Multiple sequence alignment - TraesCS2D01G172500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G172500 chr2D 100.000 2772 0 0 1 2772 116556463 116553692 0.000000e+00 5120.0
1 TraesCS2D01G172500 chr2D 100.000 324 0 0 3016 3339 116553448 116553125 1.710000e-167 599.0
2 TraesCS2D01G172500 chr2D 86.025 322 41 4 3020 3339 55609017 55609336 3.190000e-90 342.0
3 TraesCS2D01G172500 chr2D 86.532 297 37 3 3034 3329 310723757 310724051 1.160000e-84 324.0
4 TraesCS2D01G172500 chr2B 91.567 1423 70 29 589 2003 166756320 166754940 0.000000e+00 1917.0
5 TraesCS2D01G172500 chr2B 83.499 806 81 23 1997 2767 166749739 166748951 0.000000e+00 704.0
6 TraesCS2D01G172500 chr2A 85.526 1064 84 41 1741 2762 117752140 117751105 0.000000e+00 1048.0
7 TraesCS2D01G172500 chr2A 88.727 825 57 16 931 1745 117757240 117756442 0.000000e+00 976.0
8 TraesCS2D01G172500 chr2A 85.714 322 41 5 3020 3339 427302378 427302696 5.340000e-88 335.0
9 TraesCS2D01G172500 chr2A 94.156 154 5 2 778 930 117757596 117757446 7.200000e-57 231.0
10 TraesCS2D01G172500 chr2A 85.128 195 19 4 592 785 117758523 117758338 1.220000e-44 191.0
11 TraesCS2D01G172500 chr2A 81.513 119 22 0 30 148 101007097 101006979 7.620000e-17 99.0
12 TraesCS2D01G172500 chr7D 98.252 515 9 0 1 515 465900498 465901012 0.000000e+00 902.0
13 TraesCS2D01G172500 chr7D 84.906 318 43 4 3026 3339 64492369 64492053 1.930000e-82 316.0
14 TraesCS2D01G172500 chr7D 83.590 195 23 8 2577 2764 191615390 191615198 1.230000e-39 174.0
15 TraesCS2D01G172500 chr7D 94.737 38 2 0 564 601 52522589 52522552 3.600000e-05 60.2
16 TraesCS2D01G172500 chr3D 97.471 514 13 0 1 514 26124971 26125484 0.000000e+00 878.0
17 TraesCS2D01G172500 chr3D 80.206 485 68 22 1855 2318 577491605 577491128 4.130000e-89 339.0
18 TraesCS2D01G172500 chr3D 85.765 281 34 4 1585 1859 577491977 577491697 3.260000e-75 292.0
19 TraesCS2D01G172500 chr3D 90.732 205 19 0 1347 1551 577492287 577492083 1.180000e-69 274.0
20 TraesCS2D01G172500 chr3D 84.836 244 22 3 997 1240 577492625 577492397 7.200000e-57 231.0
21 TraesCS2D01G172500 chr3D 86.164 159 22 0 1346 1504 577451319 577451161 4.430000e-39 172.0
22 TraesCS2D01G172500 chr3D 100.000 30 0 0 517 546 26125505 26125534 4.650000e-04 56.5
23 TraesCS2D01G172500 chr3B 79.894 567 83 22 1855 2404 770659733 770659181 1.450000e-103 387.0
24 TraesCS2D01G172500 chr3B 85.016 307 42 4 3034 3339 74767396 74767093 3.240000e-80 309.0
25 TraesCS2D01G172500 chr3B 89.450 218 23 0 1347 1564 770660421 770660204 3.280000e-70 276.0
26 TraesCS2D01G172500 chr3B 84.342 281 38 2 1585 1859 770660114 770659834 1.530000e-68 270.0
27 TraesCS2D01G172500 chr3B 97.297 37 1 0 564 600 629549498 629549462 2.780000e-06 63.9
28 TraesCS2D01G172500 chr3B 94.872 39 1 1 564 602 676888998 676888961 3.600000e-05 60.2
29 TraesCS2D01G172500 chr3A 79.566 553 82 21 1855 2388 713103613 713103073 1.890000e-97 366.0
30 TraesCS2D01G172500 chr3A 89.754 244 25 0 997 1240 713104621 713104378 2.500000e-81 313.0
31 TraesCS2D01G172500 chr3A 90.367 218 21 0 1347 1564 713104294 713104077 1.520000e-73 287.0
32 TraesCS2D01G172500 chr3A 77.033 209 37 9 2560 2761 640521754 640521958 3.520000e-20 110.0
33 TraesCS2D01G172500 chr5B 85.714 315 41 3 3016 3329 270760579 270760890 2.480000e-86 329.0
34 TraesCS2D01G172500 chr1B 86.230 305 39 3 3016 3319 612225580 612225882 8.930000e-86 327.0
35 TraesCS2D01G172500 chr6D 83.742 326 51 2 3016 3339 455970761 455971086 1.160000e-79 307.0
36 TraesCS2D01G172500 chr6D 85.714 112 16 0 1447 1558 128471495 128471606 5.850000e-23 119.0
37 TraesCS2D01G172500 chr6D 94.737 38 2 0 564 601 7278652 7278615 3.600000e-05 60.2
38 TraesCS2D01G172500 chr1A 84.494 316 41 7 3026 3338 374281538 374281228 4.190000e-79 305.0
39 TraesCS2D01G172500 chr1A 94.737 38 2 0 564 601 548517948 548517911 3.600000e-05 60.2
40 TraesCS2D01G172500 chr6A 95.506 89 4 0 25 113 500101165 500101253 3.470000e-30 143.0
41 TraesCS2D01G172500 chr7B 83.908 87 10 4 53 137 62399995 62400079 2.760000e-11 80.5
42 TraesCS2D01G172500 chr4B 85.915 71 10 0 1449 1519 193563949 193563879 3.570000e-10 76.8
43 TraesCS2D01G172500 chr4B 94.872 39 1 1 564 602 416621675 416621638 3.600000e-05 60.2
44 TraesCS2D01G172500 chr4A 100.000 35 0 0 564 598 116380735 116380769 7.730000e-07 65.8
45 TraesCS2D01G172500 chr4A 97.222 36 1 0 564 599 63104227 63104262 1.000000e-05 62.1
46 TraesCS2D01G172500 chr5A 97.222 36 0 1 564 599 13356226 13356260 3.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G172500 chr2D 116553125 116556463 3338 True 2859.50 5120 100.000000 1 3339 2 chr2D.!!$R1 3338
1 TraesCS2D01G172500 chr2B 166754940 166756320 1380 True 1917.00 1917 91.567000 589 2003 1 chr2B.!!$R2 1414
2 TraesCS2D01G172500 chr2B 166748951 166749739 788 True 704.00 704 83.499000 1997 2767 1 chr2B.!!$R1 770
3 TraesCS2D01G172500 chr2A 117751105 117752140 1035 True 1048.00 1048 85.526000 1741 2762 1 chr2A.!!$R2 1021
4 TraesCS2D01G172500 chr2A 117756442 117758523 2081 True 466.00 976 89.337000 592 1745 3 chr2A.!!$R3 1153
5 TraesCS2D01G172500 chr7D 465900498 465901012 514 False 902.00 902 98.252000 1 515 1 chr7D.!!$F1 514
6 TraesCS2D01G172500 chr3D 26124971 26125534 563 False 467.25 878 98.735500 1 546 2 chr3D.!!$F1 545
7 TraesCS2D01G172500 chr3D 577491128 577492625 1497 True 284.00 339 85.384750 997 2318 4 chr3D.!!$R2 1321
8 TraesCS2D01G172500 chr3B 770659181 770660421 1240 True 311.00 387 84.562000 1347 2404 3 chr3B.!!$R4 1057
9 TraesCS2D01G172500 chr3A 713103073 713104621 1548 True 322.00 366 86.562333 997 2388 3 chr3A.!!$R1 1391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1939 0.396435 ATCCACGCTTGACTCCAACA 59.604 50.0 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2540 3814 0.177141 CTCGCGAACCCCTCCATTTA 59.823 55.0 11.33 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.624838 CAACACTTGCATCTGGGTTCTT 59.375 45.455 0.00 0.00 0.00 2.52
293 294 2.024941 CCCTAGGGCTTCTTGATTTGGT 60.025 50.000 16.90 0.00 0.00 3.67
453 454 0.608035 CAACAGGGCCATAACACGGT 60.608 55.000 6.18 0.00 0.00 4.83
546 565 4.504858 CTGAGTCGCCTAAACCTAACATT 58.495 43.478 0.00 0.00 0.00 2.71
547 566 4.901868 TGAGTCGCCTAAACCTAACATTT 58.098 39.130 0.00 0.00 0.00 2.32
548 567 5.310451 TGAGTCGCCTAAACCTAACATTTT 58.690 37.500 0.00 0.00 0.00 1.82
549 568 5.766174 TGAGTCGCCTAAACCTAACATTTTT 59.234 36.000 0.00 0.00 0.00 1.94
567 586 3.608316 TTTTAACATGCATTCCCCTGC 57.392 42.857 0.00 0.00 42.62 4.85
575 594 1.260544 GCATTCCCCTGCAAGAAAGT 58.739 50.000 0.00 0.00 41.87 2.66
576 595 1.620323 GCATTCCCCTGCAAGAAAGTT 59.380 47.619 0.00 0.00 41.87 2.66
577 596 2.825532 GCATTCCCCTGCAAGAAAGTTA 59.174 45.455 0.00 0.00 41.87 2.24
578 597 3.258123 GCATTCCCCTGCAAGAAAGTTAA 59.742 43.478 0.00 0.00 41.87 2.01
579 598 4.262420 GCATTCCCCTGCAAGAAAGTTAAA 60.262 41.667 0.00 0.00 41.87 1.52
580 599 5.473039 CATTCCCCTGCAAGAAAGTTAAAG 58.527 41.667 0.00 0.00 34.07 1.85
581 600 4.178956 TCCCCTGCAAGAAAGTTAAAGT 57.821 40.909 0.00 0.00 34.07 2.66
582 601 3.888930 TCCCCTGCAAGAAAGTTAAAGTG 59.111 43.478 0.00 0.00 34.07 3.16
583 602 3.636764 CCCCTGCAAGAAAGTTAAAGTGT 59.363 43.478 0.00 0.00 34.07 3.55
584 603 4.499696 CCCCTGCAAGAAAGTTAAAGTGTG 60.500 45.833 0.00 0.00 34.07 3.82
