Multiple sequence alignment - TraesCS2D01G177800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G177800 chr2D 100.000 2375 0 0 1 2375 121232284 121229910 0.000000e+00 4386.0
1 TraesCS2D01G177800 chr2D 84.047 257 33 6 1 253 579000212 579000464 8.480000e-60 241.0
2 TraesCS2D01G177800 chr2A 91.573 1341 60 17 453 1775 125385672 125384367 0.000000e+00 1801.0
3 TraesCS2D01G177800 chr2A 84.112 642 47 12 1785 2375 125384314 125383677 9.530000e-159 569.0
4 TraesCS2D01G177800 chr2A 77.404 416 73 19 1852 2252 511601843 511602252 6.600000e-56 228.0
5 TraesCS2D01G177800 chr2A 82.353 204 28 5 2005 2207 151248645 151248841 1.130000e-38 171.0
6 TraesCS2D01G177800 chr2B 91.167 600 37 8 1787 2375 174653941 174653347 0.000000e+00 800.0
7 TraesCS2D01G177800 chr2B 94.475 362 12 2 1086 1441 174656229 174655870 3.450000e-153 551.0
8 TraesCS2D01G177800 chr2B 95.370 216 5 3 1437 1652 174654445 174654235 2.920000e-89 339.0
9 TraesCS2D01G177800 chr2B 78.830 359 67 7 1819 2170 449106026 449106382 1.420000e-57 233.0
10 TraesCS2D01G177800 chr2B 87.313 134 17 0 1651 1784 174654121 174653988 1.140000e-33 154.0
11 TraesCS2D01G177800 chr1A 87.747 253 30 1 2 253 403378108 403378360 6.420000e-76 294.0
12 TraesCS2D01G177800 chr1A 84.496 258 38 2 1 257 290958847 290959103 1.090000e-63 254.0
13 TraesCS2D01G177800 chr5D 87.109 256 32 1 1 255 478872844 478873099 2.990000e-74 289.0
14 TraesCS2D01G177800 chr5D 87.168 226 27 2 6 230 473066513 473066289 3.030000e-64 255.0
15 TraesCS2D01G177800 chr5D 87.500 64 6 2 1896 1957 420955530 420955467 3.270000e-09 73.1
16 TraesCS2D01G177800 chr1D 78.271 451 73 19 1850 2288 42824125 42824562 1.400000e-67 267.0
17 TraesCS2D01G177800 chr1D 74.904 522 78 35 1821 2310 42384248 42383748 3.120000e-44 189.0
18 TraesCS2D01G177800 chr4D 85.214 257 35 3 1 255 70338693 70338438 6.510000e-66 261.0
19 TraesCS2D01G177800 chr7D 86.325 234 29 3 23 255 238940291 238940522 3.920000e-63 252.0
20 TraesCS2D01G177800 chr3A 84.496 258 26 9 3 257 373323207 373322961 2.360000e-60 243.0
21 TraesCS2D01G177800 chr3B 83.784 259 32 8 1 255 687484028 687483776 1.100000e-58 237.0
22 TraesCS2D01G177800 chr3B 79.570 186 25 12 2194 2373 133374764 133374586 1.150000e-23 121.0
23 TraesCS2D01G177800 chr1B 78.601 243 35 17 2138 2369 365458139 365457903 6.840000e-31 145.0
24 TraesCS2D01G177800 chr1B 82.000 150 19 8 2225 2369 365458153 365458007 1.150000e-23 121.0
25 TraesCS2D01G177800 chr6D 86.508 126 13 4 2246 2369 389611738 389611615 4.120000e-28 135.0
26 TraesCS2D01G177800 chr7A 74.221 353 63 20 2025 2371 708368220 708367890 3.210000e-24 122.0
27 TraesCS2D01G177800 chr7A 91.525 59 5 0 1893 1951 708368331 708368273 5.440000e-12 82.4
28 TraesCS2D01G177800 chr6A 77.333 225 36 15 2149 2369 133636664 133636877 4.150000e-23 119.0
29 TraesCS2D01G177800 chr5B 79.235 183 27 11 2195 2372 512946956 512946780 1.490000e-22 117.0
30 TraesCS2D01G177800 chr5B 76.812 207 36 11 2169 2369 542204755 542204955 3.230000e-19 106.0
31 TraesCS2D01G177800 chr3D 78.462 195 30 11 2184 2372 305315748 305315936 1.490000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G177800 chr2D 121229910 121232284 2374 True 4386 4386 100.00000 1 2375 1 chr2D.!!$R1 2374
1 TraesCS2D01G177800 chr2A 125383677 125385672 1995 True 1185 1801 87.84250 453 2375 2 chr2A.!!$R1 1922
2 TraesCS2D01G177800 chr2B 174653347 174656229 2882 True 461 800 92.08125 1086 2375 4 chr2B.!!$R1 1289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 906 0.030773 GCATCGTCGACCTGCATAGA 59.969 55.0 24.95 10.4 35.96 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 3277 0.740737 CTTAAAGGGCCAGCAATCGG 59.259 55.0 6.18 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.857822 ATTACTTTAGTTGAGTTCGTGCC 57.142 39.130 0.00 0.00 0.00 5.01
23 24 2.132762 ACTTTAGTTGAGTTCGTGCCG 58.867 47.619 0.00 0.00 0.00 5.69
24 25 2.223876 ACTTTAGTTGAGTTCGTGCCGA 60.224 45.455 0.00 0.00 0.00 5.54
25 26 2.512485 TTAGTTGAGTTCGTGCCGAA 57.488 45.000 6.01 6.01 43.75 4.30
40 41 1.931551 CGAACCACGGCGAATATGG 59.068 57.895 16.62 13.93 39.57 2.74
41 42 1.495584 CGAACCACGGCGAATATGGG 61.496 60.000 16.62 7.40 37.86 4.00
42 43 1.782028 GAACCACGGCGAATATGGGC 61.782 60.000 16.62 3.74 37.86 5.36
43 44 2.978010 CCACGGCGAATATGGGCC 60.978 66.667 16.62 0.00 45.95 5.80
47 48 4.397348 GGCGAATATGGGCCGATT 57.603 55.556 5.24 0.02 39.93 3.34
48 49 2.641197 GGCGAATATGGGCCGATTT 58.359 52.632 5.24 0.00 39.93 2.17
49 50 0.240945 GGCGAATATGGGCCGATTTG 59.759 55.000 5.24 11.99 39.93 2.32
50 51 0.951558 GCGAATATGGGCCGATTTGT 59.048 50.000 5.24 0.00 0.00 2.83
51 52 1.334960 GCGAATATGGGCCGATTTGTG 60.335 52.381 5.24 0.00 0.00 3.33
52 53 1.334960 CGAATATGGGCCGATTTGTGC 60.335 52.381 5.24 0.00 0.00 4.57
59 60 6.843936 ATATGGGCCGATTTGTGCCAATATC 61.844 44.000 5.24 0.00 46.72 1.63
60 61 2.036556 GCCGATTTGTGCCAATATCG 57.963 50.000 16.17 16.17 39.52 2.92
62 63 2.686558 CGATTTGTGCCAATATCGGG 57.313 50.000 15.76 0.00 36.99 5.14
68 69 4.397348 GCCAATATCGGGCCGATT 57.603 55.556 42.46 26.45 44.59 3.34
69 70 2.641197 GCCAATATCGGGCCGATTT 58.359 52.632 42.46 32.88 44.59 2.17
70 71 1.816074 GCCAATATCGGGCCGATTTA 58.184 50.000 42.46 28.24 44.59 1.40
71 72 2.365582 GCCAATATCGGGCCGATTTAT 58.634 47.619 42.46 29.13 44.59 1.40
72 73 2.354821 GCCAATATCGGGCCGATTTATC 59.645 50.000 42.46 24.48 44.59 1.75
73 74 2.607635 CCAATATCGGGCCGATTTATCG 59.392 50.000 42.46 25.85 44.59 2.92
74 75 1.935933 ATATCGGGCCGATTTATCGC 58.064 50.000 42.46 2.95 44.59 4.58
75 76 0.108520 TATCGGGCCGATTTATCGCC 60.109 55.000 42.46 10.75 44.59 5.54
76 77 3.734682 TATCGGGCCGATTTATCGCCG 62.735 57.143 42.46 18.76 44.59 6.46
84 85 2.916111 CGATTTATCGCCGAAAATGGG 58.084 47.619 10.48 2.19 43.84 4.00
85 86 2.289547 CGATTTATCGCCGAAAATGGGT 59.710 45.455 10.48 0.00 43.84 4.51
86 87 3.606153 CGATTTATCGCCGAAAATGGGTC 60.606 47.826 10.48 0.29 43.84 4.46
87 88 1.292061 TTATCGCCGAAAATGGGTCG 58.708 50.000 0.00 0.00 38.24 4.79
88 89 0.460722 TATCGCCGAAAATGGGTCGA 59.539 50.000 0.00 0.00 41.02 4.20
89 90 0.391927 ATCGCCGAAAATGGGTCGAA 60.392 50.000 0.00 0.00 41.02 3.71
90 91 0.603172 TCGCCGAAAATGGGTCGAAA 60.603 50.000 0.00 0.00 41.02 3.46
91 92 0.238817 CGCCGAAAATGGGTCGAAAA 59.761 50.000 0.00 0.00 41.02 2.29
92 93 1.727857 CGCCGAAAATGGGTCGAAAAG 60.728 52.381 0.00 0.00 41.02 2.27
