Multiple sequence alignment - TraesCS2D01G156600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G156600 chr2D 100.000 2588 0 0 1 2588 99738326 99735739 0.000000e+00 4780.0
1 TraesCS2D01G156600 chr2D 84.768 604 64 19 998 1588 99723360 99723948 4.800000e-162 580.0
2 TraesCS2D01G156600 chr2D 86.059 538 54 13 1069 1588 99683436 99683970 2.250000e-155 558.0
3 TraesCS2D01G156600 chr2D 83.855 607 70 19 1000 1586 99703624 99704222 1.050000e-153 553.0
4 TraesCS2D01G156600 chr2D 94.118 51 2 1 614 663 14895370 14895320 2.760000e-10 76.8
5 TraesCS2D01G156600 chr2D 87.931 58 7 0 615 672 13203729 13203672 4.620000e-08 69.4
6 TraesCS2D01G156600 chr2B 92.160 1250 52 21 669 1901 151628478 151627258 0.000000e+00 1724.0
7 TraesCS2D01G156600 chr2B 89.749 478 31 11 1 468 151643339 151642870 1.710000e-166 595.0
8 TraesCS2D01G156600 chr2B 82.276 536 64 18 1069 1588 150948514 150947994 3.960000e-118 435.0
9 TraesCS2D01G156600 chr2B 81.734 542 78 16 1062 1588 30636982 30636447 1.420000e-117 433.0
10 TraesCS2D01G156600 chr2B 87.500 368 41 3 1222 1588 150985236 150984873 1.110000e-113 420.0
11 TraesCS2D01G156600 chr2B 92.398 171 11 2 2374 2543 151623950 151623781 2.570000e-60 243.0
12 TraesCS2D01G156600 chr2B 89.691 194 7 1 2202 2382 151624328 151624135 4.310000e-58 235.0
13 TraesCS2D01G156600 chr2B 90.419 167 14 2 459 624 151628640 151628475 4.340000e-53 219.0
14 TraesCS2D01G156600 chr2B 83.246 191 22 8 1903 2086 363483013 363483200 1.590000e-37 167.0
15 TraesCS2D01G156600 chr2A 90.272 1285 49 31 665 1906 99160142 99158891 0.000000e+00 1611.0
16 TraesCS2D01G156600 chr2A 83.251 609 74 18 1000 1588 98903075 98903675 3.790000e-148 534.0
17 TraesCS2D01G156600 chr2A 82.979 611 72 17 1000 1588 98907972 98908572 8.210000e-145 523.0
18 TraesCS2D01G156600 chr2A 83.978 543 65 15 1062 1588 19913999 19914535 3.840000e-138 501.0
19 TraesCS2D01G156600 chr2A 81.973 527 75 7 1080 1590 19928857 19929379 1.840000e-116 429.0
20 TraesCS2D01G156600 chr2A 90.055 181 15 2 139 319 99160391 99160214 5.570000e-57 231.0
21 TraesCS2D01G156600 chr2A 88.514 148 12 3 1905 2052 238717792 238717934 9.520000e-40 174.0
22 TraesCS2D01G156600 chr2A 89.130 92 9 1 2498 2588 29266279 29266370 2.100000e-21 113.0
23 TraesCS2D01G156600 chr2A 97.872 47 1 0 2492 2538 757956402 757956356 5.940000e-12 82.4
24 TraesCS2D01G156600 chr4B 90.667 150 14 0 1903 2052 107660452 107660303 1.570000e-47 200.0
25 TraesCS2D01G156600 chr4B 90.667 150 12 1 1905 2052 24565086 24565235 5.650000e-47 198.0
26 TraesCS2D01G156600 chr4B 92.453 53 3 1 612 664 35179873 35179924 9.930000e-10 75.0
27 TraesCS2D01G156600 chr4A 90.541 148 13 1 1906 2052 674590304 674590157 7.310000e-46 195.0
28 TraesCS2D01G156600 chr4A 89.404 151 12 3 1903 2053 645108696 645108550 1.220000e-43 187.0
29 TraesCS2D01G156600 chr5B 89.474 152 12 2 1905 2052 550926363 550926514 3.400000e-44 189.0
30 TraesCS2D01G156600 chr5B 90.741 54 2 1 619 672 563681236 563681186 4.620000e-08 69.4
31 TraesCS2D01G156600 chr4D 93.966 116 7 0 1903 2018 460994486 460994371 2.650000e-40 176.0
32 TraesCS2D01G156600 chr1B 87.333 150 19 0 1903 2052 157274650 157274501 3.420000e-39 172.0
33 TraesCS2D01G156600 chr1B 92.079 101 8 0 1905 2005 567190780 567190880 2.680000e-30 143.0
34 TraesCS2D01G156600 chr1B 92.308 52 3 1 613 663 51628412 51628463 3.570000e-09 73.1
35 TraesCS2D01G156600 chr6B 93.204 103 6 1 1903 2005 96327878 96327777 1.600000e-32 150.0
36 TraesCS2D01G156600 chr6B 92.857 98 7 0 1908 2005 12760842 12760745 2.680000e-30 143.0
37 TraesCS2D01G156600 chr6B 92.857 98 7 0 1908 2005 52614607 52614510 2.680000e-30 143.0
38 TraesCS2D01G156600 chr7D 89.320 103 11 0 1903 2005 548267440 548267542 2.090000e-26 130.0
39 TraesCS2D01G156600 chr6D 94.340 53 3 0 612 664 215340793 215340845 5.940000e-12 82.4
40 TraesCS2D01G156600 chr5D 91.379 58 2 3 609 664 550554938 550554994 2.760000e-10 76.8
41 TraesCS2D01G156600 chr7A 87.692 65 5 3 605 667 632380422 632380359 3.570000e-09 73.1
42 TraesCS2D01G156600 chr3D 90.741 54 4 1 611 663 384726722 384726669 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G156600 chr2D 99735739 99738326 2587 True 4780.00 4780 100.0000 1 2588 1 chr2D.!!$R3 2587
1 TraesCS2D01G156600 chr2D 99723360 99723948 588 False 580.00 580 84.7680 998 1588 1 chr2D.!!$F3 590
2 TraesCS2D01G156600 chr2D 99683436 99683970 534 False 558.00 558 86.0590 1069 1588 1 chr2D.!!$F1 519
3 TraesCS2D01G156600 chr2D 99703624 99704222 598 False 553.00 553 83.8550 1000 1586 1 chr2D.!!$F2 586
4 TraesCS2D01G156600 chr2B 151623781 151628640 4859 True 605.25 1724 91.1670 459 2543 4 chr2B.!!$R5 2084
5 TraesCS2D01G156600 chr2B 150947994 150948514 520 True 435.00 435 82.2760 1069 1588 1 chr2B.!!$R2 519
6 TraesCS2D01G156600 chr2B 30636447 30636982 535 True 433.00 433 81.7340 1062 1588 1 chr2B.!!$R1 526
7 TraesCS2D01G156600 chr2A 99158891 99160391 1500 True 921.00 1611 90.1635 139 1906 2 chr2A.!!$R2 1767
8 TraesCS2D01G156600 chr2A 98903075 98903675 600 False 534.00 534 83.2510 1000 1588 1 chr2A.!!$F4 588
9 TraesCS2D01G156600 chr2A 98907972 98908572 600 False 523.00 523 82.9790 1000 1588 1 chr2A.!!$F5 588
