>input_sequence_54110
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-----------------------------------------------------------ATGCGGTGGTGGCAGTGCCGC
CTCGCGGCTGCCGTGGCCCTGCTCGCCGCCGTGCTGGCTCTGGGCGCCGCGGGGCCGCGCTCGCCGGCGCCGCTGCGGTT
CGCGCCGGGTGGCCGGTTCAAGCTGGCGCTGTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCG
CGCAGGACGACGCCTCCGACCGCGTCATGGCCGCCGTGCTCGACGCCGAGAACCCAGGTGAGCGTGCTAGTCCAGTCTGG
TGGCCGCCCCATTCCCTCCCCCCTGTTCAAGCGGATTCTAGTTAC------TAG--------------------TTTCG-
TCCAAATTAGGAATTTTCTGAAGGAATCGTCCGCAGACTTCGTGGTGTACCTCGGCGACCTCGTGACGGCGAACAACGTG
CCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGATCTCCCCGGCCAGGCGCAGGGGCGTCCCGTGGTCCACGGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGGGCGTCCCGCCGGTGCACTGCCCGC
CTGCCGCG------------TCGGCCATGCCAGAGCCGGACC--------------------------------------
------------------------------------CAGGGTGCATCTTCCGGGGCACGCCGCGGGTCGAGCTGATGACG
GCCGAGCTCGACCGGGCTTG------CGGGCTGTCGCGCTCCTCGGTCGGCCCCCGGGAGCTCTGGCCCGGCGTCTCCAA
CTACGTGCTGCAGGTGCTCTCGCACGAGAAGCCACATGACCCTGCTCTGCTCATGTATTTCCTCGACTCCGGCGGCGGAT
CCTACCCGGAGGTCGTATCCTGCGCACAGGTCACGTGGTTCCACAGCCAGTCTCGGTTCCTCAATCCAGATGGC------
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------------------------------AGGATCCCTGAGCTGGTATTCTGGCACGTACCGAGCACGGCGTACGTCAA
GGTGGCTCCGAAGGCCACGAGCGAGGTCAGGAAGCCCTGCGTCGGCAGTCTCAACGAGGAAGACGTGGCGCCACAGGTGG
CCGAATGGGGCATGATGGACGCTCTTGCCCACAGGCCTTCAGTTAAGGTATCTGAAT---------TCTGAAACTCTGAA
ACTCTGAGTACTAGCACGTCTAA---------------------------TTGATGTGTGCATCTATCTTGTATTGTGTA
GGCGATCTTCGTGGGGCACAACCACGGGCTGGACTGGTGCTGCCCCTACGAGAAACTGTGGCTGTGCTTCGCGCGGCACA
CGGGGCACGGAGGGTACGGTGACTGGCCAAGAGGG-GCGAGGATCGTTGAGGTCGCTGAAAA---AAAGCATTTCTCTGT
CAACTCCTGGATCCGGATGGAGAATGGGTCCACGCACAGCCATGTTACCTTGAGCTCTGCTCGGTTTA--GTTAG-----
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>chr2D_1_TraesCS2D01G172500
AAATACGACAACGACAACACTTGCATCTGGGTTCTTCGTCACAGGTTCCGCAGGTTCCCTGTCAGCTGGCTTCGGGCGGG
CAGCGTCCACAAAGGGAGCCCCGTCATCGCCCCCACCAGCCTTCAGATTCGCCGCAGATGCCCCAGACTCGAGCCCCACT
GGTAGCACGGGAGTGGTCGGCGCCGCCGCTCTCTTCAACATCGCAGGTCGTCGGGCTCGTGCACGAACCCGGTCAGGAGG
GTCACAAGCCTTGGCTTCCGGCTCCTTGATCACCCTAGGGCTTCTTGATTTGGTTACAACGATCCCATCTCTATCCTTAG
CGGACCCCTGTCGACGATCGAACCCGGCGCTGCCCATACGTTCCTGACCGATCTGATCTCCAACGGGACCGCCAGGAACA
CGAGGGTTCAGCGGTGCGAGGGCGAACGAGGCCGCAACAGGGCCATAACACGGTCGGGCGGCGTGCATGGCAACATAGCC
GACAACGACGAGACCAAGGTCCCGCGGCT------------------GCGGCGAGATCGCCCCTGAGTCGCCTAAACCTA
ACATTTTTTAACATGCATTCCCCTGCAAGAAAGTTAAAGTGTGTTGTCTGTTTAAATTTCCGGTTTTCAATTTTTGGAGA
AACAACTAGGAGGGTCCTAAAGTCTGGTCGTGGCGGTGTTCGGCATGGACTGCTGTATGCCTTGTATCTACTCTACTCGA
CTCGCAAGACGACGAGCCCGCTGGTGCCGACCGAGAATATTCTCGGTGCATGCAGCCGCATATTCCAGCTTTTT------
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-------------------------TTTTTCCTTTCGTTTTCACGTACTAGTACGAGCTTTACGAGGTGAGGTGCCAGGT
ACTTCTCCGCCGACAGTGACCGTGACCGATCGGAGCTGCGGTGCAGAGGCAGCTTTCTTTTTTTTC-CTCGAAATTTTCC