93 94 1.977188 CCGAAAATGGGTCGAAAAGC 58.023 50.000 0.00 0.00 41.02 3.51
94 95 1.602191 CGAAAATGGGTCGAAAAGCG 58.398 50.000 0.00 0.00 41.02 4.68
95 96 1.727857 CGAAAATGGGTCGAAAAGCGG 60.728 52.381 0.00 0.00 41.02 5.52
96 97 1.268625 GAAAATGGGTCGAAAAGCGGT 59.731 47.619 0.00 0.00 41.33 5.68
97 98 0.879090 AAATGGGTCGAAAAGCGGTC 59.121 50.000 0.00 0.00 41.33 4.79
98 99 0.250553 AATGGGTCGAAAAGCGGTCA 60.251 50.000 0.00 0.00 41.33 4.02
99 100 0.953960 ATGGGTCGAAAAGCGGTCAC 60.954 55.000 0.00 0.00 41.33 3.67
100 101 1.595929 GGGTCGAAAAGCGGTCACA 60.596 57.895 0.00 0.00 41.33 3.58
101 102 0.953960 GGGTCGAAAAGCGGTCACAT 60.954 55.000 0.00 0.00 41.33 3.21
102 103 0.872388 GGTCGAAAAGCGGTCACATT 59.128 50.000 0.00 0.00 41.33 2.71
103 104 1.265905 GGTCGAAAAGCGGTCACATTT 59.734 47.619 0.00 0.00 41.33 2.32
104 105 2.287368 GGTCGAAAAGCGGTCACATTTT 60.287 45.455 0.00 0.00 41.33 1.82
105 106 3.368495 GTCGAAAAGCGGTCACATTTTT 58.632 40.909 0.00 0.00 41.33 1.94
106 107 3.179599 GTCGAAAAGCGGTCACATTTTTG 59.820 43.478 0.00 0.00 41.33 2.44
107 108 2.097444 CGAAAAGCGGTCACATTTTTGC 60.097 45.455 0.00 0.00 36.03 3.68
108 109 2.593346 AAAGCGGTCACATTTTTGCA 57.407 40.000 0.00 0.00 0.00 4.08
109 110 2.593346 AAGCGGTCACATTTTTGCAA 57.407 40.000 0.00 0.00 0.00 4.08
110 111 2.593346 AGCGGTCACATTTTTGCAAA 57.407 40.000 8.05 8.05 0.00 3.68
111 112 2.898705 AGCGGTCACATTTTTGCAAAA 58.101 38.095 20.46 20.46 0.00 2.44
112 113 3.265791 AGCGGTCACATTTTTGCAAAAA 58.734 36.364 32.91 32.91 41.59 1.94
136 137 4.742201 CGATATCGGCGCCTGGGG 62.742 72.222 26.68 9.07 35.37 4.96
148 149 4.431524 CTGGGGCCACCTAGGGGA 62.432 72.222 14.43 0.00 41.38 4.81
149 150 4.431524 TGGGGCCACCTAGGGGAG 62.432 72.222 14.43 3.56 41.11 4.30
174 175 3.083386 GGAACCCAATCGACCCCA 58.917 61.111 0.00 0.00 0.00 4.96
175 176 1.381076 GGAACCCAATCGACCCCAA 59.619 57.895 0.00 0.00 0.00 4.12
176 177 0.963856 GGAACCCAATCGACCCCAAC 60.964 60.000 0.00 0.00 0.00 3.77
177 178 1.302993 AACCCAATCGACCCCAACG 60.303 57.895 0.00 0.00 0.00 4.10
178 179 3.131478 CCCAATCGACCCCAACGC 61.131 66.667 0.00 0.00 0.00 4.84
179 180 2.046314 CCAATCGACCCCAACGCT 60.046 61.111 0.00 0.00 0.00 5.07
180 181 2.398554 CCAATCGACCCCAACGCTG 61.399 63.158 0.00 0.00 0.00 5.18
181 182 1.671054 CAATCGACCCCAACGCTGT 60.671 57.895 0.00 0.00 0.00 4.40
182 183 1.072505 AATCGACCCCAACGCTGTT 59.927 52.632 0.00 0.00 0.00 3.16
183 184 0.536460 AATCGACCCCAACGCTGTTT 60.536 50.000 0.00 0.00 0.00 2.83
184 185 0.536460 ATCGACCCCAACGCTGTTTT 60.536 50.000 0.00 0.00 0.00 2.43
185 186 0.748729 TCGACCCCAACGCTGTTTTT 60.749 50.000 0.00 0.00 0.00 1.94
186 187 0.945813 CGACCCCAACGCTGTTTTTA 59.054 50.000 0.00 0.00 0.00 1.52
187 188 1.069500 CGACCCCAACGCTGTTTTTAG 60.069 52.381 0.00 0.00 0.00 1.85
188 189 0.671796 ACCCCAACGCTGTTTTTAGC 59.328 50.000 0.00 0.00 40.29 3.09
194 195 2.504026 GCTGTTTTTAGCGCCGGC 60.504 61.111 19.07 19.07 40.37 6.13
214 215 2.267961 GTCCCCAGACGGCGATTT 59.732 61.111 16.62 0.00 32.18 2.17
215 216 1.376812 GTCCCCAGACGGCGATTTT 60.377 57.895 16.62 0.00 32.18 1.82
216 217 0.958876 GTCCCCAGACGGCGATTTTT 60.959 55.000 16.62 0.00 32.18 1.94
217 218 0.614294 TCCCCAGACGGCGATTTTTA 59.386 50.000 16.62 0.00 0.00 1.52
218 219 1.003349 TCCCCAGACGGCGATTTTTAA 59.997 47.619 16.62 0.00 0.00 1.52
219 220 1.400494 CCCCAGACGGCGATTTTTAAG 59.600 52.381 16.62 0.00 0.00 1.85
220 221 1.202143 CCCAGACGGCGATTTTTAAGC 60.202 52.381 16.62 0.00 0.00 3.09
221 222 1.202143 CCAGACGGCGATTTTTAAGCC 60.202 52.381 16.62 0.00 46.88 4.35
227 228 1.330829 GGCGATTTTTAAGCCTCCTCG 59.669 52.381 0.00 0.00 46.83 4.63
228 229 1.330829 GCGATTTTTAAGCCTCCTCGG 59.669 52.381 0.00 0.00 0.00 4.63
229 230 1.940613 CGATTTTTAAGCCTCCTCGGG 59.059 52.381 0.00 0.00 0.00 5.14
230 231 2.298610 GATTTTTAAGCCTCCTCGGGG 58.701 52.381 0.00 0.00 0.00 5.73
231 232 0.330267 TTTTTAAGCCTCCTCGGGGG 59.670 55.000 0.00 0.00 0.00 5.40
251 252 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
252 253 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
253 254 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
254 255 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
255 256 0.749649 ACGGCTGGAGATGCTCTAAG 59.250 55.000 0.00 0.00 0.00 2.18
256 257 1.035923 CGGCTGGAGATGCTCTAAGA 58.964 55.000 0.00 0.00 0.00 2.10
257 258 1.269517 CGGCTGGAGATGCTCTAAGAC 60.270 57.143 0.00 0.00 0.00 3.01
258 259 2.038659 GGCTGGAGATGCTCTAAGACT 58.961 52.381 0.00 0.00 0.00 3.24
259 260 2.433970 GGCTGGAGATGCTCTAAGACTT 59.566 50.000 0.00 0.00 0.00 3.01
260 261 3.639094 GGCTGGAGATGCTCTAAGACTTA 59.361 47.826 0.00 0.00 0.00 2.24
261 262 4.100189 GGCTGGAGATGCTCTAAGACTTAA 59.900 45.833 0.00 0.00 0.00 1.85
262 263 5.047188 GCTGGAGATGCTCTAAGACTTAAC 58.953 45.833 0.00 0.00 0.00 2.01
263 264 5.163457 GCTGGAGATGCTCTAAGACTTAACT 60.163 44.000 0.00 0.00 0.00 2.24
264 265 6.458232 TGGAGATGCTCTAAGACTTAACTC 57.542 41.667 0.00 0.00 0.00 3.01
265 266 5.361285 TGGAGATGCTCTAAGACTTAACTCC 59.639 44.000 0.00 0.00 40.06 3.85
266 267 5.361285 GGAGATGCTCTAAGACTTAACTCCA 59.639 44.000 0.00 5.71 39.62 3.86
267 268 6.215495 AGATGCTCTAAGACTTAACTCCAC 57.785 41.667 0.00 0.00 0.00 4.02
268 269 5.955355 AGATGCTCTAAGACTTAACTCCACT 59.045 40.000 0.00 0.00 0.00 4.00
269 270 7.120051 AGATGCTCTAAGACTTAACTCCACTA 58.880 38.462 0.00 0.00 0.00 2.74
270 271 6.761099 TGCTCTAAGACTTAACTCCACTAG 57.239 41.667 0.00 0.00 0.00 2.57
271 272 6.246919 TGCTCTAAGACTTAACTCCACTAGT 58.753 40.000 0.00 0.00 41.49 2.57
272 273 6.374894 TGCTCTAAGACTTAACTCCACTAGTC 59.625 42.308 0.00 0.00 37.50 2.59
273 274 6.600427 GCTCTAAGACTTAACTCCACTAGTCT 59.400 42.308 0.00 0.00 46.84 3.24
277 278 6.980416 AGACTTAACTCCACTAGTCTTTGT 57.020 37.500 0.00 0.00 43.49 2.83
278 279 7.362802 AGACTTAACTCCACTAGTCTTTGTT 57.637 36.000 0.00 0.00 43.49 2.83
279 280 7.210873 AGACTTAACTCCACTAGTCTTTGTTG 58.789 38.462 0.00 0.00 43.49 3.33
280 281 6.885922 ACTTAACTCCACTAGTCTTTGTTGT 58.114 36.000 0.00 0.00 37.50 3.32
281 282 7.336396 ACTTAACTCCACTAGTCTTTGTTGTT 58.664 34.615 0.00 0.00 37.50 2.83
282 283 7.494952 ACTTAACTCCACTAGTCTTTGTTGTTC 59.505 37.037 0.00 0.00 37.50 3.18
283 284 5.615925 ACTCCACTAGTCTTTGTTGTTCT 57.384 39.130 0.00 0.00 30.33 3.01
284 285 5.602628 ACTCCACTAGTCTTTGTTGTTCTC 58.397 41.667 0.00 0.00 30.33 2.87
