGGTTTAGCATTGTGAACTTA 58.609 39.130 0.00 0.00 0.00 2.24
3570 6632 4.454504 ACCGGTTTAGCATTGTGAACTTAG 59.545 41.667 0.00 0.00 0.00 2.18
3571 6633 4.142687 CCGGTTTAGCATTGTGAACTTAGG 60.143 45.833 0.00 0.00 0.00 2.69
3572 6634 4.142687 CGGTTTAGCATTGTGAACTTAGGG 60.143 45.833 0.00 0.00 0.00 3.53
3573 6635 4.380550 GGTTTAGCATTGTGAACTTAGGGC 60.381 45.833 0.00 0.00 0.00 5.19
3574 6636 2.584835 AGCATTGTGAACTTAGGGCA 57.415 45.000 0.00 0.00 0.00 5.36
3575 6637 3.091633 AGCATTGTGAACTTAGGGCAT 57.908 42.857 0.00 0.00 0.00 4.40
3576 6638 3.019564 AGCATTGTGAACTTAGGGCATC 58.980 45.455 0.00 0.00 0.00 3.91
3577 6639 3.019564 GCATTGTGAACTTAGGGCATCT 58.980 45.455 0.00 0.00 0.00 2.90
3578 6640 3.065925 GCATTGTGAACTTAGGGCATCTC 59.934 47.826 0.00 0.00 0.00 2.75
3579 6641 3.350219 TTGTGAACTTAGGGCATCTCC 57.650 47.619 0.00 0.00 0.00 3.71
3580 6642 2.265367 TGTGAACTTAGGGCATCTCCA 58.735 47.619 0.00 0.00 36.21 3.86
3581 6643 2.642311 TGTGAACTTAGGGCATCTCCAA 59.358 45.455 0.00 0.00 36.21 3.53
3582 6644 3.073798 TGTGAACTTAGGGCATCTCCAAA 59.926 43.478 0.00 0.00 36.21 3.28
3583 6645 3.440522 GTGAACTTAGGGCATCTCCAAAC 59.559 47.826 0.00 0.00 36.21 2.93
3584 6646 2.403252 ACTTAGGGCATCTCCAAACG 57.597 50.000 0.00 0.00 36.21 3.60
3585 6647 1.906574 ACTTAGGGCATCTCCAAACGA 59.093 47.619 0.00 0.00 36.21 3.85
3586 6648 2.280628 CTTAGGGCATCTCCAAACGAC 58.719 52.381 0.00 0.00 36.21 4.34
3587 6649 0.174845 TAGGGCATCTCCAAACGACG 59.825 55.000 0.00 0.00 36.21 5.12
3588 6650 1.375523 GGGCATCTCCAAACGACGT 60.376 57.895 0.00 0.00 36.21 4.34
3589 6651 1.359459 GGGCATCTCCAAACGACGTC 61.359 60.000 5.18 5.18 36.21 4.34
3590 6652 1.359459 GGCATCTCCAAACGACGTCC 61.359 60.000 10.58 0.00 34.01 4.79
3591 6653 1.359459 GCATCTCCAAACGACGTCCC 61.359 60.000 10.58 0.00 0.00 4.46
3592 6654 0.037697 CATCTCCAAACGACGTCCCA 60.038 55.000 10.58 0.00 0.00 4.37
3593 6655 0.037605 ATCTCCAAACGACGTCCCAC 60.038 55.000 10.58 0.00 0.00 4.61
3595 6657 2.027897 CCAAACGACGTCCCACGA 59.972 61.111 10.58 0.00 46.05 4.35
3596 6658 1.592131 CCAAACGACGTCCCACGAA 60.592 57.895 10.58 0.00 46.05 3.85
3597 6659 0.947180 CCAAACGACGTCCCACGAAT 60.947 55.000 10.58 0.00 46.05 3.34
3598 6660 0.863144 CAAACGACGTCCCACGAATT 59.137 50.000 10.58 0.00 46.05 2.17
3599 6661 1.262151 CAAACGACGTCCCACGAATTT 59.738 47.619 10.58 0.00 46.05 1.82
3600 6662 1.142474 AACGACGTCCCACGAATTTC 58.858 50.000 10.58 0.00 46.05 2.17
3601 6663 0.032403 ACGACGTCCCACGAATTTCA 59.968 50.000 10.58 0.00 46.05 2.69
3602 6664 1.337447 ACGACGTCCCACGAATTTCAT 60.337 47.619 10.58 0.00 46.05 2.57
3603 6665 1.323534 CGACGTCCCACGAATTTCATC 59.676 52.381 10.58 0.00 46.05 2.92
3604 6666 2.343101 GACGTCCCACGAATTTCATCA 58.657 47.619 3.51 0.00 46.05 3.07
3605 6667 2.739913 GACGTCCCACGAATTTCATCAA 59.260 45.455 3.51 0.00 46.05 2.57
3606 6668 3.142951 ACGTCCCACGAATTTCATCAAA 58.857 40.909 2.48 0.00 46.05 2.69
3607 6669 3.058501 ACGTCCCACGAATTTCATCAAAC 60.059 43.478 2.48 0.00 46.05 2.93
3608 6670 3.058570 CGTCCCACGAATTTCATCAAACA 60.059 43.478 0.00 0.00 46.05 2.83
3609 6671 4.226761 GTCCCACGAATTTCATCAAACAC 58.773 43.478 0.00 0.00 0.00 3.32
3610 6672 3.058570 TCCCACGAATTTCATCAAACACG 60.059 43.478 0.00 0.00 32.85 4.49
3611 6673 3.058570 CCCACGAATTTCATCAAACACGA 60.059 43.478 0.00 0.00 31.79 4.35
3612 6674 4.379394 CCCACGAATTTCATCAAACACGAT 60.379 41.667 0.00 0.00 31.79 3.73
3613 6675 4.554586 CCACGAATTTCATCAAACACGATG 59.445 41.667 0.00 0.00 43.50 3.84
3614 6676 4.554586 CACGAATTTCATCAAACACGATGG 59.445 41.667 0.00 0.00 42.58 3.51
3615 6677 4.215399 ACGAATTTCATCAAACACGATGGT 59.785 37.500 0.00 0.00 42.58 3.55
3616 6678 5.410132 ACGAATTTCATCAAACACGATGGTA 59.590 36.000 0.00 0.00 42.58 3.25
3617 6679 6.093495 ACGAATTTCATCAAACACGATGGTAT 59.907 34.615 0.00 0.00 42.58 2.73
3618 6680 6.966632 CGAATTTCATCAAACACGATGGTATT 59.033 34.615 0.00 0.00 42.58 1.89
3619 6681 8.119845 CGAATTTCATCAAACACGATGGTATTA 58.880 33.333 0.00 0.00 42.58 0.98
3620 6682 9.781834 GAATTTCATCAAACACGATGGTATTAA 57.218 29.630 0.00 0.00 42.58 1.40
3621 6683 9.567848 AATTTCATCAAACACGATGGTATTAAC 57.432 29.630 0.00 0.00 42.58 2.01
3622 6684 7.915293 TTCATCAAACACGATGGTATTAACT 57.085 32.000 0.00 0.00 42.58 2.24