10 TraesCS2D01G156600 chr2A 19913999 19914535 536 False 501.00 501 83.9780 1062 1588 1 chr2A.!!$F1 526
11 TraesCS2D01G156600 chr2A 19928857 19929379 522 False 429.00 429 81.9730 1080 1590 1 chr2A.!!$F2 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.101399 CAAGCGCATCTAGTCGGAGT 59.899 55.0 11.47 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2116 0.035598 TTGGCGCAGTGGTAAAGCTA 59.964 50.0 10.83 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.597742 CAATAATGCAGAGGTCGGGG 58.402 55.000 0.00 0.00 0.00 5.73
25 26 0.474184 AATAATGCAGAGGTCGGGGG 59.526 55.000 0.00 0.00 0.00 5.40
26 27 0.694444 ATAATGCAGAGGTCGGGGGT 60.694 55.000 0.00 0.00 0.00 4.95
27 28 0.912487 TAATGCAGAGGTCGGGGGTT 60.912 55.000 0.00 0.00 0.00 4.11
28 29 0.912487 AATGCAGAGGTCGGGGGTTA 60.912 55.000 0.00 0.00 0.00 2.85
29 30 0.912487 ATGCAGAGGTCGGGGGTTAA 60.912 55.000 0.00 0.00 0.00 2.01
30 31 1.078637 GCAGAGGTCGGGGGTTAAC 60.079 63.158 0.00 0.00 0.00 2.01
31 32 1.600638 CAGAGGTCGGGGGTTAACC 59.399 63.158 16.85 16.85 39.11 2.85
32 33 0.908180 CAGAGGTCGGGGGTTAACCT 60.908 60.000 23.69 1.72 46.03 3.50
33 34 4.142045 AGGTCGGGGGTTAACCTC 57.858 61.111 23.69 20.53 39.17 3.85
44 45 5.818678 GGGGTTAACCTCCTTTTCAATTT 57.181 39.130 23.69 0.00 40.03 1.82
45 46 6.182507 GGGGTTAACCTCCTTTTCAATTTT 57.817 37.500 23.69 0.00 40.03 1.82
46 47 6.597562 GGGGTTAACCTCCTTTTCAATTTTT 58.402 36.000 23.69 0.00 40.03 1.94
75 76 3.756933 ATATCAATGCATTGTTGGGGC 57.243 42.857 32.67 0.00 38.84 5.80
76 77 1.575419 ATCAATGCATTGTTGGGGCT 58.425 45.000 32.67 11.80 38.84 5.19
77 78 2.228545 TCAATGCATTGTTGGGGCTA 57.771 45.000 32.67 13.21 38.84 3.93
78 79 2.749600 TCAATGCATTGTTGGGGCTAT 58.250 42.857 32.67 0.00 38.84 2.97
79 80 3.106054 TCAATGCATTGTTGGGGCTATT 58.894 40.909 32.67 0.00 38.84 1.73
80 81 3.518705 TCAATGCATTGTTGGGGCTATTT 59.481 39.130 32.67 0.00 38.84 1.40
81 82 3.547054 ATGCATTGTTGGGGCTATTTG 57.453 42.857 0.00 0.00 0.00 2.32
82 83 1.066286 TGCATTGTTGGGGCTATTTGC 60.066 47.619 0.00 0.00 41.94 3.68
83 84 1.207811 GCATTGTTGGGGCTATTTGCT 59.792 47.619 0.00 0.00 42.39 3.91
84 85 2.355007 GCATTGTTGGGGCTATTTGCTT 60.355 45.455 0.00 0.00 42.39 3.91
85 86 3.524541 CATTGTTGGGGCTATTTGCTTC 58.475 45.455 0.00 0.00 42.39 3.86
86 87 2.300956 TGTTGGGGCTATTTGCTTCA 57.699 45.000 0.00 0.00 42.39 3.02
87 88 1.892474 TGTTGGGGCTATTTGCTTCAC 59.108 47.619 0.00 0.00 42.39 3.18
88 89 2.171003 GTTGGGGCTATTTGCTTCACT 58.829 47.619 0.00 0.00 42.39 3.41
89 90 1.838112 TGGGGCTATTTGCTTCACTG 58.162 50.000 0.00 0.00 42.39 3.66
90 91 1.075374 TGGGGCTATTTGCTTCACTGT 59.925 47.619 0.00 0.00 42.39 3.55
91 92 1.745653 GGGGCTATTTGCTTCACTGTC 59.254 52.381 0.00 0.00 42.39 3.51
92 93 2.436417 GGGCTATTTGCTTCACTGTCA 58.564 47.619 0.00 0.00 42.39 3.58
93 94 2.819608 GGGCTATTTGCTTCACTGTCAA 59.180 45.455 0.00 0.00 42.39 3.18
94 95 3.366374 GGGCTATTTGCTTCACTGTCAAC 60.366 47.826 0.00 0.00 42.39 3.18
95 96 3.253188 GGCTATTTGCTTCACTGTCAACA 59.747 43.478 0.00 0.00 42.39 3.33
96 97 4.222114 GCTATTTGCTTCACTGTCAACAC 58.778 43.478 0.00 0.00 38.95 3.32
97 98 4.023707 GCTATTTGCTTCACTGTCAACACT 60.024 41.667 0.00 0.00 38.95 3.55
98 99 4.989279 ATTTGCTTCACTGTCAACACTT 57.011 36.364 0.00 0.00 0.00 3.16
99 100 3.763097 TTGCTTCACTGTCAACACTTG 57.237 42.857 0.00 0.00 0.00 3.16
100 101 1.401552 TGCTTCACTGTCAACACTTGC 59.598 47.619 0.00 0.00 0.00 4.01
101 102 1.268743 GCTTCACTGTCAACACTTGCC 60.269 52.381 0.00 0.00 0.00 4.52
102 103 2.292267 CTTCACTGTCAACACTTGCCT 58.708 47.619 0.00 0.00 0.00 4.75
103 104 2.418368 TCACTGTCAACACTTGCCTT 57.582 45.000 0.00 0.00 0.00 4.35
104 105 2.722094 TCACTGTCAACACTTGCCTTT 58.278 42.857 0.00 0.00 0.00 3.11
105 106 2.682856 TCACTGTCAACACTTGCCTTTC 59.317 45.455 0.00 0.00 0.00 2.62
106 107 2.684881 CACTGTCAACACTTGCCTTTCT 59.315 45.455 0.00 0.00 0.00 2.52
107 108 3.876914 CACTGTCAACACTTGCCTTTCTA 59.123 43.478 0.00 0.00 0.00 2.10
108 109 4.335315 CACTGTCAACACTTGCCTTTCTAA 59.665 41.667 0.00 0.00 0.00 2.10
109 110 4.947388 ACTGTCAACACTTGCCTTTCTAAA 59.053 37.500 0.00 0.00 0.00 1.85
110 111 5.066505 ACTGTCAACACTTGCCTTTCTAAAG 59.933 40.000 0.00 0.00 35.79 1.85
111 112 4.202010 TGTCAACACTTGCCTTTCTAAAGC 60.202 41.667 0.00 0.00 34.69 3.51
112 113 4.036852 GTCAACACTTGCCTTTCTAAAGCT 59.963 41.667 0.00 0.00 34.69 3.74
113 114 4.036734 TCAACACTTGCCTTTCTAAAGCTG 59.963 41.667 0.00 0.00 34.69 4.24
114 115 2.887152 ACACTTGCCTTTCTAAAGCTGG 59.113 45.455 0.00 0.00 34.69 4.85
115 116 2.229784 CACTTGCCTTTCTAAAGCTGGG 59.770 50.000 0.00 0.00 34.69 4.45
116 117 1.821136 CTTGCCTTTCTAAAGCTGGGG 59.179 52.381 0.00 0.00 34.69 4.96
117 118 0.611896 TGCCTTTCTAAAGCTGGGGC 60.612 55.000 0.00 0.00 38.67 5.80
118 119 0.611896 GCCTTTCTAAAGCTGGGGCA 60.612 55.000 0.00 0.00 41.70 5.36
119 120 1.923356 CCTTTCTAAAGCTGGGGCAA 58.077 50.000 0.00 0.00 41.70 4.52
120 121 1.821136 CCTTTCTAAAGCTGGGGCAAG 59.179 52.381 0.00 0.00 41.70 4.01
121 122 2.519013 CTTTCTAAAGCTGGGGCAAGT 58.481 47.619 0.00 0.00 41.70 3.16
122 123 3.561313 CCTTTCTAAAGCTGGGGCAAGTA 60.561 47.826 0.00 0.00 41.70 2.24
123 124 4.273318 CTTTCTAAAGCTGGGGCAAGTAT 58.727 43.478 0.00 0.00 41.70 2.12