585 604 4.097892 CCCTGCAAGAAAGTTAAAGTGTGT 59.902 41.667 0.00 0.00 34.07 3.72
586 605 5.394115 CCCTGCAAGAAAGTTAAAGTGTGTT 60.394 40.000 0.00 0.00 34.07 3.32
587 606 5.516339 CCTGCAAGAAAGTTAAAGTGTGTTG 59.484 40.000 0.00 0.00 34.07 3.33
588 607 6.019779 TGCAAGAAAGTTAAAGTGTGTTGT 57.980 33.333 0.00 0.00 0.00 3.32
589 608 6.090129 TGCAAGAAAGTTAAAGTGTGTTGTC 58.910 36.000 0.00 0.00 0.00 3.18
590 609 6.072175 TGCAAGAAAGTTAAAGTGTGTTGTCT 60.072 34.615 0.00 0.00 0.00 3.41
591 610 6.251376 GCAAGAAAGTTAAAGTGTGTTGTCTG 59.749 38.462 0.00 0.00 0.00 3.51
592 611 7.305474 CAAGAAAGTTAAAGTGTGTTGTCTGT 58.695 34.615 0.00 0.00 0.00 3.41
593 612 7.448748 AGAAAGTTAAAGTGTGTTGTCTGTT 57.551 32.000 0.00 0.00 0.00 3.16
594 613 7.882179 AGAAAGTTAAAGTGTGTTGTCTGTTT 58.118 30.769 0.00 0.00 0.00 2.83
595 614 9.005777 AGAAAGTTAAAGTGTGTTGTCTGTTTA 57.994 29.630 0.00 0.00 0.00 2.01
612 631 7.982354 TGTCTGTTTAAATTTCCGGTTTTCAAT 59.018 29.630 0.00 0.00 0.00 2.57
683 702 3.794737 CATGGACTGCTGTATGCCT 57.205 52.632 0.00 0.00 42.00 4.75
684 703 2.048444 CATGGACTGCTGTATGCCTT 57.952 50.000 0.00 0.00 42.00 4.35
695 714 4.895889 TGCTGTATGCCTTGTATCTACTCT 59.104 41.667 0.00 0.00 42.00 3.24
769 788 4.146058 TGCAGCCGCATATTCCAG 57.854 55.556 0.00 0.00 45.36 3.86
942 1918 1.604593 GTGGGTCTGCTGCCACATT 60.605 57.895 13.21 0.00 33.87 2.71
961 1937 0.684535 TCATCCACGCTTGACTCCAA 59.315 50.000 0.00 0.00 0.00 3.53
962 1938 0.798776 CATCCACGCTTGACTCCAAC 59.201 55.000 0.00 0.00 0.00 3.77
963 1939 0.396435 ATCCACGCTTGACTCCAACA 59.604 50.000 0.00 0.00 0.00 3.33
1244 2224 2.125912 CGAGAACCCAGGTGAGCG 60.126 66.667 0.00 0.00 0.00 5.03
1245 2225 2.932234 CGAGAACCCAGGTGAGCGT 61.932 63.158 0.00 0.00 0.00 5.07
1246 2226 1.374758 GAGAACCCAGGTGAGCGTG 60.375 63.158 0.00 0.00 0.00 5.34
1247 2227 3.050275 GAACCCAGGTGAGCGTGC 61.050 66.667 0.00 0.00 0.00 5.34
1250 2230 2.172483 AACCCAGGTGAGCGTGCTAG 62.172 60.000 0.00 0.00 0.00 3.42
1251 2231 2.650116 CCCAGGTGAGCGTGCTAGT 61.650 63.158 0.00 0.00 0.00 2.57
1252 2232 1.153745 CCAGGTGAGCGTGCTAGTC 60.154 63.158 0.00 0.00 0.00 2.59
1253 2233 1.153745 CAGGTGAGCGTGCTAGTCC 60.154 63.158 0.00 0.00 0.00 3.85
1254 2234 1.606601 AGGTGAGCGTGCTAGTCCA 60.607 57.895 0.00 0.00 0.00 4.02
1255 2235 1.153745 GGTGAGCGTGCTAGTCCAG 60.154 63.158 0.00 0.00 0.00 3.86
1258 2238 0.609406 TGAGCGTGCTAGTCCAGTCT 60.609 55.000 0.00 0.00 0.00 3.24
1297 2277 1.000896 CCCCCTGTTCAAGCGGATT 60.001 57.895 0.00 0.00 0.00 3.01
1299 2279 0.035056 CCCCTGTTCAAGCGGATTCT 60.035 55.000 0.00 0.00 0.00 2.40
1305 2285 4.567159 CCTGTTCAAGCGGATTCTAGTTAC 59.433 45.833 0.00 0.00 0.00 2.50
1313 2319 5.819059 AGCGGATTCTAGTTACTAGTTTCG 58.181 41.667 17.69 16.65 35.72 3.46
1324 2331 9.298774 CTAGTTACTAGTTTCGTCCAAATTAGG 57.701 37.037 11.01 0.00 38.19 2.69
1325 2332 7.899973 AGTTACTAGTTTCGTCCAAATTAGGA 58.100 34.615 0.00 0.00 38.19 2.94
1326 2333 8.370182 AGTTACTAGTTTCGTCCAAATTAGGAA 58.630 33.333 0.00 0.00 38.19 3.36
1328 2335 9.729281 TTACTAGTTTCGTCCAAATTAGGAATT 57.271 29.630 0.00 0.00 38.19 2.17
1330 2337 9.074576 ACTAGTTTCGTCCAAATTAGGAATTTT 57.925 29.630 0.00 0.00 38.19 1.82
1334 2341 7.753309 TTCGTCCAAATTAGGAATTTTCTGA 57.247 32.000 0.00 0.00 38.97 3.27
1336 2343 7.816640 TCGTCCAAATTAGGAATTTTCTGAAG 58.183 34.615 0.00 0.00 38.97 3.02
1344 2351 7.611213 TTAGGAATTTTCTGAAGGAATCGTC 57.389 36.000 0.00 0.00 33.53 4.20
1738 2837 1.446792 CTCGCACGAGAAGCCACAT 60.447 57.895 14.73 0.00 44.53 3.21
1915 3130 1.445582 GTACGTCAAGGTGGCTCCG 60.446 63.158 0.00 0.00 41.99 4.63
2064 3288 7.440556 TGAATTCTGAAACTCTGAAACTCTGAG 59.559 37.037 7.05 2.45 44.75 3.35
2078 3302 4.468765 ACTCTGAGTACTAGCACGTCTA 57.531 45.455 8.91 0.00 0.00 2.59
2426 3695 5.568620 ATTCGATTTAGTTAGGGCATCCT 57.431 39.130 0.00 0.00 46.96 3.24
2428 3697 6.681729 TTCGATTTAGTTAGGGCATCCTAT 57.318 37.500 0.00 0.00 44.51 2.57
2430 3699 7.406031 TCGATTTAGTTAGGGCATCCTATAG 57.594 40.000 0.00 0.00 44.51 1.31
2432 3701 5.401531 TTTAGTTAGGGCATCCTATAGCG 57.598 43.478 0.00 0.00 44.51 4.26
2435 3704 2.766828 GTTAGGGCATCCTATAGCGGAT 59.233 50.000 0.00 0.00 44.51 4.18
2439 3708 1.834263 GGCATCCTATAGCGGATCCTT 59.166 52.381 10.75 0.11 41.81 3.36
2444 3713 6.116126 GCATCCTATAGCGGATCCTTAAATT 58.884 40.000 10.75 0.00 41.81 1.82
2446 3715 6.681729 TCCTATAGCGGATCCTTAAATTGT 57.318 37.500 10.75 0.00 0.00 2.71
2448 3717 6.497259 TCCTATAGCGGATCCTTAAATTGTCT 59.503 38.462 10.75 0.00 0.00 3.41
2455 3724 4.279420 GGATCCTTAAATTGTCTGCATCCC 59.721 45.833 3.84 0.00 0.00 3.85
2457 3726 4.934356 TCCTTAAATTGTCTGCATCCCTT 58.066 39.130 0.00 0.00 0.00 3.95
2461 3730 0.749454 ATTGTCTGCATCCCTTCGGC 60.749 55.000 0.00 0.00 0.00 5.54
2462 3731 2.514824 GTCTGCATCCCTTCGGCC 60.515 66.667 0.00 0.00 0.00 6.13
2486 3755 1.005294 CGGTCCAGACGTGTTTACCG 61.005 60.000 17.69 17.69 43.20 4.02
2494 3763 0.102120 ACGTGTTTACCGTCCAACGA 59.898 50.000 0.24 0.00 46.05 3.85
2511 3782 3.662247 ACGAGGACATTTATCGATCCC 57.338 47.619 0.00 0.00 39.66 3.85
2515 3786 1.338769 GGACATTTATCGATCCCCCGG 60.339 57.143 0.00 0.00 0.00 5.73
2540 3814 0.475048 TCGGACCTTCTTTTCCCCCT 60.475 55.000 0.00 0.00 0.00 4.79
2543 3817 2.040679 CGGACCTTCTTTTCCCCCTAAA 59.959 50.000 0.00 0.00 0.00 1.85
2548 3822 4.264397 ACCTTCTTTTCCCCCTAAATGGAG 60.264 45.833 0.00 0.00 38.35 3.86
2558 3848 0.177141 CTAAATGGAGGGGTTCGCGA 59.823 55.000 3.71 3.71 0.00 5.87
2587 3877 4.179298 GGACAACAATTACGTAGGACTCC 58.821 47.826 0.00 0.00 0.00 3.85
2590 3880 4.103357 CAACAATTACGTAGGACTCCGAG 58.897 47.826 0.00 0.00 0.00 4.63
2592 3882 4.012374 ACAATTACGTAGGACTCCGAGAA 58.988 43.478 1.33 0.00 0.00 2.87
2596 3886 0.394080 CGTAGGACTCCGAGAACCCT 60.394 60.000 1.33 7.99 0.00 4.34
2597 3887 1.391577 GTAGGACTCCGAGAACCCTC 58.608 60.000 1.33 0.00 36.08 4.30
2638 3930 3.133721 CCGGTCTCATTCTCTTCCATTCT 59.866 47.826 0.00 0.00 0.00 2.40
2673 3966 4.809496 CTTGCATCTGCGCCCCCT 62.809 66.667 4.18 0.00 45.83 4.79
2674 3967 4.802051 TTGCATCTGCGCCCCCTC 62.802 66.667 4.18 0.00 45.83 4.30
2741 4042 0.612732 CATCTGCAACCACCACCCAT 60.613 55.000 0.00 0.00 0.00 4.00
2744 4045 2.916703 GCAACCACCACCCATGCA 60.917 61.111 0.00 0.00 37.00 3.96
2759 4060 1.836999 ATGCACCCGCTCACCTTGTA 61.837 55.000 0.00 0.00 39.64 2.41
2767 4068 2.288579 CCGCTCACCTTGTACTACAACA 60.289 50.000 0.00 0.00 33.96 3.33
2768 4069 2.729882 CGCTCACCTTGTACTACAACAC 59.270 50.000 0.00 0.00 33.96 3.32
2769 4070 3.064931 GCTCACCTTGTACTACAACACC 58.935 50.000 0.00 0.00 33.96 4.16
2770 4071 3.314553 CTCACCTTGTACTACAACACCG 58.685 50.000 0.00 0.00 33.96 4.94
2771 4072 2.694628 TCACCTTGTACTACAACACCGT 59.305 45.455 0.00 0.00 33.96 4.83
3035 4336 3.502191 GCTTGACAGTTGTTTGGTCAA 57.498 42.857 0.00 0.00 46.09 3.18
3039 4340 3.779759 TGACAGTTGTTTGGTCAAATGC 58.220 40.909 6.75 2.16 43.95 3.56
3040 4341 3.123050 GACAGTTGTTTGGTCAAATGCC 58.877 45.455 6.75 0.00 43.95 4.40
3041 4342 2.499289 ACAGTTGTTTGGTCAAATGCCA 59.501 40.909 6.75 0.00 43.95 4.92
3042 4343 3.134442 ACAGTTGTTTGGTCAAATGCCAT 59.866 39.130 6.75 0.00 43.95 4.40
3043 4344 3.742369 CAGTTGTTTGGTCAAATGCCATC 59.258 43.478 0.00 0.00 36.79 3.51
3044 4345 2.721274 TGTTTGGTCAAATGCCATCG 57.279 45.000 0.00 0.00 35.71 3.84