3623 6685 9.438228 TTTCATCAAACACGATGGTATTAACTA 57.562 29.630 0.00 0.00 42.58 2.24
3624 6686 9.438228 TTCATCAAACACGATGGTATTAACTAA 57.562 29.630 0.00 0.00 42.58 2.24
3625 6687 9.438228 TCATCAAACACGATGGTATTAACTAAA 57.562 29.630 0.00 0.00 42.58 1.85
3632 6694 9.661563 ACACGATGGTATTAACTAAAATTCAGA 57.338 29.630 0.00 0.00 0.00 3.27
3633 6695 9.916397 CACGATGGTATTAACTAAAATTCAGAC 57.084 33.333 0.00 0.00 0.00 3.51
3634 6696 8.814235 ACGATGGTATTAACTAAAATTCAGACG 58.186 33.333 0.00 0.00 0.00 4.18
3635 6697 8.814235 CGATGGTATTAACTAAAATTCAGACGT 58.186 33.333 0.00 0.00 0.00 4.34
3636 6698 9.916397 GATGGTATTAACTAAAATTCAGACGTG 57.084 33.333 0.00 0.00 0.00 4.49
3637 6699 8.836268 TGGTATTAACTAAAATTCAGACGTGT 57.164 30.769 0.00 0.00 0.00 4.49
3638 6700 9.926158 TGGTATTAACTAAAATTCAGACGTGTA 57.074 29.630 0.00 0.00 0.00 2.90
3650 6712 9.924650 AAATTCAGACGTGTATATATAAGGGAC 57.075 33.333 0.00 0.00 0.00 4.46
3651 6713 8.645814 ATTCAGACGTGTATATATAAGGGACA 57.354 34.615 0.00 0.00 0.00 4.02
3652 6714 7.683437 TCAGACGTGTATATATAAGGGACAG 57.317 40.000 0.00 0.00 0.00 3.51
3653 6715 7.229308 TCAGACGTGTATATATAAGGGACAGT 58.771 38.462 0.00 0.00 0.00 3.55
3654 6716 8.377799 TCAGACGTGTATATATAAGGGACAGTA 58.622 37.037 0.00 0.00 0.00 2.74
3655 6717 9.175312 CAGACGTGTATATATAAGGGACAGTAT 57.825 37.037 0.00 0.00 0.00 2.12
3656 6718 9.750783 AGACGTGTATATATAAGGGACAGTATT 57.249 33.333 0.00 0.00 0.00 1.89
3658 6720 8.964772 ACGTGTATATATAAGGGACAGTATTCC 58.035 37.037 0.00 0.00 34.52 3.01
3659 6721 8.963725 CGTGTATATATAAGGGACAGTATTCCA 58.036 37.037 0.00 0.00 37.40 3.53
3663 6725 4.891992 ATAAGGGACAGTATTCCATCCG 57.108 45.455 0.00 0.00 37.40 4.18
3664 6726 2.176247 AGGGACAGTATTCCATCCGT 57.824 50.000 0.00 0.00 37.40 4.69
3665 6727 2.478292 AGGGACAGTATTCCATCCGTT 58.522 47.619 0.00 0.00 37.40 4.44
3666 6728 2.844348 AGGGACAGTATTCCATCCGTTT 59.156 45.455 0.00 0.00 37.40 3.60
3667 6729 4.035112 AGGGACAGTATTCCATCCGTTTA 58.965 43.478 0.00 0.00 37.40 2.01
3668 6730 4.472108 AGGGACAGTATTCCATCCGTTTAA 59.528 41.667 0.00 0.00 37.40 1.52
3669 6731 4.573607 GGGACAGTATTCCATCCGTTTAAC 59.426 45.833 0.00 0.00 37.40 2.01
3670 6732 5.425630 GGACAGTATTCCATCCGTTTAACT 58.574 41.667 0.00 0.00 35.49 2.24
3671 6733 5.878669 GGACAGTATTCCATCCGTTTAACTT 59.121 40.000 0.00 0.00 35.49 2.66
3672 6734 7.043565 GGACAGTATTCCATCCGTTTAACTTA 58.956 38.462 0.00 0.00 35.49 2.24
3673 6735 7.550196 GGACAGTATTCCATCCGTTTAACTTAA 59.450 37.037 0.00 0.00 35.49 1.85
3674 6736 8.851541 ACAGTATTCCATCCGTTTAACTTAAA 57.148 30.769 0.00 0.00 0.00 1.52
3675 6737 8.724229 ACAGTATTCCATCCGTTTAACTTAAAC 58.276 33.333 12.65 12.65 43.43 2.01
3676 6738 8.943002 CAGTATTCCATCCGTTTAACTTAAACT 58.057 33.333 18.14 2.10 44.40 2.66
3677 6739 9.511272 AGTATTCCATCCGTTTAACTTAAACTT 57.489 29.630 18.14 4.89 44.40 2.66
3702 6764 4.773323 AAAAACTAGACCTAGTACGCGT 57.227 40.909 19.17 19.17 44.96 6.01
3703 6765 3.754188 AAACTAGACCTAGTACGCGTG 57.246 47.619 24.59 7.05 44.96 5.34
3704 6766 1.661341 ACTAGACCTAGTACGCGTGG 58.339 55.000 24.59 17.30 43.98 4.94
3705 6767 1.065854 ACTAGACCTAGTACGCGTGGT 60.066 52.381 24.59 20.84 43.98 4.16
3706 6768 1.596727 CTAGACCTAGTACGCGTGGTC 59.403 57.143 29.33 29.33 46.67 4.02
3707 6769 2.174334 GACCTAGTACGCGTGGTCA 58.826 57.895 30.70 8.40 45.87 4.02
3708 6770 0.523072 GACCTAGTACGCGTGGTCAA 59.477 55.000 30.70 8.02 45.87 3.18
3709 6771 0.242017 ACCTAGTACGCGTGGTCAAC 59.758 55.000 24.59 11.95 0.00 3.18
3710 6772 0.457337 CCTAGTACGCGTGGTCAACC 60.457 60.000 24.59 0.47 0.00 3.77
3711 6773 0.524862 CTAGTACGCGTGGTCAACCT 59.475 55.000 24.59 8.24 36.82 3.50
3712 6774 0.241749 TAGTACGCGTGGTCAACCTG 59.758 55.000 24.59 0.00 36.82 4.00
3713 6775 2.025418 GTACGCGTGGTCAACCTGG 61.025 63.158 24.59 0.00 36.82 4.45
3714 6776 3.869473 TACGCGTGGTCAACCTGGC 62.869 63.158 24.59 3.19 36.82 4.85
3732 6794 4.415332 CAGCGGCACCGTAGTCGT 62.415 66.667 11.27 0.00 39.17 4.34
3733 6795 4.112341 AGCGGCACCGTAGTCGTC 62.112 66.667 11.27 0.00 39.17 4.20
3735 6797 4.487412 CGGCACCGTAGTCGTCCC 62.487 72.222 0.00 0.00 35.01 4.46
3736 6798 3.066814 GGCACCGTAGTCGTCCCT 61.067 66.667 0.00 0.00 35.01 4.20