124 125 4.316025 TTCTAAAGCTGGGGCAAGTATT 57.684 40.909 0.00 0.00 41.70 1.89
125 126 4.316025 TCTAAAGCTGGGGCAAGTATTT 57.684 40.909 0.00 0.00 41.70 1.40
126 127 4.672899 TCTAAAGCTGGGGCAAGTATTTT 58.327 39.130 0.00 0.00 41.70 1.82
127 128 5.083821 TCTAAAGCTGGGGCAAGTATTTTT 58.916 37.500 0.00 0.00 41.70 1.94
128 129 6.249951 TCTAAAGCTGGGGCAAGTATTTTTA 58.750 36.000 0.00 0.00 41.70 1.52
129 130 6.895204 TCTAAAGCTGGGGCAAGTATTTTTAT 59.105 34.615 0.00 0.00 41.70 1.40
130 131 6.373005 AAAGCTGGGGCAAGTATTTTTATT 57.627 33.333 0.00 0.00 41.70 1.40
131 132 5.598416 AGCTGGGGCAAGTATTTTTATTC 57.402 39.130 0.00 0.00 41.70 1.75
132 133 5.272402 AGCTGGGGCAAGTATTTTTATTCT 58.728 37.500 0.00 0.00 41.70 2.40
133 134 5.721480 AGCTGGGGCAAGTATTTTTATTCTT 59.279 36.000 0.00 0.00 41.70 2.52
134 135 6.042777 GCTGGGGCAAGTATTTTTATTCTTC 58.957 40.000 0.00 0.00 38.54 2.87
135 136 6.127338 GCTGGGGCAAGTATTTTTATTCTTCT 60.127 38.462 0.00 0.00 38.54 2.85
136 137 7.068226 GCTGGGGCAAGTATTTTTATTCTTCTA 59.932 37.037 0.00 0.00 38.54 2.10
137 138 8.887264 TGGGGCAAGTATTTTTATTCTTCTAA 57.113 30.769 0.00 0.00 0.00 2.10
172 173 0.730840 GCCAGTATGTACGGCCAAAC 59.269 55.000 2.24 0.00 38.80 2.93
177 178 2.039348 AGTATGTACGGCCAAACCAACT 59.961 45.455 2.24 3.43 39.03 3.16
178 179 1.989706 ATGTACGGCCAAACCAACTT 58.010 45.000 2.24 0.00 39.03 2.66
181 182 2.104451 TGTACGGCCAAACCAACTTAGA 59.896 45.455 2.24 0.00 39.03 2.10
186 187 3.005367 CGGCCAAACCAACTTAGACAAAT 59.995 43.478 2.24 0.00 39.03 2.32
189 190 6.571537 CGGCCAAACCAACTTAGACAAATATT 60.572 38.462 2.24 0.00 39.03 1.28
279 280 7.391148 AAGAGTAGTGTTGTTGTTTTGTGAT 57.609 32.000 0.00 0.00 0.00 3.06
280 281 8.500753 AAGAGTAGTGTTGTTGTTTTGTGATA 57.499 30.769 0.00 0.00 0.00 2.15
281 282 8.677148 AGAGTAGTGTTGTTGTTTTGTGATAT 57.323 30.769 0.00 0.00 0.00 1.63
290 291 5.628606 TGTTGTTTTGTGATATCATGTTGCG 59.371 36.000 9.02 0.00 0.00 4.85
294 295 6.073003 TGTTTTGTGATATCATGTTGCGTACA 60.073 34.615 9.02 3.59 41.97 2.90
304 305 3.361794 TGTTGCGTACAAAATGTGCAT 57.638 38.095 0.00 0.00 37.58 3.96
319 320 3.715495 TGTGCATTTTGGTGACATGTTC 58.285 40.909 0.00 0.00 42.32 3.18
320 321 3.131755 TGTGCATTTTGGTGACATGTTCA 59.868 39.130 0.00 0.00 42.32 3.18
321 322 4.118410 GTGCATTTTGGTGACATGTTCAA 58.882 39.130 0.00 2.99 42.32 2.69
322 323 4.209703 GTGCATTTTGGTGACATGTTCAAG 59.790 41.667 0.00 0.00 42.32 3.02
323 324 3.184986 GCATTTTGGTGACATGTTCAAGC 59.815 43.478 0.00 0.00 42.32 4.01
325 326 0.310543 TTGGTGACATGTTCAAGCGC 59.689 50.000 0.00 0.00 42.32 5.92
326 327 0.817229 TGGTGACATGTTCAAGCGCA 60.817 50.000 11.47 0.00 35.39 6.09
327 328 0.523072 GGTGACATGTTCAAGCGCAT 59.477 50.000 11.47 0.00 35.39 4.73
328 329 1.466360 GGTGACATGTTCAAGCGCATC 60.466 52.381 11.47 0.00 35.39 3.91
329 330 1.466167 GTGACATGTTCAAGCGCATCT 59.534 47.619 11.47 0.00 35.39 2.90
330 331 2.672874 GTGACATGTTCAAGCGCATCTA 59.327 45.455 11.47 0.00 35.39 1.98
331 332 2.931969 TGACATGTTCAAGCGCATCTAG 59.068 45.455 11.47 0.00 0.00 2.43
332 333 2.932614 GACATGTTCAAGCGCATCTAGT 59.067 45.455 11.47 0.00 0.00 2.57
334 335 1.629013 TGTTCAAGCGCATCTAGTCG 58.371 50.000 11.47 0.00 0.00 4.18
335 336 0.924090 GTTCAAGCGCATCTAGTCGG 59.076 55.000 11.47 0.00 0.00 4.79
336 337 0.815095 TTCAAGCGCATCTAGTCGGA 59.185 50.000 11.47 0.00 0.00 4.55
337 338 0.382158 TCAAGCGCATCTAGTCGGAG 59.618 55.000 11.47 0.00 0.00 4.63
338 339 0.101399 CAAGCGCATCTAGTCGGAGT 59.899 55.000 11.47 0.00 0.00 3.85
339 340 0.818296 AAGCGCATCTAGTCGGAGTT 59.182 50.000 11.47 0.00 0.00 3.01
341 342 0.179134 GCGCATCTAGTCGGAGTTGT 60.179 55.000 0.30 0.00 0.00 3.32
342 343 1.736032 GCGCATCTAGTCGGAGTTGTT 60.736 52.381 0.30 0.00 0.00 2.83
343 344 2.186076 CGCATCTAGTCGGAGTTGTTC 58.814 52.381 0.00 0.00 0.00 3.18
344 345 2.415491 CGCATCTAGTCGGAGTTGTTCA 60.415 50.000 0.00 0.00 0.00 3.18
348 349 5.446473 GCATCTAGTCGGAGTTGTTCATTTG 60.446 44.000 0.00 0.00 0.00 2.32
350 351 2.504367 AGTCGGAGTTGTTCATTTGGG 58.496 47.619 0.00 0.00 0.00 4.12
353 354 0.243636 GGAGTTGTTCATTTGGGGCG 59.756 55.000 0.00 0.00 0.00 6.13
354 355 0.243636 GAGTTGTTCATTTGGGGCGG 59.756 55.000 0.00 0.00 0.00 6.13
355 356 1.184970 AGTTGTTCATTTGGGGCGGG 61.185 55.000 0.00 0.00 0.00 6.13
357 358 1.182385 TTGTTCATTTGGGGCGGGAC 61.182 55.000 0.00 0.00 0.00 4.46
371 372 1.446366 GGGACGTAAGAGGGATGGC 59.554 63.158 0.00 0.00 43.62 4.40
372 373 1.049289 GGGACGTAAGAGGGATGGCT 61.049 60.000 0.00 0.00 43.62 4.75
373 374 1.700955 GGACGTAAGAGGGATGGCTA 58.299 55.000 0.00 0.00 43.62 3.93
374 375 1.614413 GGACGTAAGAGGGATGGCTAG 59.386 57.143 0.00 0.00 43.62 3.42
375 376 1.614413 GACGTAAGAGGGATGGCTAGG 59.386 57.143 0.00 0.00 43.62 3.02
376 377 0.969894 CGTAAGAGGGATGGCTAGGG 59.030 60.000 0.00 0.00 43.02 3.53
377 378 0.687920 GTAAGAGGGATGGCTAGGGC 59.312 60.000 0.00 0.00 37.82 5.19
378 379 0.832135 TAAGAGGGATGGCTAGGGCG 60.832 60.000 0.00 0.00 39.81 6.13
379 380 2.524394 GAGGGATGGCTAGGGCGA 60.524 66.667 0.00 0.00 39.81 5.54
380 381 2.844839 AGGGATGGCTAGGGCGAC 60.845 66.667 0.00 0.00 39.81 5.19
381 382 4.301027 GGGATGGCTAGGGCGACG 62.301 72.222 0.00 0.00 39.81 5.12
382 383 4.301027 GGATGGCTAGGGCGACGG 62.301 72.222 0.00 0.00 39.81 4.79
383 384 4.971125 GATGGCTAGGGCGACGGC 62.971 72.222 13.84 13.84 39.81 5.68