3045 4346 1.271934 TGTTTGGTCAAATGCCATCGG 59.728 47.619 0.00 0.00 35.71 4.18
3046 4347 0.894141 TTTGGTCAAATGCCATCGGG 59.106 50.000 0.00 0.00 35.71 5.14
3059 4360 3.334272 CCATCGGGCTTATTTTCGAAC 57.666 47.619 0.00 0.00 35.25 3.95
3060 4361 2.943033 CCATCGGGCTTATTTTCGAACT 59.057 45.455 0.00 0.00 35.25 3.01
3061 4362 3.377172 CCATCGGGCTTATTTTCGAACTT 59.623 43.478 0.00 0.00 35.25 2.66
3062 4363 4.495844 CCATCGGGCTTATTTTCGAACTTC 60.496 45.833 0.00 0.00 35.25 3.01
3063 4364 3.666274 TCGGGCTTATTTTCGAACTTCA 58.334 40.909 0.00 0.00 0.00 3.02
3064 4365 3.434299 TCGGGCTTATTTTCGAACTTCAC 59.566 43.478 0.00 0.00 0.00 3.18
3065 4366 3.723835 CGGGCTTATTTTCGAACTTCACG 60.724 47.826 0.00 0.00 0.00 4.35
3066 4367 3.187842 GGGCTTATTTTCGAACTTCACGT 59.812 43.478 0.00 0.00 0.00 4.49
3067 4368 4.319984 GGGCTTATTTTCGAACTTCACGTT 60.320 41.667 0.00 0.00 38.91 3.99
3068 4369 4.611366 GGCTTATTTTCGAACTTCACGTTG 59.389 41.667 0.00 0.00 35.56 4.10
3069 4370 5.202640 GCTTATTTTCGAACTTCACGTTGT 58.797 37.500 0.00 0.00 35.56 3.32
3070 4371 5.679792 GCTTATTTTCGAACTTCACGTTGTT 59.320 36.000 0.00 0.00 35.56 2.83
3071 4372 6.195798 GCTTATTTTCGAACTTCACGTTGTTT 59.804 34.615 0.00 0.00 35.56 2.83
3072 4373 7.253519 GCTTATTTTCGAACTTCACGTTGTTTT 60.254 33.333 0.00 0.00 35.56 2.43
3073 4374 6.937886 ATTTTCGAACTTCACGTTGTTTTT 57.062 29.167 0.00 0.00 35.56 1.94
3093 4394 4.730949 TTTAGAGTATGAAGGACACGGG 57.269 45.455 0.00 0.00 0.00 5.28
3094 4395 1.486211 AGAGTATGAAGGACACGGGG 58.514 55.000 0.00 0.00 0.00 5.73
3095 4396 1.192428 GAGTATGAAGGACACGGGGT 58.808 55.000 0.00 0.00 0.00 4.95
3096 4397 2.024655 AGAGTATGAAGGACACGGGGTA 60.025 50.000 0.00 0.00 0.00 3.69
3097 4398 2.100418 GAGTATGAAGGACACGGGGTAC 59.900 54.545 0.00 0.00 0.00 3.34
3098 4399 2.105766 GTATGAAGGACACGGGGTACT 58.894 52.381 0.00 0.00 44.94 2.73
3099 4400 1.192428 ATGAAGGACACGGGGTACTC 58.808 55.000 0.00 0.00 40.91 2.59
3100 4401 1.246056 TGAAGGACACGGGGTACTCG 61.246 60.000 0.00 7.42 40.91 4.18
3101 4402 0.962356 GAAGGACACGGGGTACTCGA 60.962 60.000 14.11 0.00 40.91 4.04
3102 4403 0.964358 AAGGACACGGGGTACTCGAG 60.964 60.000 11.84 11.84 40.91 4.04
3103 4404 2.488820 GACACGGGGTACTCGAGC 59.511 66.667 13.61 0.00 0.00 5.03
3104 4405 2.282674 ACACGGGGTACTCGAGCA 60.283 61.111 13.61 0.00 0.00 4.26
3105 4406 1.664321 GACACGGGGTACTCGAGCAT 61.664 60.000 13.61 0.00 0.00 3.79
3106 4407 1.226974 CACGGGGTACTCGAGCATG 60.227 63.158 13.61 0.00 0.00 4.06
3107 4408 2.417516 CGGGGTACTCGAGCATGG 59.582 66.667 13.61 0.00 0.00 3.66
3108 4409 2.125326 CGGGGTACTCGAGCATGGA 61.125 63.158 13.61 0.00 0.00 3.41
3110 4411 1.742768 GGGTACTCGAGCATGGAGG 59.257 63.158 13.61 0.00 46.07 4.30
3111 4412 0.755698 GGGTACTCGAGCATGGAGGA 60.756 60.000 13.61 0.00 46.07 3.71
3112 4413 1.333177 GGTACTCGAGCATGGAGGAT 58.667 55.000 13.61 0.00 46.07 3.24
3113 4414 1.000283 GGTACTCGAGCATGGAGGATG 60.000 57.143 13.61 0.00 46.07 3.51
3114 4415 1.957177 GTACTCGAGCATGGAGGATGA 59.043 52.381 13.61 0.00 46.07 2.92
3115 4416 1.039068 ACTCGAGCATGGAGGATGAG 58.961 55.000 13.61 0.00 46.07 2.90
3116 4417 1.039068 CTCGAGCATGGAGGATGAGT 58.961 55.000 0.00 0.00 37.29 3.41
3117 4418 1.411977 CTCGAGCATGGAGGATGAGTT 59.588 52.381 0.00 0.00 37.29 3.01
3118 4419 1.137675 TCGAGCATGGAGGATGAGTTG 59.862 52.381 0.00 0.00 33.31 3.16
3119 4420 1.134580 CGAGCATGGAGGATGAGTTGT 60.135 52.381 0.00 0.00 33.31 3.32
3120 4421 2.679059 CGAGCATGGAGGATGAGTTGTT 60.679 50.000 0.00 0.00 33.31 2.83
3121 4422 2.681848 GAGCATGGAGGATGAGTTGTTG 59.318 50.000 0.00 0.00 33.31 3.33
3122 4423 2.040813 AGCATGGAGGATGAGTTGTTGT 59.959 45.455 0.00 0.00 33.31 3.32
3123 4424 2.163010 GCATGGAGGATGAGTTGTTGTG 59.837 50.000 0.00 0.00 33.31 3.33
3124 4425 1.896220 TGGAGGATGAGTTGTTGTGC 58.104 50.000 0.00 0.00 0.00 4.57
3125 4426 0.798776 GGAGGATGAGTTGTTGTGCG 59.201 55.000 0.00 0.00 0.00 5.34
3126 4427 1.608025 GGAGGATGAGTTGTTGTGCGA 60.608 52.381 0.00 0.00 0.00 5.10
3127 4428 2.350522 GAGGATGAGTTGTTGTGCGAT 58.649 47.619 0.00 0.00 0.00 4.58
3128 4429 2.079158 AGGATGAGTTGTTGTGCGATG 58.921 47.619 0.00 0.00 0.00 3.84
3129 4430 1.466360 GGATGAGTTGTTGTGCGATGC 60.466 52.381 0.00 0.00 0.00 3.91
3130 4431 0.166597 ATGAGTTGTTGTGCGATGCG 59.833 50.000 0.00 0.00 0.00 4.73
3131 4432 1.157257 TGAGTTGTTGTGCGATGCGT 61.157 50.000 0.00 0.00 0.00 5.24
3132 4433 0.722469 GAGTTGTTGTGCGATGCGTG 60.722 55.000 0.00 0.00 0.00 5.34
3133 4434 1.157257 AGTTGTTGTGCGATGCGTGA 61.157 50.000 0.00 0.00 0.00 4.35
3134 4435 0.110238 GTTGTTGTGCGATGCGTGAT 60.110 50.000 0.00 0.00 0.00 3.06
3135 4436 0.590682 TTGTTGTGCGATGCGTGATT 59.409 45.000 0.00 0.00 0.00 2.57
3136 4437 0.110283 TGTTGTGCGATGCGTGATTG 60.110 50.000 0.00 0.00 0.00 2.67
3137 4438 0.794229 GTTGTGCGATGCGTGATTGG 60.794 55.000 0.00 0.00 0.00 3.16
3138 4439 1.233950 TTGTGCGATGCGTGATTGGT 61.234 50.000 0.00 0.00 0.00 3.67
3139 4440 1.233950 TGTGCGATGCGTGATTGGTT 61.234 50.000 0.00 0.00 0.00 3.67
3140 4441 0.794229 GTGCGATGCGTGATTGGTTG 60.794 55.000 0.00 0.00 0.00 3.77
3141 4442 1.233950 TGCGATGCGTGATTGGTTGT 61.234 50.000 0.00 0.00 0.00 3.32
3142 4443 0.724549 GCGATGCGTGATTGGTTGTA 59.275 50.000 0.00 0.00 0.00 2.41
3143 4444 1.330521 GCGATGCGTGATTGGTTGTAT 59.669 47.619 0.00 0.00 0.00 2.29
3144 4445 2.599848 GCGATGCGTGATTGGTTGTATC 60.600 50.000 0.00 0.00 0.00 2.24
3145 4446 2.866156 CGATGCGTGATTGGTTGTATCT 59.134 45.455 0.00 0.00 0.00 1.98
3146 4447 3.302675 CGATGCGTGATTGGTTGTATCTG 60.303 47.826 0.00 0.00 0.00 2.90
3147 4448 3.052455 TGCGTGATTGGTTGTATCTGT 57.948 42.857 0.00 0.00 0.00 3.41
3148 4449 2.741517 TGCGTGATTGGTTGTATCTGTG 59.258 45.455 0.00 0.00 0.00 3.66
3149 4450 2.095853 GCGTGATTGGTTGTATCTGTGG 59.904 50.000 0.00 0.00 0.00 4.17
3150 4451 3.595173 CGTGATTGGTTGTATCTGTGGA 58.405 45.455 0.00 0.00 0.00 4.02
3151 4452 4.191544 CGTGATTGGTTGTATCTGTGGAT 58.808 43.478 0.00 0.00 36.07 3.41
3152 4453 4.635765 CGTGATTGGTTGTATCTGTGGATT 59.364 41.667 0.00 0.00 33.71 3.01
3153 4454 5.123820 CGTGATTGGTTGTATCTGTGGATTT 59.876 40.000 0.00 0.00 33.71 2.17
3154 4455 6.555315 GTGATTGGTTGTATCTGTGGATTTC 58.445 40.000 0.00 0.00 33.71 2.17
3155 4456 5.353956 TGATTGGTTGTATCTGTGGATTTCG 59.646 40.000 0.00 0.00 33.71 3.46
3156 4457 4.280436 TGGTTGTATCTGTGGATTTCGT 57.720 40.909 0.00 0.00 33.71 3.85
3157 4458 5.408880 TGGTTGTATCTGTGGATTTCGTA 57.591 39.130 0.00 0.00 33.71 3.43
3158 4459 5.416083 TGGTTGTATCTGTGGATTTCGTAG 58.584 41.667 0.00 0.00 33.71 3.51
3159 4460 4.809426 GGTTGTATCTGTGGATTTCGTAGG 59.191 45.833 0.00 0.00 33.71 3.18
3160 4461 4.054780 TGTATCTGTGGATTTCGTAGGC 57.945 45.455 0.00 0.00 33.71 3.93
3161 4462 3.449377 TGTATCTGTGGATTTCGTAGGCA 59.551 43.478 0.00 0.00 33.71 4.75
3162 4463 2.672961 TCTGTGGATTTCGTAGGCAG 57.327 50.000 0.00 0.00 0.00 4.85
3163 4464 1.207089 TCTGTGGATTTCGTAGGCAGG 59.793 52.381 0.00 0.00 0.00 4.85
3164 4465 1.207089 CTGTGGATTTCGTAGGCAGGA 59.793 52.381 0.00 0.00 0.00 3.86
3165 4466 1.207089 TGTGGATTTCGTAGGCAGGAG 59.793 52.381 0.00 0.00 0.00 3.69
3166 4467 0.178068 TGGATTTCGTAGGCAGGAGC 59.822 55.000 0.00 0.00 41.10 4.70
3167 4468 0.178068 GGATTTCGTAGGCAGGAGCA 59.822 55.000 0.00 0.00 44.61 4.26
3168 4469 1.576356 GATTTCGTAGGCAGGAGCAG 58.424 55.000 0.00 0.00 44.61 4.24
3169 4470 1.137086 GATTTCGTAGGCAGGAGCAGA 59.863 52.381 0.00 0.00 44.61 4.26