285 286 4.617959 TCCACTAGTCTTTGTTGTTCTCG 58.382 43.478 0.00 0.00 0.00 4.04
286 287 3.184581 CCACTAGTCTTTGTTGTTCTCGC 59.815 47.826 0.00 0.00 0.00 5.03
287 288 3.050619 ACTAGTCTTTGTTGTTCTCGCG 58.949 45.455 0.00 0.00 0.00 5.87
288 289 1.935933 AGTCTTTGTTGTTCTCGCGT 58.064 45.000 5.77 0.00 0.00 6.01
289 290 2.277084 AGTCTTTGTTGTTCTCGCGTT 58.723 42.857 5.77 0.00 0.00 4.84
290 291 2.030457 AGTCTTTGTTGTTCTCGCGTTG 59.970 45.455 5.77 0.00 0.00 4.10
291 292 2.029970 GTCTTTGTTGTTCTCGCGTTGA 59.970 45.455 5.77 2.87 0.00 3.18
292 293 2.284150 TCTTTGTTGTTCTCGCGTTGAG 59.716 45.455 5.77 0.00 46.72 3.02
293 294 1.647346 TTGTTGTTCTCGCGTTGAGT 58.353 45.000 5.77 0.00 45.46 3.41
294 295 1.205657 TGTTGTTCTCGCGTTGAGTC 58.794 50.000 5.77 4.46 45.46 3.36
295 296 1.205657 GTTGTTCTCGCGTTGAGTCA 58.794 50.000 5.77 6.83 45.46 3.41
296 297 1.591158 GTTGTTCTCGCGTTGAGTCAA 59.409 47.619 5.77 0.08 45.46 3.18
297 298 1.487482 TGTTCTCGCGTTGAGTCAAG 58.513 50.000 5.62 2.03 45.46 3.02
298 299 1.202371 TGTTCTCGCGTTGAGTCAAGT 60.202 47.619 5.62 0.00 45.46 3.16
299 300 2.033675 TGTTCTCGCGTTGAGTCAAGTA 59.966 45.455 5.62 0.00 45.46 2.24
300 301 3.243336 GTTCTCGCGTTGAGTCAAGTAT 58.757 45.455 5.62 0.00 45.46 2.12
301 302 3.570926 TCTCGCGTTGAGTCAAGTATT 57.429 42.857 5.62 0.00 45.46 1.89
302 303 3.909430 TCTCGCGTTGAGTCAAGTATTT 58.091 40.909 5.62 0.00 45.46 1.40
303 304 5.050644 TCTCGCGTTGAGTCAAGTATTTA 57.949 39.130 5.62 0.00 45.46 1.40
304 305 5.647589 TCTCGCGTTGAGTCAAGTATTTAT 58.352 37.500 5.62 0.00 45.46 1.40
305 306 5.515270 TCTCGCGTTGAGTCAAGTATTTATG 59.485 40.000 5.62 0.00 45.46 1.90
306 307 4.032445 TCGCGTTGAGTCAAGTATTTATGC 59.968 41.667 5.62 0.00 0.00 3.14
307 308 4.032900 CGCGTTGAGTCAAGTATTTATGCT 59.967 41.667 5.62 0.00 0.00 3.79
308 309 5.231357 CGCGTTGAGTCAAGTATTTATGCTA 59.769 40.000 5.62 0.00 0.00 3.49
309 310 6.411652 GCGTTGAGTCAAGTATTTATGCTAC 58.588 40.000 5.62 0.00 0.00 3.58
310 311 6.509677 GCGTTGAGTCAAGTATTTATGCTACC 60.510 42.308 5.62 0.00 0.00 3.18
311 312 6.533723 CGTTGAGTCAAGTATTTATGCTACCA 59.466 38.462 5.62 0.00 0.00 3.25
312 313 7.064134 CGTTGAGTCAAGTATTTATGCTACCAA 59.936 37.037 5.62 0.00 0.00 3.67
313 314 8.726988 GTTGAGTCAAGTATTTATGCTACCAAA 58.273 33.333 5.62 0.00 0.00 3.28
314 315 9.461312 TTGAGTCAAGTATTTATGCTACCAAAT 57.539 29.630 0.08 0.00 0.00 2.32
315 316 8.892723 TGAGTCAAGTATTTATGCTACCAAATG 58.107 33.333 0.00 0.00 0.00 2.32
316 317 8.807948 AGTCAAGTATTTATGCTACCAAATGT 57.192 30.769 0.00 0.00 0.00 2.71
317 318 8.893727 AGTCAAGTATTTATGCTACCAAATGTC 58.106 33.333 0.00 0.00 0.00 3.06
318 319 8.893727 GTCAAGTATTTATGCTACCAAATGTCT 58.106 33.333 0.00 0.00 0.00 3.41
324 325 7.534085 TTTATGCTACCAAATGTCTAACTCG 57.466 36.000 0.00 0.00 0.00 4.18
325 326 4.794278 TGCTACCAAATGTCTAACTCGA 57.206 40.909 0.00 0.00 0.00 4.04
326 327 5.339008 TGCTACCAAATGTCTAACTCGAT 57.661 39.130 0.00 0.00 0.00 3.59
327 328 6.459670 TGCTACCAAATGTCTAACTCGATA 57.540 37.500 0.00 0.00 0.00 2.92
328 329 6.869695 TGCTACCAAATGTCTAACTCGATAA 58.130 36.000 0.00 0.00 0.00 1.75
329 330 6.978659 TGCTACCAAATGTCTAACTCGATAAG 59.021 38.462 0.00 0.00 0.00 1.73
330 331 7.147966 TGCTACCAAATGTCTAACTCGATAAGA 60.148 37.037 0.00 0.00 0.00 2.10
368 369 2.997485 GCAAGGGCAAGAGTTTACAG 57.003 50.000 0.00 0.00 40.72 2.74
369 370 1.541588 GCAAGGGCAAGAGTTTACAGG 59.458 52.381 0.00 0.00 40.72 4.00
370 371 1.541588 CAAGGGCAAGAGTTTACAGGC 59.458 52.381 0.00 0.00 0.00 4.85
371 372 0.038310 AGGGCAAGAGTTTACAGGCC 59.962 55.000 0.00 0.00 44.47 5.19
372 373 0.038310 GGGCAAGAGTTTACAGGCCT 59.962 55.000 0.00 0.00 41.12 5.19
373 374 1.280998 GGGCAAGAGTTTACAGGCCTA 59.719 52.381 3.98 0.00 41.12 3.93
374 375 2.357075 GGCAAGAGTTTACAGGCCTAC 58.643 52.381 3.98 0.00 38.37 3.18
375 376 2.027100 GGCAAGAGTTTACAGGCCTACT 60.027 50.000 3.98 4.93 38.37 2.57
376 377 3.197116 GGCAAGAGTTTACAGGCCTACTA 59.803 47.826 3.98 0.00 38.37 1.82
377 378 4.141688 GGCAAGAGTTTACAGGCCTACTAT 60.142 45.833 3.98 0.00 38.37 2.12
378 379 5.051153 GCAAGAGTTTACAGGCCTACTATC 58.949 45.833 3.98 0.00 0.00 2.08
379 380 5.395324 GCAAGAGTTTACAGGCCTACTATCA 60.395 44.000 3.98 0.00 0.00 2.15
380 381 6.640518 CAAGAGTTTACAGGCCTACTATCAA 58.359 40.000 3.98 0.00 0.00 2.57
381 382 7.275920 CAAGAGTTTACAGGCCTACTATCAAT 58.724 38.462 3.98 0.00 0.00 2.57
382 383 7.056844 AGAGTTTACAGGCCTACTATCAATC 57.943 40.000 3.98 0.00 0.00 2.67
383 384 6.611642 AGAGTTTACAGGCCTACTATCAATCA 59.388 38.462 3.98 0.00 0.00 2.57
384 385 7.125811 AGAGTTTACAGGCCTACTATCAATCAA 59.874 37.037 3.98 0.00 0.00 2.57
385 386 7.275920 AGTTTACAGGCCTACTATCAATCAAG 58.724 38.462 3.98 0.00 0.00 3.02
386 387 4.078639 ACAGGCCTACTATCAATCAAGC 57.921 45.455 3.98 0.00 0.00 4.01
387 388 3.181450 ACAGGCCTACTATCAATCAAGCC 60.181 47.826 3.98 0.00 39.49 4.35
388 389 2.373502 AGGCCTACTATCAATCAAGCCC 59.626 50.000 1.29 0.00 40.06 5.19
389 390 2.373502 GGCCTACTATCAATCAAGCCCT 59.626 50.000 0.00 0.00 32.93 5.19
390 391 3.583086 GGCCTACTATCAATCAAGCCCTA 59.417 47.826 0.00 0.00 32.93 3.53
391 392 4.041691 GGCCTACTATCAATCAAGCCCTAA 59.958 45.833 0.00 0.00 32.93 2.69
392 393 5.241662 GCCTACTATCAATCAAGCCCTAAG 58.758 45.833 0.00 0.00 0.00 2.18
393 394 5.221742 GCCTACTATCAATCAAGCCCTAAGT 60.222 44.000 0.00 0.00 0.00 2.24
394 395 6.226787 CCTACTATCAATCAAGCCCTAAGTG 58.773 44.000 0.00 0.00 0.00 3.16
395 396 5.957771 ACTATCAATCAAGCCCTAAGTGA 57.042 39.130 0.00 0.00 0.00 3.41
396 397 6.313519 ACTATCAATCAAGCCCTAAGTGAA 57.686 37.500 0.00 0.00 0.00 3.18
397 398 6.721318 ACTATCAATCAAGCCCTAAGTGAAA 58.279 36.000 0.00 0.00 0.00 2.69
398 399 7.175104 ACTATCAATCAAGCCCTAAGTGAAAA 58.825 34.615 0.00 0.00 0.00 2.29
399 400 6.916360 ATCAATCAAGCCCTAAGTGAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
400 401 6.084326 TCAATCAAGCCCTAAGTGAAAAAC 57.916 37.500 0.00 0.00 0.00 2.43
401 402 5.833131 TCAATCAAGCCCTAAGTGAAAAACT 59.167 36.000 0.00 0.00 42.60 2.66
402 403 5.712152 ATCAAGCCCTAAGTGAAAAACTG 57.288 39.130 0.00 0.00 39.81 3.16
403 404 4.787551 TCAAGCCCTAAGTGAAAAACTGA 58.212 39.130 0.00 0.00 39.81 3.41
404 405 5.197451 TCAAGCCCTAAGTGAAAAACTGAA 58.803 37.500 0.00 0.00 39.81 3.02
405 406 5.654650 TCAAGCCCTAAGTGAAAAACTGAAA 59.345 36.000 0.00 0.00 39.81 2.69
406 407 6.153680 TCAAGCCCTAAGTGAAAAACTGAAAA 59.846 34.615 0.00 0.00 39.81 2.29
407 408 6.731292 AGCCCTAAGTGAAAAACTGAAAAT 57.269 33.333 0.00 0.00 39.81 1.82