385 386 4.826404 TGGCTAGGGCGACGGCTA 62.826 66.667 21.48 10.34 39.81 3.93
386 387 3.979739 GGCTAGGGCGACGGCTAG 61.980 72.222 21.48 19.05 39.81 3.42
387 388 4.649310 GCTAGGGCGACGGCTAGC 62.649 72.222 25.13 25.13 39.81 3.42
388 389 3.217017 CTAGGGCGACGGCTAGCA 61.217 66.667 21.48 3.27 39.81 3.49
389 390 3.486252 CTAGGGCGACGGCTAGCAC 62.486 68.421 21.48 5.06 39.81 4.40
398 399 2.203070 GGCTAGCACCGTGATGGG 60.203 66.667 18.24 0.00 44.64 4.00
399 400 2.731571 GGCTAGCACCGTGATGGGA 61.732 63.158 18.24 0.00 44.64 4.37
400 401 1.227380 GCTAGCACCGTGATGGGAG 60.227 63.158 10.63 0.00 44.64 4.30
401 402 1.443407 CTAGCACCGTGATGGGAGG 59.557 63.158 1.65 0.00 44.64 4.30
402 403 1.001120 TAGCACCGTGATGGGAGGA 59.999 57.895 1.65 0.00 44.64 3.71
403 404 1.043116 TAGCACCGTGATGGGAGGAG 61.043 60.000 1.65 0.00 44.64 3.69
404 405 2.903357 CACCGTGATGGGAGGAGG 59.097 66.667 0.00 0.00 44.64 4.30
405 406 1.990060 CACCGTGATGGGAGGAGGT 60.990 63.158 0.00 0.00 44.64 3.85
406 407 1.686110 ACCGTGATGGGAGGAGGTC 60.686 63.158 0.00 0.00 44.64 3.85
407 408 2.435693 CCGTGATGGGAGGAGGTCC 61.436 68.421 0.00 0.00 46.10 4.46
414 415 4.697102 GGAGGAGGTCCAGGAGAG 57.303 66.667 0.00 0.00 46.10 3.20
415 416 1.075600 GGAGGAGGTCCAGGAGAGG 60.076 68.421 0.00 0.00 46.10 3.69
416 417 1.760480 GAGGAGGTCCAGGAGAGGC 60.760 68.421 0.00 0.00 38.89 4.70
417 418 2.236959 GAGGAGGTCCAGGAGAGGCT 62.237 65.000 0.00 0.00 38.89 4.58
418 419 2.063378 GGAGGTCCAGGAGAGGCTG 61.063 68.421 0.00 0.00 35.64 4.85
419 420 2.040278 AGGTCCAGGAGAGGCTGG 59.960 66.667 0.00 0.00 41.85 4.85
420 421 3.086600 GGTCCAGGAGAGGCTGGG 61.087 72.222 0.00 0.00 40.91 4.45
421 422 3.086600 GTCCAGGAGAGGCTGGGG 61.087 72.222 0.00 0.00 40.91 4.96
422 423 3.615811 TCCAGGAGAGGCTGGGGT 61.616 66.667 0.00 0.00 40.91 4.95
423 424 3.406200 CCAGGAGAGGCTGGGGTG 61.406 72.222 0.00 0.00 37.10 4.61
424 425 3.406200 CAGGAGAGGCTGGGGTGG 61.406 72.222 0.00 0.00 0.00 4.61
427 428 3.650950 GAGAGGCTGGGGTGGCAA 61.651 66.667 0.00 0.00 34.73 4.52
428 429 3.635268 GAGAGGCTGGGGTGGCAAG 62.635 68.421 0.00 0.00 34.73 4.01
429 430 4.748144 GAGGCTGGGGTGGCAAGG 62.748 72.222 0.00 0.00 34.73 3.61
463 464 0.822164 GGCTAGAGAGGCGGTTACAA 59.178 55.000 0.00 0.00 38.67 2.41
476 477 1.472201 GGTTACAACTAGGTAGGCCGC 60.472 57.143 0.00 0.00 40.50 6.53
479 480 3.152400 AACTAGGTAGGCCGCGGG 61.152 66.667 29.38 9.99 40.50 6.13
501 502 4.420168 GAGAGGACGAAGAAGATGAACAG 58.580 47.826 0.00 0.00 0.00 3.16
509 510 1.648467 GAAGATGAACAGGTGGCGGC 61.648 60.000 0.00 0.00 0.00 6.53
541 543 3.454447 ACCGTTGGATATTGACCTGATGA 59.546 43.478 0.00 0.00 0.00 2.92
543 545 3.809832 CGTTGGATATTGACCTGATGACC 59.190 47.826 0.00 0.00 0.00 4.02
545 547 5.380043 GTTGGATATTGACCTGATGACCAT 58.620 41.667 0.00 0.00 0.00 3.55
561 563 5.018539 TGACCATAAATAGAAGTGACCGG 57.981 43.478 0.00 0.00 0.00 5.28
569 571 2.496899 AGAAGTGACCGGCATGAATT 57.503 45.000 0.00 0.00 0.00 2.17
618 620 2.622942 GCTCCCATGTCAGTGACAAAAA 59.377 45.455 28.70 13.90 45.96 1.94
619 621 3.256631 GCTCCCATGTCAGTGACAAAAAT 59.743 43.478 28.70 10.62 45.96 1.82
620 622 4.458989 GCTCCCATGTCAGTGACAAAAATA 59.541 41.667 28.70 12.94 45.96 1.40
621 623 5.392380 GCTCCCATGTCAGTGACAAAAATAG 60.392 44.000 28.70 20.98 45.96 1.73
622 624 5.630121 TCCCATGTCAGTGACAAAAATAGT 58.370 37.500 28.70 8.72 45.96 2.12
623 625 6.774673 TCCCATGTCAGTGACAAAAATAGTA 58.225 36.000 28.70 3.29 45.96 1.82
624 626 7.402054 TCCCATGTCAGTGACAAAAATAGTAT 58.598 34.615 28.70 7.21 45.96 2.12
625 627 7.888021 TCCCATGTCAGTGACAAAAATAGTATT 59.112 33.333 28.70 6.46 45.96 1.89
626 628 8.184192 CCCATGTCAGTGACAAAAATAGTATTC 58.816 37.037 28.70 0.00 45.96 1.75
627 629 8.184192 CCATGTCAGTGACAAAAATAGTATTCC 58.816 37.037 28.70 0.00 45.96 3.01
628 630 8.729756 CATGTCAGTGACAAAAATAGTATTCCA 58.270 33.333 28.70 0.71 45.96 3.53
629 631 8.862325 TGTCAGTGACAAAAATAGTATTCCAT 57.138 30.769 23.55 0.00 39.78 3.41
630 632 8.946085 TGTCAGTGACAAAAATAGTATTCCATC 58.054 33.333 23.55 0.00 39.78 3.51
631 633 8.398665 GTCAGTGACAAAAATAGTATTCCATCC 58.601 37.037 18.54 0.00 32.09 3.51
632 634 7.279981 TCAGTGACAAAAATAGTATTCCATCCG 59.720 37.037 0.00 0.00 0.00 4.18
633 635 7.065803 CAGTGACAAAAATAGTATTCCATCCGT 59.934 37.037 0.00 0.00 0.00 4.69
634 636 7.280205 AGTGACAAAAATAGTATTCCATCCGTC 59.720 37.037 0.00 0.00 0.00 4.79
635 637 6.540914 TGACAAAAATAGTATTCCATCCGTCC 59.459 38.462 0.00 0.00 0.00 4.79
636 638 5.826208 ACAAAAATAGTATTCCATCCGTCCC 59.174 40.000 0.00 0.00 0.00 4.46
637 639 5.640158 AAAATAGTATTCCATCCGTCCCA 57.360 39.130 0.00 0.00 0.00 4.37
638 640 5.843019 AAATAGTATTCCATCCGTCCCAT 57.157 39.130 0.00 0.00 0.00 4.00
639 641 6.945636 AAATAGTATTCCATCCGTCCCATA 57.054 37.500 0.00 0.00 0.00 2.74
640 642 6.945636 AATAGTATTCCATCCGTCCCATAA 57.054 37.500 0.00 0.00 0.00 1.90
641 643 7.510675 AATAGTATTCCATCCGTCCCATAAT 57.489 36.000 0.00 0.00 0.00 1.28
642 644 8.618240 AATAGTATTCCATCCGTCCCATAATA 57.382 34.615 0.00 0.00 0.00 0.98
643 645 8.798975 ATAGTATTCCATCCGTCCCATAATAT 57.201 34.615 0.00 0.00 0.00 1.28
644 646 9.892444 ATAGTATTCCATCCGTCCCATAATATA 57.108 33.333 0.00 0.00 0.00 0.86
645 647 8.618240 AGTATTCCATCCGTCCCATAATATAA 57.382 34.615 0.00 0.00 0.00 0.98