3737 6799 2.488820 GCACCGTAGTCGTCCCTC 59.511 66.667 0.00 0.00 35.01 4.30
3738 6800 2.789917 CACCGTAGTCGTCCCTCG 59.210 66.667 0.00 0.00 41.41 4.63
3739 6801 2.037136 CACCGTAGTCGTCCCTCGT 61.037 63.158 0.00 0.00 40.80 4.18
3740 6802 1.743252 ACCGTAGTCGTCCCTCGTC 60.743 63.158 0.00 0.00 40.80 4.20
3741 6803 2.699809 CGTAGTCGTCCCTCGTCG 59.300 66.667 0.00 0.00 40.80 5.12
3742 6804 1.807165 CGTAGTCGTCCCTCGTCGA 60.807 63.158 0.00 0.00 40.80 4.20
3743 6805 1.354337 CGTAGTCGTCCCTCGTCGAA 61.354 60.000 0.00 0.00 40.80 3.71
3744 6806 0.373024 GTAGTCGTCCCTCGTCGAAG 59.627 60.000 0.00 0.00 40.80 3.79
3745 6807 0.036952 TAGTCGTCCCTCGTCGAAGT 60.037 55.000 0.00 0.00 40.80 3.01
3746 6808 1.154263 GTCGTCCCTCGTCGAAGTG 60.154 63.158 0.00 0.00 40.80 3.16
3747 6809 2.504244 CGTCCCTCGTCGAAGTGC 60.504 66.667 0.00 0.00 34.52 4.40
3748 6810 2.963371 GTCCCTCGTCGAAGTGCT 59.037 61.111 0.00 0.00 0.00 4.40
3749 6811 1.153997 GTCCCTCGTCGAAGTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
3750 6812 2.182030 CCCTCGTCGAAGTGCTCC 59.818 66.667 0.00 0.00 0.00 4.70
3751 6813 2.182030 CCTCGTCGAAGTGCTCCC 59.818 66.667 0.00 0.00 0.00 4.30
3752 6814 2.344203 CCTCGTCGAAGTGCTCCCT 61.344 63.158 0.00 0.00 0.00 4.20
3753 6815 1.137825 CTCGTCGAAGTGCTCCCTC 59.862 63.158 0.00 0.00 0.00 4.30
3754 6816 2.182030 CGTCGAAGTGCTCCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
3755 6817 2.636412 CGTCGAAGTGCTCCCTCCA 61.636 63.158 0.00 0.00 0.00 3.86
3756 6818 1.216710 GTCGAAGTGCTCCCTCCAG 59.783 63.158 0.00 0.00 0.00 3.86
3757 6819 2.125350 CGAAGTGCTCCCTCCAGC 60.125 66.667 0.00 0.00 40.13 4.85
3758 6820 2.125350 GAAGTGCTCCCTCCAGCG 60.125 66.667 0.00 0.00 42.92 5.18
3759 6821 3.672295 GAAGTGCTCCCTCCAGCGG 62.672 68.421 0.00 0.00 42.92 5.52
3777 6839 4.760047 CGGAAGGGCACGGTGAGG 62.760 72.222 13.29 0.00 0.00 3.86
3778 6840 3.319198 GGAAGGGCACGGTGAGGA 61.319 66.667 13.29 0.00 0.00 3.71
3779 6841 2.266055 GAAGGGCACGGTGAGGAG 59.734 66.667 13.29 0.00 0.00 3.69
3780 6842 2.526873 AAGGGCACGGTGAGGAGT 60.527 61.111 13.29 0.00 0.00 3.85
3781 6843 2.508586 GAAGGGCACGGTGAGGAGTC 62.509 65.000 13.29 0.00 0.00 3.36
3782 6844 3.311110 GGGCACGGTGAGGAGTCA 61.311 66.667 13.29 0.00 0.00 3.41
3783 6845 2.660064 GGGCACGGTGAGGAGTCAT 61.660 63.158 13.29 0.00 34.36 3.06
3784 6846 1.296715 GGCACGGTGAGGAGTCATT 59.703 57.895 13.29 0.00 34.36 2.57
3785 6847 0.741221 GGCACGGTGAGGAGTCATTC 60.741 60.000 13.29 0.00 34.36 2.67
3786 6848 0.247736 GCACGGTGAGGAGTCATTCT 59.752 55.000 13.29 0.00 34.36 2.40
3787 6849 2.001812 CACGGTGAGGAGTCATTCTG 57.998 55.000 0.74 0.00 34.36 3.02
3788 6850 0.247736 ACGGTGAGGAGTCATTCTGC 59.752 55.000 0.00 0.00 34.36 4.26
3790 6852 1.066573 CGGTGAGGAGTCATTCTGCTT 60.067 52.381 0.00 0.00 44.72 3.91
3791 6853 2.626840 GGTGAGGAGTCATTCTGCTTC 58.373 52.381 0.00 0.00 44.72 3.86
3792 6854 2.235898 GGTGAGGAGTCATTCTGCTTCT 59.764 50.000 0.00 0.00 44.72 2.85
3793 6855 3.520569 GTGAGGAGTCATTCTGCTTCTC 58.479 50.000 0.00 0.00 44.72 2.87
3794 6856 2.499289 TGAGGAGTCATTCTGCTTCTCC 59.501 50.000 0.00 0.00 44.72 3.71
3795 6857 2.831565 AGGAGTCATTCTGCTTCTCCT 58.168 47.619 6.25 6.25 46.68 3.69
3796 6858 2.903798 GGAGTCATTCTGCTTCTCCTG 58.096 52.381 0.00 0.00 40.78 3.86
3797 6859 2.278854 GAGTCATTCTGCTTCTCCTGC 58.721 52.381 0.00 0.00 0.00 4.85
3798 6860 1.907936 AGTCATTCTGCTTCTCCTGCT 59.092 47.619 0.00 0.00 0.00 4.24
3799 6861 2.093553 AGTCATTCTGCTTCTCCTGCTC 60.094 50.000 0.00 0.00 0.00 4.26
3800 6862 1.209019 TCATTCTGCTTCTCCTGCTCC 59.791 52.381 0.00 0.00 0.00 4.70
3801 6863 0.177604 ATTCTGCTTCTCCTGCTCCG 59.822 55.000 0.00 0.00 0.00 4.63
3802 6864 1.188219 TTCTGCTTCTCCTGCTCCGT 61.188 55.000 0.00 0.00 0.00 4.69
3803 6865 1.447489 CTGCTTCTCCTGCTCCGTG 60.447 63.158 0.00 0.00 0.00 4.94
3804 6866 2.817396 GCTTCTCCTGCTCCGTGC 60.817 66.667 0.00 0.00 43.25 5.34
3805 6867 2.507992 CTTCTCCTGCTCCGTGCG 60.508 66.667 0.00 0.00 46.63 5.34
3806 6868 3.997064 CTTCTCCTGCTCCGTGCGG 62.997 68.421 3.94 3.94 46.63 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.945668 GTTCTGGCCATATGACTTGACC 59.054 50.000 5.51 0.00 0.00 4.02
223 245 4.026744 TGAGTTGATAGAGGTGGAAGGAG 58.973 47.826 0.00 0.00 0.00 3.69