3170 4471 0.973632 TTTCGTAGGCAGGAGCAGAA 59.026 50.000 0.00 0.00 44.61 3.02
3171 4472 0.532573 TTCGTAGGCAGGAGCAGAAG 59.467 55.000 0.00 0.00 44.61 2.85
3172 4473 1.142748 CGTAGGCAGGAGCAGAAGG 59.857 63.158 0.00 0.00 44.61 3.46
3173 4474 1.524482 GTAGGCAGGAGCAGAAGGG 59.476 63.158 0.00 0.00 44.61 3.95
3174 4475 1.690633 TAGGCAGGAGCAGAAGGGG 60.691 63.158 0.00 0.00 44.61 4.79
3175 4476 4.120755 GGCAGGAGCAGAAGGGGG 62.121 72.222 0.00 0.00 44.61 5.40
3176 4477 4.811364 GCAGGAGCAGAAGGGGGC 62.811 72.222 0.00 0.00 41.58 5.80
3177 4478 3.013932 CAGGAGCAGAAGGGGGCT 61.014 66.667 0.00 0.00 44.48 5.19
3181 4482 3.409384 AGCAGAAGGGGGCTCTTC 58.591 61.111 11.32 11.32 42.43 2.87
3185 4486 2.273776 GAAGGGGGCTCTTCTGGC 59.726 66.667 11.78 0.00 39.84 4.85
3186 4487 2.532715 AAGGGGGCTCTTCTGGCA 60.533 61.111 0.00 0.00 0.00 4.92
3187 4488 2.549169 GAAGGGGGCTCTTCTGGCAG 62.549 65.000 8.58 8.58 39.84 4.85
3188 4489 4.811364 GGGGGCTCTTCTGGCAGC 62.811 72.222 10.34 0.00 34.65 5.25
3193 4494 3.485431 CTCTTCTGGCAGCGCGTG 61.485 66.667 10.34 6.12 0.00 5.34
3202 4503 2.786584 CAGCGCGTGCATGATTCA 59.213 55.556 24.79 0.00 46.23 2.57
3203 4504 1.354155 CAGCGCGTGCATGATTCAT 59.646 52.632 24.79 0.00 46.23 2.57
3204 4505 0.248336 CAGCGCGTGCATGATTCATT 60.248 50.000 24.79 0.00 46.23 2.57
3205 4506 0.452987 AGCGCGTGCATGATTCATTT 59.547 45.000 24.79 0.00 46.23 2.32
3206 4507 1.670295 AGCGCGTGCATGATTCATTTA 59.330 42.857 24.79 0.00 46.23 1.40
3207 4508 2.097304 AGCGCGTGCATGATTCATTTAA 59.903 40.909 24.79 0.00 46.23 1.52
3208 4509 2.214020 GCGCGTGCATGATTCATTTAAC 59.786 45.455 17.66 0.00 42.15 2.01
3209 4510 2.460041 CGCGTGCATGATTCATTTAACG 59.540 45.455 10.93 15.85 0.00 3.18
3210 4511 2.214020 GCGTGCATGATTCATTTAACGC 59.786 45.455 23.48 23.48 35.82 4.84
3211 4512 2.460041 CGTGCATGATTCATTTAACGCG 59.540 45.455 3.53 3.53 0.00 6.01
3212 4513 2.214020 GTGCATGATTCATTTAACGCGC 59.786 45.455 5.73 0.00 0.00 6.86
3213 4514 1.444269 GCATGATTCATTTAACGCGCG 59.556 47.619 30.96 30.96 0.00 6.86
3214 4515 2.849126 GCATGATTCATTTAACGCGCGA 60.849 45.455 39.36 15.38 0.00 5.87
3215 4516 3.350043 CATGATTCATTTAACGCGCGAA 58.650 40.909 39.36 21.61 0.00 4.70
3216 4517 3.457198 TGATTCATTTAACGCGCGAAA 57.543 38.095 39.36 27.09 0.00 3.46
3217 4518 3.412654 TGATTCATTTAACGCGCGAAAG 58.587 40.909 39.36 17.65 0.00 2.62
3232 4533 2.822827 CGAAAGCACATTGTGTCGTAC 58.177 47.619 17.64 1.31 35.75 3.67
3233 4534 2.219903 CGAAAGCACATTGTGTCGTACA 59.780 45.455 17.64 0.00 35.75 2.90
3242 4543 1.941325 TGTGTCGTACAACATGCACA 58.059 45.000 0.00 0.00 36.06 4.57
3243 4544 2.488952 TGTGTCGTACAACATGCACAT 58.511 42.857 0.00 0.00 36.06 3.21
3244 4545 2.478514 TGTGTCGTACAACATGCACATC 59.521 45.455 0.00 0.00 36.06 3.06
3245 4546 2.478514 GTGTCGTACAACATGCACATCA 59.521 45.455 0.00 0.00 0.00 3.07
3246 4547 3.125146 GTGTCGTACAACATGCACATCAT 59.875 43.478 0.00 0.00 35.31 2.45
3247 4548 3.370672 TGTCGTACAACATGCACATCATC 59.629 43.478 0.00 0.00 31.79 2.92
3248 4549 2.935849 TCGTACAACATGCACATCATCC 59.064 45.455 0.00 0.00 31.79 3.51
3249 4550 2.677337 CGTACAACATGCACATCATCCA 59.323 45.455 0.00 0.00 31.79 3.41
3250 4551 3.313249 CGTACAACATGCACATCATCCAT 59.687 43.478 0.00 0.00 31.79 3.41
3251 4552 3.793797 ACAACATGCACATCATCCATG 57.206 42.857 0.00 0.00 41.49 3.66
3252 4553 3.358118 ACAACATGCACATCATCCATGA 58.642 40.909 6.83 0.00 38.84 3.07
3253 4554 3.764972 ACAACATGCACATCATCCATGAA 59.235 39.130 6.83 0.00 40.69 2.57
3254 4555 4.109766 CAACATGCACATCATCCATGAAC 58.890 43.478 6.83 0.00 40.69 3.18
3255 4556 2.356695 ACATGCACATCATCCATGAACG 59.643 45.455 6.83 0.00 40.69 3.95
3256 4557 0.734309 TGCACATCATCCATGAACGC 59.266 50.000 0.00 0.00 40.69 4.84
3257 4558 0.734309 GCACATCATCCATGAACGCA 59.266 50.000 0.00 0.00 40.69 5.24
3258 4559 1.132834 GCACATCATCCATGAACGCAA 59.867 47.619 0.00 0.00 40.69 4.85
3259 4560 2.223641 GCACATCATCCATGAACGCAAT 60.224 45.455 0.00 0.00 40.69 3.56
3260 4561 3.368495 CACATCATCCATGAACGCAATG 58.632 45.455 0.00 0.00 40.69 2.82
3261 4562 3.018856 ACATCATCCATGAACGCAATGT 58.981 40.909 0.00 0.00 40.69 2.71
3262 4563 3.181494 ACATCATCCATGAACGCAATGTG 60.181 43.478 0.00 0.00 40.69 3.21
3263 4564 2.709213 TCATCCATGAACGCAATGTGA 58.291 42.857 0.00 0.00 33.08 3.58
3264 4565 3.080319 TCATCCATGAACGCAATGTGAA 58.920 40.909 0.00 0.00 33.08 3.18
3265 4566 3.127376 TCATCCATGAACGCAATGTGAAG 59.873 43.478 0.00 0.00 33.08 3.02
3266 4567 2.503331 TCCATGAACGCAATGTGAAGT 58.497 42.857 0.00 0.00 0.00 3.01
3267 4568 2.483877 TCCATGAACGCAATGTGAAGTC 59.516 45.455 0.00 0.00 0.00 3.01
3268 4569 2.498905 CATGAACGCAATGTGAAGTCG 58.501 47.619 0.00 0.00 0.00 4.18
3269 4570 1.577468 TGAACGCAATGTGAAGTCGT 58.423 45.000 0.00 0.00 34.63 4.34
3270 4571 1.937223 TGAACGCAATGTGAAGTCGTT 59.063 42.857 0.00 0.00 44.59 3.85
3271 4572 3.124560 TGAACGCAATGTGAAGTCGTTA 58.875 40.909 0.00 0.00 42.41 3.18
3272 4573 3.183574 TGAACGCAATGTGAAGTCGTTAG 59.816 43.478 0.00 0.00 42.41 2.34
3273 4574 2.750948 ACGCAATGTGAAGTCGTTAGT 58.249 42.857 0.00 0.00 0.00 2.24
3274 4575 2.475111 ACGCAATGTGAAGTCGTTAGTG 59.525 45.455 0.00 0.00 0.00 2.74
3275 4576 2.475111 CGCAATGTGAAGTCGTTAGTGT 59.525 45.455 0.00 0.00 0.00 3.55
3276 4577 3.671459 CGCAATGTGAAGTCGTTAGTGTA 59.329 43.478 0.00 0.00 0.00 2.90
3277 4578 4.326278 CGCAATGTGAAGTCGTTAGTGTAT 59.674 41.667 0.00 0.00 0.00 2.29
3278 4579 5.498700 CGCAATGTGAAGTCGTTAGTGTATC 60.499 44.000 0.00 0.00 0.00 2.24
3279 4580 5.498700 GCAATGTGAAGTCGTTAGTGTATCG 60.499 44.000 0.00 0.00 0.00 2.92
3280 4581 5.556355 ATGTGAAGTCGTTAGTGTATCGA 57.444 39.130 0.00 0.00 0.00 3.59
3281 4582 5.556355 TGTGAAGTCGTTAGTGTATCGAT 57.444 39.130 2.16 2.16 36.08 3.59
3282 4583 5.329493 TGTGAAGTCGTTAGTGTATCGATG 58.671 41.667 8.54 0.00 36.08 3.84
3283 4584 4.733887 GTGAAGTCGTTAGTGTATCGATGG 59.266 45.833 8.54 0.00 36.08 3.51
3284 4585 4.397103 TGAAGTCGTTAGTGTATCGATGGT 59.603 41.667 8.54 0.00 36.08 3.55
3285 4586 5.585844 TGAAGTCGTTAGTGTATCGATGGTA 59.414 40.000 8.54 0.00 36.08 3.25
3286 4587 5.415415 AGTCGTTAGTGTATCGATGGTAC 57.585 43.478 8.54 4.35 36.08 3.34
3301 4602 1.837439 TGGTACATCATCCAGACCACC 59.163 52.381 0.00 0.00 35.26 4.61
3302 4603 1.202533 GGTACATCATCCAGACCACCG 60.203 57.143 0.00 0.00 0.00 4.94
3303 4604 1.480954 GTACATCATCCAGACCACCGT 59.519 52.381 0.00 0.00 0.00 4.83
3304 4605 0.537188 ACATCATCCAGACCACCGTC 59.463 55.000 0.00 0.00 39.50 4.79
3305 4606 0.536724 CATCATCCAGACCACCGTCA 59.463 55.000 0.00 0.00 41.87 4.35
3306 4607 0.537188 ATCATCCAGACCACCGTCAC 59.463 55.000 0.00 0.00 41.87 3.67
3307 4608 1.079127 CATCCAGACCACCGTCACC 60.079 63.158 0.00 0.00 41.87 4.02
3308 4609 1.535444 ATCCAGACCACCGTCACCA 60.535 57.895 0.00 0.00 41.87 4.17
3309 4610 0.909610 ATCCAGACCACCGTCACCAT 60.910 55.000 0.00 0.00 41.87 3.55
3310 4611 1.375908 CCAGACCACCGTCACCATG 60.376 63.158 0.00 0.00 41.87 3.66
3311 4612 1.371183 CAGACCACCGTCACCATGT 59.629 57.895 0.00 0.00 41.87 3.21
3312 4613 0.250295 CAGACCACCGTCACCATGTT 60.250 55.000 0.00 0.00 41.87 2.71
3313 4614 0.472471 AGACCACCGTCACCATGTTT 59.528 50.000 0.00 0.00 41.87 2.83
3314 4615 1.133915 AGACCACCGTCACCATGTTTT 60.134 47.619 0.00 0.00 41.87 2.43
3315 4616 1.001815 GACCACCGTCACCATGTTTTG 60.002 52.381 0.00 0.00 38.99 2.44