646 648 8.705594 AGTATTCCATCCGTCCCATAATATAAG 58.294 37.037 0.00 0.00 0.00 1.73
647 649 7.749377 ATTCCATCCGTCCCATAATATAAGA 57.251 36.000 0.00 0.00 0.00 2.10
648 650 6.791867 TCCATCCGTCCCATAATATAAGAG 57.208 41.667 0.00 0.00 0.00 2.85
649 651 5.128827 TCCATCCGTCCCATAATATAAGAGC 59.871 44.000 0.00 0.00 0.00 4.09
650 652 5.104941 CCATCCGTCCCATAATATAAGAGCA 60.105 44.000 0.00 0.00 0.00 4.26
651 653 6.408548 CCATCCGTCCCATAATATAAGAGCAT 60.409 42.308 0.00 0.00 0.00 3.79
652 654 6.620877 TCCGTCCCATAATATAAGAGCATT 57.379 37.500 0.00 0.00 0.00 3.56
653 655 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
654 656 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
655 657 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
715 734 0.170339 GCTGAAATGGTACCAACGCC 59.830 55.000 20.76 9.17 0.00 5.68
763 782 0.813610 TGGTGCTGGAACAACGACAG 60.814 55.000 0.00 0.00 38.70 3.51
765 784 0.304705 GTGCTGGAACAACGACAGTG 59.695 55.000 0.00 0.00 38.70 3.66
823 842 6.456449 CGTTACTTTTCACTCCGATTTATGGG 60.456 42.308 0.00 0.00 0.00 4.00
914 936 1.982226 TGCCCCACGCCACTATATATT 59.018 47.619 0.00 0.00 36.24 1.28
955 989 2.013483 CTTCGATCAGCTAGCCGCG 61.013 63.158 12.13 10.27 45.59 6.46
956 990 4.630785 TCGATCAGCTAGCCGCGC 62.631 66.667 12.13 0.00 45.59 6.86
988 1040 0.389948 AAGAGTTGCACCGGTCGATC 60.390 55.000 2.59 0.00 0.00 3.69
989 1041 1.080093 GAGTTGCACCGGTCGATCA 60.080 57.895 2.59 0.00 0.00 2.92
990 1042 1.352156 GAGTTGCACCGGTCGATCAC 61.352 60.000 2.59 0.00 0.00 3.06
991 1043 1.666553 GTTGCACCGGTCGATCACA 60.667 57.895 2.59 0.00 0.00 3.58
992 1044 1.069935 TTGCACCGGTCGATCACAA 59.930 52.632 2.59 0.00 0.00 3.33
993 1045 0.533085 TTGCACCGGTCGATCACAAA 60.533 50.000 2.59 0.00 0.00 2.83
994 1046 0.321210 TGCACCGGTCGATCACAAAT 60.321 50.000 2.59 0.00 0.00 2.32
995 1047 0.802494 GCACCGGTCGATCACAAATT 59.198 50.000 2.59 0.00 0.00 1.82
996 1048 1.202031 GCACCGGTCGATCACAAATTC 60.202 52.381 2.59 0.00 0.00 2.17
1015 1067 4.842091 CAATGCAAGGCCTCGCGC 62.842 66.667 11.93 12.81 0.00 6.86
1029 1090 2.040544 CGCGCCATCTTCAAGGGTT 61.041 57.895 0.00 0.00 0.00 4.11
1164 1234 2.494918 GACATCCTCCACGACGGG 59.505 66.667 0.00 0.00 34.36 5.28
1591 1676 1.139947 GAGTGCTACGTCTGAGGCC 59.860 63.158 0.00 0.00 0.00 5.19
1593 1678 2.037367 TGCTACGTCTGAGGCCCT 59.963 61.111 0.00 0.00 0.00 5.19
1685 1770 2.693267 GGAACTGCCGATTAGGACTT 57.307 50.000 0.00 0.00 45.00 3.01
1686 1771 3.814005 GGAACTGCCGATTAGGACTTA 57.186 47.619 0.00 0.00 45.00 2.24
1847 1940 8.865001 TGTGTTATAAAAACTCACTTTGCAAAC 58.135 29.630 8.05 0.00 0.00 2.93
1891 1986 2.567169 TGTAGAAGCACACACCAGCTAT 59.433 45.455 0.00 0.00 40.90 2.97
1906 2001 2.094026 CAGCTATTTCACCCAAAAGCCC 60.094 50.000 0.00 0.00 32.68 5.19
1907 2002 1.135112 GCTATTTCACCCAAAAGCCCG 60.135 52.381 0.00 0.00 0.00 6.13
1908 2003 1.476488 CTATTTCACCCAAAAGCCCGG 59.524 52.381 0.00 0.00 0.00 5.73
1909 2004 0.471022 ATTTCACCCAAAAGCCCGGT 60.471 50.000 0.00 0.00 0.00 5.28
1910 2005 1.395826 TTTCACCCAAAAGCCCGGTG 61.396 55.000 0.00 0.00 46.99 4.94
1911 2006 3.989787 CACCCAAAAGCCCGGTGC 61.990 66.667 0.00 3.33 40.59 5.01
1912 2007 4.531426 ACCCAAAAGCCCGGTGCA 62.531 61.111 15.92 0.00 44.83 4.57
1913 2008 2.996734 CCCAAAAGCCCGGTGCAT 60.997 61.111 15.92 2.51 44.83 3.96
1914 2009 2.262292 CCAAAAGCCCGGTGCATG 59.738 61.111 15.92 11.31 44.83 4.06
1915 2010 2.573083 CCAAAAGCCCGGTGCATGT 61.573 57.895 15.92 0.00 44.83 3.21
1916 2011 1.247419 CCAAAAGCCCGGTGCATGTA 61.247 55.000 15.92 0.00 44.83 2.29
1917 2012 0.171007 CAAAAGCCCGGTGCATGTAG 59.829 55.000 15.92 0.00 44.83 2.74
1918 2013 1.595093 AAAAGCCCGGTGCATGTAGC 61.595 55.000 15.92 2.56 44.83 3.58
1919 2014 2.484287 AAAGCCCGGTGCATGTAGCT 62.484 55.000 15.92 4.82 45.94 3.32
1920 2015 2.876368 AAGCCCGGTGCATGTAGCTC 62.876 60.000 15.92 0.78 45.94 4.09
1926 2021 3.558674 GTGCATGTAGCTCCCACTT 57.441 52.632 0.00 0.00 45.94 3.16
1927 2022 1.089920 GTGCATGTAGCTCCCACTTG 58.910 55.000 0.00 0.00 45.94 3.16
1928 2023 0.677731 TGCATGTAGCTCCCACTTGC 60.678 55.000 15.52 15.52 45.94 4.01
1929 2024 1.709147 GCATGTAGCTCCCACTTGCG 61.709 60.000 9.44 0.00 41.15 4.85
1930 2025 1.450312 ATGTAGCTCCCACTTGCGC 60.450 57.895 0.00 0.00 0.00 6.09
1931 2026 2.047274 GTAGCTCCCACTTGCGCA 60.047 61.111 5.66 5.66 0.00 6.09
1932 2027 2.103042 GTAGCTCCCACTTGCGCAG 61.103 63.158 11.31 7.81 0.00 5.18
1933 2028 3.315142 TAGCTCCCACTTGCGCAGG 62.315 63.158 19.01 19.01 0.00 4.85
1935 2030 4.335647 CTCCCACTTGCGCAGGGT 62.336 66.667 27.15 19.65 43.31 4.34
1936 2031 4.329545 TCCCACTTGCGCAGGGTC 62.330 66.667 27.15 0.00 43.31 4.46
1944 2039 4.821589 GCGCAGGGTCCGGAGAAG 62.822 72.222 3.06 0.00 0.00 2.85
1945 2040 4.148825 CGCAGGGTCCGGAGAAGG 62.149 72.222 3.06 0.00 0.00 3.46
1946 2041 3.787001 GCAGGGTCCGGAGAAGGG 61.787 72.222 3.06 0.00 0.00 3.95
1947 2042 2.284699 CAGGGTCCGGAGAAGGGT 60.285 66.667 3.06 0.00 0.00 4.34
1948 2043 2.039137 AGGGTCCGGAGAAGGGTC 59.961 66.667 3.06 0.00 0.00 4.46
1949 2044 3.082055 GGGTCCGGAGAAGGGTCC 61.082 72.222 3.06 0.00 0.00 4.46
1955 2050 2.979649 GGAGAAGGGTCCGACCAC 59.020 66.667 19.43 8.70 41.02 4.16
1956 2051 1.609794 GGAGAAGGGTCCGACCACT 60.610 63.158 19.43 14.01 41.02 4.00