237 259 3.429547 CGAAGGAGTTCCGATGAGTTGAT 60.430 47.826 0.00 0.00 42.08 2.57
278 300 1.477295 GAGGAACGAACTGAGGTAGGG 59.523 57.143 0.00 0.00 0.00 3.53
338 360 0.034476 GAAACCGGGGTCGAGAAACT 59.966 55.000 6.32 0.00 39.00 2.66
366 388 4.000928 AGAACAGTCTAGGATCCCATGT 57.999 45.455 8.55 3.62 29.93 3.21
367 389 5.365021 AAAGAACAGTCTAGGATCCCATG 57.635 43.478 8.55 2.95 32.16 3.66
369 391 5.843019 AAAAAGAACAGTCTAGGATCCCA 57.157 39.130 8.55 0.00 32.16 4.37
388 410 1.459450 GCTGATCCCGCACCTAAAAA 58.541 50.000 0.00 0.00 0.00 1.94
389 411 0.393808 GGCTGATCCCGCACCTAAAA 60.394 55.000 6.45 0.00 0.00 1.52
390 412 1.223487 GGCTGATCCCGCACCTAAA 59.777 57.895 6.45 0.00 0.00 1.85
391 413 1.689233 AGGCTGATCCCGCACCTAA 60.689 57.895 6.45 0.00 34.51 2.69
392 414 2.041922 AGGCTGATCCCGCACCTA 60.042 61.111 6.45 0.00 34.51 3.08
393 415 3.790437 CAGGCTGATCCCGCACCT 61.790 66.667 9.42 0.00 34.51 4.00
394 416 4.101448 ACAGGCTGATCCCGCACC 62.101 66.667 23.66 0.00 34.51 5.01
395 417 2.599645 ATCACAGGCTGATCCCGCAC 62.600 60.000 23.66 0.00 34.07 5.34
396 418 1.913951 AATCACAGGCTGATCCCGCA 61.914 55.000 23.66 0.00 38.82 5.69
397 419 1.153086 AATCACAGGCTGATCCCGC 60.153 57.895 23.66 0.00 38.82 6.13
398 420 0.877649 CGAATCACAGGCTGATCCCG 60.878 60.000 23.66 13.23 38.82 5.14
399 421 0.179000 ACGAATCACAGGCTGATCCC 59.821 55.000 23.66 5.14 38.82 3.85
400 422 1.293924 CACGAATCACAGGCTGATCC 58.706 55.000 23.66 4.43 38.82 3.36
401 423 1.929836 GACACGAATCACAGGCTGATC 59.070 52.381 23.66 12.17 38.82 2.92
402 424 1.737029 CGACACGAATCACAGGCTGAT 60.737 52.381 23.66 1.80 41.85 2.90
403 425 0.388520 CGACACGAATCACAGGCTGA 60.389 55.000 23.66 0.00 0.00 4.26
407 429 0.708370 CGAACGACACGAATCACAGG 59.292 55.000 0.00 0.00 0.00 4.00
516 552 0.108585 TTGCGCAAGAACTTCCTCCT 59.891 50.000 21.02 0.00 43.02 3.69
517 553 1.135575 CATTGCGCAAGAACTTCCTCC 60.136 52.381 28.62 0.00 43.02 4.30
518 554 1.537202 ACATTGCGCAAGAACTTCCTC 59.463 47.619 28.62 0.00 43.02 3.71
519 555 1.609208 ACATTGCGCAAGAACTTCCT 58.391 45.000 28.62 5.83 43.02 3.36
520 556 2.422276 AACATTGCGCAAGAACTTCC 57.578 45.000 28.62 0.00 43.02 3.46
521 557 4.147219 AGTAACATTGCGCAAGAACTTC 57.853 40.909 28.62 15.70 43.02 3.01
522 558 4.290155 CAAGTAACATTGCGCAAGAACTT 58.710 39.130 28.62 26.09 43.02 2.66
523 559 3.304659 CCAAGTAACATTGCGCAAGAACT 60.305 43.478 28.62 22.48 43.02 3.01
531 567 6.431198 AGTTATAACCCAAGTAACATTGCG 57.569 37.500 12.05 0.00 32.22 4.85
580 616 7.493320 TCGTGAATTTGTTCTACAGTTGTACTT 59.507 33.333 0.00 0.00 0.00 2.24
587 679 6.920569 AAACTCGTGAATTTGTTCTACAGT 57.079 33.333 0.00 0.00 0.00 3.55
588 680 9.155053 GTTAAAACTCGTGAATTTGTTCTACAG 57.845 33.333 0.00 0.00 0.00 2.74
600 692 5.542616 TCAAAACGGTTAAAACTCGTGAA 57.457 34.783 9.17 0.00 36.46 3.18
606 698 8.880878 AATGCTTAATCAAAACGGTTAAAACT 57.119 26.923 0.00 0.00 0.00 2.66
609 701 9.194271 GGTAAATGCTTAATCAAAACGGTTAAA 57.806 29.630 0.00 0.00 0.00 1.52
610 702 7.813627 GGGTAAATGCTTAATCAAAACGGTTAA 59.186 33.333 0.00 0.00 0.00 2.01
611 703 7.177041 AGGGTAAATGCTTAATCAAAACGGTTA 59.823 33.333 0.00 0.00 0.00 2.85
612 704 6.014925 AGGGTAAATGCTTAATCAAAACGGTT 60.015 34.615 0.00 0.00 0.00 4.44
613 705 5.479027 AGGGTAAATGCTTAATCAAAACGGT 59.521 36.000 0.00 0.00 0.00 4.83
614 706 5.961272 AGGGTAAATGCTTAATCAAAACGG 58.039 37.500 0.00 0.00 0.00 4.44
686 779 9.502091 GGTTGATGTGCTATATATACCTGAAAA 57.498 33.333 0.00 0.00 0.00 2.29
694 879 7.181845 TGGATGTGGGTTGATGTGCTATATATA 59.818 37.037 0.00 0.00 0.00 0.86
695 880 6.012596 TGGATGTGGGTTGATGTGCTATATAT 60.013 38.462 0.00 0.00 0.00 0.86
810 995 8.844244 GCTGAATGAAACCTATGAGATAACAAT 58.156 33.333 0.00 0.00 0.00 2.71
814 999 6.816136 TCGCTGAATGAAACCTATGAGATAA 58.184 36.000 0.00 0.00 0.00 1.75
841 1029 4.676849 CTGAAAGCCTCAAAGTAAGAGC 57.323 45.455 0.00 0.00 32.17 4.09
919 1112 8.934023 AAAGGAATTCAGGATTGTGTTTACTA 57.066 30.769 7.93 0.00 0.00 1.82
959 1152 7.534239 GCCACGATTTAGCTAGTTATAAAATGC 59.466 37.037 0.00 0.00 0.00 3.56
1032 1306 5.220605 GGAATCGAACGGATTTGGTTTAGAG 60.221 44.000 0.00 0.00 45.33 2.43
1047 1321 3.729462 CAGAGTCTGAGTCGGAATCGAAC 60.729 52.174 20.54 1.32 38.64 3.95
1317 1591 4.207165 CGGTTTCATGGGTCCTATTCATT 58.793 43.478 0.00 0.00 0.00 2.57