CCAGATATTGGATCGTGGGTCTGCTGC-----------------------------------------------------
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------------------------------------------------------------------------CACATTCA
TCCACGCTTGACTCCAACAGAGC-TTAACGGCCA---CCGTCCACCGAGCGCGCGCCAGATGCGGTGGTGGCAGTGCCGC
CTCGCGGCTGCCGTGGCCCTGCTCGCCGCCGTGCTGGCTCTGGGCGCCGCGGGGCCGCGCTCGCCGGCGCCGCTGCGGTT
CGCGCCGGGTGGCCGGTTCAAGCTGGCGCTGTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCG
CGCAGGACGACGCCTCCGACCGCGTCATGGCCGCCGTGCTCGACGCCGAGAACCCAGGTGAGCGTGCTAGTCCAGTCTGG
TGGCCGCCCCATTCCCTCCCCCCTGTTCAAGCGGATTCTAGTTAC------TAG--------------------TTTCG-
TCCAAATTAGGAATTTTCTGAAGGAATCGTCCGCAGACTTCGTGGTGTACCTCGGCGACCTCGTGACGGCGAACAACGTG
CCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGATCTCCCCGGCCAGGCGCAGGGGCGTCCCGTGGTCCACGGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGGGCGTCCCGCCGGTGCACTGCCCGC
CTGCCGCG------------TCGGCCATGCCAGAGCCGGACC--------------------------------------
------------------------------------CAGGGTGCATCTTCCGGGGCACGCCGCGGGTCGAGCTGATGACG
GCCGAGCTCGACCGGGCTTG------CGGGCTGTCGCGCTCCTCGGTCGGCCCCCGGGAGCTCTGGCCCGGCGTCTCCAA
CTACGTGCTGCAGGTGCTCTCGCACGAGAAGCCACATGACCCTGCTCTGCTCATGTATTTCCTCGACTCCGGCGGCGGAT
CCTACCCGGAGGTCGTATCCTGCGCACAGGTCACGTGGTTCCACAGCCAGTCTCGGTTCCTCAATCCAGATGGC------
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------------------------------AGGATCCCTGAGCTGGTATTCTGGCACGTACCGAGCACGGCGTACGTCAA
GGTGGCTCCGAAGGCCACGAGCGAGGTCAGGAAGCCCTGCGTCGGCAGTCTCAACGAGGAAGACGTGGCGCCACAGGTGG
CCGAATGGGGCATGATGGACGCTCTTGCCCACAGGCCTTCAGTTAAGGTATCTGAAT---------TCTGAAACTCTGAA
ACTCTGAGTACTAGCACGTCTAA---------------------------TTGATGTGTGCATCTATCTTGTATTGTGTA
GGCGATCTTCGTGGGGCACAACCACGGGCTGGACTGGTGCTGCCCCTACGAGAAACTGTGGCTGTGCTTCGCGCGGCACA
CGGGGCACGGAGGGTACGGTGACTGGCCAAGAGGG-GCGAGGATCGTTGAGGTCGCTGAAAA---AAAGCATTTCTCTGT
CAACTCCTGGATCCGGATGGAGAATGGGTCCACGCACAGCCATGTTACCTTGAGCTCTGCTCGGTTTA--GTTAGGTTCA
GACTCGTTTGCCCTAGCTAGGATGTGTTCAGTTTGGAAAGTCCATTG--------CAGTGCAAACAGTA----TTCGATT
TAGTTAGGGCATCCTATAGCGGATCCTTAAATTGTCTGCATCCCTTCGGCCCGCACGGTCCAGACGTGTTTACCGTCCAA
CGAGGACATTT--ATCGATCCCCCGGCCGGTTCGGACCT---TCTTTTCCCCCTAAATGGAGGGGT--------------
--TCGCGAGAGTCCGGACAACAATTACGTAGGACTCCGAGAACCCTCGGCCC-ACTCAAATCCC-TCCCGGTCTCATTCT
CTTCCATTCTGCCCCTACTCCCTCTTGC-TTGCATCTGCGCCCCCTC----CT---CCGTCGCCGTTGTACCTCTCCGGC
CGCCACCCAGGCATTGCCGGACATCTGC-AACCACCACCCATGCACCCGCTCACCTTGTACTACAACACCGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTG
ACAGTTGTTTGGTCAAATGCCATCGGGCTTATTTTCGAACTTCACGTTGTTTTTTAGAGTATGAAGGACACGGGGTACTC
GAGCATGGAGGATGAGTTGTTGTGCGATGCGTGATTGGTTGTATCTGTGGATTTCGTAGGCAGGAGCAGAAGGGGGCTCT
TCTGGCAGCGCGTGCATGATTCATTTAACGCGCGAAAGCACATTGTGTCGTACAACATGCACATCATCCATGAACGCAAT
GTGAAGTCGTTAGTGTATCGATGGTACATCATCCAGACCACCGTCACCATGTTTTGTGGTGCGGTTGATATGCCGGAGG
>chr7D_1
AAATACGACAACGACAACACTTGCATCTGGGTTCTCCGTCACAGGTTCCGCAGGTTCCCTGTCAGCTGGCTTCGGGCGGG