1957 2052 1.192803 GGAGAAGGGTCCGACCACTT 61.193 60.000 19.43 17.88 41.02 3.16
1958 2053 0.685660 GAGAAGGGTCCGACCACTTT 59.314 55.000 19.43 9.96 41.02 2.66
1959 2054 0.396811 AGAAGGGTCCGACCACTTTG 59.603 55.000 19.43 0.00 41.02 2.77
1960 2055 1.228154 AAGGGTCCGACCACTTTGC 60.228 57.895 19.43 0.60 41.02 3.68
1961 2056 3.047877 GGGTCCGACCACTTTGCG 61.048 66.667 19.43 0.00 41.02 4.85
1962 2057 2.280592 GGTCCGACCACTTTGCGT 60.281 61.111 13.05 0.00 38.42 5.24
1963 2058 2.315386 GGTCCGACCACTTTGCGTC 61.315 63.158 13.05 0.00 38.42 5.19
1964 2059 1.300697 GTCCGACCACTTTGCGTCT 60.301 57.895 0.00 0.00 0.00 4.18
1965 2060 0.038892 GTCCGACCACTTTGCGTCTA 60.039 55.000 0.00 0.00 0.00 2.59
1966 2061 0.892755 TCCGACCACTTTGCGTCTAT 59.107 50.000 0.00 0.00 0.00 1.98
1967 2062 2.093890 TCCGACCACTTTGCGTCTATA 58.906 47.619 0.00 0.00 0.00 1.31
1968 2063 2.098607 TCCGACCACTTTGCGTCTATAG 59.901 50.000 0.00 0.00 0.00 1.31
1969 2064 2.159282 CCGACCACTTTGCGTCTATAGT 60.159 50.000 0.00 0.00 0.00 2.12
1970 2065 3.065786 CCGACCACTTTGCGTCTATAGTA 59.934 47.826 0.00 0.00 0.00 1.82
1971 2066 4.033684 CGACCACTTTGCGTCTATAGTAC 58.966 47.826 0.00 0.00 0.00 2.73
1972 2067 4.025015 ACCACTTTGCGTCTATAGTACG 57.975 45.455 15.84 15.84 43.12 3.67
1980 2075 2.918616 CGTCTATAGTACGCAGCCTTC 58.081 52.381 10.39 0.00 33.04 3.46
1981 2076 2.350580 CGTCTATAGTACGCAGCCTTCC 60.351 54.545 10.39 0.00 33.04 3.46
1982 2077 2.030096 GTCTATAGTACGCAGCCTTCCC 60.030 54.545 0.00 0.00 0.00 3.97
1983 2078 1.272769 CTATAGTACGCAGCCTTCCCC 59.727 57.143 0.00 0.00 0.00 4.81
1984 2079 0.398664 ATAGTACGCAGCCTTCCCCT 60.399 55.000 0.00 0.00 0.00 4.79
1985 2080 0.259647 TAGTACGCAGCCTTCCCCTA 59.740 55.000 0.00 0.00 0.00 3.53
1986 2081 1.143401 GTACGCAGCCTTCCCCTAC 59.857 63.158 0.00 0.00 0.00 3.18
1987 2082 1.305465 TACGCAGCCTTCCCCTACA 60.305 57.895 0.00 0.00 0.00 2.74
1988 2083 0.689745 TACGCAGCCTTCCCCTACAT 60.690 55.000 0.00 0.00 0.00 2.29
1989 2084 1.224592 CGCAGCCTTCCCCTACATT 59.775 57.895 0.00 0.00 0.00 2.71
1990 2085 0.394352 CGCAGCCTTCCCCTACATTT 60.394 55.000 0.00 0.00 0.00 2.32
1991 2086 1.393603 GCAGCCTTCCCCTACATTTC 58.606 55.000 0.00 0.00 0.00 2.17
1992 2087 1.064389 GCAGCCTTCCCCTACATTTCT 60.064 52.381 0.00 0.00 0.00 2.52
1993 2088 2.648059 CAGCCTTCCCCTACATTTCTG 58.352 52.381 0.00 0.00 0.00 3.02
1994 2089 2.025887 CAGCCTTCCCCTACATTTCTGT 60.026 50.000 0.00 0.00 39.49 3.41
1995 2090 3.199946 CAGCCTTCCCCTACATTTCTGTA 59.800 47.826 0.00 0.00 36.79 2.74
1996 2091 3.850173 AGCCTTCCCCTACATTTCTGTAA 59.150 43.478 0.00 0.00 37.41 2.41
1997 2092 4.080299 AGCCTTCCCCTACATTTCTGTAAG 60.080 45.833 0.00 0.00 37.41 2.34
1998 2093 4.080526 GCCTTCCCCTACATTTCTGTAAGA 60.081 45.833 0.00 0.00 44.68 2.10
2013 2108 6.320494 TCTGTAAGAGACTGTCTTCAAGAC 57.680 41.667 10.92 10.92 42.26 3.01
2014 2109 6.065374 TCTGTAAGAGACTGTCTTCAAGACT 58.935 40.000 18.49 0.00 42.26 3.24
2015 2110 6.547880 TCTGTAAGAGACTGTCTTCAAGACTT 59.452 38.462 18.49 11.32 42.26 3.01
2016 2111 6.507900 TGTAAGAGACTGTCTTCAAGACTTG 58.492 40.000 18.49 13.07 42.26 3.16
2017 2112 5.860941 AAGAGACTGTCTTCAAGACTTGA 57.139 39.130 18.49 13.99 42.26 3.02
2018 2113 5.195001 AGAGACTGTCTTCAAGACTTGAC 57.805 43.478 17.52 11.15 45.27 3.18
2019 2114 4.646945 AGAGACTGTCTTCAAGACTTGACA 59.353 41.667 17.52 11.91 45.27 3.58
2020 2115 5.127845 AGAGACTGTCTTCAAGACTTGACAA 59.872 40.000 17.52 6.04 45.27 3.18
2021 2116 5.923204 AGACTGTCTTCAAGACTTGACAAT 58.077 37.500 17.52 3.36 45.27 2.71
2022 2117 7.014711 AGAGACTGTCTTCAAGACTTGACAATA 59.985 37.037 17.52 6.37 45.27 1.90
2023 2118 7.151308 AGACTGTCTTCAAGACTTGACAATAG 58.849 38.462 17.52 16.31 45.27 1.73
2024 2119 5.698545 ACTGTCTTCAAGACTTGACAATAGC 59.301 40.000 17.52 9.00 45.27 2.97
2025 2120 5.858381 TGTCTTCAAGACTTGACAATAGCT 58.142 37.500 17.52 0.00 45.27 3.32
2026 2121 6.291377 TGTCTTCAAGACTTGACAATAGCTT 58.709 36.000 17.52 0.00 45.27 3.74
2027 2122 6.767902 TGTCTTCAAGACTTGACAATAGCTTT 59.232 34.615 17.52 0.00 45.27 3.51
2028 2123 7.931407 TGTCTTCAAGACTTGACAATAGCTTTA 59.069 33.333 17.52 0.00 45.27 1.85
2029 2124 8.224437 GTCTTCAAGACTTGACAATAGCTTTAC 58.776 37.037 17.52 3.54 41.88 2.01
2030 2125 7.387948 TCTTCAAGACTTGACAATAGCTTTACC 59.612 37.037 17.52 0.00 39.87 2.85
2031 2126 6.530120 TCAAGACTTGACAATAGCTTTACCA 58.470 36.000 13.99 0.00 34.08 3.25
2032 2127 6.426937 TCAAGACTTGACAATAGCTTTACCAC 59.573 38.462 13.99 0.00 34.08 4.16
2033 2128 6.115448 AGACTTGACAATAGCTTTACCACT 57.885 37.500 0.00 0.00 0.00 4.00
2034 2129 5.934625 AGACTTGACAATAGCTTTACCACTG 59.065 40.000 0.00 0.00 0.00 3.66
2035 2130 4.455877 ACTTGACAATAGCTTTACCACTGC 59.544 41.667 0.00 0.00 0.00 4.40
2036 2131 3.000041 TGACAATAGCTTTACCACTGCG 59.000 45.455 0.00 0.00 0.00 5.18
2037 2132 1.737793 ACAATAGCTTTACCACTGCGC 59.262 47.619 0.00 0.00 0.00 6.09
2038 2133 1.064060 CAATAGCTTTACCACTGCGCC 59.936 52.381 4.18 0.00 0.00 6.53
2039 2134 0.251916 ATAGCTTTACCACTGCGCCA 59.748 50.000 4.18 0.00 0.00 5.69
2040 2135 0.035598 TAGCTTTACCACTGCGCCAA 59.964 50.000 4.18 0.00 0.00 4.52