1397 1671 6.328641 ACACCAGTAAGAAGTACAGTAGTG 57.671 41.667 0.00 0.00 34.88 2.74
1399 1673 7.431249 TCAAACACCAGTAAGAAGTACAGTAG 58.569 38.462 0.00 0.00 34.88 2.57
1400 1674 7.350744 TCAAACACCAGTAAGAAGTACAGTA 57.649 36.000 0.00 0.00 34.88 2.74
1401 1675 6.229936 TCAAACACCAGTAAGAAGTACAGT 57.770 37.500 0.00 0.00 34.88 3.55
1402 1676 5.177696 GCTCAAACACCAGTAAGAAGTACAG 59.822 44.000 0.00 0.00 34.88 2.74
1403 1677 5.054477 GCTCAAACACCAGTAAGAAGTACA 58.946 41.667 0.00 0.00 34.88 2.90
1478 1757 2.698274 GGGCTTCCAGGTTTTTGAGAAA 59.302 45.455 0.00 0.00 0.00 2.52
1689 1968 1.957877 CTGAGGATCCGACTTCCCTAC 59.042 57.143 5.98 0.00 33.45 3.18
1690 1969 1.850998 TCTGAGGATCCGACTTCCCTA 59.149 52.381 5.98 0.00 33.45 3.53
1756 2035 1.826921 GCATGGATCCCAGCACCAG 60.827 63.158 17.84 0.00 36.75 4.00
1900 2179 4.263018 TCTATCGATTTCTGAGCCCATG 57.737 45.455 1.71 0.00 0.00 3.66
1921 2200 3.119459 ACTGAAGTCGATGAAGCACGTAT 60.119 43.478 0.00 0.00 0.00 3.06
1932 2211 5.860941 AGATATGGTGAACTGAAGTCGAT 57.139 39.130 0.00 0.00 0.00 3.59
2031 2310 5.014123 AGGACTGTACAATTCCATGGAAGAA 59.986 40.000 29.98 10.28 37.56 2.52
2034 2313 4.927267 AGGACTGTACAATTCCATGGAA 57.073 40.909 28.92 28.92 38.59 3.53
2035 2314 4.927267 AAGGACTGTACAATTCCATGGA 57.073 40.909 11.44 11.44 0.00 3.41
2070 2374 2.693074 ACATTGTTCCAAACCCACTGAC 59.307 45.455 0.00 0.00 0.00 3.51
2096 2400 0.588252 GCAGTGAGACGTGTTGCATT 59.412 50.000 0.00 0.00 34.99 3.56
2099 2403 1.160329 AAGGCAGTGAGACGTGTTGC 61.160 55.000 0.00 0.00 0.00 4.17
2289 2599 9.724839 TTAGCTTAAAAACATGACACTGTTTAC 57.275 29.630 0.00 5.28 45.98 2.01
2363 2673 0.251121 CTTGGCCACACCCACACATA 60.251 55.000 3.88 0.00 37.83 2.29
2366 2676 0.466555 TTACTTGGCCACACCCACAC 60.467 55.000 3.88 0.00 37.83 3.82
2367 2677 0.466555 GTTACTTGGCCACACCCACA 60.467 55.000 3.88 0.00 37.83 4.17
2368 2678 0.466555 TGTTACTTGGCCACACCCAC 60.467 55.000 3.88 0.00 37.83 4.61
2369 2679 0.480690 ATGTTACTTGGCCACACCCA 59.519 50.000 3.88 0.00 37.83 4.51
2370 2680 1.627864 AATGTTACTTGGCCACACCC 58.372 50.000 3.88 0.00 37.83 4.61
2371 2681 3.744238 AAAATGTTACTTGGCCACACC 57.256 42.857 3.88 0.00 39.84 4.16
2409 2725 4.580580 TGCGAAGATTCTATCTGCACTAGA 59.419 41.667 0.00 0.00 40.13 2.43
2423 2739 2.163818 TTCGACCTTGTGCGAAGATT 57.836 45.000 0.00 0.00 41.07 2.40
2424 2740 2.163818 TTTCGACCTTGTGCGAAGAT 57.836 45.000 0.00 0.00 45.71 2.40
2477 2793 8.445588 TCTTTCTTTGTCCTTAAAGACCCTAAT 58.554 33.333 1.78 0.00 44.04 1.73
2882 3720 0.305922 GTATGCTTAGCAAGGCAGCG 59.694 55.000 12.08 0.00 43.62 5.18
2954 3792 2.098443 GCACCACATACGTATTTTGGGG 59.902 50.000 26.26 24.75 39.92 4.96
2970 3808 8.922931 AAATAGATGATTATATGTGTGCACCA 57.077 30.769 15.69 12.37 0.00 4.17
2999 3839 6.996509 AGCAATTTGGTTGATCACAAACTAT 58.003 32.000 12.26 2.18 43.37 2.12
3071 3912 8.203937 TGAATTTCGAAAGACAGAAAACTACA 57.796 30.769 16.80 0.00 41.84 2.74
3075 3916 7.734538 TGTTGAATTTCGAAAGACAGAAAAC 57.265 32.000 16.80 12.61 41.84 2.43
3077 3918 9.051679 TCTATGTTGAATTTCGAAAGACAGAAA 57.948 29.630 16.80 8.27 41.84 2.52
3080 4874 9.663904 TTTTCTATGTTGAATTTCGAAAGACAG 57.336 29.630 16.80 7.71 41.84 3.51
3088 6134 6.523201 CGAGGGTTTTTCTATGTTGAATTTCG 59.477 38.462 0.00 0.00 0.00 3.46
3101 6147 1.133606 TGGAAAGCCGAGGGTTTTTCT 60.134 47.619 18.73 0.00 44.45 2.52
3176 6222 8.227791 GCTTAAACTCGTCAATAGTTGAATGAA 58.772 33.333 0.00 0.00 42.15 2.57
3269 6320 0.474184 ACTGGTTTGACCTGGGTGAG 59.526 55.000 0.00 0.00 41.00 3.51
3276 6327 4.102524 TCACAAGTCATACTGGTTTGACCT 59.897 41.667 16.48 5.50 40.75 3.85
3347 6408 2.945668 AGTTTGCTTCCACACTTGACTC 59.054 45.455 0.00 0.00 27.78 3.36
3373 6434 5.676552 TGTGCCTTACTCACTTTACTTTCA 58.323 37.500 0.00 0.00 35.58 2.69
3397 6458 9.764363 CAATAGACTCCTTGTAATTGCAGTATA 57.236 33.333 0.00 0.00 30.51 1.47
3408 6469 4.041075 TGTGCCAACAATAGACTCCTTGTA 59.959 41.667 4.31 0.00 34.61 2.41
3433 6494 3.294493 GCCAAGCTTCCGCCAACA 61.294 61.111 0.00 0.00 36.60 3.33
3473 6534 8.822855 CACACTAGTTTAAACATCAACACACTA 58.177 33.333 20.06 0.00 0.00 2.74
3475 6536 7.428183 CACACACTAGTTTAAACATCAACACAC 59.572 37.037 20.06 0.00 0.00 3.82