CAGCGTCCACAAAGGGAGCCCCGTGATCGCCCCCACCAGCTTTCAGATTCGCCGCAGATGCCCCAGACTCGAGCCCCACT
GGTAGCACGGGAGTGGTCGGCGCCGCCGCTCTCTTCAACATCGCAGGTCGTCGGGCTCGTGCATGAACCCGGTCAGGAGG
GTCACAAGCCTTGGCTTCCGGCTCCTTGATCACCCTAGGGCTTCTTGATTTGGCTACAACGATCCCATCTCTATCCTTAG
CGGACCCCTGTCGACGATCGAACCCGGCGCTGCCCATACGTTCCTGACCGATCTGATCTCCAACGGGACCGCCAGGAACA
CAAGGGTTCAGTGGTGCGAGGGCGGACGAGGCCGCAACAGGGCCATAACACGGCCGGGCGGCGTGCATGGCAACATAGCC
GACAACGACGAGACCAAGGTCCCGCGGCT------------------GCGGCG---------------------------
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>chr3D_1
AAATACGACAACGACAACACTTGCATCTGGGTTCTCCGTCACAGGTTCCGCAGGTTCCCTGTCAGCTGGCTTCGGGCGGG
CAGCGTCCACAAAGGGAGCCCCGTGATCGCCCCCACCAGCCTTCAGATTCGCCACAGATGCCCCAGACTGGAGCCCCACT
GGTAGCACGGGGGTGGTCGGCGCCGGCGCTCTCTTCAACATCGCAGGTCGTCGGGCTCGTGCACGGACCCGGTCAGGAGG
GTCACAAGCCTTGGCTTCCGGCTCCTTGATCACCCTAGGGCTTCTTGATTTGGCTACAACGATCCAATCTCTATCCTTAG
CGGACCCCTGTCGACGATCGAACCCGGTGCTGCCCATACGTTCCTGACCGATCTGATCTCCAACGGGACCGCCAGGAACA
CGAGGGTTCAGCGGTGCGAGGGCGGACGAGGCCGCAACAGGGCCATAACACGGCTGGGCGGCGTGCATGGCAACATAGCC
GACAACGACGAGACCAAGGTCCCGCGGCTGCGGCTGCGGTGGCGGCGGCGGCGGGATCGCCCCTGAGTCGCCTAAACCTA
ACAT----------------------------------------------------------------------------
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>chr2B_589
TCTGTTTG------------------------------------------------------------------------
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------------------------------------------------------AATTTCCGCTTTTCAAATTTTGGAGA
AACAACTAGGAGGGTCCTAAAGTTTGGCCGTGGCGGTGTTCGGCATGGACTGCT---------GTATCTACTTCACTCGA
CTCGCAATGCGCGCCGA-------TGCCGACCGAGAATATTCTCGGTGCCTGCAGCCGCATATTCCACC-TTTT------
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-------------------------TTTTCTCTTTCGTTTTTAT---GTAGTACGAGCTTTACGAGGTGAGGTGCCAGGT
AGTTCTCCGCCGACAGTGACCGTGATCGATCGCAGCTGCGGTGCAGAGGCAGCTTTCTTTTTTTTTTCTCGAAATTTTCT
CCAGATATTGGATCGTGGGTCTGCTGCTGCC-------------------------------------------------
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-----------------------------------------------------------------------ACTCATCCA
TCCACGCTTGACTCCA---GAGC-TTAACCGCCA---CGGTACACCGAGCGCGCGCCAGATGCGGTGGTGGCAGTGCCGC
CTCGCGGCTGCCGTGGCCCTGGCCGCCGCCGTGCTGGCTCTGGGCGCCGTGGGGCCGCGCTCGCCGGCGCCACTGCGGTT
CGCGCCGGGTGGCCGGTTCAAGGTGGCGCTGTTCGCCGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCG
CGCAGGACGACGCCTCCGACCACGTCATGGCCGCCGTGCTCGACGCCGAGAAGCCAGGTGCGTAATATATAA---TCCGG
TGGCCGCCTCATCCC-TCCCC--TGTGCAAGCGGATCCGAGCTGTACACTGTAG--------------------TTTCCT
TCCAAATCACC------------GAATCGTGCGCAGACTTCGTGGTGTACCTCGGCGACCTCGTGACGGCGAACAACGTG
CCGGTCGCCAACGCGAGCCTGTACTGGGACCGGGCGATCTCCCCGGCCAGGCGCAGGGGCGTCCCGTGGTCCACGGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGGGCGTCCCGCCGGTGCACTGCCCGC
CTGCCGTG------------CCGGCCAT------GCCGGACC--------------------------------------