408 409 7.124573 AGCCCTAAGTGAAAAACTGAAAATT 57.875 32.000 0.00 0.00 39.81 1.82
409 410 8.245195 AGCCCTAAGTGAAAAACTGAAAATTA 57.755 30.769 0.00 0.00 39.81 1.40
410 411 8.360390 AGCCCTAAGTGAAAAACTGAAAATTAG 58.640 33.333 0.00 0.00 39.81 1.73
411 412 7.598869 GCCCTAAGTGAAAAACTGAAAATTAGG 59.401 37.037 0.00 0.00 39.81 2.69
412 413 8.856103 CCCTAAGTGAAAAACTGAAAATTAGGA 58.144 33.333 8.38 0.00 39.81 2.94
417 418 9.599866 AGTGAAAAACTGAAAATTAGGAAAAGG 57.400 29.630 0.00 0.00 37.88 3.11
418 419 9.594478 GTGAAAAACTGAAAATTAGGAAAAGGA 57.406 29.630 0.00 0.00 0.00 3.36
424 425 9.559732 AACTGAAAATTAGGAAAAGGAAATTGG 57.440 29.630 0.00 0.00 0.00 3.16
425 426 8.156820 ACTGAAAATTAGGAAAAGGAAATTGGG 58.843 33.333 0.00 0.00 0.00 4.12
426 427 8.268878 TGAAAATTAGGAAAAGGAAATTGGGA 57.731 30.769 0.00 0.00 0.00 4.37
427 428 8.718656 TGAAAATTAGGAAAAGGAAATTGGGAA 58.281 29.630 0.00 0.00 0.00 3.97
428 429 9.567776 GAAAATTAGGAAAAGGAAATTGGGAAA 57.432 29.630 0.00 0.00 0.00 3.13
429 430 9.573166 AAAATTAGGAAAAGGAAATTGGGAAAG 57.427 29.630 0.00 0.00 0.00 2.62
430 431 8.504811 AATTAGGAAAAGGAAATTGGGAAAGA 57.495 30.769 0.00 0.00 0.00 2.52
431 432 7.922699 TTAGGAAAAGGAAATTGGGAAAGAA 57.077 32.000 0.00 0.00 0.00 2.52
432 433 8.504811 TTAGGAAAAGGAAATTGGGAAAGAAT 57.495 30.769 0.00 0.00 0.00 2.40
433 434 7.009179 AGGAAAAGGAAATTGGGAAAGAATC 57.991 36.000 0.00 0.00 0.00 2.52
434 435 6.558394 AGGAAAAGGAAATTGGGAAAGAATCA 59.442 34.615 0.00 0.00 0.00 2.57
435 436 7.072328 AGGAAAAGGAAATTGGGAAAGAATCAA 59.928 33.333 0.00 0.00 0.00 2.57
436 437 7.719193 GGAAAAGGAAATTGGGAAAGAATCAAA 59.281 33.333 0.00 0.00 0.00 2.69
437 438 8.681486 AAAAGGAAATTGGGAAAGAATCAAAG 57.319 30.769 0.00 0.00 0.00 2.77
438 439 7.616528 AAGGAAATTGGGAAAGAATCAAAGA 57.383 32.000 0.00 0.00 0.00 2.52
439 440 7.616528 AGGAAATTGGGAAAGAATCAAAGAA 57.383 32.000 0.00 0.00 0.00 2.52
440 441 8.033178 AGGAAATTGGGAAAGAATCAAAGAAA 57.967 30.769 0.00 0.00 0.00 2.52
441 442 8.663167 AGGAAATTGGGAAAGAATCAAAGAAAT 58.337 29.630 0.00 0.00 0.00 2.17
442 443 9.288576 GGAAATTGGGAAAGAATCAAAGAAATT 57.711 29.630 0.00 0.00 0.00 1.82
447 448 9.981114 TTGGGAAAGAATCAAAGAAATTACTTC 57.019 29.630 0.00 0.00 0.00 3.01
448 449 9.367160 TGGGAAAGAATCAAAGAAATTACTTCT 57.633 29.630 0.00 0.00 46.92 2.85
449 450 9.631452 GGGAAAGAATCAAAGAAATTACTTCTG 57.369 33.333 0.00 0.00 44.00 3.02
450 451 9.133627 GGAAAGAATCAAAGAAATTACTTCTGC 57.866 33.333 0.00 0.00 44.00 4.26
451 452 9.683069 GAAAGAATCAAAGAAATTACTTCTGCA 57.317 29.630 0.00 0.00 44.00 4.41
452 453 9.688592 AAAGAATCAAAGAAATTACTTCTGCAG 57.311 29.630 7.63 7.63 44.00 4.41
453 454 7.311408 AGAATCAAAGAAATTACTTCTGCAGC 58.689 34.615 9.47 0.00 44.00 5.25
454 455 6.830873 ATCAAAGAAATTACTTCTGCAGCT 57.169 33.333 9.47 0.00 44.00 4.24
455 456 6.246420 TCAAAGAAATTACTTCTGCAGCTC 57.754 37.500 9.47 0.00 44.00 4.09
456 457 6.000219 TCAAAGAAATTACTTCTGCAGCTCT 59.000 36.000 9.47 0.00 44.00 4.09
457 458 6.488006 TCAAAGAAATTACTTCTGCAGCTCTT 59.512 34.615 9.47 3.98 44.00 2.85
458 459 5.876612 AGAAATTACTTCTGCAGCTCTTG 57.123 39.130 9.47 0.00 43.09 3.02
459 460 4.699257 AGAAATTACTTCTGCAGCTCTTGG 59.301 41.667 9.47 0.00 43.09 3.61
460 461 1.813513 TTACTTCTGCAGCTCTTGGC 58.186 50.000 9.47 0.00 42.19 4.52
496 502 4.101790 GGCCGTTGACCATGTGCG 62.102 66.667 0.00 0.00 0.00 5.34
500 506 0.650512 CCGTTGACCATGTGCGATAC 59.349 55.000 0.00 0.00 0.00 2.24
547 553 1.015085 CGATAACGACGGGCCAAACA 61.015 55.000 4.39 0.00 42.66 2.83
563 569 2.100991 CATCCGCGAGCCTTTTGC 59.899 61.111 8.23 0.00 41.71 3.68
581 587 6.317140 CCTTTTGCGATATGGTATATCAGCAT 59.683 38.462 19.02 5.68 46.86 3.79
582 588 6.667007 TTTGCGATATGGTATATCAGCATG 57.333 37.500 19.02 0.00 44.95 4.06
583 589 4.122046 TGCGATATGGTATATCAGCATGC 58.878 43.478 10.51 10.51 44.95 4.06
588 596 6.518875 CGATATGGTATATCAGCATGCCCATA 60.519 42.308 23.28 23.28 44.95 2.74
601 609 4.443175 GCATGCCCATACATCCAATTTCAA 60.443 41.667 6.36 0.00 0.00 2.69
624 632 2.020079 CGTTCTATCTCACGTAGGCG 57.980 55.000 0.00 0.00 44.93 5.52
646 654 4.618460 CGGAAGCTAGCTCTCTTGTTGTTA 60.618 45.833 19.65 0.00 0.00 2.41
697 705 0.921347 CCGGAGATTACAAACTCGCG 59.079 55.000 0.00 0.00 34.40 5.87
701 709 2.991190 GGAGATTACAAACTCGCGAACA 59.009 45.455 11.33 0.00 34.40 3.18
732 740 2.154462 CCCAGTCGAGCTTTGTTGATT 58.846 47.619 0.00 0.00 0.00 2.57
735 743 3.365364 CCAGTCGAGCTTTGTTGATTTCC 60.365 47.826 0.00 0.00 0.00 3.13
739 747 4.024048 GTCGAGCTTTGTTGATTTCCTCAA 60.024 41.667 0.00 0.00 41.61 3.02
814 822 2.542411 CCACGCCTATGTCTACGTAACC 60.542 54.545 0.00 0.00 36.91 2.85
815 823 2.357009 CACGCCTATGTCTACGTAACCT 59.643 50.000 0.00 0.00 36.91 3.50
816 824 2.357009 ACGCCTATGTCTACGTAACCTG 59.643 50.000 0.00 0.00 36.91 4.00
817 825 2.615447 CGCCTATGTCTACGTAACCTGA 59.385 50.000 0.00 0.00 0.00 3.86
818 826 3.547613 CGCCTATGTCTACGTAACCTGAC 60.548 52.174 0.00 1.12 0.00 3.51
819 827 3.379372 GCCTATGTCTACGTAACCTGACA 59.621 47.826 15.22 15.22 42.50 3.58
820 828 4.142315 GCCTATGTCTACGTAACCTGACAA 60.142 45.833 16.40 7.84 41.78 3.18
821 829 5.451520 GCCTATGTCTACGTAACCTGACAAT 60.452 44.000 16.40 9.64 41.78 2.71
895 903 2.202932 GGCATCGTCGACCTGCAT 60.203 61.111 28.57 8.59 37.64 3.96
896 904 1.067416 GGCATCGTCGACCTGCATA 59.933 57.895 28.57 4.48 37.64 3.14
897 905 0.941463 GGCATCGTCGACCTGCATAG 60.941 60.000 28.57 8.64 37.64 2.23
898 906 0.030773 GCATCGTCGACCTGCATAGA 59.969 55.000 24.95 10.40 35.96 1.98
899 907 1.336332 GCATCGTCGACCTGCATAGAT 60.336 52.381 24.95 12.01 35.96 1.98
900 908 2.590073 CATCGTCGACCTGCATAGATC 58.410 52.381 10.58 0.00 0.00 2.75
901 909 1.968704 TCGTCGACCTGCATAGATCT 58.031 50.000 10.58 0.00 0.00 2.75
902 910 3.121738 TCGTCGACCTGCATAGATCTA 57.878 47.619 10.58 4.57 0.00 1.98
903 911 2.806818 TCGTCGACCTGCATAGATCTAC 59.193 50.000 10.58 0.00 0.00 2.59
904 912 2.548480 CGTCGACCTGCATAGATCTACA 59.452 50.000 10.58 0.00 0.00 2.74
905 913 3.364465 CGTCGACCTGCATAGATCTACAG 60.364 52.174 10.58 8.82 0.00 2.74
909 917 3.316071 CCTGCATAGATCTACAGGCTG 57.684 52.381 20.66 14.16 42.96 4.85
910 918 2.028294 CCTGCATAGATCTACAGGCTGG 60.028 54.545 20.66 21.80 42.96 4.85
911 919 1.345741 TGCATAGATCTACAGGCTGGC 59.654 52.381 20.34 9.44 0.00 4.85
912 920 1.345741 GCATAGATCTACAGGCTGGCA 59.654 52.381 20.34 5.12 0.00 4.92