3478 6539 7.851387 TCACACACTAGTTTAAACATCAACA 57.149 32.000 20.06 0.00 0.00 3.33
3482 6544 6.072728 TGCCATCACACACTAGTTTAAACATC 60.073 38.462 20.06 0.00 0.00 3.06
3501 6563 1.951602 TGCTGCTATGTTCATGCCATC 59.048 47.619 0.00 0.00 0.00 3.51
3506 6568 4.056740 CCTAGAGTGCTGCTATGTTCATG 58.943 47.826 0.00 0.00 0.00 3.07
3517 6579 0.322975 AGTGCCAACCTAGAGTGCTG 59.677 55.000 0.00 0.00 0.00 4.41
3549 6611 4.142687 CCCTAAGTTCACAATGCTAAACCG 60.143 45.833 0.00 0.00 0.00 4.44
3550 6612 4.380550 GCCCTAAGTTCACAATGCTAAACC 60.381 45.833 0.00 0.00 0.00 3.27
3551 6613 4.217550 TGCCCTAAGTTCACAATGCTAAAC 59.782 41.667 0.00 0.00 0.00 2.01
3552 6614 4.402829 TGCCCTAAGTTCACAATGCTAAA 58.597 39.130 0.00 0.00 0.00 1.85
3553 6615 4.027674 TGCCCTAAGTTCACAATGCTAA 57.972 40.909 0.00 0.00 0.00 3.09
3554 6616 3.712016 TGCCCTAAGTTCACAATGCTA 57.288 42.857 0.00 0.00 0.00 3.49
3555 6617 2.584835 TGCCCTAAGTTCACAATGCT 57.415 45.000 0.00 0.00 0.00 3.79
3556 6618 3.019564 AGATGCCCTAAGTTCACAATGC 58.980 45.455 0.00 0.00 0.00 3.56
3557 6619 3.629398 GGAGATGCCCTAAGTTCACAATG 59.371 47.826 0.00 0.00 0.00 2.82
3558 6620 3.266772 TGGAGATGCCCTAAGTTCACAAT 59.733 43.478 0.00 0.00 34.97 2.71
3559 6621 2.642311 TGGAGATGCCCTAAGTTCACAA 59.358 45.455 0.00 0.00 34.97 3.33
3560 6622 2.265367 TGGAGATGCCCTAAGTTCACA 58.735 47.619 0.00 0.00 34.97 3.58
3561 6623 3.350219 TTGGAGATGCCCTAAGTTCAC 57.650 47.619 0.00 0.00 34.97 3.18
3562 6624 3.686016 GTTTGGAGATGCCCTAAGTTCA 58.314 45.455 0.00 0.00 34.97 3.18
3563 6625 2.678336 CGTTTGGAGATGCCCTAAGTTC 59.322 50.000 0.00 0.00 34.97 3.01
3564 6626 2.304761 TCGTTTGGAGATGCCCTAAGTT 59.695 45.455 0.00 0.00 34.97 2.66
3565 6627 1.906574 TCGTTTGGAGATGCCCTAAGT 59.093 47.619 0.00 0.00 34.97 2.24
3566 6628 2.280628 GTCGTTTGGAGATGCCCTAAG 58.719 52.381 0.00 0.00 34.97 2.18
3567 6629 1.404986 CGTCGTTTGGAGATGCCCTAA 60.405 52.381 0.00 0.00 34.97 2.69
3568 6630 0.174845 CGTCGTTTGGAGATGCCCTA 59.825 55.000 0.00 0.00 34.97 3.53
3569 6631 1.079127 CGTCGTTTGGAGATGCCCT 60.079 57.895 0.00 0.00 34.97 5.19
3570 6632 1.359459 GACGTCGTTTGGAGATGCCC 61.359 60.000 0.00 0.00 34.97 5.36
3571 6633 1.359459 GGACGTCGTTTGGAGATGCC 61.359 60.000 9.92 0.00 37.10 4.40
3572 6634 1.359459 GGGACGTCGTTTGGAGATGC 61.359 60.000 9.92 0.00 0.00 3.91
3573 6635 0.037697 TGGGACGTCGTTTGGAGATG 60.038 55.000 9.92 0.00 0.00 2.90
3574 6636 0.037605 GTGGGACGTCGTTTGGAGAT 60.038 55.000 9.92 0.00 0.00 2.75
3575 6637 1.364901 GTGGGACGTCGTTTGGAGA 59.635 57.895 9.92 0.00 0.00 3.71
3576 6638 2.019951 CGTGGGACGTCGTTTGGAG 61.020 63.158 9.92 0.00 36.74 3.86
3577 6639 2.014064 TTCGTGGGACGTCGTTTGGA 62.014 55.000 9.92 0.14 43.14 3.53
3578 6640 0.947180 ATTCGTGGGACGTCGTTTGG 60.947 55.000 9.92 0.00 43.14 3.28
3579 6641 0.863144 AATTCGTGGGACGTCGTTTG 59.137 50.000 9.92 0.00 43.14 2.93
3580 6642 1.528161 GAAATTCGTGGGACGTCGTTT 59.472 47.619 9.92 2.06 43.14 3.60
3581 6643 1.142474 GAAATTCGTGGGACGTCGTT 58.858 50.000 9.92 0.00 43.14 3.85
3582 6644 0.032403 TGAAATTCGTGGGACGTCGT 59.968 50.000 9.92 0.00 43.14 4.34
3583 6645 1.323534 GATGAAATTCGTGGGACGTCG 59.676 52.381 9.92 0.00 43.14 5.12
3584 6646 2.343101 TGATGAAATTCGTGGGACGTC 58.657 47.619 7.13 7.13 43.14 4.34
3585 6647 2.465860 TGATGAAATTCGTGGGACGT 57.534 45.000 0.00 0.00 43.14 4.34
3586 6648 3.058570 TGTTTGATGAAATTCGTGGGACG 60.059 43.478 0.00 0.00 44.19 4.79
3587 6649 4.226761 GTGTTTGATGAAATTCGTGGGAC 58.773 43.478 0.00 0.00 0.00 4.46
3588 6650 3.058570 CGTGTTTGATGAAATTCGTGGGA 60.059 43.478 0.00 0.00 0.00 4.37
3589 6651 3.058570 TCGTGTTTGATGAAATTCGTGGG 60.059 43.478 0.00 0.00 0.00 4.61
3590 6652 4.140518 TCGTGTTTGATGAAATTCGTGG 57.859 40.909 0.00 0.00 0.00 4.94
3591 6653 4.554586 CCATCGTGTTTGATGAAATTCGTG 59.445 41.667 5.35 3.85 46.98 4.35
3592 6654 4.215399 ACCATCGTGTTTGATGAAATTCGT 59.785 37.500 5.35 0.00 46.98 3.85
3593 6655 4.722194 ACCATCGTGTTTGATGAAATTCG 58.278 39.130 5.35 0.01 46.98 3.34
3594 6656 9.781834 TTAATACCATCGTGTTTGATGAAATTC 57.218 29.630 5.35 0.00 46.98 2.17
3595 6657 9.567848 GTTAATACCATCGTGTTTGATGAAATT 57.432 29.630 5.35 6.92 46.98 1.82
3596 6658 8.956426 AGTTAATACCATCGTGTTTGATGAAAT 58.044 29.630 5.35 0.00 46.98 2.17