3316 4617 1.028905 CCACCGTCACCATGTTTTGT 58.971 50.000 0.00 0.00 0.00 2.83
3317 4618 1.268999 CCACCGTCACCATGTTTTGTG 60.269 52.381 0.00 0.00 0.00 3.33
3318 4619 1.028905 ACCGTCACCATGTTTTGTGG 58.971 50.000 0.00 0.00 42.55 4.17
3323 4624 4.651585 CCATGTTTTGTGGTGCGG 57.348 55.556 0.00 0.00 31.96 5.69
3324 4625 1.739049 CCATGTTTTGTGGTGCGGT 59.261 52.632 0.00 0.00 31.96 5.68
3325 4626 0.103937 CCATGTTTTGTGGTGCGGTT 59.896 50.000 0.00 0.00 31.96 4.44
3326 4627 1.207390 CATGTTTTGTGGTGCGGTTG 58.793 50.000 0.00 0.00 0.00 3.77
3327 4628 1.107114 ATGTTTTGTGGTGCGGTTGA 58.893 45.000 0.00 0.00 0.00 3.18
3328 4629 1.107114 TGTTTTGTGGTGCGGTTGAT 58.893 45.000 0.00 0.00 0.00 2.57
3329 4630 2.298610 TGTTTTGTGGTGCGGTTGATA 58.701 42.857 0.00 0.00 0.00 2.15
3330 4631 2.887783 TGTTTTGTGGTGCGGTTGATAT 59.112 40.909 0.00 0.00 0.00 1.63
3331 4632 3.241701 GTTTTGTGGTGCGGTTGATATG 58.758 45.455 0.00 0.00 0.00 1.78
3332 4633 0.808125 TTGTGGTGCGGTTGATATGC 59.192 50.000 0.00 0.00 0.00 3.14
3333 4634 1.029408 TGTGGTGCGGTTGATATGCC 61.029 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.338620 CTGCGGAACCTGTGACGA 59.661 61.111 0.00 0.00 0.00 4.20
293 294 5.394738 AGGATAGAGATGGGATCGTTGTAA 58.605 41.667 0.00 0.00 0.00 2.41
546 565 3.936564 GCAGGGGAATGCATGTTAAAAA 58.063 40.909 0.00 0.00 45.77 1.94
547 566 3.608316 GCAGGGGAATGCATGTTAAAA 57.392 42.857 0.00 0.00 45.77 1.52
556 575 1.260544 ACTTTCTTGCAGGGGAATGC 58.739 50.000 0.00 0.00 46.68 3.56
557 576 5.011023 ACTTTAACTTTCTTGCAGGGGAATG 59.989 40.000 0.00 3.72 0.00 2.67
558 577 5.011023 CACTTTAACTTTCTTGCAGGGGAAT 59.989 40.000 0.00 0.00 0.00 3.01
559 578 4.340950 CACTTTAACTTTCTTGCAGGGGAA 59.659 41.667 0.00 0.00 0.00 3.97
560 579 3.888930 CACTTTAACTTTCTTGCAGGGGA 59.111 43.478 0.00 0.00 0.00 4.81
561 580 3.636764 ACACTTTAACTTTCTTGCAGGGG 59.363 43.478 0.00 0.00 0.00 4.79
562 581 4.097892 ACACACTTTAACTTTCTTGCAGGG 59.902 41.667 0.00 0.00 0.00 4.45
563 582 5.248870 ACACACTTTAACTTTCTTGCAGG 57.751 39.130 0.00 0.00 0.00 4.85
564 583 6.092748 ACAACACACTTTAACTTTCTTGCAG 58.907 36.000 0.00 0.00 0.00 4.41
565 584 6.019779 ACAACACACTTTAACTTTCTTGCA 57.980 33.333 0.00 0.00 0.00 4.08
566 585 6.251376 CAGACAACACACTTTAACTTTCTTGC 59.749 38.462 0.00 0.00 0.00 4.01
567 586 7.305474 ACAGACAACACACTTTAACTTTCTTG 58.695 34.615 0.00 0.00 0.00 3.02
568 587 7.448748 ACAGACAACACACTTTAACTTTCTT 57.551 32.000 0.00 0.00 0.00 2.52
569 588 7.448748 AACAGACAACACACTTTAACTTTCT 57.551 32.000 0.00 0.00 0.00 2.52
570 589 9.615295 TTAAACAGACAACACACTTTAACTTTC 57.385 29.630 0.00 0.00 0.00 2.62
571 590 9.968870 TTTAAACAGACAACACACTTTAACTTT 57.031 25.926 0.00 0.00 0.00 2.66
576 595 9.575783 GGAAATTTAAACAGACAACACACTTTA 57.424 29.630 0.00 0.00 0.00 1.85
577 596 7.274686 CGGAAATTTAAACAGACAACACACTTT 59.725 33.333 0.00 0.00 0.00 2.66
578 597 6.750039 CGGAAATTTAAACAGACAACACACTT 59.250 34.615 0.00 0.00 0.00 3.16
579 598 6.262601 CGGAAATTTAAACAGACAACACACT 58.737 36.000 0.00 0.00 0.00 3.55
580 599 5.457473 CCGGAAATTTAAACAGACAACACAC 59.543 40.000 0.00 0.00 0.00 3.82
581 600 5.125739 ACCGGAAATTTAAACAGACAACACA 59.874 36.000 9.46 0.00 0.00 3.72
582 601 5.584442 ACCGGAAATTTAAACAGACAACAC 58.416 37.500 9.46 0.00 0.00 3.32
583 602 5.838531 ACCGGAAATTTAAACAGACAACA 57.161 34.783 9.46 0.00 0.00 3.33
584 603 7.275999 TGAAAACCGGAAATTTAAACAGACAAC 59.724 33.333 9.46 0.00 0.00 3.32
585 604 7.321153 TGAAAACCGGAAATTTAAACAGACAA 58.679 30.769 9.46 0.00 0.00 3.18
586 605 6.864342 TGAAAACCGGAAATTTAAACAGACA 58.136 32.000 9.46 0.00 0.00 3.41
587 606 7.758613 TTGAAAACCGGAAATTTAAACAGAC 57.241 32.000 9.46 0.00 0.00 3.51
588 607 8.950208 AATTGAAAACCGGAAATTTAAACAGA 57.050 26.923 9.46 0.00 0.00 3.41
589 608 9.995957 AAAATTGAAAACCGGAAATTTAAACAG 57.004 25.926 9.46 0.00 33.16 3.16
592 611 9.788960 CCAAAAATTGAAAACCGGAAATTTAAA 57.211 25.926 9.46 6.42 33.16 1.52
593 612 9.174166 TCCAAAAATTGAAAACCGGAAATTTAA 57.826 25.926 9.46 3.30 33.16 1.52
594 613 8.732746 TCCAAAAATTGAAAACCGGAAATTTA 57.267 26.923 9.46 0.00 33.16 1.40
595 614 7.554476 TCTCCAAAAATTGAAAACCGGAAATTT 59.446 29.630 9.46 6.38 34.54 1.82
612 631 5.137551 CCCTCCTAGTTGTTTCTCCAAAAA 58.862 41.667 0.00 0.00 0.00 1.94
645 664 3.041940 GAACACCGCCACGACCAG 61.042 66.667 0.00 0.00 0.00 4.00
676 695 6.649973 TCGAGTAGAGTAGATACAAGGCATAC 59.350 42.308 0.00 0.00 0.00 2.39
677 696 6.649973 GTCGAGTAGAGTAGATACAAGGCATA 59.350 42.308 0.00 0.00 0.00 3.14
678 697 5.470777 GTCGAGTAGAGTAGATACAAGGCAT 59.529 44.000 0.00 0.00 0.00 4.40
679 698 4.815308 GTCGAGTAGAGTAGATACAAGGCA 59.185 45.833 0.00 0.00 0.00 4.75
680 699 5.058490 AGTCGAGTAGAGTAGATACAAGGC 58.942 45.833 0.00 0.00 0.00 4.35
681 700 5.403166 CGAGTCGAGTAGAGTAGATACAAGG 59.597 48.000 6.73 0.00 31.40 3.61
682 701 5.107760 GCGAGTCGAGTAGAGTAGATACAAG 60.108 48.000 18.61 0.00 31.40 3.16
683 702 4.744137 GCGAGTCGAGTAGAGTAGATACAA 59.256 45.833 18.61 0.00 31.40 2.41
684 703 4.202090 TGCGAGTCGAGTAGAGTAGATACA 60.202 45.833 18.61 0.00 31.40 2.29
695 714 2.831597 TCGTCTTGCGAGTCGAGTA 58.168 52.632 18.61 0.00 45.68 2.59
725 744 2.395654 GAGAATATTCTCGGTCGGCAC 58.604 52.381 25.64 4.76 43.63 5.01
780 1550 5.186996 ACTAGTACGTGAAAACGAAAGGA 57.813 39.130 5.12 0.00 36.85 3.36
781 1551 6.367984 GTACTAGTACGTGAAAACGAAAGG 57.632 41.667 16.96 0.00 36.85 3.11
795 1565 4.568760 ACCTCGTAAAGCTCGTACTAGTAC 59.431 45.833 21.06 21.06 0.00 2.73
796 1566 4.568359 CACCTCGTAAAGCTCGTACTAGTA 59.432 45.833 0.00 0.00 0.00 1.82
797 1567 3.373439 CACCTCGTAAAGCTCGTACTAGT 59.627 47.826 0.00 0.00 0.00 2.57
909 1680 1.699634 ACCCACGATCCAATATCTGGG 59.300 52.381 15.28 15.28 46.44 4.45
942 1918 0.684535 TTGGAGTCAAGCGTGGATGA 59.315 50.000 0.00 0.00 0.00 2.92
961 1937 1.003718 GGTGGCCGTTAAGCTCTGT 60.004 57.895 0.00 0.00 0.00 3.41
962 1938 2.100631 CGGTGGCCGTTAAGCTCTG 61.101 63.158 0.00 0.00 42.73 3.35
963 1939 2.264794 CGGTGGCCGTTAAGCTCT 59.735 61.111 0.00 0.00 42.73 4.09
1244 2224 0.247736 CCACCAGACTGGACTAGCAC 59.752 60.000 28.56 0.00 40.96 4.40
1245 2225 1.544825 GCCACCAGACTGGACTAGCA 61.545 60.000 28.56 0.00 40.96 3.49
1246 2226 1.219393 GCCACCAGACTGGACTAGC 59.781 63.158 28.56 18.77 40.96 3.42
1247 2227 1.901085 GGCCACCAGACTGGACTAG 59.099 63.158 28.56 13.40 40.96 2.57
1282 2262 3.252974 ACTAGAATCCGCTTGAACAGG 57.747 47.619 0.00 0.00 0.00 4.00
1283 2263 5.411781 AGTAACTAGAATCCGCTTGAACAG 58.588 41.667 0.00 0.00 0.00 3.16
1287 2267 6.770746 AACTAGTAACTAGAATCCGCTTGA 57.229 37.500 0.00 0.00 37.49 3.02
1299 2279 9.023962 TCCTAATTTGGACGAAACTAGTAACTA 57.976 33.333 4.36 0.00 0.00 2.24
1305 2285 9.556030 GAAAATTCCTAATTTGGACGAAACTAG 57.444 33.333 8.23 0.00 40.05 2.57
1313 2319 8.122472 TCCTTCAGAAAATTCCTAATTTGGAC 57.878 34.615 8.23 0.00 40.05 4.02
1323 2330 4.201822 CGGACGATTCCTTCAGAAAATTCC 60.202 45.833 0.00 0.00 40.23 3.01
1324 2331 4.728021 GCGGACGATTCCTTCAGAAAATTC 60.728 45.833 0.00 0.00 40.23 2.17
1325 2332 3.127030 GCGGACGATTCCTTCAGAAAATT 59.873 43.478 0.00 0.00 40.23 1.82
1326 2333 2.678336 GCGGACGATTCCTTCAGAAAAT 59.322 45.455 0.00 0.00 40.23 1.82
1328 2335 1.001520 TGCGGACGATTCCTTCAGAAA 59.998 47.619 0.00 0.00 40.23 2.52
1330 2337 0.173481 CTGCGGACGATTCCTTCAGA 59.827 55.000 0.00 0.00 40.18 3.27