------------------------------------CAGGGTGCAGCTTCCGGGGCACGCCGCGGGTCGAGCTGATGACG
GCCGAGCTCGACCGGGCTTG------CGGGCTGTCGCGCTCCTCGGTCGGCCCCAGGGAGCTCTGGCCCGGCGTCTCCAA
CTACGTGCTGCAGGTGCTCTCGCGCGAGAGGCCGGAGGACCCTGCTCTGCTCATGTACTTCCTCGACTCCGGCGGCGGAT
CCTACCCGGAGGTCGTATCCTGCGCACAGGTCACGTGGTTCCAGAGCCAGGCTCGGTTCCTCAATCCAGACGGC------
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------------------------------AGGATCCCTGAGCTGGTATTCTGGCACATACCGAGCACGGCCTACGTCAA
AGTGGCTCCAAAGGCCACGAGCGAGGTCAGGAAGCCCTGCGTCGGCAGTCTCAACGAGGAAGACGTGGCGCCACAGGTGG
CCGAATGGGGCATCATG---------------------------------------------------------------
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>chr2A_592
---GTTTG------------------------------------------------------------------------
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------------------------------------------------------AATTTCCGGTTTTCAAATTTTTGAGA
AACAACGAGGAGGGTCCTCAAATTTGGTCGCGGCTGTGTTCTGCATGGAATGCT---------GCATCTACTCCACTCGA
TTCGCAAGGCGACGAGCCCGCTGATGCCAACCGAGAATATTCTCGGTGCATGCAGCCGCATATTCCATTTTTTATTTTTC
TCTTGAGGTAAAAGCACAGCAAACCCAGGAACTTGTCGGGCGTGTGATGTTTTGGCCCACAAACTTGTAAAACCTCACTC
CGCCACCCACAAACTTGCAGCCGACGTGCAAAAAAACCCAAAGCAAGTCCTGACGCGACATCTAGCGGAGGCGGGGCTGA
GGCGGTCGTCGCCCGTGTTTGCAGAAACCCCCCTAGGCTTAACAGTAATAAACCCGCACCCCACATCTATTGTTCCCCAT
TCCAGCTGCAGCCAAATCTCTAGTAATGAACTTTGGGCGCCGTCTCTATCGTGCCACCCGTACTACTGTCAGCAAGAAGA
GCCACGCAGCGACATCCTCGAGGCCAATGGCAGCTTCCTGCAGGTGGCTGCTCCCCTCCGTCGGGCTGCAGAAGCAGAGT
GCACAGCCAGAGAGCGAGCAAGGGCAGCGACAAGTTCCTAGGCCTGTTGTGCTTCTGTTGTTGGGCGATACAGAGGGAGA
GACACTAAGGATTTGGCTGCCGCTGGAATGGGGAACGAGAGAGATGTGGGGTGCGGGTTTATTACTGTTAAGACCAAGGG
GGTTTCTGCAAAAGCAGGCAACGACCGCCTCGGCTCCGCCTCCGCCAGATGTCGTGTCAGGATTGGCTTTGGGTTATTTT
GCACATCAGCTGCAAGTTGGTGGGTGGCGGAGTGGGGTTTTACAAGTTTGTGGGCTGAAACATCACGCGTCTGACAAGTT
TTTGGGCCTGCCGTGCTTTTACCTCTTTTCTCTTTCGTTTTCAC---CTAGTACGAGCTTTACGAGGTGAGGTGCCAGCT
ACTTCTCCGCCGACAGTGACCGTGACCGATCGCAGCTGCGGTGCAGAGTCAGCTTTCTTTTTTTCC-CTCGAAATTTTCT
CCAGATATTGGATCGTGGGTGAGACCAGGTCTCACGGATTAGCAGGTGAGACCCATCCTGATGGATGACACGTGGCATCC
ACAAATCACAAAGCATCCACCCCACCCCCACCTGAAATCAGAGGGGAGAGATTAGATGCTTTGTGATTTGTGAATGCCAC
ATGTCATTCATCAAGGCGGGTCTCACCTGATTTATATGAGACCTGGTCTCATATAAATTTTTTCCCTGCTGACACATCCA
TCCACGTTTGACTCCA---GAGCCTTAACCGCCACGTCCGTCCACCGAGCGCGCGCCAGATGCGGCGGTGGCAGTGTCGC
CTCGCGGCTGCCGGGGCCCTGCTCGCCGTCGTGCTGGCTCTGTGCGTCGCGGGGCCGCGCTCGCCGGCGCCGCTGCGGTT
CGCGCCGGGTGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCTG
CGCAGGACGACGCCTCCGACCATGTCATGGCCGCCGTGCTCGACGCCAAGAACCCAGGTGCGTACCATATAA---TCCGG
TGGCCGCCTCATCCCCTCCCC--TGAGCAAGCGGATCCGAGCTATAGACTGTAG--------------------TTTCC-
TCCAAATCACC------------GAATCATGCGCAGACTTCATGGTGTACCTCGGCGACCTCGTGACGGCGAACAACGTG
CCGGTGGCCAACGCGAGCCTGTACTGGGACCGGGCGGTCTCCCCGGCCAGGCGCAGGGGCGTCCCGTGGTCCAAGGTGTT
CGGCAACCACGACGACATACCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCGGGCGTCTCGCCGGTGGACTGCCCGC