3597 6659 8.330466 AGTTAATACCATCGTGTTTGATGAAA 57.670 30.769 5.35 0.00 46.98 2.69
3598 6660 7.915293 AGTTAATACCATCGTGTTTGATGAA 57.085 32.000 5.35 0.00 46.98 2.57
3599 6661 9.438228 TTTAGTTAATACCATCGTGTTTGATGA 57.562 29.630 5.35 0.00 46.98 2.92
3606 6668 9.661563 TCTGAATTTTAGTTAATACCATCGTGT 57.338 29.630 0.00 0.00 0.00 4.49
3607 6669 9.916397 GTCTGAATTTTAGTTAATACCATCGTG 57.084 33.333 0.00 0.00 0.00 4.35
3608 6670 8.814235 CGTCTGAATTTTAGTTAATACCATCGT 58.186 33.333 0.00 0.00 0.00 3.73
3609 6671 8.814235 ACGTCTGAATTTTAGTTAATACCATCG 58.186 33.333 0.00 0.00 0.00 3.84
3610 6672 9.916397 CACGTCTGAATTTTAGTTAATACCATC 57.084 33.333 0.00 0.00 0.00 3.51
3611 6673 9.444600 ACACGTCTGAATTTTAGTTAATACCAT 57.555 29.630 0.00 0.00 0.00 3.55
3612 6674 8.836268 ACACGTCTGAATTTTAGTTAATACCA 57.164 30.769 0.00 0.00 0.00 3.25
3624 6686 9.924650 GTCCCTTATATATACACGTCTGAATTT 57.075 33.333 0.00 0.00 0.00 1.82
3625 6687 9.085645 TGTCCCTTATATATACACGTCTGAATT 57.914 33.333 0.00 0.00 0.00 2.17
3626 6688 8.645814 TGTCCCTTATATATACACGTCTGAAT 57.354 34.615 0.00 0.00 0.00 2.57
3627 6689 7.722728 ACTGTCCCTTATATATACACGTCTGAA 59.277 37.037 0.00 0.00 0.00 3.02
3628 6690 7.229308 ACTGTCCCTTATATATACACGTCTGA 58.771 38.462 0.00 0.00 0.00 3.27
3629 6691 7.450124 ACTGTCCCTTATATATACACGTCTG 57.550 40.000 0.00 0.00 0.00 3.51
3630 6692 9.750783 AATACTGTCCCTTATATATACACGTCT 57.249 33.333 0.00 0.00 0.00 4.18
3632 6694 8.964772 GGAATACTGTCCCTTATATATACACGT 58.035 37.037 0.00 0.00 0.00 4.49
3633 6695 8.963725 TGGAATACTGTCCCTTATATATACACG 58.036 37.037 0.00 0.00 36.80 4.49
3637 6699 9.363401 CGGATGGAATACTGTCCCTTATATATA 57.637 37.037 0.00 0.00 36.80 0.86
3638 6700 7.844779 ACGGATGGAATACTGTCCCTTATATAT 59.155 37.037 0.00 0.00 36.80 0.86
3639 6701 7.186972 ACGGATGGAATACTGTCCCTTATATA 58.813 38.462 0.00 0.00 36.80 0.86
3640 6702 6.023603 ACGGATGGAATACTGTCCCTTATAT 58.976 40.000 0.00 0.00 36.80 0.86
3641 6703 5.399991 ACGGATGGAATACTGTCCCTTATA 58.600 41.667 0.00 0.00 36.80 0.98
3642 6704 4.232091 ACGGATGGAATACTGTCCCTTAT 58.768 43.478 0.00 0.00 36.80 1.73
3643 6705 3.649843 ACGGATGGAATACTGTCCCTTA 58.350 45.455 0.00 0.00 36.80 2.69
3644 6706 2.478292 ACGGATGGAATACTGTCCCTT 58.522 47.619 0.00 0.00 36.80 3.95
3645 6707 2.176247 ACGGATGGAATACTGTCCCT 57.824 50.000 0.00 0.00 36.80 4.20
3646 6708 3.277142 AAACGGATGGAATACTGTCCC 57.723 47.619 0.00 0.00 36.80 4.46
3647 6709 5.425630 AGTTAAACGGATGGAATACTGTCC 58.574 41.667 0.00 0.00 38.27 4.02
3648 6710 6.980051 AAGTTAAACGGATGGAATACTGTC 57.020 37.500 0.00 0.00 0.00 3.51
3649 6711 8.724229 GTTTAAGTTAAACGGATGGAATACTGT 58.276 33.333 19.80 0.00 38.69 3.55
3681 6743 4.479619 CACGCGTACTAGGTCTAGTTTTT 58.520 43.478 13.44 0.00 43.35 1.94
3682 6744 3.119708 CCACGCGTACTAGGTCTAGTTTT 60.120 47.826 13.44 0.00 43.35 2.43
3683 6745 2.421424 CCACGCGTACTAGGTCTAGTTT 59.579 50.000 13.44 0.00 43.35 2.66
3684 6746 2.012673 CCACGCGTACTAGGTCTAGTT 58.987 52.381 13.44 1.78 43.35 2.24
3685 6747 2.997696 GACCACGCGTACTAGGTCTAGT 60.998 54.545 29.26 14.19 45.46 2.57
3686 6748 1.596727 GACCACGCGTACTAGGTCTAG 59.403 57.143 29.26 8.73 45.46 2.43
3687 6749 1.656652 GACCACGCGTACTAGGTCTA 58.343 55.000 29.26 0.00 45.46 2.59
3688 6750 2.475666 GACCACGCGTACTAGGTCT 58.524 57.895 29.26 7.54 45.46 3.85
3690 6752 0.242017 GTTGACCACGCGTACTAGGT 59.758 55.000 17.85 17.85 37.00 3.08
3691 6753 0.457337 GGTTGACCACGCGTACTAGG 60.457 60.000 13.44 12.25 35.64 3.02
3692 6754 0.524862 AGGTTGACCACGCGTACTAG 59.475 55.000 13.44 3.52 38.89 2.57
3693 6755 0.241749 CAGGTTGACCACGCGTACTA 59.758 55.000 13.44 0.49 38.89 1.82
3694 6756 1.006571 CAGGTTGACCACGCGTACT 60.007 57.895 13.44 0.00 38.89 2.73
3695 6757 2.025418 CCAGGTTGACCACGCGTAC 61.025 63.158 13.44 5.88 38.89 3.67
3696 6758 2.340809 CCAGGTTGACCACGCGTA 59.659 61.111 13.44 0.00 38.89 4.42
3699 6761 4.947147 TGGCCAGGTTGACCACGC 62.947 66.667 0.00 3.17 38.89 5.34
3700 6762 2.669569 CTGGCCAGGTTGACCACG 60.670 66.667 26.14 0.00 38.89 4.94
3701 6763 2.985847 GCTGGCCAGGTTGACCAC 60.986 66.667 33.46 10.92 38.89 4.16
3702 6764 4.641645 CGCTGGCCAGGTTGACCA 62.642 66.667 33.46 0.00 38.89 4.02
3715 6777 4.415332 ACGACTACGGTGCCGCTG 62.415 66.667 10.87 6.25 44.19 5.18
