>input_sequence_82171
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-----------------------------------------------ATGGGACCCGAGCTGGCGCTCGGCATCGAGGGC
GGCGAGCTCCCGCCGGGGTCGGGGATGGAGGGCCGGTGGCCGGTGGAACGGCTGGTCTGCTTCATCGGTTTCACCACCGC
GTGCATGGCAACCTCCGTGGCCGTCTACACGCTGCCCACCGGCATCTTCGACGACCACAAGCTCGCCTACTACGTCTCCG
TCGCCTCCGCCGGCTTTGTTGGCTTCGCGGAGGTGTTCGCTGCGGTAACATGGATGTCGGGCTCGGCCGGCGTCGGCGAC
GACCACCCACGCAGCCAAGCACGCCGATGCGTTTTGTGTGCCTCGCTTCTGCCACTGGCGTTCCTGGCAGGGCTCGGTGG
AGTGCGCATACTTGTCAAGTA------A----------------------------------------------------
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>chr2D_1_TraesCS2D01G177800
ATTACTTTAGTTGAGTTCGTGCCGAACCACGGCGAATATGGGCCGATTTGTGCCAATATCGGGCCGATTTATCGCCGAAA
ATGGGTCGAAAAGCGGTCACATTTTTGCAAAAAATGGGCCGATATCGGCGCCTGGGGCCACCTAGGGGAGGCGGCTGGGA
ACCCAATCGACCCCAACGCTGTTTTTAGCGCCGGCTCGTCCCCAGACGGCGATTTTTAAGCCTCCTCGGGGGGCCAACGG
CTGGAGATGCTCTAAGACTTAACTCCACTAGTCTTTGTTGTTCTCGCGTTGAGTCAAGTATTTATGCTACCAAATGTCTA
ACTCGATAAGAGTTTCAAACTTTTTTTTTGCAAGGGCAAGAGTTTACAGGCCTACTATCAATCAAGCCCTAAGTGAAAAA
CTGAAAATTAGGAAAAGGAAATTGGGAAAGAATCAAAGAAATTACTTCTGCAGCTCTTGGCGAAAACACGTG-----CGC
ACACGGCCGTTGACCATGTGCGATACACCGTTCCAATCAGTGACATGACAGACCGATAACGACGGGCCAAACATCCGCGA
GCCTTTTGCGATATGGTATATCAGCATGC--CCATACATCCAATTTCAATGACGTTCTATCTCACGTAGGCGGAAGCTAG
CTCTCTTGTTGTTAGCTTGTTGCTCGTACAAGGGGGTAGCTATACCCGGAGATTACAAACTCGCGAACACCAATCCGAAC
CCAGTCGAGCTTTGTTGATTTCCTCAATGACACTCTATCTCACGTAAGCGGAGCCTGTCGCTCTCGCACATATTGATATG
CCACGCCTATGTCTACGTAACCTGACAATCTGAAATCCAAACGCGGAACCTCGAATCCTCGATCACGGCTTATATATTGT
CCTCCGGCATCGTCGACCTGCATAGATCTACAGGCTGGCAATGACACGAGAGCTCTGCTAGCTCTACTGAATTCCGATCC
TTAGCACCTGAAAGGCTGACATTCGCAGCTTAGTTGTCCAGGCCGGAATGGGACCCGAGCTGGCGCTCGGCATCGAGGGC
GGCGAGCTCCCGCCGGGGTCGGGGATGGAGGGCCGGTGGCCGGTGGAACGGCTGGTCTGCTTCATCGGTTTCACCACCGC
GTGCATGGCAACCTCCGTGGCCGTCTACACGCTGCCCACCGGCATCTTCGACGACCACAAGCTCGCCTACTACGTCTCCG
TCGCCTCCGCCGGCTTTGTTGGCTTCGCGGAGGTGTTCGCTGCGGTAACATGGATGTCGGGCTCGGCCGGCGTCGGCGAC
GACCACCCACGCAGCCAAGCACGCCGATGCGTTTTGTGTGCCTCGCTTCTGCCACTGGCGTTCCTGGCAGGGCTCGGTGG
AGTGCGCATACTTGTCAAGTA------AGAGCTGCTGGGCCTAGCGGTACCTATTTCTC----TGTTTGTGTGTGTGTGT
TGGTTGAGATTGTTA-----GT----------------------------------------------------------
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----------ATTTGTGTGCACATGAGCATTCGATTCATGGAAGATTCGTGTAGTGCTCCTACCCTTTGTGTTGTGATCT
TTGACGTAGTGATCAGCTATTTCTATATGACGGATACGTGTGTGGTGTGTAATAATTCAAACTGGGTTATTTGGTTTTAG
TATAAACTGGCAGGACTATGTGCTTGTGCTTCTCAAACTTAAGCTTTTGCACGTGCTTATTA------------------
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-----------------TATGTAGGATTTATATAGAGATTATTTGACATGTTCTCCATGCTGCATGACCTGATCAACCGA
TTGCTGGCCCTTTAAGACGATACTCTCGTGAAGGGCCGAAGATACTGAAAGAACTCGGCCCAGATGTTT-----------
---------------------------------ACGTCTGAATTTCGGCAAATCGGGTGTAGAGCCAGGCGGTTCCTATT
TGGCGCTTCGGGCGCCTATTATAGGTCATTTTGCAAACAGGCACCTGAAGAGCACACCCTTTGCTGCGAGCTGGGCCGGC