956 964 5.242838 AGCTCTACTGAATTCCGATCCTTAG 59.757 44.000 2.27 0.00 0.00 2.18
1317 1325 0.725784 GATGCGTTTTGTGTGCCTCG 60.726 55.000 0.00 0.00 0.00 4.63
1388 1402 1.204113 AAGTAAGAGCTGCTGGGCCT 61.204 55.000 7.01 0.00 0.00 5.19
1396 1410 3.447025 CTGCTGGGCCTAGCGGTAC 62.447 68.421 35.30 12.28 46.61 3.34
1409 1427 4.341520 CCTAGCGGTACCTATTTCTCTGTT 59.658 45.833 10.90 0.00 0.00 3.16
1509 2960 3.650942 TCCTACCCTTTGTGTTGTGATCT 59.349 43.478 0.00 0.00 0.00 2.75
1590 3041 7.663043 TCAAACTGGGTTATTTGGTTTTAGT 57.337 32.000 0.00 0.00 36.62 2.24
1591 3042 8.763984 TCAAACTGGGTTATTTGGTTTTAGTA 57.236 30.769 0.00 0.00 36.62 1.82
1711 3277 1.456296 TGCTGCATGACCTGATCAAC 58.544 50.000 0.00 0.00 41.93 3.18
1760 3326 0.460311 CGTGAAGGGCCGAAGATACT 59.540 55.000 0.00 0.00 0.00 2.12
1777 3343 0.035458 ACTGAAAGAACTCGGCCCAG 59.965 55.000 0.00 0.00 37.43 4.45
1779 3345 0.984230 TGAAAGAACTCGGCCCAGAT 59.016 50.000 3.62 0.00 0.00 2.90
1812 3422 1.444836 TTTCGGCAAATCGGGTGTAG 58.555 50.000 0.00 0.00 0.00 2.74
1817 3427 0.392461 GCAAATCGGGTGTAGAGCCA 60.392 55.000 9.01 0.00 40.05 4.75
1840 3450 0.377203 GGTTCCTATTTGGCGCTTCG 59.623 55.000 7.64 0.00 35.26 3.79
1881 3491 0.106769 TGCAAACAGGCACCTGAAGA 60.107 50.000 23.30 0.00 46.30 2.87
1965 3576 1.901464 AAAAAGGTGCACGGGCGAT 60.901 52.632 11.45 0.00 45.35 4.58
1989 3600 1.538512 TCAAACTCGAGACCCGTACAG 59.461 52.381 21.68 0.00 39.75 2.74
1993 3604 0.727970 CTCGAGACCCGTACAGTCAG 59.272 60.000 6.58 8.34 39.75 3.51
1997 3608 0.251209 AGACCCGTACAGTCAGAGCA 60.251 55.000 13.78 0.00 36.68 4.26
2074 3685 8.746052 TGTTCTTTTATTCTTTCTCCAGTTCA 57.254 30.769 0.00 0.00 0.00 3.18
2086 3703 8.244113 TCTTTCTCCAGTTCACTTTTCTTTTTC 58.756 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.857822 GGCACGAACTCAACTAAAGTAAT 57.142 39.130 0.00 0.00 0.00 1.89
22 23 1.495584 CCCATATTCGCCGTGGTTCG 61.496 60.000 0.00 0.00 39.52 3.95
23 24 1.782028 GCCCATATTCGCCGTGGTTC 61.782 60.000 0.00 0.00 0.00 3.62
24 25 1.822186 GCCCATATTCGCCGTGGTT 60.822 57.895 0.00 0.00 0.00 3.67
25 26 2.203153 GCCCATATTCGCCGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
26 27 2.978010 GGCCCATATTCGCCGTGG 60.978 66.667 0.00 0.00 34.94 4.94
30 31 0.240945 CAAATCGGCCCATATTCGCC 59.759 55.000 0.00 0.33 42.05 5.54
31 32 0.951558 ACAAATCGGCCCATATTCGC 59.048 50.000 0.00 0.00 0.00 4.70
32 33 1.334960 GCACAAATCGGCCCATATTCG 60.335 52.381 0.00 0.00 0.00 3.34
33 34 1.000274 GGCACAAATCGGCCCATATTC 60.000 52.381 0.00 0.00 44.53 1.75
34 35 1.039856 GGCACAAATCGGCCCATATT 58.960 50.000 0.00 0.00 44.53 1.28
35 36 2.732289 GGCACAAATCGGCCCATAT 58.268 52.632 0.00 0.00 44.53 1.78
36 37 4.251246 GGCACAAATCGGCCCATA 57.749 55.556 0.00 0.00 44.53 2.74
51 52 1.816074 TAAATCGGCCCGATATTGGC 58.184 50.000 20.72 6.08 46.30 4.52
52 53 2.607635 CGATAAATCGGCCCGATATTGG 59.392 50.000 20.72 4.87 46.30 3.16
53 54 2.030457 GCGATAAATCGGCCCGATATTG 59.970 50.000 20.72 14.67 46.30 1.90
54 55 2.277084 GCGATAAATCGGCCCGATATT 58.723 47.619 20.72 16.97 46.30 1.28
55 56 1.935933 GCGATAAATCGGCCCGATAT 58.064 50.000 20.72 10.32 46.30 1.63
56 57 3.429043 GCGATAAATCGGCCCGATA 57.571 52.632 20.72 4.83 46.30 2.92
65 66 3.606153 CGACCCATTTTCGGCGATAAATC 60.606 47.826 16.26 10.62 32.66 2.17
66 67 2.289547 CGACCCATTTTCGGCGATAAAT 59.710 45.455 16.26 17.26 32.66 1.40
67 68 1.666700 CGACCCATTTTCGGCGATAAA 59.333 47.619 16.26 15.94 32.66 1.40
68 69 1.134759 TCGACCCATTTTCGGCGATAA 60.135 47.619 11.76 13.55 37.09 1.75
69 70 0.460722 TCGACCCATTTTCGGCGATA 59.539 50.000 11.76 2.15 37.09 2.92
70 71 0.391927 TTCGACCCATTTTCGGCGAT 60.392 50.000 11.76 0.00 37.09 4.58
71 72 0.603172 TTTCGACCCATTTTCGGCGA 60.603 50.000 4.99 4.99 37.09 5.54
72 73 0.238817 TTTTCGACCCATTTTCGGCG 59.761 50.000 0.00 0.00 37.09 6.46
73 74 1.977188 CTTTTCGACCCATTTTCGGC 58.023 50.000 0.00 0.00 37.09 5.54
74 75 1.727857 CGCTTTTCGACCCATTTTCGG 60.728 52.381 0.00 0.00 41.67 4.30
75 76 1.602191 CGCTTTTCGACCCATTTTCG 58.398 50.000 0.00 0.00 41.67 3.46
76 77 1.268625 ACCGCTTTTCGACCCATTTTC 59.731 47.619 0.00 0.00 41.67 2.29
77 78 1.268625 GACCGCTTTTCGACCCATTTT 59.731 47.619 0.00 0.00 41.67 1.82
78 79 0.879090 GACCGCTTTTCGACCCATTT 59.121 50.000 0.00 0.00 41.67 2.32
79 80 0.250553 TGACCGCTTTTCGACCCATT 60.251 50.000 0.00 0.00 41.67 3.16
80 81 0.953960 GTGACCGCTTTTCGACCCAT 60.954 55.000 0.00 0.00 41.67 4.00
81 82 1.595929 GTGACCGCTTTTCGACCCA 60.596 57.895 0.00 0.00 41.67 4.51
82 83 0.953960 ATGTGACCGCTTTTCGACCC 60.954 55.000 0.00 0.00 41.67 4.46
83 84 0.872388 AATGTGACCGCTTTTCGACC 59.128 50.000 0.00 0.00 41.67 4.79
84 85 2.681152 AAATGTGACCGCTTTTCGAC 57.319 45.000 0.00 0.00 41.67 4.20
85 86 3.367607 CAAAAATGTGACCGCTTTTCGA 58.632 40.909 0.00 0.00 41.67 3.71
86 87 2.097444 GCAAAAATGTGACCGCTTTTCG 60.097 45.455 0.00 0.00 38.08 3.46
87 88 2.863137 TGCAAAAATGTGACCGCTTTTC 59.137 40.909 0.00 0.00 0.00 2.29
88 89 2.898705 TGCAAAAATGTGACCGCTTTT 58.101 38.095 0.00 0.00 0.00 2.27
89 90 2.593346 TGCAAAAATGTGACCGCTTT 57.407 40.000 0.00 0.00 0.00 3.51
90 91 2.593346 TTGCAAAAATGTGACCGCTT 57.407 40.000 0.00 0.00 0.00 4.68
91 92 2.593346 TTTGCAAAAATGTGACCGCT 57.407 40.000 10.02 0.00 0.00 5.52
92 93 3.665173 TTTTTGCAAAAATGTGACCGC 57.335 38.095 28.85 0.00 33.29 5.68
119 120 4.742201 CCCCAGGCGCCGATATCG 62.742 72.222 23.20 18.31 39.44 2.92
131 132 4.431524 TCCCCTAGGTGGCCCCAG 62.432 72.222 8.29 7.57 34.66 4.45
132 133 4.431524 CTCCCCTAGGTGGCCCCA 62.432 72.222 8.29 0.00 34.66 4.96
149 150 4.759205 ATTGGGTTCCCAGCCGCC 62.759 66.667 10.62 0.00 44.44 6.13
150 151 3.140814 GATTGGGTTCCCAGCCGC 61.141 66.667 10.62 0.00 44.44 6.53
151 152 2.824041 CGATTGGGTTCCCAGCCG 60.824 66.667 10.62 13.43 44.44 5.52
152 153 1.749258 GTCGATTGGGTTCCCAGCC 60.749 63.158 10.62 6.17 41.49 4.85
153 154 1.749258 GGTCGATTGGGTTCCCAGC 60.749 63.158 10.62 6.70 37.42 4.85
154 155 1.077716 GGGTCGATTGGGTTCCCAG 60.078 63.158 10.62 0.27 37.42 4.45
155 156 2.608550 GGGGTCGATTGGGTTCCCA 61.609 63.158 6.46 6.46 39.85 4.37
156 157 2.144859 TTGGGGTCGATTGGGTTCCC 62.145 60.000 0.12 0.12 37.59 3.97
157 158 0.963856 GTTGGGGTCGATTGGGTTCC 60.964 60.000 0.00 0.00 0.00 3.62
158 159 1.303091 CGTTGGGGTCGATTGGGTTC 61.303 60.000 0.00 0.00 0.00 3.62
159 160 1.302993 CGTTGGGGTCGATTGGGTT 60.303 57.895 0.00 0.00 0.00 4.11
160 161 2.349755 CGTTGGGGTCGATTGGGT 59.650 61.111 0.00 0.00 0.00 4.51