1334 2341 0.608640 AAGTCTGCGGACGATTCCTT 59.391 50.000 19.79 4.94 46.29 3.36
1336 2343 1.140407 CGAAGTCTGCGGACGATTCC 61.140 60.000 19.79 7.69 46.29 3.01
1344 2351 1.007336 GTACACCACGAAGTCTGCGG 61.007 60.000 4.95 0.00 41.61 5.69
1738 2837 1.196766 ACATGAGCAGAGCAGGGTCA 61.197 55.000 0.00 6.63 45.60 4.02
1915 3130 3.991536 GACCTCGCTCGTGGCCTTC 62.992 68.421 3.32 0.00 37.74 3.46
2037 3252 7.440556 TCAGAGTTTCAGAGTTTCAGAATTCAG 59.559 37.037 8.44 0.00 0.00 3.02
2038 3253 7.275183 TCAGAGTTTCAGAGTTTCAGAATTCA 58.725 34.615 8.44 0.00 0.00 2.57
2039 3254 7.440856 ACTCAGAGTTTCAGAGTTTCAGAATTC 59.559 37.037 0.00 0.00 39.75 2.17
2041 3256 6.825610 ACTCAGAGTTTCAGAGTTTCAGAAT 58.174 36.000 0.00 0.00 39.75 2.40
2064 3288 6.020599 CACACATCAATTAGACGTGCTAGTAC 60.021 42.308 0.00 0.08 43.94 2.73
2095 3346 5.537300 AGATCGCCTACACAATACAAGAT 57.463 39.130 0.00 0.00 0.00 2.40
2096 3347 5.339008 AAGATCGCCTACACAATACAAGA 57.661 39.130 0.00 0.00 0.00 3.02
2097 3348 4.207224 CGAAGATCGCCTACACAATACAAG 59.793 45.833 0.00 0.00 31.14 3.16
2098 3349 4.109766 CGAAGATCGCCTACACAATACAA 58.890 43.478 0.00 0.00 31.14 2.41
2404 3669 5.568620 AGGATGCCCTAACTAAATCGAAT 57.431 39.130 0.00 0.00 42.15 3.34
2426 3695 5.932303 GCAGACAATTTAAGGATCCGCTATA 59.068 40.000 5.98 0.00 0.00 1.31
2428 3697 4.127171 GCAGACAATTTAAGGATCCGCTA 58.873 43.478 5.98 0.00 0.00 4.26
2430 3699 2.682856 TGCAGACAATTTAAGGATCCGC 59.317 45.455 5.98 0.00 0.00 5.54
2432 3701 4.279420 GGGATGCAGACAATTTAAGGATCC 59.721 45.833 2.48 2.48 43.79 3.36
2435 3704 4.591321 AGGGATGCAGACAATTTAAGGA 57.409 40.909 0.00 0.00 0.00 3.36
2494 3763 1.623811 CGGGGGATCGATAAATGTCCT 59.376 52.381 0.00 0.00 0.00 3.85
2501 3770 3.307906 CGGCCGGGGGATCGATAA 61.308 66.667 20.10 0.00 0.00 1.75
2540 3814 0.177141 CTCGCGAACCCCTCCATTTA 59.823 55.000 11.33 0.00 0.00 1.40
2543 3817 2.363795 TCTCGCGAACCCCTCCAT 60.364 61.111 11.33 0.00 0.00 3.41
2548 3822 4.493747 CGGACTCTCGCGAACCCC 62.494 72.222 11.33 8.30 0.00 4.95
2550 3824 3.437795 TCCGGACTCTCGCGAACC 61.438 66.667 11.33 10.50 0.00 3.62
2551 3825 2.202453 GTCCGGACTCTCGCGAAC 60.202 66.667 27.64 0.00 0.00 3.95
2552 3826 2.263021 TTGTCCGGACTCTCGCGAA 61.263 57.895 33.39 15.98 0.00 4.70
2558 3848 2.298163 ACGTAATTGTTGTCCGGACTCT 59.702 45.455 33.39 14.39 0.00 3.24
2590 3880 2.406002 TTTGAGTGGGCCGAGGGTTC 62.406 60.000 0.00 0.00 0.00 3.62
2592 3882 2.198304 GATTTGAGTGGGCCGAGGGT 62.198 60.000 0.00 0.00 0.00 4.34
2596 3886 1.910580 GAGGGATTTGAGTGGGCCGA 61.911 60.000 0.00 0.00 0.00 5.54
2597 3887 1.452108 GAGGGATTTGAGTGGGCCG 60.452 63.158 0.00 0.00 0.00 6.13
2598 3888 1.076705 GGAGGGATTTGAGTGGGCC 60.077 63.158 0.00 0.00 0.00 5.80
2638 3930 1.995626 GCAAGAGGGAGTAGGGGCA 60.996 63.158 0.00 0.00 0.00 5.36
2680 3980 2.693762 CGGAGAGGTACAACGGCGA 61.694 63.158 16.62 0.00 0.00 5.54
2717 4017 2.040544 GGTGGTTGCAGATGTCCGG 61.041 63.158 0.00 0.00 0.00 5.14
2723 4023 0.612732 CATGGGTGGTGGTTGCAGAT 60.613 55.000 0.00 0.00 0.00 2.90
2726 4026 2.916703 GCATGGGTGGTGGTTGCA 60.917 61.111 0.00 0.00 33.58 4.08
2741 4042 2.512355 TACAAGGTGAGCGGGTGCA 61.512 57.895 0.00 0.00 46.23 4.57
2744 4045 0.893447 GTAGTACAAGGTGAGCGGGT 59.107 55.000 0.00 0.00 0.00 5.28
3015 4316 3.502191 TTGACCAAACAACTGTCAAGC 57.498 42.857 0.00 0.00 42.36 4.01
3016 4317 4.268405 GCATTTGACCAAACAACTGTCAAG 59.732 41.667 0.00 0.00 46.27 3.02
3017 4318 4.180057 GCATTTGACCAAACAACTGTCAA 58.820 39.130 0.00 0.00 44.70 3.18
3018 4319 3.430098 GGCATTTGACCAAACAACTGTCA 60.430 43.478 0.00 0.00 35.91 3.58
3019 4320 3.123050 GGCATTTGACCAAACAACTGTC 58.877 45.455 0.00 0.00 34.48 3.51
3020 4321 2.499289 TGGCATTTGACCAAACAACTGT 59.501 40.909 0.00 0.00 34.48 3.55
3021 4322 3.176552 TGGCATTTGACCAAACAACTG 57.823 42.857 0.00 0.00 33.12 3.16
3022 4323 3.552684 CGATGGCATTTGACCAAACAACT 60.553 43.478 0.00 0.00 41.49 3.16
3023 4324 2.730928 CGATGGCATTTGACCAAACAAC 59.269 45.455 0.00 0.00 41.49 3.32
3024 4325 2.288702 CCGATGGCATTTGACCAAACAA 60.289 45.455 0.00 0.00 41.49 2.83
3025 4326 1.271934 CCGATGGCATTTGACCAAACA 59.728 47.619 0.00 0.00 41.49 2.83
3026 4327 1.404047 CCCGATGGCATTTGACCAAAC 60.404 52.381 0.00 0.00 41.49 2.93
3027 4328 0.894141 CCCGATGGCATTTGACCAAA 59.106 50.000 0.00 0.00 41.49 3.28
3028 4329 2.577490 CCCGATGGCATTTGACCAA 58.423 52.632 0.00 0.00 41.49 3.67
3029 4330 4.335214 CCCGATGGCATTTGACCA 57.665 55.556 0.00 0.00 42.61 4.02
3039 4340 2.943033 AGTTCGAAAATAAGCCCGATGG 59.057 45.455 0.00 0.00 0.00 3.51
3040 4341 4.094294 TGAAGTTCGAAAATAAGCCCGATG 59.906 41.667 0.00 0.00 0.00 3.84
3041 4342 4.094442 GTGAAGTTCGAAAATAAGCCCGAT 59.906 41.667 0.00 0.00 0.00 4.18
3042 4343 3.434299 GTGAAGTTCGAAAATAAGCCCGA 59.566 43.478 0.00 0.00 0.00 5.14
3043 4344 3.723835 CGTGAAGTTCGAAAATAAGCCCG 60.724 47.826 0.00 0.00 0.00 6.13
3044 4345 3.187842 ACGTGAAGTTCGAAAATAAGCCC 59.812 43.478 0.00 0.00 0.00 5.19
3045 4346 4.400036 ACGTGAAGTTCGAAAATAAGCC 57.600 40.909 0.00 0.00 0.00 4.35
3046 4347 5.202640 ACAACGTGAAGTTCGAAAATAAGC 58.797 37.500 0.00 0.00 42.02 3.09
3047 4348 7.659290 AAACAACGTGAAGTTCGAAAATAAG 57.341 32.000 0.00 0.00 42.02 1.73
3048 4349 8.450385 AAAAACAACGTGAAGTTCGAAAATAA 57.550 26.923 0.00 0.00 42.02 1.40
3050 4351 6.937886 AAAAACAACGTGAAGTTCGAAAAT 57.062 29.167 0.00 0.00 42.02 1.82
3070 4371 5.484715 CCCGTGTCCTTCATACTCTAAAAA 58.515 41.667 0.00 0.00 0.00 1.94
3071 4372 4.081309 CCCCGTGTCCTTCATACTCTAAAA 60.081 45.833 0.00 0.00 0.00 1.52
3072 4373 3.449737 CCCCGTGTCCTTCATACTCTAAA 59.550 47.826 0.00 0.00 0.00 1.85
3073 4374 3.028850 CCCCGTGTCCTTCATACTCTAA 58.971 50.000 0.00 0.00 0.00 2.10
3074 4375 2.024655 ACCCCGTGTCCTTCATACTCTA 60.025 50.000 0.00 0.00 0.00 2.43
3075 4376 1.273098 ACCCCGTGTCCTTCATACTCT 60.273 52.381 0.00 0.00 0.00 3.24
3076 4377 1.192428 ACCCCGTGTCCTTCATACTC 58.808 55.000 0.00 0.00 0.00 2.59
3077 4378 2.105766 GTACCCCGTGTCCTTCATACT 58.894 52.381 0.00 0.00 0.00 2.12
3078 4379 2.100418 GAGTACCCCGTGTCCTTCATAC 59.900 54.545 0.00 0.00 0.00 2.39
3079 4380 2.381911 GAGTACCCCGTGTCCTTCATA 58.618 52.381 0.00 0.00 0.00 2.15
3080 4381 1.192428 GAGTACCCCGTGTCCTTCAT 58.808 55.000 0.00 0.00 0.00 2.57
3081 4382 1.246056 CGAGTACCCCGTGTCCTTCA 61.246 60.000 0.00 0.00 0.00 3.02
3082 4383 0.962356 TCGAGTACCCCGTGTCCTTC 60.962 60.000 5.37 0.00 0.00 3.46
3083 4384 0.964358 CTCGAGTACCCCGTGTCCTT 60.964 60.000 3.62 0.00 0.00 3.36
3084 4385 1.378250 CTCGAGTACCCCGTGTCCT 60.378 63.158 3.62 0.00 0.00 3.85
3085 4386 3.061260 GCTCGAGTACCCCGTGTCC 62.061 68.421 15.13 0.00 0.00 4.02
3086 4387 1.664321 ATGCTCGAGTACCCCGTGTC 61.664 60.000 15.13 0.00 0.00 3.67
3087 4388 1.681327 ATGCTCGAGTACCCCGTGT 60.681 57.895 15.13 0.00 0.00 4.49
3088 4389 1.226974 CATGCTCGAGTACCCCGTG 60.227 63.158 15.13 4.60 0.00 4.94
3089 4390 2.423898 CCATGCTCGAGTACCCCGT 61.424 63.158 15.13 0.00 0.00 5.28
3090 4391 2.076622 CTCCATGCTCGAGTACCCCG 62.077 65.000 15.13 0.00 0.00 5.73
3091 4392 1.742768 CTCCATGCTCGAGTACCCC 59.257 63.158 15.13 0.00 0.00 4.95
3092 4393 0.755698 TCCTCCATGCTCGAGTACCC 60.756 60.000 15.13 0.00 0.00 3.69
3093 4394 1.000283 CATCCTCCATGCTCGAGTACC 60.000 57.143 15.13 0.00 0.00 3.34
3094 4395 1.957177 TCATCCTCCATGCTCGAGTAC 59.043 52.381 15.13 0.00 31.70 2.73