2041 2136 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2042 2137 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2043 2138 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2044 2139 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2045 2140 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2057 2152 3.552628 AGGCTCCCCTTCCCTAGT 58.447 61.111 0.00 0.00 38.74 2.57
2058 2153 1.798171 AGGCTCCCCTTCCCTAGTT 59.202 57.895 0.00 0.00 38.74 2.24
2059 2154 0.326713 AGGCTCCCCTTCCCTAGTTC 60.327 60.000 0.00 0.00 38.74 3.01
2060 2155 0.620700 GGCTCCCCTTCCCTAGTTCA 60.621 60.000 0.00 0.00 0.00 3.18
2061 2156 1.512735 GCTCCCCTTCCCTAGTTCAT 58.487 55.000 0.00 0.00 0.00 2.57
2062 2157 1.418264 GCTCCCCTTCCCTAGTTCATC 59.582 57.143 0.00 0.00 0.00 2.92
2063 2158 2.050918 CTCCCCTTCCCTAGTTCATCC 58.949 57.143 0.00 0.00 0.00 3.51
2064 2159 1.368203 TCCCCTTCCCTAGTTCATCCA 59.632 52.381 0.00 0.00 0.00 3.41
2065 2160 2.205342 CCCCTTCCCTAGTTCATCCAA 58.795 52.381 0.00 0.00 0.00 3.53
2066 2161 2.580783 CCCCTTCCCTAGTTCATCCAAA 59.419 50.000 0.00 0.00 0.00 3.28
2067 2162 3.011257 CCCCTTCCCTAGTTCATCCAAAA 59.989 47.826 0.00 0.00 0.00 2.44
2068 2163 4.273318 CCCTTCCCTAGTTCATCCAAAAG 58.727 47.826 0.00 0.00 0.00 2.27
2069 2164 3.696548 CCTTCCCTAGTTCATCCAAAAGC 59.303 47.826 0.00 0.00 0.00 3.51
2070 2165 4.335416 CTTCCCTAGTTCATCCAAAAGCA 58.665 43.478 0.00 0.00 0.00 3.91
2071 2166 4.380843 TCCCTAGTTCATCCAAAAGCAA 57.619 40.909 0.00 0.00 0.00 3.91
2072 2167 4.735369 TCCCTAGTTCATCCAAAAGCAAA 58.265 39.130 0.00 0.00 0.00 3.68
2073 2168 5.144100 TCCCTAGTTCATCCAAAAGCAAAA 58.856 37.500 0.00 0.00 0.00 2.44
2074 2169 5.600484 TCCCTAGTTCATCCAAAAGCAAAAA 59.400 36.000 0.00 0.00 0.00 1.94
2124 2219 2.007608 GATAACACGCCTTCCACCTTC 58.992 52.381 0.00 0.00 0.00 3.46
2125 2220 0.320073 TAACACGCCTTCCACCTTCG 60.320 55.000 0.00 0.00 0.00 3.79
2126 2221 2.742372 CACGCCTTCCACCTTCGG 60.742 66.667 0.00 0.00 0.00 4.30
2127 2222 3.239253 ACGCCTTCCACCTTCGGT 61.239 61.111 0.00 0.00 35.62 4.69
2128 2223 1.909781 ACGCCTTCCACCTTCGGTA 60.910 57.895 0.00 0.00 32.11 4.02
2129 2224 1.447314 CGCCTTCCACCTTCGGTAC 60.447 63.158 0.00 0.00 32.11 3.34
2162 2257 7.040132 TGCATGTACCAATCAATTTCAACACTA 60.040 33.333 0.00 0.00 0.00 2.74
2163 2258 7.975616 GCATGTACCAATCAATTTCAACACTAT 59.024 33.333 0.00 0.00 0.00 2.12
2189 2284 5.272283 TCAAGTTTAGACTCTTTCGGTGT 57.728 39.130 0.00 0.00 34.21 4.16
2193 2288 7.437267 TCAAGTTTAGACTCTTTCGGTGTTTAG 59.563 37.037 0.00 0.00 34.21 1.85
2222 4966 6.931838 AGATCAACAATGCTCATGTCAAAAT 58.068 32.000 0.00 0.00 0.00 1.82
2232 4976 5.801444 TGCTCATGTCAAAATTTTCTATGCG 59.199 36.000 0.00 3.00 0.00 4.73
2237 4981 4.162812 GTCAAAATTTTCTATGCGCCGAA 58.837 39.130 4.18 1.90 0.00 4.30
2261 5005 1.515304 GAGCAGCTCGTCGAGGTTC 60.515 63.158 23.60 19.10 38.40 3.62
2340 5097 2.246789 CGAGTCTCGAGCTTTCTGTTC 58.753 52.381 17.52 0.00 43.74 3.18
2351 5108 6.932400 TCGAGCTTTCTGTTCACCTTTATAAA 59.068 34.615 0.00 0.00 0.00 1.40
2360 5117 4.413495 TCACCTTTATAAAGCGTGCAAC 57.587 40.909 26.08 0.00 37.24 4.17
2390 5147 9.426837 GTTATGGTTTTGATTTTTAGGGTTACC 57.573 33.333 0.00 0.00 0.00 2.85
2391 5148 6.422344 TGGTTTTGATTTTTAGGGTTACCC 57.578 37.500 13.56 13.56 45.90 3.69
2434 5384 2.096496 CCAACATGATGAAGCGAGGTTC 59.904 50.000 4.25 7.97 0.00 3.62
2472 5422 0.811281 GAAGGGAGGTTTTGCCGATG 59.189 55.000 0.00 0.00 43.23 3.84
2475 5425 1.025041 GGGAGGTTTTGCCGATGATC 58.975 55.000 0.00 0.00 43.70 2.92
2487 5437 2.141517 CCGATGATCCAAGAGCATGAC 58.858 52.381 0.00 0.00 38.85 3.06
2494 5444 1.021390 CCAAGAGCATGACGGGACAC 61.021 60.000 0.00 0.00 0.00 3.67
2495 5445 0.320683 CAAGAGCATGACGGGACACA 60.321 55.000 0.00 0.00 0.00 3.72
2504 5454 4.024893 GCATGACGGGACACAATACTAATG 60.025 45.833 0.00 0.00 0.00 1.90
2507 5457 2.504175 ACGGGACACAATACTAATGCCT 59.496 45.455 0.00 0.00 0.00 4.75
2543 5493 1.571460 CTAATCGAGCGGCCATTGC 59.429 57.895 2.24 0.00 0.00 3.56
2554 5504 3.820595 GCCATTGCCTTTTGACTCC 57.179 52.632 0.00 0.00 0.00 3.85
2555 5505 0.247460 GCCATTGCCTTTTGACTCCC 59.753 55.000 0.00 0.00 0.00 4.30
2556 5506 1.631405 CCATTGCCTTTTGACTCCCA 58.369 50.000 0.00 0.00 0.00 4.37
2557 5507 2.181975 CCATTGCCTTTTGACTCCCAT 58.818 47.619 0.00 0.00 0.00 4.00
2558 5508 2.093869 CCATTGCCTTTTGACTCCCATG 60.094 50.000 0.00 0.00 0.00 3.66
2559 5509 0.968405 TTGCCTTTTGACTCCCATGC 59.032 50.000 0.00 0.00 0.00 4.06
2560 5510 0.178967 TGCCTTTTGACTCCCATGCA 60.179 50.000 0.00 0.00 0.00 3.96
2561 5511 1.188863 GCCTTTTGACTCCCATGCAT 58.811 50.000 0.00 0.00 0.00 3.96
2562 5512 2.291475 TGCCTTTTGACTCCCATGCATA 60.291 45.455 0.00 0.00 0.00 3.14
2563 5513 2.961062 GCCTTTTGACTCCCATGCATAT 59.039 45.455 0.00 0.00 0.00 1.78
2564 5514 3.243636 GCCTTTTGACTCCCATGCATATG 60.244 47.826 0.00 0.00 0.00 1.78
2565 5515 3.243636 CCTTTTGACTCCCATGCATATGC 60.244 47.826 21.09 21.09 42.50 3.14
2566 5516 1.985473 TTGACTCCCATGCATATGCC 58.015 50.000 24.54 7.26 41.18 4.40
2567 5517 0.845337 TGACTCCCATGCATATGCCA 59.155 50.000 24.54 13.08 41.18 4.92
2568 5518 1.242076 GACTCCCATGCATATGCCAC 58.758 55.000 24.54 0.00 41.18 5.01
2569 5519 0.535780 ACTCCCATGCATATGCCACG 60.536 55.000 24.54 12.46 41.18 4.94
2570 5520 1.228215 TCCCATGCATATGCCACGG 60.228 57.895 24.54 19.91 41.18 4.94
2571 5521 1.228215 CCCATGCATATGCCACGGA 60.228 57.895 24.54 6.17 41.18 4.69