161 162 3.131478 GCGTTGGGGTCGATTGGG 61.131 66.667 0.00 0.00 0.00 4.12
162 163 2.046314 AGCGTTGGGGTCGATTGG 60.046 61.111 0.00 0.00 0.00 3.16
163 164 1.234615 AACAGCGTTGGGGTCGATTG 61.235 55.000 3.74 0.00 0.00 2.67
164 165 0.536460 AAACAGCGTTGGGGTCGATT 60.536 50.000 3.74 0.00 0.00 3.34
165 166 0.536460 AAAACAGCGTTGGGGTCGAT 60.536 50.000 3.74 0.00 0.00 3.59
166 167 0.748729 AAAAACAGCGTTGGGGTCGA 60.749 50.000 3.74 0.00 0.00 4.20
167 168 0.945813 TAAAAACAGCGTTGGGGTCG 59.054 50.000 3.74 0.00 0.00 4.79
168 169 1.335597 GCTAAAAACAGCGTTGGGGTC 60.336 52.381 3.74 0.00 0.00 4.46
169 170 0.671796 GCTAAAAACAGCGTTGGGGT 59.328 50.000 3.74 0.00 0.00 4.95
170 171 3.489813 GCTAAAAACAGCGTTGGGG 57.510 52.632 3.74 0.00 0.00 4.96
177 178 2.504026 GCCGGCGCTAAAAACAGC 60.504 61.111 12.58 0.00 38.23 4.40
178 179 3.263941 AGCCGGCGCTAAAAACAG 58.736 55.556 23.20 0.00 46.08 3.16
200 201 1.202143 GCTTAAAAATCGCCGTCTGGG 60.202 52.381 0.00 0.00 39.58 4.45
201 202 1.202143 GGCTTAAAAATCGCCGTCTGG 60.202 52.381 0.00 0.00 33.64 3.86
202 203 2.174060 GGCTTAAAAATCGCCGTCTG 57.826 50.000 0.00 0.00 33.64 3.51
207 208 1.330829 CGAGGAGGCTTAAAAATCGCC 59.669 52.381 0.00 0.00 44.09 5.54
208 209 1.330829 CCGAGGAGGCTTAAAAATCGC 59.669 52.381 0.00 0.00 0.00 4.58
209 210 1.940613 CCCGAGGAGGCTTAAAAATCG 59.059 52.381 0.00 0.00 39.21 3.34
210 211 2.298610 CCCCGAGGAGGCTTAAAAATC 58.701 52.381 0.00 0.00 39.21 2.17
211 212 1.063942 CCCCCGAGGAGGCTTAAAAAT 60.064 52.381 0.00 0.00 38.24 1.82
212 213 0.330267 CCCCCGAGGAGGCTTAAAAA 59.670 55.000 0.00 0.00 38.24 1.94
213 214 1.996086 CCCCCGAGGAGGCTTAAAA 59.004 57.895 0.00 0.00 38.24 1.52
214 215 3.735725 CCCCCGAGGAGGCTTAAA 58.264 61.111 0.00 0.00 38.24 1.52
234 235 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
245 246 6.215495 AGTGGAGTTAAGTCTTAGAGCATC 57.785 41.667 10.10 0.00 0.00 3.91
246 247 6.893005 ACTAGTGGAGTTAAGTCTTAGAGCAT 59.107 38.462 10.10 0.00 33.13 3.79
247 248 6.246919 ACTAGTGGAGTTAAGTCTTAGAGCA 58.753 40.000 10.10 0.00 33.13 4.26
248 249 6.600427 AGACTAGTGGAGTTAAGTCTTAGAGC 59.400 42.308 0.00 7.78 44.81 4.09
255 256 6.985059 ACAACAAAGACTAGTGGAGTTAAGTC 59.015 38.462 0.00 1.31 39.06 3.01
256 257 6.885922 ACAACAAAGACTAGTGGAGTTAAGT 58.114 36.000 0.00 0.00 39.06 2.24
257 258 7.711339 AGAACAACAAAGACTAGTGGAGTTAAG 59.289 37.037 0.00 0.00 39.06 1.85
258 259 7.562135 AGAACAACAAAGACTAGTGGAGTTAA 58.438 34.615 0.00 0.00 39.06 2.01
259 260 7.120923 AGAACAACAAAGACTAGTGGAGTTA 57.879 36.000 0.00 0.00 39.06 2.24
260 261 5.990668 AGAACAACAAAGACTAGTGGAGTT 58.009 37.500 0.00 0.00 39.06 3.01
261 262 5.602628 GAGAACAACAAAGACTAGTGGAGT 58.397 41.667 0.00 0.00 42.90 3.85
262 263 4.681942 CGAGAACAACAAAGACTAGTGGAG 59.318 45.833 0.00 0.00 0.00 3.86
263 264 4.617959 CGAGAACAACAAAGACTAGTGGA 58.382 43.478 0.00 0.00 0.00 4.02
264 265 3.184581 GCGAGAACAACAAAGACTAGTGG 59.815 47.826 0.00 0.00 0.00 4.00
265 266 3.121328 CGCGAGAACAACAAAGACTAGTG 60.121 47.826 0.00 0.00 0.00 2.74
266 267 3.050619 CGCGAGAACAACAAAGACTAGT 58.949 45.455 0.00 0.00 0.00 2.57
267 268 3.050619 ACGCGAGAACAACAAAGACTAG 58.949 45.455 15.93 0.00 0.00 2.57
268 269 3.088194 ACGCGAGAACAACAAAGACTA 57.912 42.857 15.93 0.00 0.00 2.59
269 270 1.935933 ACGCGAGAACAACAAAGACT 58.064 45.000 15.93 0.00 0.00 3.24
270 271 2.029970 TCAACGCGAGAACAACAAAGAC 59.970 45.455 15.93 0.00 0.00 3.01
271 272 2.272678 TCAACGCGAGAACAACAAAGA 58.727 42.857 15.93 0.00 0.00 2.52
272 273 2.030457 ACTCAACGCGAGAACAACAAAG 59.970 45.455 15.93 0.00 45.45 2.77
273 274 2.004017 ACTCAACGCGAGAACAACAAA 58.996 42.857 15.93 0.00 45.45 2.83
274 275 1.591158 GACTCAACGCGAGAACAACAA 59.409 47.619 15.93 0.00 45.45 2.83
275 276 1.205657 GACTCAACGCGAGAACAACA 58.794 50.000 15.93 0.00 45.45 3.33
276 277 1.205657 TGACTCAACGCGAGAACAAC 58.794 50.000 15.93 0.00 45.45 3.32
277 278 1.858458 CTTGACTCAACGCGAGAACAA 59.142 47.619 15.93 16.49 45.45 2.83
278 279 1.202371 ACTTGACTCAACGCGAGAACA 60.202 47.619 15.93 10.45 45.45 3.18
279 280 1.488527 ACTTGACTCAACGCGAGAAC 58.511 50.000 15.93 8.01 45.45 3.01
280 281 3.570926 ATACTTGACTCAACGCGAGAA 57.429 42.857 15.93 0.00 45.45 2.87
281 282 3.570926 AATACTTGACTCAACGCGAGA 57.429 42.857 15.93 9.72 45.45 4.04
283 284 4.032445 GCATAAATACTTGACTCAACGCGA 59.968 41.667 15.93 0.00 0.00 5.87
284 285 4.032900 AGCATAAATACTTGACTCAACGCG 59.967 41.667 3.53 3.53 0.00 6.01
285 286 5.470845 AGCATAAATACTTGACTCAACGC 57.529 39.130 0.00 0.00 0.00 4.84
286 287 6.533723 TGGTAGCATAAATACTTGACTCAACG 59.466 38.462 0.00 0.00 0.00 4.10
287 288 7.843490 TGGTAGCATAAATACTTGACTCAAC 57.157 36.000 0.00 0.00 0.00 3.18
288 289 8.856153 TTTGGTAGCATAAATACTTGACTCAA 57.144 30.769 0.00 0.00 0.00 3.02
289 290 8.892723 CATTTGGTAGCATAAATACTTGACTCA 58.107 33.333 0.00 0.00 0.00 3.41
290 291 8.893727 ACATTTGGTAGCATAAATACTTGACTC 58.106 33.333 0.00 0.00 0.00 3.36
291 292 8.807948 ACATTTGGTAGCATAAATACTTGACT 57.192 30.769 0.00 0.00 0.00 3.41
292 293 8.893727 AGACATTTGGTAGCATAAATACTTGAC 58.106 33.333 0.00 0.00 0.00 3.18
298 299 9.256477 CGAGTTAGACATTTGGTAGCATAAATA 57.744 33.333 0.00 0.00 0.00 1.40
299 300 7.985184 TCGAGTTAGACATTTGGTAGCATAAAT 59.015 33.333 0.00 0.00 0.00 1.40
300 301 7.324935 TCGAGTTAGACATTTGGTAGCATAAA 58.675 34.615 0.00 0.00 0.00 1.40
301 302 6.869695 TCGAGTTAGACATTTGGTAGCATAA 58.130 36.000 0.00 0.00 0.00 1.90
302 303 6.459670 TCGAGTTAGACATTTGGTAGCATA 57.540 37.500 0.00 0.00 0.00 3.14
303 304 5.339008 TCGAGTTAGACATTTGGTAGCAT 57.661 39.130 0.00 0.00 0.00 3.79
304 305 4.794278 TCGAGTTAGACATTTGGTAGCA 57.206 40.909 0.00 0.00 0.00 3.49
305 306 7.201145 TCTTATCGAGTTAGACATTTGGTAGC 58.799 38.462 0.00 0.00 0.00 3.58
306 307 8.789881 CTCTTATCGAGTTAGACATTTGGTAG 57.210 38.462 0.00 0.00 34.95 3.18
349 350 1.541588 CCTGTAAACTCTTGCCCTTGC 59.458 52.381 0.00 0.00 38.26 4.01
350 351 1.541588 GCCTGTAAACTCTTGCCCTTG 59.458 52.381 0.00 0.00 0.00 3.61
351 352 1.547901 GGCCTGTAAACTCTTGCCCTT 60.548 52.381 0.00 0.00 32.74 3.95
352 353 0.038310 GGCCTGTAAACTCTTGCCCT 59.962 55.000 0.00 0.00 32.74 5.19
353 354 0.038310 AGGCCTGTAAACTCTTGCCC 59.962 55.000 3.11 0.00 39.72 5.36
354 355 2.027100 AGTAGGCCTGTAAACTCTTGCC 60.027 50.000 17.99 0.00 39.17 4.52
355 356 3.336138 AGTAGGCCTGTAAACTCTTGC 57.664 47.619 17.99 0.00 0.00 4.01
356 357 6.222038 TGATAGTAGGCCTGTAAACTCTTG 57.778 41.667 17.99 0.00 0.00 3.02