CCATTTTGCGTTTTTCTTTTATCTGTTTAAAGTGCAAAAAA-GGTGCACGGGCGATGTATCAAACTCGAGACCCGTACAG
TCAGAGCAGGCCGCGCTAACCAGTAGGGACATCGCACACTTGTGCATAGTAACTTCTTTTGTTCTTTTATTCTTTCTCCA
GTTCACTT------TTCTTTTTCCTTTTTTCTTT--------------------TTTTCCTTTTTCTATCTATTTCTTTG
CTTAAATGCGTGATTTTAAATCGATGAACTTCTTCTTCAAAATTGACGAACTTGTAAAAAATTGGTGCACTTTTTTCAAA
ATTTGTGTCC--TTTTTTAAACATTTTGAATGAACTTTTT----------------------------------------
CCTAAATTGTGAAC--TTTTTTAAAAATTGATGATTTTTTTTT---------------------CAAATTTGATGAACTT
GTTTTCAAAATGGACGAACATTTTC-CCCAATCGATGAACTTTTTCCAAATTTGATGAACTTGTTTTCAAAATCAAC
>chr2A_453
GCTCTTGA------------------------------------------------------------------------
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-------------------------------------------------------------GAAAACACGTGCACGCCGC
ACACAGCCGTTGGCCGTGTGCCATATACCGTTCCAATCAGTGACATGACAGACCGATAACGACGGGCCAAACGTCCGCGA
GCCTTTTGTGATATGGTATGTCAGCACATGTCCATGCATCCAATTTCAGTGACGTTCTATCTCACGTAGGCCGAAGCT--
CTCTCTTGTTGTTGGCTTGTTGCCCGTACAAGGGGGTAGCTATACTCGGAGATTACAAACTCGCAAACGCCAATCCGAAC
CCAGTCGAGCTTTGTTGATCTCTTCAGTGACACTCTATCTCACGTAAGCGGAGCCTGTCGCTCTCGCACATATTGATATG
CCACGCCTATGTCTACGTAAC--------CTGAAATCCAAACGCGGAACCTCGAATCCTCGATCACGGCTTATATATTGT
CCTCCGGCATCGTCGACCTGCA------------------ATGACACGAGAGCTCTGCTAGCTCTACTGAATTCCGATCC
TTACCACCTGAAAGGCCGACATTTGCAGCTTAGTTGTCCAGGCCGGAATGGGACCCGAGCTGGCGCTCGGCACCGAGGGC
GGCGAGCTCCCGCTGGGGTCGGGGATGGAGGGCCGGTGGCCGGTGGAACGGCTGGTCTGCTTCATCGGTTTCACCACCGC
GTGCATGGCAACCTCCGTGGCCGTCTACACGCTGCCCACCGGCATCTTCGACGACCACAAGCTCGCCTACTACGTCTCCG
TCGCCTCCGCCGGCTTTGTTGGCTTGGCGGAGGTGTTTGCGGCGGTAACATGGATGTCGGGCTCGGCCGGCGTCGCCGAC
AACCACCCACACGGCCAAGCACGCCGATGCGTTTTGTGTGCCTCACTTCTGCCACTGGCGTTCCTGGCAGGGCTCGGTGG
AGTGCGCATGCTTGTCAAGTA------AGACCTGCTCGGTGGAGTGCTCTGTTTGTGTGCGTGTGTGTGTGTGTGTGTAT
TGCTTGAGATTGTTATAGTTGT----------------------------------------------------------
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----------ATTTGTGTGCACATGAGCATTCGATTCATGGAAGATTCGTGTAGTGCTCCTACCCTTTGTGTTGTGATCG
TTGACGTAGTGATCAGCTATCTCTATATGACGGATACGCGTGCGGTGTGTAATAATTTAAACT-GGTTATTTGGTTTTAG
--TAAACTGGCAGGACTATGTGCGTGTGCTTCTCAAACTTAAGCTTTTGCACGTGCTTATTA------------------
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-----------------TAT-TAGGATTTATATAGAGATTATTTGACATGTTCTCCATGTTGCATGACCTAATCAATTGA
TTGCTCGCCCTTTAAGACGATACTCTCGCGAAGAGCCGAAGATACCGAAAGAACTCGGCCGG-ACGTTTTTGTCAGTCAA
CGTGGTGTGGCATACGTCCGCGGATGAGTGCACACGTCTAAATTTCCACAAATCGGGTGTAAAGCCGGGCGGTTCCTATC
TGGCGCTTCAGCCGCCCA--ATAGGTCATTTTGCAAACAGGCACCTGAAGCACACACCCTTTGATGCGAGCTGGGCCGGC
CCATTTTGTGTTTTTCTTTTATCTGTTTAAAGTGCAAAAAATGGTGCGCGGGCGACGTATCAAACTCGAGACCCGTACAT
TCATAGCGGGCCGCGCTAACCACTAGGGACATCGCACACTTGTGCATAGTAACTTCTTTCGTTCTTTTATTTTTTCTCCA
GTTCGCTTTTCTTATTCTTTTTTCTTTTTTCTGTTCATATTCTATTTTCTGTTCTTTTCCTTTTTCTATTTATTTCTTTG
CTTAAATGCGTGAT-TTAAATCTACGAACTTTTTCTTCAGAATTGATGAACTTGTCAAAAATTGGTGAACTTTTTTCAAA
AGTTGTGA-C--TTTTTTAAACATTTTGAATGAACTTTTT----------------------------------------