3095 4396 2.234143 CTCATCCTCCATGCTCGAGTA 58.766 52.381 15.13 10.57 31.70 2.59
3096 4397 1.039068 CTCATCCTCCATGCTCGAGT 58.961 55.000 15.13 0.00 31.70 4.18
3097 4398 1.039068 ACTCATCCTCCATGCTCGAG 58.961 55.000 8.45 8.45 31.70 4.04
3098 4399 1.137675 CAACTCATCCTCCATGCTCGA 59.862 52.381 0.00 0.00 31.70 4.04
3099 4400 1.134580 ACAACTCATCCTCCATGCTCG 60.135 52.381 0.00 0.00 31.70 5.03
3100 4401 2.681848 CAACAACTCATCCTCCATGCTC 59.318 50.000 0.00 0.00 31.70 4.26
3101 4402 2.040813 ACAACAACTCATCCTCCATGCT 59.959 45.455 0.00 0.00 31.70 3.79
3102 4403 2.163010 CACAACAACTCATCCTCCATGC 59.837 50.000 0.00 0.00 31.70 4.06
3103 4404 2.163010 GCACAACAACTCATCCTCCATG 59.837 50.000 0.00 0.00 0.00 3.66
3104 4405 2.440409 GCACAACAACTCATCCTCCAT 58.560 47.619 0.00 0.00 0.00 3.41
3105 4406 1.877680 CGCACAACAACTCATCCTCCA 60.878 52.381 0.00 0.00 0.00 3.86
3106 4407 0.798776 CGCACAACAACTCATCCTCC 59.201 55.000 0.00 0.00 0.00 4.30
3107 4408 1.795768 TCGCACAACAACTCATCCTC 58.204 50.000 0.00 0.00 0.00 3.71
3108 4409 2.079158 CATCGCACAACAACTCATCCT 58.921 47.619 0.00 0.00 0.00 3.24
3109 4410 1.466360 GCATCGCACAACAACTCATCC 60.466 52.381 0.00 0.00 0.00 3.51
3110 4411 1.787989 CGCATCGCACAACAACTCATC 60.788 52.381 0.00 0.00 0.00 2.92
3111 4412 0.166597 CGCATCGCACAACAACTCAT 59.833 50.000 0.00 0.00 0.00 2.90
3112 4413 1.157257 ACGCATCGCACAACAACTCA 61.157 50.000 0.00 0.00 0.00 3.41
3113 4414 0.722469 CACGCATCGCACAACAACTC 60.722 55.000 0.00 0.00 0.00 3.01
3114 4415 1.157257 TCACGCATCGCACAACAACT 61.157 50.000 0.00 0.00 0.00 3.16
3115 4416 0.110238 ATCACGCATCGCACAACAAC 60.110 50.000 0.00 0.00 0.00 3.32
3116 4417 0.590682 AATCACGCATCGCACAACAA 59.409 45.000 0.00 0.00 0.00 2.83
3117 4418 0.110283 CAATCACGCATCGCACAACA 60.110 50.000 0.00 0.00 0.00 3.33
3118 4419 0.794229 CCAATCACGCATCGCACAAC 60.794 55.000 0.00 0.00 0.00 3.32
3119 4420 1.233950 ACCAATCACGCATCGCACAA 61.234 50.000 0.00 0.00 0.00 3.33
3120 4421 1.233950 AACCAATCACGCATCGCACA 61.234 50.000 0.00 0.00 0.00 4.57
3121 4422 0.794229 CAACCAATCACGCATCGCAC 60.794 55.000 0.00 0.00 0.00 5.34
3122 4423 1.233950 ACAACCAATCACGCATCGCA 61.234 50.000 0.00 0.00 0.00 5.10
3123 4424 0.724549 TACAACCAATCACGCATCGC 59.275 50.000 0.00 0.00 0.00 4.58
3124 4425 2.866156 AGATACAACCAATCACGCATCG 59.134 45.455 0.00 0.00 0.00 3.84
3125 4426 3.623060 ACAGATACAACCAATCACGCATC 59.377 43.478 0.00 0.00 0.00 3.91
3126 4427 3.374988 CACAGATACAACCAATCACGCAT 59.625 43.478 0.00 0.00 0.00 4.73
3127 4428 2.741517 CACAGATACAACCAATCACGCA 59.258 45.455 0.00 0.00 0.00 5.24
3128 4429 2.095853 CCACAGATACAACCAATCACGC 59.904 50.000 0.00 0.00 0.00 5.34
3129 4430 3.595173 TCCACAGATACAACCAATCACG 58.405 45.455 0.00 0.00 0.00 4.35
3130 4431 6.515272 AAATCCACAGATACAACCAATCAC 57.485 37.500 0.00 0.00 30.42 3.06
3131 4432 5.353956 CGAAATCCACAGATACAACCAATCA 59.646 40.000 0.00 0.00 30.42 2.57
3132 4433 5.354234 ACGAAATCCACAGATACAACCAATC 59.646 40.000 0.00 0.00 30.42 2.67
3133 4434 5.253330 ACGAAATCCACAGATACAACCAAT 58.747 37.500 0.00 0.00 30.42 3.16
3134 4435 4.647611 ACGAAATCCACAGATACAACCAA 58.352 39.130 0.00 0.00 30.42 3.67
3135 4436 4.280436 ACGAAATCCACAGATACAACCA 57.720 40.909 0.00 0.00 30.42 3.67
3136 4437 4.809426 CCTACGAAATCCACAGATACAACC 59.191 45.833 0.00 0.00 30.42 3.77
3137 4438 4.270325 GCCTACGAAATCCACAGATACAAC 59.730 45.833 0.00 0.00 30.42 3.32
3138 4439 4.081365 TGCCTACGAAATCCACAGATACAA 60.081 41.667 0.00 0.00 30.42 2.41
3139 4440 3.449377 TGCCTACGAAATCCACAGATACA 59.551 43.478 0.00 0.00 30.42 2.29
3140 4441 4.051922 CTGCCTACGAAATCCACAGATAC 58.948 47.826 0.00 0.00 30.42 2.24
3141 4442 3.069586 CCTGCCTACGAAATCCACAGATA 59.930 47.826 0.00 0.00 30.42 1.98
3142 4443 2.158900 CCTGCCTACGAAATCCACAGAT 60.159 50.000 0.00 0.00 0.00 2.90
3143 4444 1.207089 CCTGCCTACGAAATCCACAGA 59.793 52.381 0.00 0.00 0.00 3.41
3144 4445 1.207089 TCCTGCCTACGAAATCCACAG 59.793 52.381 0.00 0.00 0.00 3.66
3145 4446 1.207089 CTCCTGCCTACGAAATCCACA 59.793 52.381 0.00 0.00 0.00 4.17
3146 4447 1.941325 CTCCTGCCTACGAAATCCAC 58.059 55.000 0.00 0.00 0.00 4.02
3147 4448 0.178068 GCTCCTGCCTACGAAATCCA 59.822 55.000 0.00 0.00 0.00 3.41
3148 4449 0.178068 TGCTCCTGCCTACGAAATCC 59.822 55.000 0.00 0.00 38.71 3.01
3149 4450 1.137086 TCTGCTCCTGCCTACGAAATC 59.863 52.381 0.00 0.00 38.71 2.17
3150 4451 1.195115 TCTGCTCCTGCCTACGAAAT 58.805 50.000 0.00 0.00 38.71 2.17
3151 4452 0.973632 TTCTGCTCCTGCCTACGAAA 59.026 50.000 0.00 0.00 38.71 3.46
3152 4453 0.532573 CTTCTGCTCCTGCCTACGAA 59.467 55.000 0.00 0.00 38.71 3.85
3153 4454 1.323271 CCTTCTGCTCCTGCCTACGA 61.323 60.000 0.00 0.00 38.71 3.43
3154 4455 1.142748 CCTTCTGCTCCTGCCTACG 59.857 63.158 0.00 0.00 38.71 3.51
3155 4456 1.524482 CCCTTCTGCTCCTGCCTAC 59.476 63.158 0.00 0.00 38.71 3.18
3156 4457 1.690633 CCCCTTCTGCTCCTGCCTA 60.691 63.158 0.00 0.00 38.71 3.93
3157 4458 3.013932 CCCCTTCTGCTCCTGCCT 61.014 66.667 0.00 0.00 38.71 4.75
3158 4459 4.120755 CCCCCTTCTGCTCCTGCC 62.121 72.222 0.00 0.00 38.71 4.85
3159 4460 4.811364 GCCCCCTTCTGCTCCTGC 62.811 72.222 0.00 0.00 40.20 4.85
3160 4461 3.013932 AGCCCCCTTCTGCTCCTG 61.014 66.667 0.00 0.00 30.33 3.86
3161 4462 2.690510 GAGCCCCCTTCTGCTCCT 60.691 66.667 0.08 0.00 46.50 3.69
3164 4465 3.409384 GAAGAGCCCCCTTCTGCT 58.591 61.111 0.00 0.00 39.44 4.24
3168 4469 2.273776 GCCAGAAGAGCCCCCTTC 59.726 66.667 0.00 0.00 42.07 3.46
3169 4470 2.532715 TGCCAGAAGAGCCCCCTT 60.533 61.111 0.00 0.00 0.00 3.95
3170 4471 3.013932 CTGCCAGAAGAGCCCCCT 61.014 66.667 0.00 0.00 0.00 4.79
3171 4472 4.811364 GCTGCCAGAAGAGCCCCC 62.811 72.222 0.00 0.00 0.00 5.40
3176 4477 3.485431 CACGCGCTGCCAGAAGAG 61.485 66.667 5.73 0.00 0.00 2.85
3183 4484 4.183686 AATCATGCACGCGCTGCC 62.184 61.111 24.00 11.53 46.51 4.85
3185 4486 0.248336 AATGAATCATGCACGCGCTG 60.248 50.000 5.73 5.02 39.64 5.18
3186 4487 0.452987 AAATGAATCATGCACGCGCT 59.547 45.000 5.73 0.00 39.64 5.92
3187 4488 2.103898 TAAATGAATCATGCACGCGC 57.896 45.000 5.73 0.00 39.24 6.86
3188 4489 2.460041 CGTTAAATGAATCATGCACGCG 59.540 45.455 3.53 3.53 0.00 6.01
3189 4490 2.214020 GCGTTAAATGAATCATGCACGC 59.786 45.455 22.43 22.43 38.85 5.34
3190 4491 2.460041 CGCGTTAAATGAATCATGCACG 59.540 45.455 14.19 14.19 0.00 5.34
3191 4492 2.214020 GCGCGTTAAATGAATCATGCAC 59.786 45.455 8.43 0.00 0.00 4.57
3192 4493 2.449189 GCGCGTTAAATGAATCATGCA 58.551 42.857 8.43 0.00 0.00 3.96
3193 4494 1.444269 CGCGCGTTAAATGAATCATGC 59.556 47.619 24.19 0.00 0.00 4.06
3194 4495 2.967781 TCGCGCGTTAAATGAATCATG 58.032 42.857 30.98 0.00 0.00 3.07
3195 4496 3.666883 TTCGCGCGTTAAATGAATCAT 57.333 38.095 30.98 0.00 0.00 2.45
3196 4497 3.412654 CTTTCGCGCGTTAAATGAATCA 58.587 40.909 30.98 1.78 0.00 2.57
3197 4498 2.211143 GCTTTCGCGCGTTAAATGAATC 59.789 45.455 30.98 5.99 0.00 2.52
3198 4499 2.173964 GCTTTCGCGCGTTAAATGAAT 58.826 42.857 30.98 0.00 0.00 2.57
3199 4500 1.069838 TGCTTTCGCGCGTTAAATGAA 60.070 42.857 30.98 12.06 39.65 2.57
3200 4501 0.513385 TGCTTTCGCGCGTTAAATGA 59.487 45.000 30.98 5.11 39.65 2.57
3201 4502 0.628289 GTGCTTTCGCGCGTTAAATG 59.372 50.000 30.98 18.84 39.65 2.32
3202 4503 2.995938 GTGCTTTCGCGCGTTAAAT 58.004 47.368 30.98 0.00 39.65 1.40
3203 4504 4.500520 GTGCTTTCGCGCGTTAAA 57.499 50.000 30.98 21.90 39.65 1.52