357 358 6.869206 TTGATAGTAGGCCTGTAAACTCTT 57.131 37.500 17.99 1.87 0.00 2.85
358 359 6.611642 TGATTGATAGTAGGCCTGTAAACTCT 59.388 38.462 17.99 2.86 0.00 3.24
359 360 6.817184 TGATTGATAGTAGGCCTGTAAACTC 58.183 40.000 17.99 5.25 0.00 3.01
360 361 6.808321 TGATTGATAGTAGGCCTGTAAACT 57.192 37.500 17.99 13.72 0.00 2.66
361 362 6.017852 GCTTGATTGATAGTAGGCCTGTAAAC 60.018 42.308 17.99 5.17 0.00 2.01
362 363 6.055588 GCTTGATTGATAGTAGGCCTGTAAA 58.944 40.000 17.99 1.36 0.00 2.01
363 364 5.454755 GGCTTGATTGATAGTAGGCCTGTAA 60.455 44.000 17.99 0.00 35.92 2.41
364 365 4.040461 GGCTTGATTGATAGTAGGCCTGTA 59.960 45.833 17.99 7.39 35.92 2.74
365 366 3.181450 GGCTTGATTGATAGTAGGCCTGT 60.181 47.826 17.99 4.88 35.92 4.00
366 367 3.406764 GGCTTGATTGATAGTAGGCCTG 58.593 50.000 17.99 0.00 35.92 4.85
367 368 2.373502 GGGCTTGATTGATAGTAGGCCT 59.626 50.000 11.78 11.78 45.27 5.19
368 369 2.784347 GGGCTTGATTGATAGTAGGCC 58.216 52.381 0.00 0.00 43.11 5.19
369 370 3.778954 AGGGCTTGATTGATAGTAGGC 57.221 47.619 0.00 0.00 0.00 3.93
370 371 6.042093 TCACTTAGGGCTTGATTGATAGTAGG 59.958 42.308 0.00 0.00 0.00 3.18
371 372 7.055667 TCACTTAGGGCTTGATTGATAGTAG 57.944 40.000 0.00 0.00 0.00 2.57
372 373 7.432148 TTCACTTAGGGCTTGATTGATAGTA 57.568 36.000 0.00 0.00 0.00 1.82
373 374 5.957771 TCACTTAGGGCTTGATTGATAGT 57.042 39.130 0.00 0.00 0.00 2.12
374 375 7.630242 TTTTCACTTAGGGCTTGATTGATAG 57.370 36.000 0.00 0.00 0.00 2.08
375 376 7.669722 AGTTTTTCACTTAGGGCTTGATTGATA 59.330 33.333 0.00 0.00 27.32 2.15
376 377 6.494835 AGTTTTTCACTTAGGGCTTGATTGAT 59.505 34.615 0.00 0.00 27.32 2.57
377 378 5.833131 AGTTTTTCACTTAGGGCTTGATTGA 59.167 36.000 0.00 0.00 27.32 2.57
378 379 5.922544 CAGTTTTTCACTTAGGGCTTGATTG 59.077 40.000 0.00 0.00 30.92 2.67
379 380 5.833131 TCAGTTTTTCACTTAGGGCTTGATT 59.167 36.000 0.00 0.00 30.92 2.57
380 381 5.385198 TCAGTTTTTCACTTAGGGCTTGAT 58.615 37.500 0.00 0.00 30.92 2.57
381 382 4.787551 TCAGTTTTTCACTTAGGGCTTGA 58.212 39.130 0.00 0.00 30.92 3.02
382 383 5.514274 TTCAGTTTTTCACTTAGGGCTTG 57.486 39.130 0.00 0.00 30.92 4.01
383 384 6.538945 TTTTCAGTTTTTCACTTAGGGCTT 57.461 33.333 0.00 0.00 30.92 4.35
384 385 6.731292 ATTTTCAGTTTTTCACTTAGGGCT 57.269 33.333 0.00 0.00 30.92 5.19
385 386 7.598869 CCTAATTTTCAGTTTTTCACTTAGGGC 59.401 37.037 0.00 0.00 30.92 5.19
386 387 8.856103 TCCTAATTTTCAGTTTTTCACTTAGGG 58.144 33.333 0.00 0.00 32.46 3.53
391 392 9.599866 CCTTTTCCTAATTTTCAGTTTTTCACT 57.400 29.630 0.00 0.00 35.35 3.41
392 393 9.594478 TCCTTTTCCTAATTTTCAGTTTTTCAC 57.406 29.630 0.00 0.00 0.00 3.18
398 399 9.559732 CCAATTTCCTTTTCCTAATTTTCAGTT 57.440 29.630 0.00 0.00 0.00 3.16
399 400 8.156820 CCCAATTTCCTTTTCCTAATTTTCAGT 58.843 33.333 0.00 0.00 0.00 3.41
400 401 8.374743 TCCCAATTTCCTTTTCCTAATTTTCAG 58.625 33.333 0.00 0.00 0.00 3.02
401 402 8.268878 TCCCAATTTCCTTTTCCTAATTTTCA 57.731 30.769 0.00 0.00 0.00 2.69
402 403 9.567776 TTTCCCAATTTCCTTTTCCTAATTTTC 57.432 29.630 0.00 0.00 0.00 2.29
403 404 9.573166 CTTTCCCAATTTCCTTTTCCTAATTTT 57.427 29.630 0.00 0.00 0.00 1.82
404 405 8.944138 TCTTTCCCAATTTCCTTTTCCTAATTT 58.056 29.630 0.00 0.00 0.00 1.82
405 406 8.504811 TCTTTCCCAATTTCCTTTTCCTAATT 57.495 30.769 0.00 0.00 0.00 1.40
406 407 8.504811 TTCTTTCCCAATTTCCTTTTCCTAAT 57.495 30.769 0.00 0.00 0.00 1.73
407 408 7.922699 TTCTTTCCCAATTTCCTTTTCCTAA 57.077 32.000 0.00 0.00 0.00 2.69
408 409 7.732593 TGATTCTTTCCCAATTTCCTTTTCCTA 59.267 33.333 0.00 0.00 0.00 2.94
409 410 6.558394 TGATTCTTTCCCAATTTCCTTTTCCT 59.442 34.615 0.00 0.00 0.00 3.36
410 411 6.768483 TGATTCTTTCCCAATTTCCTTTTCC 58.232 36.000 0.00 0.00 0.00 3.13
411 412 8.675705 TTTGATTCTTTCCCAATTTCCTTTTC 57.324 30.769 0.00 0.00 0.00 2.29
412 413 8.493607 TCTTTGATTCTTTCCCAATTTCCTTTT 58.506 29.630 0.00 0.00 0.00 2.27
413 414 8.033178 TCTTTGATTCTTTCCCAATTTCCTTT 57.967 30.769 0.00 0.00 0.00 3.11
414 415 7.616528 TCTTTGATTCTTTCCCAATTTCCTT 57.383 32.000 0.00 0.00 0.00 3.36
415 416 7.616528 TTCTTTGATTCTTTCCCAATTTCCT 57.383 32.000 0.00 0.00 0.00 3.36
416 417 8.853077 ATTTCTTTGATTCTTTCCCAATTTCC 57.147 30.769 0.00 0.00 0.00 3.13
421 422 9.981114 GAAGTAATTTCTTTGATTCTTTCCCAA 57.019 29.630 0.00 0.00 32.83 4.12
422 423 9.367160 AGAAGTAATTTCTTTGATTCTTTCCCA 57.633 29.630 0.00 0.00 43.68 4.37
423 424 9.631452 CAGAAGTAATTTCTTTGATTCTTTCCC 57.369 33.333 0.00 0.00 43.68 3.97
424 425 9.133627 GCAGAAGTAATTTCTTTGATTCTTTCC 57.866 33.333 0.00 0.00 43.68 3.13
425 426 9.683069 TGCAGAAGTAATTTCTTTGATTCTTTC 57.317 29.630 0.00 0.00 43.68 2.62
426 427 9.688592 CTGCAGAAGTAATTTCTTTGATTCTTT 57.311 29.630 8.42 0.00 43.68 2.52
427 428 7.811713 GCTGCAGAAGTAATTTCTTTGATTCTT 59.188 33.333 20.43 0.00 43.68 2.52
428 429 7.176340 AGCTGCAGAAGTAATTTCTTTGATTCT 59.824 33.333 20.43 0.00 43.68 2.40
429 430 7.311408 AGCTGCAGAAGTAATTTCTTTGATTC 58.689 34.615 20.43 0.00 43.68 2.52
430 431 7.176340 AGAGCTGCAGAAGTAATTTCTTTGATT 59.824 33.333 20.43 0.00 43.68 2.57
431 432 6.658391 AGAGCTGCAGAAGTAATTTCTTTGAT 59.342 34.615 20.43 0.00 43.68 2.57
432 433 6.000219 AGAGCTGCAGAAGTAATTTCTTTGA 59.000 36.000 20.43 0.00 43.68 2.69
433 434 6.251655 AGAGCTGCAGAAGTAATTTCTTTG 57.748 37.500 20.43 1.88 43.68 2.77
434 435 6.294397 CCAAGAGCTGCAGAAGTAATTTCTTT 60.294 38.462 20.43 0.00 43.68 2.52
435 436 5.182760 CCAAGAGCTGCAGAAGTAATTTCTT 59.817 40.000 20.43 9.16 43.68 2.52
436 437 6.831046 GCCAAGAGCTGCAGAAGTAATTTCT 61.831 44.000 20.43 0.33 42.06 2.52
437 438 4.673841 GCCAAGAGCTGCAGAAGTAATTTC 60.674 45.833 20.43 0.00 38.99 2.17
438 439 3.192212 GCCAAGAGCTGCAGAAGTAATTT 59.808 43.478 20.43 0.00 38.99 1.82
439 440 2.751806 GCCAAGAGCTGCAGAAGTAATT 59.248 45.455 20.43 0.00 38.99 1.40
440 441 2.363683 GCCAAGAGCTGCAGAAGTAAT 58.636 47.619 20.43 0.00 38.99 1.89
441 442 1.813513 GCCAAGAGCTGCAGAAGTAA 58.186 50.000 20.43 0.00 38.99 2.24
442 443 0.390340 CGCCAAGAGCTGCAGAAGTA 60.390 55.000 20.43 0.00 40.39 2.24
443 444 1.670406 CGCCAAGAGCTGCAGAAGT 60.670 57.895 20.43 0.00 40.39 3.01
444 445 0.952497 TTCGCCAAGAGCTGCAGAAG 60.952 55.000 20.43 0.91 40.39 2.85
445 446 0.534877 TTTCGCCAAGAGCTGCAGAA 60.535 50.000 20.43 0.00 40.39 3.02
446 447 0.534877 TTTTCGCCAAGAGCTGCAGA 60.535 50.000 20.43 0.00 40.39 4.26
447 448 0.386478 GTTTTCGCCAAGAGCTGCAG 60.386 55.000 10.11 10.11 40.39 4.41