TCAAATTTGATGAACTTGTTTTCAAAATTGACAAACATTTTTTCCCAACCAATGAACTTTTTTTCAAATTTGATGAACTT
GTTTTCAAAATTGACGAACATTTTTTCCCAACCAATGAACTTTTTTCAAATTTGATGAACTTGTTTACAAATTCGAC
>chr2B_1086
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----------------------------------------------------TGGTCTGCTTCATCGGTTTCACCACTGC
GTGCATGGAAACCTCCGTGGCCGTCTACACGCTGCCCACCGGCATCTTCGACGACCACAAGCTCGCCTACTACGTCTCCG
TCGCCTCCGCCGGCTTTGTTGGCTTCGCGGAGGTGTTCGCCGCGGTTACATGGATGTCGGGCTCGGCCGGCGTCGGCAAC
GACCACCCACACGGCCAAGCACGCCGATGCGTTTTGTGTGCCTCACTTCTGCCACTGGCGTTCCTGGCAGGGCTTGGTGG
AGTGCGCATACTTGTCAAGTACTCGCAAGAGCTGCTGGGCCGAGCGGTAGCTATTTCTC------TGTTTGTGTGTGTGT
TGGCTGAGATTGTTA-----GTACTAGAGGATACCCCGCGCGTTACAGCGGGAAATTCGGCAATGATTTAAAGAGTTAGG
AAAAATTGGATATGGGTAATGCGTGACATTCTTTAGATTAATATTTTAGCGCAAAAAAGTAAACAGTAATCCATCTTCTC
AATTCTGAGCTCATCAATCTATTGAAATTGCAGGGTACACACTATAGCAAATTCAGATCCAGAGGCTTTGAGAAATATGT
CGTTGTGATTGACAGTGAGTAGGGTAGTAGAACAACAGATACCGATAACTTACACTAAGAGAATAAGGAAGCGAGCAACA
CCATATTTGACCAGGTATAATGTATAAGAAAACTAACCGATACCGATAGGGGATTCATACCCTTGTTCCCAATAGAATAC
CTGCATGAAATAGGTTAAGCAGGGAATGACTACAGGTAAGAACAAAACTGAATTGCTATATGACAACCTGACTTGTTGCA
GATCTAGAAATAATAAAACTGACAAAAAAATGGGTTAAGTATATTTGGAGACATATCTTTCCTACCATATGCTTTGCATG
GCAAGAGAGATAGCAGGATCCTACAATCAAGAAATTGAGAAATAAACGTGGGTTCCTTTGTCCCGATTCTTTTGTTCTGA
AAGGTCGGAACAGAAAAACCTTAATGTGGAATCCAACATGTAGCAGCTGGAGTGCGCCCCCATCCCTTGCGTACGCGTTA
CCAACCCTTCCTCCCAGACACTGGCTGGGGCACTCGCGCTCGGCCTCGACCATCCGCGTGTAGGCGTACCCGGTGCCGGC
GTCCGTGCCGTGGAGGCCGCAGCAGTCGCGACGACCACGCACTGGTCCGTGAGCAGAGCACCACTATGAGGGCGCCTTTC
TTGGGGAGCATGCCGGCCGTGAGCTCGAAGATCTTGACCCGCGCCAGCGACTTGCCGAGGGAGCAGTGCTCGTCGTAGAC
CTGACCAATCGGAATGACGCGAGTTGTATGGAGAGAGAGGTAGAAATAGAGGGAAGATGAGAAGGATTAGTGGGGACGAA
ACAACGGAGATTTATTCGTTGAGGGAGATGAAGAAACCTAGTTGTCCGCATATTAATTCCCATTGTAATCAAAACAGCAG
TTTCCTCGTTCTCCTCCAGTGGAGTATTTGCGATCCTATATTTATGGTTATCGGCGGTGCGTGTTGCGTATATTTGTTGG
GCATAGGCTAGCGGATGGACGATTTGCATGCAGAGTCTAACGACATGTTTTTTTTTTTTTGCTATAAATGCTAATTATTA
TTTCTTGCACGCAGGATGCTATCAAAGTTTATGCTCGCGATTGTTAAAATGGAAGGCTGCATGTCTCACGCTGGATTGGT
GAAGAAGTATGACATGGCAGGCTGCTGATGTGGACGGGCTGCATGTCAAGAGAAATCAAATAGTGGGGAGCTTCTATTTA
GATATAGTAGATTTGTGTGCACATGAGCATTCGGTTCATGGAAGATTCGTGTAGTGCTCCTACCCTTTGTGTTGTGATCG
TTGACGTAGTGATCAGCTATCTCTC--TGACGGATACGTGTGTGGTGTGTAATAATTCAAACTGGGTTATTTGGTTTCAG
--TAAACTGGCAGGACTATGTGCTTGTGCTTCTCAAACTTAAGCTTTTGCACGTGCTTATTACTCCCTCCGTCCGAAATC
ACTTGTCATCAAAATGGTTTAAAATGGATGTATCTAGAACTAAAATACATCTAGATACATCCATTTCAATGACAAGTATT
TCCGGACGGAGGGAGTATATGTAGGATTTCTATAGAGATTATTTTACATGTTGTCAATGCTACATGATCTGATCAATCGA
TTGCTGGCCCTTTAAGACGATACTCTCACCAAGAGCGGAAGGTACCGAAAGAACTCGGTCCAAACGTTTTTGTCATCCAA
AGCGGTGTCGCATACGTCTGTGGATGAGTGCACAGGTCTAAATTTCTGC-AATCGGGTGTAAAGCCGGGCGGTTCTTATT
TGGCGCTTCAGGCGCCTATTATAGGTCATTTTGCAAATAGGCACCTGAAGCGCACACCCTTTGCTGCGCGTTGGGCCGGC
CCATTTTGCATTTTTCTTTTATCTGTTTAAAGTGCAAAAAATGGTACACGGGCAACGTATCAAACTCGAGGCCCGTACAT
TCATAGCGGGCCGCGCTAACCAGTAGGGACATCGCACACTTGTGCATAGTAACTTCTTTTGTTCTTTTATTCTTTCTCCA