CCGCCGCG------------CCGGCCAT------GCCGGACC--------------------------------------
------------------------------------CAGGGTGCAGCTTCCAGGGCACGCCGTGGGTCAAGCTGATGACG
GCCGAGCTCGACCGGGCCTG------CGGGCTGTCACGCTCCTCCGTCGGGCCCGGGGAGCTCTGGCCCGGCGTCTCCAA
CTACGTGCTGCAGGTGCTCTCGCGCGAGCGGCCGAAGGACCCT-------------------------------------
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>chr3D_997
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-------------------------------------------------------CCAGATGCGGTGGTGGCTGCACCGC
CTCGCGGCTGCAGCGGCCTTCCTTGCCGCCGCGCTGGCT---------------CTGAGGTCGCCGGCGCCGCTGCGGTT
CGCGTCGGGCGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCG
CGCAGGACGCCGCCTCGGACCATGTCATGGCCACCGTGCTGGACGCCGACAAGCCAGGTTATCAGTTGCCCTGC------
------------CCCGTCCCA--TGCGTGAGCTGCGCTGAATTTTTCACTGAATTCCAGCTTTTCTCTGAATTTTTACCT
TCCAAATTACTCTTGTGCTGTATTATTG----GCAGACTTCGTGGTGTACCTCGGCGACCTCGTGACAGCCAACAACGTG
CCGATCCCCAACGCGACCCTCTACTGGGACAGGGCCATTTCTCATTCCCGACGCAGGGGCGTCCCGTGGTCCACCGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCCGGCATCCCGCCCGTGCACTGCCTAT
CAGCGGCGGCCATGCAAACCTC------------AGGTAACAGAACATTCCAAATCCCTCTGAATTCTGTACTCAACCAG
TCCGCGGGAAGTAGT--GTGTGCGCCGTGAATGTTTCAGGGTGCAGCTTCAGAGGGACGCCGCGCATCGAGCTGATGAAA
ACCGAGCTCAACCGCGACGGTGCAGACGGGTTATCGCGCTCGTCGGTCGGGCCCCAGGAGCTCTGGCCCGGCGTCTCCAA
CTACGTTCTGCAGGTGCTCTCGCACGAGAAGCAACAAGACCCTGCTCTGCTCATGTATTTCCTCGACTCGGGCGGTGGAT
CCTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCGGTAACCAGTCTCAGTCCCTCAATCCAGATGGCAGGTCA
AAAACTAACTTGCGACAATTCT----------TACTCAACAATTGAGCTGACATAGTGACATTGGCATGTTGATGTTGCA
--ATTTGGATAATCTTT--------TCTGCAGGATTCCTGAGCTGATTTTTTGGCACATACCAAGTACAGCATACGTCAA
GGTGGCACCAAAGTCTAAGACTGAGATCTGCAAGCCCTGCGTTGGTTCTCTCAACGAGGAGGATGTGGCGCCACAAGAAG
CCGAATGGGGCGTGATGGACGCTCTTGCCAAGAGGTCTTCAGTTAAAGTATAATACTACT---TTGTCTGAAACTCTGAT
GAACTACATGCCGGATCATATCTCTCAAAGTTGTGTAATGTGGTTACCTTTTGATGTGTAC----------------CTA
GGCGATCTTCGTGGGGCACAACCACGGGCTCGACTGGTGCTGCCCGTACGAGAAACTCTGGCTGTGTTTCGCGCGCCACA
CGGGTCACGGCGGATATGGTGACTGGCCAAGAGGG-GCAAGGATCGTTGAGATAGCCGAG------AAGCCGTTCTCTGT
CCACTCCTGGATACGGATGGAGAACGGGAGCACGCACAGCCATATTACATTG----------------------------
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>chr3A_997
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-------------------------------------------------------CCAGATGCGGTGGTGGCAGTACCGC
CTCGTGGCTGCAGTGGCCTTCGTCGCCGCCGCCCTGGCCACCGGCGCCGCGGTGCTGCGGCCACCGGCGCCGCTGCGGTT
CGGGCCGGGCGGCCGGTTCAAGGTGGCGCTGTTCGCGGACCTGCATTACGGCGAGAACGCCTGGACGGACTGGGGCCCCG
CGCAGGACGCCGCCTCCGACCGCGTCATGGCCACCGTGCTCGACGCCGAGAAGCCTGGTAATCAGTTGCCCT--------
--------------------------------------GAATCTTTCACTGAATTCCAGCTTTCCTCTGAATTTTTACCT
TCCAAATTACTCTTGTGCTGTATTATTG----GCAGACTTCGTGGTGTACCTCGGCGACCTCGTGACAGCCAACAACGTG
CCGATCCCCAACGCGACCCTGTACCGGGACAGGGCAATTTCTGCTTCCCGACGCAGGGGCCTCCCGTGGTCCACCGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCGGAGTGGTTCTCCCCCGCCGGCATCCCGCCCGTGCACTGCCCAC