3209 4510 1.330080 GACACAATGTGCTTTCGCGC 61.330 55.000 14.01 0.00 46.63 6.86
3210 4511 1.054348 CGACACAATGTGCTTTCGCG 61.054 55.000 14.01 0.00 36.98 5.87
3211 4512 0.041312 ACGACACAATGTGCTTTCGC 60.041 50.000 19.93 2.08 36.98 4.70
3212 4513 2.219903 TGTACGACACAATGTGCTTTCG 59.780 45.455 18.87 18.87 36.98 3.46
3213 4514 3.870723 TGTACGACACAATGTGCTTTC 57.129 42.857 14.01 2.82 36.98 2.62
3221 4522 9.673811 GATGATGTGCATGTTGTACGACACAAT 62.674 40.741 18.29 7.68 42.45 2.71
3222 4523 2.280628 TGTGCATGTTGTACGACACAA 58.719 42.857 18.29 4.32 44.97 3.33
3223 4524 1.941325 TGTGCATGTTGTACGACACA 58.059 45.000 18.29 10.00 35.67 3.72
3224 4525 2.478514 TGATGTGCATGTTGTACGACAC 59.521 45.455 18.29 7.44 35.67 3.67
3225 4526 2.760374 TGATGTGCATGTTGTACGACA 58.240 42.857 18.23 18.23 35.67 4.35
3226 4527 3.242413 GGATGATGTGCATGTTGTACGAC 60.242 47.826 6.27 6.27 37.34 4.34
3227 4528 2.935849 GGATGATGTGCATGTTGTACGA 59.064 45.455 0.00 0.00 37.34 3.43
3228 4529 2.677337 TGGATGATGTGCATGTTGTACG 59.323 45.455 0.00 0.00 37.34 3.67
3229 4530 4.906065 ATGGATGATGTGCATGTTGTAC 57.094 40.909 0.00 0.00 37.51 2.90
3236 4537 1.335810 GCGTTCATGGATGATGTGCAT 59.664 47.619 0.00 0.00 39.77 3.96
3237 4538 0.734309 GCGTTCATGGATGATGTGCA 59.266 50.000 0.00 0.00 36.56 4.57
3238 4539 0.734309 TGCGTTCATGGATGATGTGC 59.266 50.000 0.00 0.00 36.56 4.57
3239 4540 3.181494 ACATTGCGTTCATGGATGATGTG 60.181 43.478 0.00 0.00 36.56 3.21
3240 4541 3.018856 ACATTGCGTTCATGGATGATGT 58.981 40.909 0.00 0.00 36.56 3.06
3241 4542 3.065648 TCACATTGCGTTCATGGATGATG 59.934 43.478 0.00 0.00 36.56 3.07
3242 4543 3.281158 TCACATTGCGTTCATGGATGAT 58.719 40.909 0.00 0.00 36.56 2.45
3243 4544 2.709213 TCACATTGCGTTCATGGATGA 58.291 42.857 0.00 0.00 34.44 2.92
3244 4545 3.119743 ACTTCACATTGCGTTCATGGATG 60.120 43.478 0.00 0.00 0.00 3.51
3245 4546 3.084039 ACTTCACATTGCGTTCATGGAT 58.916 40.909 0.00 0.00 0.00 3.41
3246 4547 2.483877 GACTTCACATTGCGTTCATGGA 59.516 45.455 0.00 0.00 0.00 3.41
3247 4548 2.725759 CGACTTCACATTGCGTTCATGG 60.726 50.000 0.00 0.00 0.00 3.66
3248 4549 2.096268 ACGACTTCACATTGCGTTCATG 60.096 45.455 0.00 0.00 0.00 3.07
3249 4550 2.143122 ACGACTTCACATTGCGTTCAT 58.857 42.857 0.00 0.00 0.00 2.57
3250 4551 1.577468 ACGACTTCACATTGCGTTCA 58.423 45.000 0.00 0.00 0.00 3.18
3251 4552 2.663279 AACGACTTCACATTGCGTTC 57.337 45.000 0.00 0.00 40.68 3.95
3252 4553 3.059868 CACTAACGACTTCACATTGCGTT 60.060 43.478 0.00 0.00 45.62 4.84
3253 4554 2.475111 CACTAACGACTTCACATTGCGT 59.525 45.455 0.00 0.00 36.68 5.24
3254 4555 2.475111 ACACTAACGACTTCACATTGCG 59.525 45.455 0.00 0.00 0.00 4.85
3255 4556 5.498700 CGATACACTAACGACTTCACATTGC 60.499 44.000 0.00 0.00 0.00 3.56
3256 4557 5.798434 TCGATACACTAACGACTTCACATTG 59.202 40.000 0.00 0.00 0.00 2.82
3257 4558 5.946298 TCGATACACTAACGACTTCACATT 58.054 37.500 0.00 0.00 0.00 2.71
3258 4559 5.556355 TCGATACACTAACGACTTCACAT 57.444 39.130 0.00 0.00 0.00 3.21
3259 4560 5.329493 CATCGATACACTAACGACTTCACA 58.671 41.667 0.00 0.00 38.79 3.58
3260 4561 4.733887 CCATCGATACACTAACGACTTCAC 59.266 45.833 0.00 0.00 38.79 3.18
3261 4562 4.397103 ACCATCGATACACTAACGACTTCA 59.603 41.667 0.00 0.00 38.79 3.02
3262 4563 4.918037 ACCATCGATACACTAACGACTTC 58.082 43.478 0.00 0.00 38.79 3.01
3263 4564 4.978083 ACCATCGATACACTAACGACTT 57.022 40.909 0.00 0.00 38.79 3.01
3264 4565 4.877823 TGTACCATCGATACACTAACGACT 59.122 41.667 0.00 0.00 38.79 4.18
3265 4566 5.160699 TGTACCATCGATACACTAACGAC 57.839 43.478 0.00 0.00 38.79 4.34
3266 4567 5.528320 TGATGTACCATCGATACACTAACGA 59.472 40.000 0.00 0.00 35.43 3.85
3267 4568 5.754778 TGATGTACCATCGATACACTAACG 58.245 41.667 0.00 0.00 35.43 3.18
3268 4569 6.807230 GGATGATGTACCATCGATACACTAAC 59.193 42.308 0.00 0.00 42.83 2.34
3269 4570 6.492087 TGGATGATGTACCATCGATACACTAA 59.508 38.462 0.00 0.00 42.83 2.24
3270 4571 6.007703 TGGATGATGTACCATCGATACACTA 58.992 40.000 0.00 0.00 42.83 2.74
3271 4572 4.832823 TGGATGATGTACCATCGATACACT 59.167 41.667 0.00 0.00 42.83 3.55
3272 4573 5.048013 TCTGGATGATGTACCATCGATACAC 60.048 44.000 0.00 0.00 42.83 2.90
3273 4574 5.048013 GTCTGGATGATGTACCATCGATACA 60.048 44.000 0.00 0.00 42.83 2.29
3274 4575 5.403246 GTCTGGATGATGTACCATCGATAC 58.597 45.833 0.00 0.00 42.83 2.24
3275 4576 4.462834 GGTCTGGATGATGTACCATCGATA 59.537 45.833 0.00 0.00 42.83 2.92
3276 4577 3.259374 GGTCTGGATGATGTACCATCGAT 59.741 47.826 0.00 0.00 42.83 3.59
3277 4578 2.628178 GGTCTGGATGATGTACCATCGA 59.372 50.000 6.16 0.00 42.83 3.59
3278 4579 2.365293 TGGTCTGGATGATGTACCATCG 59.635 50.000 6.16 0.00 42.83 3.84
3279 4580 3.495100 GGTGGTCTGGATGATGTACCATC 60.495 52.174 0.00 4.10 41.93 3.51
3280 4581 2.439507 GGTGGTCTGGATGATGTACCAT 59.560 50.000 0.00 0.00 41.93 3.55
3281 4582 1.837439 GGTGGTCTGGATGATGTACCA 59.163 52.381 0.00 0.00 37.88 3.25
3282 4583 1.202533 CGGTGGTCTGGATGATGTACC 60.203 57.143 0.00 0.00 0.00 3.34
3283 4584 1.480954 ACGGTGGTCTGGATGATGTAC 59.519 52.381 0.00 0.00 0.00 2.90
3284 4585 1.754803 GACGGTGGTCTGGATGATGTA 59.245 52.381 0.00 0.00 40.15 2.29
3285 4586 0.537188 GACGGTGGTCTGGATGATGT 59.463 55.000 0.00 0.00 40.15 3.06
3286 4587 0.536724 TGACGGTGGTCTGGATGATG 59.463 55.000 0.00 0.00 43.79 3.07
3287 4588 0.537188 GTGACGGTGGTCTGGATGAT 59.463 55.000 0.00 0.00 43.79 2.45
3288 4589 1.541310 GGTGACGGTGGTCTGGATGA 61.541 60.000 0.00 0.00 43.79 2.92
3289 4590 1.079127 GGTGACGGTGGTCTGGATG 60.079 63.158 0.00 0.00 43.79 3.51
3290 4591 0.909610 ATGGTGACGGTGGTCTGGAT 60.910 55.000 0.00 0.00 43.79 3.41
3291 4592 1.535444 ATGGTGACGGTGGTCTGGA 60.535 57.895 0.00 0.00 43.79 3.86
3292 4593 1.375908 CATGGTGACGGTGGTCTGG 60.376 63.158 0.00 0.00 43.79 3.86
3293 4594 0.250295 AACATGGTGACGGTGGTCTG 60.250 55.000 0.00 0.00 43.79 3.51
3294 4595 0.472471 AAACATGGTGACGGTGGTCT 59.528 50.000 0.00 0.00 43.79 3.85
3295 4596 1.001815 CAAAACATGGTGACGGTGGTC 60.002 52.381 0.00 0.00 43.71 4.02
3296 4597 1.028905 CAAAACATGGTGACGGTGGT 58.971 50.000 0.00 0.00 0.00 4.16
3297 4598 1.028905 ACAAAACATGGTGACGGTGG 58.971 50.000 0.00 0.00 0.00 4.61
3298 4599 1.268999 CCACAAAACATGGTGACGGTG 60.269 52.381 0.00 0.00 37.18 4.94
3299 4600 1.028905 CCACAAAACATGGTGACGGT 58.971 50.000 0.00 0.00 37.18 4.83
3300 4601 3.863681 CCACAAAACATGGTGACGG 57.136 52.632 0.00 0.00 37.18 4.79
3306 4607 0.103937 AACCGCACCACAAAACATGG 59.896 50.000 0.00 0.00 43.43 3.66
3307 4608 1.202348 TCAACCGCACCACAAAACATG 60.202 47.619 0.00 0.00 0.00 3.21
3308 4609 1.107114 TCAACCGCACCACAAAACAT 58.893 45.000 0.00 0.00 0.00 2.71
3309 4610 1.107114 ATCAACCGCACCACAAAACA 58.893 45.000 0.00 0.00 0.00 2.83
3310 4611 3.241701 CATATCAACCGCACCACAAAAC 58.758 45.455 0.00 0.00 0.00 2.43
3311 4612 2.352225 GCATATCAACCGCACCACAAAA 60.352 45.455 0.00 0.00 0.00 2.44
3312 4613 1.201181 GCATATCAACCGCACCACAAA 59.799 47.619 0.00 0.00 0.00 2.83
3313 4614 0.808125 GCATATCAACCGCACCACAA 59.192 50.000 0.00 0.00 0.00 3.33
3314 4615 1.029408 GGCATATCAACCGCACCACA 61.029 55.000 0.00 0.00 0.00 4.17
3315 4616 1.727467 GGCATATCAACCGCACCAC 59.273 57.895 0.00 0.00 0.00 4.16
3316 4617 1.817520 CGGCATATCAACCGCACCA 60.818 57.895 0.00 0.00 43.44 4.17
3317 4618 3.022287 CGGCATATCAACCGCACC 58.978 61.111 0.00 0.00 43.44 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.