GTTTGTTTTTCTTTTTCTTTTTTCTCTTTTCTGTTC------------------TTTTCCTTTTTCTATCTATTTCTTTG
CTTAAATGCGTGATTTTAAATCGATGAA---CTTCTTCAAAATTGACGAACTTGTAAAAAATTTGTGAACTTTTTTCAAA
ATTTGTGA-CCTTTTTTTAAATATTTTGAATGTACTTTTTACTATATTGTGAACTTTTTAAAAAAATAGATGATTTTTTT
TCAAATTTGATGAACTTGTTTTCAAAATCGACAAACATTTTTC---------------------CCC-------------
------------------------------ATCGATGAACTTTTTCCAAATTTGTTGAACTTGTTTTCAAAATCGAC
>SNPs
SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
----S-------S--S-----S---S----------------------------------------------S-------
--------S----------S------SSS------S------------S----------------------S------SS
-------------S---------S---------------------S------------------S---S-----------
-------------------S--S---S-----------------------------------------------------
---------------------SSSSSSSS---------------------------------------------------
----------------------SSSSSSSSSSSSSSSSSS----------------------------------------
---S------------S------S------------------------------------------------S-------
-------------S------------------------------------------------------------------
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----------------------------------------S---------------------------------------
----------S-S-------------------------------S-----------------------------------
-----------------------------------------S-------S----------------S-------------
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-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------------
SS------------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
----------------------------S----S-----------S----------------S-S---------------
---------------------------------------S------S--------------S----S-------------
---------S----------------------------------------S-----------------------------
-------------------------------------------------------S-----------------------S
---S---S------------------------------------------------------------------------
----S-----------------S---------S-----------------------------------------------
-------------------------------------------------------------------S------------
-------SS-----------------------------------------------------------------------
S-S--S---SSS-S---S----S--------SS-SSS-------------------------------------------
-----------S------------S-------------------------------------------------S--
>forward_906
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------GCATCGTCGACCTGCATAGA------------------------------------------------------
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>reverse_3277
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----------------------------------------------------------------------------CCGA
TTGCTGGCCCTTTAAG----------------------------------------------------------------
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