CTGCCGCG------------TC------------AGGTAACCGAACATTCCAAATCGCTCTGAATTATGTACTCAACCAG
TCCGT---AAGTAGTGCGTGTGTGCCGTGAATGGTTCAGGGTGCAGCTTCAGAGGAACGCCGCGCATCGAGTTGATGACG
GCCGAGCTCAACCGCGACGGTGCCGACGGGTTATCGCGCTCGATGGTCGGCCCCCAGGAGCTCTGGCCTGGCATCTCCAA
CTACGTGCTACAGGTGCTCTCGCACGAGGAACGACAAGACCCTGCTCTGCTCATGTACTTCCTCGACTCAGGCGGTGGAT
CCTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCCACAGCCAGTCTCACTTCCTCAATCCAGATGGCAGGTCA
GAAGA-AACTTGCAGCAATTGAGATCAAGCTCTACTCAACAACTACTCA-----AGTGACATTGGCATGTTGATGTTGCA
--ATTTGTATAATCTTTTGCGATCATCTGCAGGATTCCTGAGATCATCTTCTGGCACATACCAAGCACATCATACGTCAA
GGTGGCTCCAAAGTCCAAGACTGAGATCTGCAAGCCCTGCGTTGGTTCCCTCAACGAGGAGGATGTGGCGCCACAAGAAG
CCGAATGGGGCATGATGGACGCTCTTGCCAAGAGGTCTTCAGTTAAGGTAGACTACTACT---TTGTCTGAAACTCTGAT
GAACTACA-GCCGGATCATCTCTC---AAGTTGTGTAATGTGGTTACCTTTTGATGTGTAC----------------GTA
GGCGATCTTCGTGGGGCACAACCACGGGCTCGACTGGTGCTGCCCGTACGAGAAACTGTGGCTGTGTTTCGCGCGGCACA
CGGGTCACGGCGGATATGGTGACTGGCCAAGAGGG-GCAAGGATCGTTGAGATAGCCGAG------AAGCCGTTCTCTGT
CCACTCCTGGATACGGATGGAGAACCGGAGCACGCACAGCCATATTACATTGTCTTGAGCTTG-ATTCGGATAGGATTCA
GAATCGTCTGCACCAT----GATGTGTTGAGTTCGGAAAGTCCA------------------------------------
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>chr3B_1347
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--------------------------------GCAGATTTCGTGGTGTACCTCGGCGACCTCGTGACAGCCAACAACGTG
CCGATCCCCAACGCCACCCTGTACTGGGACATGGCGATTTCTCATTCCCGGCGCAGGGGCATCCCGTGGTCCACCGTGTT
CGGCAACCACGACGACATGCCCTTCGAGTGGCCGCCTGAGTGGTTCTCCACGGCCGGCATCCCGCCGGTGCACTGCCCGC
CTGCGGCG------------TCCATGCCAACCTCAGGTAACCGAACATTCCAAATCCCGCTGAATTCTGTGTTCAACCAG
TCCGT---AAGTAGG--GTGTGTGCCGGGAATGGTTCAGAGTGCAGCTTCAGAGGGACGCCGCGGATCGACCTGATGACG
GCTGAAATGAACCGCGACGGTGCCGACGGGTTATCGCGCTCGTCGGTCGGCCCCCAGGAGCTCTGGCCCGGCATCTCCAA
CTACGTGCTGCGGGTGCTCTCGCATGAGAAGCAACCAGACCCTGCTCTGCTCATGTATTTCCTCGACTCCGGCGGTGGAT
CGTACCCGGAAGTCATATCCTCTGCACAGGTCCGGTGGTTCTGCTACCAGTCTCAGTCCCTCAATCCAGATGGCAGGTCA
AAAACTAACTTGCCACAATTCT----------TACTCAACAACTGAGCTGACATAGTGACATTTGCATGTTGATGTTGCA
CAATTTGGATCATC-TTTGCGAGCCTCTGCAGGATTCCAGAGATCATCTTCTGGCACATACCGAGCACAGCATACGTCAA
GGTGGCTCCAAAGGCCAAGACTGAGATAACAAAGCCCTGCGTTGGCTCCCTGAATGAGGAAGATGTGGCGCCACAGGTAG
CCGAATGGGGCATGATGGACGCTCTTGCCAAGAGATCTTCAGTTAAGGCATACTACTACTACTTTGTCTGAAACTCTCAT
GAACTGCATGCCGGATCATCTCTC---GAGTTGTGTAATGTGGTAACCTTTTGA-------------------------A
GGCGATCTTCGTGGGGCACAACCACGGGCTGGACTGGTGCTGCCCGTACGAGAAACTGTGGTTGTGTTTCGCGCGGCACA
CGGGTCACGGCGGATATGGTGACTGGCCAAGAGGG-GCAAGGATCGTTGAGATTGCCGAG------AAGCCTTTCTCTGT
CCGCTCCTGGATACGGATGGAGAACGGGAGCACGCACAGCCATATTACATTGTCTTGAGCTTTTATTCAGGTAGGATTCA
GACTTGTCTGCACCAT----GATGTGTTGAATTTGGAAAGTCCATTG--------CAATGCAAACAGT------------
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>chr2A_1741