3716 6778 4.112341 GACGACTACGGTGCCGCT 62.112 66.667 10.87 1.06 44.19 5.52
3718 6780 4.487412 GGGACGACTACGGTGCCG 62.487 72.222 9.29 9.29 44.46 5.69
3719 6781 3.061260 GAGGGACGACTACGGTGCC 62.061 68.421 0.00 0.00 44.46 5.01
3720 6782 2.488820 GAGGGACGACTACGGTGC 59.511 66.667 0.00 0.00 44.46 5.01
3721 6783 1.975363 GACGAGGGACGACTACGGTG 61.975 65.000 0.00 0.00 45.77 4.94
3722 6784 1.743252 GACGAGGGACGACTACGGT 60.743 63.158 0.00 0.00 45.77 4.83
3723 6785 2.806856 CGACGAGGGACGACTACGG 61.807 68.421 0.00 0.00 45.77 4.02
3724 6786 1.354337 TTCGACGAGGGACGACTACG 61.354 60.000 0.00 0.00 45.77 3.51
3725 6787 0.373024 CTTCGACGAGGGACGACTAC 59.627 60.000 0.00 0.00 45.77 2.73
3726 6788 0.036952 ACTTCGACGAGGGACGACTA 60.037 55.000 11.93 0.00 45.77 2.59
3727 6789 1.302351 ACTTCGACGAGGGACGACT 60.302 57.895 11.93 0.00 45.77 4.18
3728 6790 1.154263 CACTTCGACGAGGGACGAC 60.154 63.158 11.93 0.00 45.77 4.34
3729 6791 2.974489 GCACTTCGACGAGGGACGA 61.974 63.158 11.93 0.00 45.77 4.20
3731 6793 1.153997 GAGCACTTCGACGAGGGAC 60.154 63.158 11.93 2.85 0.00 4.46
3732 6794 2.341101 GGAGCACTTCGACGAGGGA 61.341 63.158 11.93 0.00 0.00 4.20
3733 6795 2.182030 GGAGCACTTCGACGAGGG 59.818 66.667 11.93 5.26 0.00 4.30
3734 6796 2.182030 GGGAGCACTTCGACGAGG 59.818 66.667 5.30 5.30 0.00 4.63
3735 6797 1.137825 GAGGGAGCACTTCGACGAG 59.862 63.158 0.00 0.00 0.00 4.18
3736 6798 2.341101 GGAGGGAGCACTTCGACGA 61.341 63.158 0.00 0.00 0.00 4.20
3737 6799 2.182030 GGAGGGAGCACTTCGACG 59.818 66.667 0.00 0.00 0.00 5.12
3738 6800 1.216710 CTGGAGGGAGCACTTCGAC 59.783 63.158 0.00 0.00 0.00 4.20
3739 6801 2.650116 GCTGGAGGGAGCACTTCGA 61.650 63.158 0.00 0.00 38.95 3.71
3740 6802 2.125350 GCTGGAGGGAGCACTTCG 60.125 66.667 0.00 0.00 38.95 3.79
3741 6803 2.125350 CGCTGGAGGGAGCACTTC 60.125 66.667 0.00 0.00 39.07 3.01
3742 6804 3.710722 CCGCTGGAGGGAGCACTT 61.711 66.667 0.00 0.00 39.07 3.16
3760 6822 4.760047 CCTCACCGTGCCCTTCCG 62.760 72.222 0.00 0.00 0.00 4.30
3761 6823 3.316573 CTCCTCACCGTGCCCTTCC 62.317 68.421 0.00 0.00 0.00 3.46
3762 6824 2.266055 CTCCTCACCGTGCCCTTC 59.734 66.667 0.00 0.00 0.00 3.46
3763 6825 2.526873 ACTCCTCACCGTGCCCTT 60.527 61.111 0.00 0.00 0.00 3.95
3764 6826 2.997897 GACTCCTCACCGTGCCCT 60.998 66.667 0.00 0.00 0.00 5.19
3765 6827 2.185310 AATGACTCCTCACCGTGCCC 62.185 60.000 0.00 0.00 0.00 5.36
3766 6828 0.741221 GAATGACTCCTCACCGTGCC 60.741 60.000 0.00 0.00 0.00 5.01
3767 6829 0.247736 AGAATGACTCCTCACCGTGC 59.752 55.000 0.00 0.00 0.00 5.34
3768 6830 2.001812 CAGAATGACTCCTCACCGTG 57.998 55.000 0.00 0.00 39.69 4.94
3769 6831 0.247736 GCAGAATGACTCCTCACCGT 59.752 55.000 0.00 0.00 39.69 4.83
3770 6832 0.534412 AGCAGAATGACTCCTCACCG 59.466 55.000 0.00 0.00 39.69 4.94
3771 6833 2.235898 AGAAGCAGAATGACTCCTCACC 59.764 50.000 0.00 0.00 39.69 4.02
3772 6834 3.520569 GAGAAGCAGAATGACTCCTCAC 58.479 50.000 0.00 0.00 39.69 3.51
3773 6835 2.499289 GGAGAAGCAGAATGACTCCTCA 59.501 50.000 0.00 0.00 43.60 3.86
3774 6836 3.177997 GGAGAAGCAGAATGACTCCTC 57.822 52.381 0.00 0.00 43.60 3.71
3776 6838 2.903798 CAGGAGAAGCAGAATGACTCC 58.096 52.381 0.00 0.00 45.57 3.85
3777 6839 2.093553 AGCAGGAGAAGCAGAATGACTC 60.094 50.000 0.00 0.00 39.69 3.36
3778 6840 1.907936 AGCAGGAGAAGCAGAATGACT 59.092 47.619 0.00 0.00 39.69 3.41
3779 6841 2.278854 GAGCAGGAGAAGCAGAATGAC 58.721 52.381 0.00 0.00 39.69 3.06
3780 6842 1.209019 GGAGCAGGAGAAGCAGAATGA 59.791 52.381 0.00 0.00 39.69 2.57
3781 6843 1.666054 GGAGCAGGAGAAGCAGAATG 58.334 55.000 0.00 0.00 40.87 2.67
3782 6844 0.177604 CGGAGCAGGAGAAGCAGAAT 59.822 55.000 0.00 0.00 0.00 2.40
3783 6845 1.188219 ACGGAGCAGGAGAAGCAGAA 61.188 55.000 0.00 0.00 0.00 3.02
3784 6846 1.607756 ACGGAGCAGGAGAAGCAGA 60.608 57.895 0.00 0.00 0.00 4.26
3785 6847 1.447489 CACGGAGCAGGAGAAGCAG 60.447 63.158 0.00 0.00 0.00 4.24
3786 6848 2.659016 CACGGAGCAGGAGAAGCA 59.341 61.111 0.00 0.00 0.00 3.91
3787 6849 2.817396 GCACGGAGCAGGAGAAGC 60.817 66.667 0.00 0.00 44.79 3.86
3788 6850 2.507992 CGCACGGAGCAGGAGAAG 60.508 66.667 3.06 0.00 46.13 2.85
3789 6851 4.069232 CCGCACGGAGCAGGAGAA 62.069 66.667 2.01 0.00 46.13 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.