448 449 1.100463 TGTTTTCGCCAAGAGCTGCA 61.100 50.000 1.02 0.00 40.39 4.41
449 450 0.661483 GTGTTTTCGCCAAGAGCTGC 60.661 55.000 0.00 0.00 40.39 5.25
450 451 0.384725 CGTGTTTTCGCCAAGAGCTG 60.385 55.000 0.00 0.00 40.39 4.24
451 452 0.814010 ACGTGTTTTCGCCAAGAGCT 60.814 50.000 0.00 0.00 40.39 4.09
452 453 0.657368 CACGTGTTTTCGCCAAGAGC 60.657 55.000 7.58 0.00 38.52 4.09
453 454 0.657368 GCACGTGTTTTCGCCAAGAG 60.657 55.000 18.38 0.00 0.00 2.85
454 455 1.353804 GCACGTGTTTTCGCCAAGA 59.646 52.632 18.38 0.00 0.00 3.02
455 456 2.003443 CGCACGTGTTTTCGCCAAG 61.003 57.895 18.38 0.00 0.00 3.61
456 457 2.023461 CGCACGTGTTTTCGCCAA 59.977 55.556 18.38 0.00 0.00 4.52
457 458 4.599434 GCGCACGTGTTTTCGCCA 62.599 61.111 22.39 0.00 41.53 5.69
458 459 4.599434 TGCGCACGTGTTTTCGCC 62.599 61.111 27.33 14.76 46.14 5.54
459 460 3.375676 GTGCGCACGTGTTTTCGC 61.376 61.111 26.77 24.96 46.78 4.70
460 461 2.022069 TGTGCGCACGTGTTTTCG 59.978 55.556 33.22 13.00 0.00 3.46
479 485 4.101790 CGCACATGGTCAACGGCC 62.102 66.667 0.00 0.00 0.00 6.13
496 502 3.617263 GTCACTGATTGGAACGGTGTATC 59.383 47.826 0.00 0.00 42.88 2.24
500 506 1.877637 TGTCACTGATTGGAACGGTG 58.122 50.000 0.00 0.00 43.46 4.94
547 553 3.499737 CGCAAAAGGCTCGCGGAT 61.500 61.111 6.13 0.00 45.08 4.18
563 569 4.060900 GGGCATGCTGATATACCATATCG 58.939 47.826 18.92 0.00 0.00 2.92
574 580 1.426215 TGGATGTATGGGCATGCTGAT 59.574 47.619 18.92 12.03 37.94 2.90
581 587 4.961099 TCATTGAAATTGGATGTATGGGCA 59.039 37.500 0.00 0.00 0.00 5.36
582 588 5.291971 GTCATTGAAATTGGATGTATGGGC 58.708 41.667 0.00 0.00 0.00 5.36
583 589 5.067674 ACGTCATTGAAATTGGATGTATGGG 59.932 40.000 0.00 0.00 0.00 4.00
588 596 5.964958 AGAACGTCATTGAAATTGGATGT 57.035 34.783 0.00 0.00 0.00 3.06
624 632 3.326836 ACAACAAGAGAGCTAGCTTCC 57.673 47.619 20.42 13.55 0.00 3.46
631 639 4.078639 ACAAGCTAACAACAAGAGAGCT 57.921 40.909 0.00 0.00 45.23 4.09
632 640 4.531332 CAACAAGCTAACAACAAGAGAGC 58.469 43.478 0.00 0.00 0.00 4.09
656 664 2.761786 ATAGCTACCCCCTTGTACGA 57.238 50.000 0.00 0.00 0.00 3.43
678 686 0.921347 CGCGAGTTTGTAATCTCCGG 59.079 55.000 0.00 0.00 0.00 5.14
697 705 1.165270 CTGGGTTCGGATTGGTGTTC 58.835 55.000 0.00 0.00 0.00 3.18
701 709 1.189524 TCGACTGGGTTCGGATTGGT 61.190 55.000 0.00 0.00 39.58 3.67
732 740 5.163612 CGTGAGATAGAGTGTCATTGAGGAA 60.164 44.000 0.00 0.00 32.14 3.36
735 743 5.242069 ACGTGAGATAGAGTGTCATTGAG 57.758 43.478 0.00 0.00 32.14 3.02
739 747 4.260825 CGCTTACGTGAGATAGAGTGTCAT 60.261 45.833 12.13 0.00 32.14 3.06
814 822 4.161333 GCGTTTGGATTTCAGATTGTCAG 58.839 43.478 0.00 0.00 0.00 3.51
815 823 3.364864 CGCGTTTGGATTTCAGATTGTCA 60.365 43.478 0.00 0.00 0.00 3.58
816 824 3.163594 CGCGTTTGGATTTCAGATTGTC 58.836 45.455 0.00 0.00 0.00 3.18
817 825 2.095263 CCGCGTTTGGATTTCAGATTGT 60.095 45.455 4.92 0.00 0.00 2.71
818 826 2.161410 TCCGCGTTTGGATTTCAGATTG 59.839 45.455 4.92 0.00 31.53 2.67
819 827 2.432444 TCCGCGTTTGGATTTCAGATT 58.568 42.857 4.92 0.00 31.53 2.40
820 828 2.107950 TCCGCGTTTGGATTTCAGAT 57.892 45.000 4.92 0.00 31.53 2.90
821 829 1.533731 GTTCCGCGTTTGGATTTCAGA 59.466 47.619 4.92 0.00 38.00 3.27
895 903 3.070159 GTCATTGCCAGCCTGTAGATCTA 59.930 47.826 0.00 0.00 0.00 1.98
896 904 2.121948 TCATTGCCAGCCTGTAGATCT 58.878 47.619 0.00 0.00 0.00 2.75
897 905 2.216898 GTCATTGCCAGCCTGTAGATC 58.783 52.381 0.00 0.00 0.00 2.75
898 906 1.561076 TGTCATTGCCAGCCTGTAGAT 59.439 47.619 0.00 0.00 0.00 1.98
899 907 0.983467 TGTCATTGCCAGCCTGTAGA 59.017 50.000 0.00 0.00 0.00 2.59
900 908 1.089920 GTGTCATTGCCAGCCTGTAG 58.910 55.000 0.00 0.00 0.00 2.74
901 909 0.673333 CGTGTCATTGCCAGCCTGTA 60.673 55.000 0.00 0.00 0.00 2.74
902 910 1.968017 CGTGTCATTGCCAGCCTGT 60.968 57.895 0.00 0.00 0.00 4.00
903 911 1.642037 CTCGTGTCATTGCCAGCCTG 61.642 60.000 0.00 0.00 0.00 4.85
904 912 1.376424 CTCGTGTCATTGCCAGCCT 60.376 57.895 0.00 0.00 0.00 4.58
905 913 1.364626 CTCTCGTGTCATTGCCAGCC 61.365 60.000 0.00 0.00 0.00 4.85
906 914 1.975363 GCTCTCGTGTCATTGCCAGC 61.975 60.000 0.00 0.00 0.00 4.85
907 915 0.390866 AGCTCTCGTGTCATTGCCAG 60.391 55.000 0.00 0.00 0.00 4.85
908 916 0.390340 GAGCTCTCGTGTCATTGCCA 60.390 55.000 6.43 0.00 0.00 4.92
909 917 0.108424 AGAGCTCTCGTGTCATTGCC 60.108 55.000 11.45 0.00 34.09 4.52
910 918 0.997932 CAGAGCTCTCGTGTCATTGC 59.002 55.000 14.96 0.00 34.09 3.56
911 919 0.997932 GCAGAGCTCTCGTGTCATTG 59.002 55.000 14.96 0.88 34.09 2.82
912 920 0.894141 AGCAGAGCTCTCGTGTCATT 59.106 50.000 14.96 0.00 30.62 2.57
956 964 1.200948 GAATGTCAGCCTTTCAGGTGC 59.799 52.381 0.00 0.00 37.80 5.01
969 977 2.736721 GACAACTAAGCTGCGAATGTCA 59.263 45.455 16.34 0.00 36.58 3.58
976 984 1.639298 GCCTGGACAACTAAGCTGCG 61.639 60.000 0.00 0.00 0.00 5.18
1233 1241 0.461163 CCGACATCCATGTTACCGCA 60.461 55.000 0.00 0.00 41.95 5.69
1388 1402 5.186409 ACAAACAGAGAAATAGGTACCGCTA 59.814 40.000 6.18 0.00 0.00 4.26
1396 1410 5.296780 ACACACACACAAACAGAGAAATAGG 59.703 40.000 0.00 0.00 0.00 2.57
1409 1427 2.227626 CTCAACCAACACACACACACAA 59.772 45.455 0.00 0.00 0.00 3.33
1509 2960 6.631016 AGAAATAGCTGATCACTACGTCAAA 58.369 36.000 0.00 0.00 0.00 2.69
1530 2981 5.278120 CCACACACGTATCCGTCATATAGAA 60.278 44.000 0.00 0.00 46.28 2.10
1590 3041 4.408921 AGCACATAGTCCTGCCAGTTTATA 59.591 41.667 0.00 0.00 33.57 0.98
1591 3042 3.200825 AGCACATAGTCCTGCCAGTTTAT 59.799 43.478 0.00 0.00 33.57 1.40
1711 3277 0.740737 CTTAAAGGGCCAGCAATCGG 59.259 55.000 6.18 0.00 0.00 4.18
1743 3309 1.860641 TCAGTATCTTCGGCCCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
1748 3314 3.863041 AGTTCTTTCAGTATCTTCGGCC 58.137 45.455 0.00 0.00 0.00 6.13
1760 3326 0.984230 ATCTGGGCCGAGTTCTTTCA 59.016 50.000 15.09 0.00 0.00 2.69
1777 3343 4.142988 TGCCGAAATTCAGACGTAAACATC 60.143 41.667 0.00 0.00 0.00 3.06
1779 3345 3.132160 TGCCGAAATTCAGACGTAAACA 58.868 40.909 0.00 0.00 0.00 2.83
1790 3400 1.201414 ACACCCGATTTGCCGAAATTC 59.799 47.619 0.00 0.00 31.58 2.17
1797 3407 1.095807 GGCTCTACACCCGATTTGCC 61.096 60.000 0.00 0.00 0.00 4.52
1965 3576 2.165167 ACGGGTCTCGAGTTTGATACA 58.835 47.619 13.13 0.00 42.43 2.29
1997 3608 3.072468 TACTGGTTAGCGCGGCCT 61.072 61.111 8.83 0.00 0.00 5.19
2310 4012 2.159435 CGATTGGGGAAAATGTTCGTCC 60.159 50.000 0.96 0.96 34.28 4.79
2323 4025 3.509575 TGGAAAAAGTTCATCGATTGGGG 59.490 43.478 0.00 0.00 35.25 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.