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--------------------------------------ACCCTGCTCTGCTCATGTACTTCCTCGACTCAGGCGGCGGAT
CCTACCCGGAGGTCGTGTCCTGCGCACAGGTCACGTGGTTCCAGAGCCAGGCTCGGTTCCTCAATCCAGACGGT------
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------------------------------AGGATCCCTGAGCTGGTATTCTGGCACGTACCGAGCACGGCGTACGTCAA
GGTGGCTCCAAGGGCCACGGGCGAGATCAGGAAGCCCTGCGTCGGCAGCCTCAACGAGGCAGACGTGGCGCCACAGGTGG
CCGAATGGGGCATGATGGACGCTCTTGCACGGCGATCTTCAGTTAAGGTA--CCAGTGCTACTGTATCTG-AATTCTGAA
ACTCCGAATACTAGCACGTCTGA---------------------------TTGATGTGTGTATCT----TGTCTTGTGCA
GGCGATCTTCGTGGGGCACAACCACGGGCTGGACTGGTGCTGCCCCTACGAGAAACTGTGGCTGTGCTTCGCGCGGCACA
CGGGGCACGGAGGGTACGGTGACTGGCCAAGAGGGCGAGAGGATTGTTGATATCTCTGAAAAAACAAAGCATTTCTCTGT
CAACTCCTGGATCCGGATGGAGAATGGGTCCACGCACAGCCATGTTACCTTGAGCTCTGCTCGGTTTA--GTTAGGTTCA
GACTCATTTGCCCTAGCTAGGATGTGTTCAGTTTGGAAAGTCCATTG--------CACTGCAAACAGTTTACA---GATT
TAGTCAGGTATCTTCAAATTC----------------GCAACTATCCGGAACGCATGGTTTGAACGTGTTTATCATCCAA
CATGGACATAT--ATCGGTCCGACGACCGGTTCAAACGCGCATCTTTTCCCGCAAATTGGAAGTAAAGTGGGGGGAGGGT
TGTCGCGGGAGTCCGAACAACAATCACGTAGGACTCTGACACCCCC--GCCC-ACTCAAATCCCCTCCCAGTCTCATTCT
CTTTCACTCCGTCCCTATTCCCTCTTACTTTGCATCTGCACCCTTCTCCTGCT---CCGCTGCCATTGTACCTCTTCGTC
CGCCACCTAGGCGTTGTGGGACGTCAGC-AACCACCACCCACACGCTCGCTCACCTTGTGCT------------------
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>chr2B_1997
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----------CATCATGGACGCTCTTGCCCACAGGCCTTCAGTTAAGGTA--CTACCGCTACTGTATCTG-AATTCTGAA
ACTCTGAATACTAGCACGTCTGA---------------------------TTGATGTGTGTATCT----TGTAACGTGCA
GGCGATCTTCGTGGGGCACAACCACGGGCTGGACTGGTGCTGCCCCTACGAGAAACTCTGGCTGTGCTTCGCGCGGCACA
CGGGGCACGGAGGATACGGTGACTGGCCAAGAGGG-GCGAGGATCGTTGACATCTCTGAAAA---AAAGCATTTCTCTGT
CAACTCTTGGATCCGGATGGAGAATGGGTCAACGCACAGCCATGTTACCTTGAGCTCTGCTCGGTTTA--ATTAGGTTCA
GGCTCATTTGCCCTAGCTAGGATGTGTTCAGTTTGGAAAGTCCATTGTAGATTTGCAGTGCAAACAGTTTGTGTTCGATT
TAGTTAGGGCATCCCAAAACAGACCCTCAAATCGCCAGCATCCATC---------CGGTCCGGACGTGTTTACCATCCAA
CGCGGGCATATGTATCGGTCCACTGATCGGTTTGGATGCGCT--TTTTCCCCTAAACTAGAAGCAAAGTTGGG-------
--------GAGTTCGGACATCAGCTACGTAGGACTCTCACACCCCC--GCCCTACTCAAATCCCCTTCCGGTTTCATTCT
CTTCCATTTCGCCCCTACCCCCTCTTGCTTTGCATCTGCGTCCTCCTCCGCCGCCGCCGCCGCCGTTGTACCTCTCTAGC
CACCACCCAGCCATTGTCAGACGTCCGCAAACCACCACTCACGCGCCCACTCGCCTTGTGCTACAAC-------------
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>SNPs
-----------------------------------S--------------------------------------------
------------------------S-------------------------------------------------------
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-----------------------------------------------------S--------------------------
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------------------------S----------------------------S--------------------------
-----------------------------------------------------S--------------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------
-----------------------S------------------------------SSSSSSSSS----------S------
--------S--------------S-------------------------------------------S------------
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-----------------------------SS-------------SSS---------------------------------
--------------------------------S----------------------------------------------S
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-----------------------------------------------------------------------------S--
----------------SSS----------S--------------------------------------------------
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----------------------S---------------------------------------------------------
---------------------------------------------------------------SSSS--SSSSSS--S--
--------S---S--------SS---S---------S-S-----S---------------------------------S-
---------SSSS-S-S---S-S-------S-------------------------------------------------
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----------------------------SS-SSS----------------------------------------------
---------------------------------------------S----------------------------------
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------------------------------------S-------------------------------------------
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---------S----------------------------------------------------------------------
---------------------------------------------------SSS-S------------------------
-------S-------------S-------------------------------------------SSSS-----------
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---------------------------------------------------S----------------------------
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--------------------------------------------------------------------S-----------
--------------S-S-S-S--S---S----S-S-S------S-S---SS----------S------------S-----
--S------S-------S---S---S-----------SS--------------S--S----S-SSS--------------
-------S----------------------------S--S-S---SSS--------------------------------
---------S---------------------------------S-SS------------S--------------------
----------------S-----S--S---------------S--S--------------S-------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1939
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-------------------------------------------------------------------------------A
TCCACGCTTGACTCCAACA-------------------------------------------------------------
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>reverse_3814
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-----------------------------------------------------TAAATGGAGGGGTTCGCGAG-------
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