2572 5522 0.609957 CCCATGCATATGCCACGGAT 60.610 55.000 24.54 8.39 41.18 4.18
2573 5523 1.250328 CCATGCATATGCCACGGATT 58.750 50.000 24.54 0.00 41.18 3.01
2574 5524 2.435422 CCATGCATATGCCACGGATTA 58.565 47.619 24.54 3.84 41.18 1.75
2575 5525 2.819019 CCATGCATATGCCACGGATTAA 59.181 45.455 24.54 3.07 41.18 1.40
2576 5526 3.366273 CCATGCATATGCCACGGATTAAC 60.366 47.826 24.54 0.00 41.18 2.01
2577 5527 2.924421 TGCATATGCCACGGATTAACA 58.076 42.857 24.54 0.00 41.18 2.41
2578 5528 3.282885 TGCATATGCCACGGATTAACAA 58.717 40.909 24.54 0.00 41.18 2.83
2579 5529 3.314913 TGCATATGCCACGGATTAACAAG 59.685 43.478 24.54 0.00 41.18 3.16
2580 5530 3.304659 GCATATGCCACGGATTAACAAGG 60.305 47.826 17.26 0.00 34.31 3.61
2581 5531 2.507407 ATGCCACGGATTAACAAGGT 57.493 45.000 0.00 0.00 0.00 3.50
2582 5532 1.816074 TGCCACGGATTAACAAGGTC 58.184 50.000 0.00 0.00 0.00 3.85
2583 5533 0.725117 GCCACGGATTAACAAGGTCG 59.275 55.000 0.00 0.00 0.00 4.79
2584 5534 1.942586 GCCACGGATTAACAAGGTCGT 60.943 52.381 0.00 0.00 0.00 4.34
2585 5535 1.730064 CCACGGATTAACAAGGTCGTG 59.270 52.381 0.00 0.00 44.82 4.35
2586 5536 1.127951 CACGGATTAACAAGGTCGTGC 59.872 52.381 0.00 0.00 40.71 5.34
2587 5537 1.270412 ACGGATTAACAAGGTCGTGCA 60.270 47.619 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.597742 CCCCGACCTCTGCATTATTG 58.402 55.000 0.00 0.00 0.00 1.90
6 7 0.474184 CCCCCGACCTCTGCATTATT 59.526 55.000 0.00 0.00 0.00 1.40
7 8 0.694444 ACCCCCGACCTCTGCATTAT 60.694 55.000 0.00 0.00 0.00 1.28
8 9 0.912487 AACCCCCGACCTCTGCATTA 60.912 55.000 0.00 0.00 0.00 1.90
9 10 0.912487 TAACCCCCGACCTCTGCATT 60.912 55.000 0.00 0.00 0.00 3.56
10 11 0.912487 TTAACCCCCGACCTCTGCAT 60.912 55.000 0.00 0.00 0.00 3.96
11 12 1.536907 TTAACCCCCGACCTCTGCA 60.537 57.895 0.00 0.00 0.00 4.41
12 13 1.078637 GTTAACCCCCGACCTCTGC 60.079 63.158 0.00 0.00 0.00 4.26
13 14 0.908180 AGGTTAACCCCCGACCTCTG 60.908 60.000 21.30 0.00 39.55 3.35
14 15 1.472921 AGGTTAACCCCCGACCTCT 59.527 57.895 21.30 0.00 39.55 3.69
15 16 4.142045 AGGTTAACCCCCGACCTC 57.858 61.111 21.30 0.00 39.55 3.85
16 17 1.614525 GGAGGTTAACCCCCGACCT 60.615 63.158 21.30 0.00 46.11 3.85
17 18 1.203441 AAGGAGGTTAACCCCCGACC 61.203 60.000 21.30 15.55 36.42 4.79
18 19 0.694771 AAAGGAGGTTAACCCCCGAC 59.305 55.000 21.30 7.21 36.42 4.79
19 20 1.352017 GAAAAGGAGGTTAACCCCCGA 59.648 52.381 21.30 0.00 36.42 5.14
20 21 1.074244 TGAAAAGGAGGTTAACCCCCG 59.926 52.381 21.30 0.00 36.42 5.73
21 22 2.984435 TGAAAAGGAGGTTAACCCCC 57.016 50.000 21.30 19.28 36.42 5.40
22 23 5.818678 AAATTGAAAAGGAGGTTAACCCC 57.181 39.130 21.30 20.12 36.42 4.95
51 52 5.357596 GCCCCAACAATGCATTGATATTTTT 59.642 36.000 38.99 22.10 40.14 1.94
52 53 4.883006 GCCCCAACAATGCATTGATATTTT 59.117 37.500 38.99 22.75 40.14 1.82
53 54 4.164604 AGCCCCAACAATGCATTGATATTT 59.835 37.500 38.99 23.09 40.14 1.40
54 55 3.712733 AGCCCCAACAATGCATTGATATT 59.287 39.130 38.99 23.42 40.14 1.28
55 56 3.311091 AGCCCCAACAATGCATTGATAT 58.689 40.909 38.99 23.73 40.14 1.63
56 57 2.749600 AGCCCCAACAATGCATTGATA 58.250 42.857 38.99 0.00 40.14 2.15
57 58 1.575419 AGCCCCAACAATGCATTGAT 58.425 45.000 38.99 28.19 40.14 2.57
58 59 2.228545 TAGCCCCAACAATGCATTGA 57.771 45.000 38.99 16.40 40.14 2.57
59 60 3.547054 AATAGCCCCAACAATGCATTG 57.453 42.857 32.74 32.74 43.26 2.82
60 61 3.876341 CAAATAGCCCCAACAATGCATT 58.124 40.909 5.99 5.99 0.00 3.56
61 62 2.420408 GCAAATAGCCCCAACAATGCAT 60.420 45.455 0.00 0.00 37.23 3.96
62 63 1.066286 GCAAATAGCCCCAACAATGCA 60.066 47.619 0.00 0.00 37.23 3.96
63 64 1.655484 GCAAATAGCCCCAACAATGC 58.345 50.000 0.00 0.00 37.23 3.56
74 75 4.023707 AGTGTTGACAGTGAAGCAAATAGC 60.024 41.667 0.00 0.00 46.19 2.97
75 76 5.679734 AGTGTTGACAGTGAAGCAAATAG 57.320 39.130 0.00 0.00 0.00 1.73
76 77 5.733091 GCAAGTGTTGACAGTGAAGCAAATA 60.733 40.000 0.00 0.00 0.00 1.40
77 78 4.675510 CAAGTGTTGACAGTGAAGCAAAT 58.324 39.130 0.00 0.00 0.00 2.32
78 79 3.673052 GCAAGTGTTGACAGTGAAGCAAA 60.673 43.478 0.00 0.00 0.00 3.68
79 80 2.159393 GCAAGTGTTGACAGTGAAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
80 81 1.401552 GCAAGTGTTGACAGTGAAGCA 59.598 47.619 0.00 0.00 0.00 3.91
81 82 1.268743 GGCAAGTGTTGACAGTGAAGC 60.269 52.381 0.00 0.00 38.99 3.86
82 83 2.292267 AGGCAAGTGTTGACAGTGAAG 58.708 47.619 0.00 0.00 42.71 3.02
83 84 2.418368 AGGCAAGTGTTGACAGTGAA 57.582 45.000 0.00 0.00 42.71 3.18
84 85 2.418368 AAGGCAAGTGTTGACAGTGA 57.582 45.000 0.00 0.00 42.71 3.41
85 86 2.684881 AGAAAGGCAAGTGTTGACAGTG 59.315 45.455 0.00 0.00 42.71 3.66
86 87 3.004752 AGAAAGGCAAGTGTTGACAGT 57.995 42.857 0.00 0.00 42.71 3.55
87 88 5.499139 TTTAGAAAGGCAAGTGTTGACAG 57.501 39.130 0.00 0.00 42.71 3.51
88 89 4.202010 GCTTTAGAAAGGCAAGTGTTGACA 60.202 41.667 4.27 0.00 42.71 3.58
89 90 4.036852 AGCTTTAGAAAGGCAAGTGTTGAC 59.963 41.667 4.27 0.00 39.66 3.18
90 91 4.036734 CAGCTTTAGAAAGGCAAGTGTTGA 59.963 41.667 4.27 0.00 36.53 3.18
91 92 4.293415 CAGCTTTAGAAAGGCAAGTGTTG 58.707 43.478 4.27 0.00 36.53 3.33
92 93 3.319122 CCAGCTTTAGAAAGGCAAGTGTT 59.681 43.478 4.27 0.00 36.53 3.32
93 94 2.887152 CCAGCTTTAGAAAGGCAAGTGT 59.113 45.455 4.27 0.00 36.53 3.55
94 95 2.229784 CCCAGCTTTAGAAAGGCAAGTG 59.770 50.000 4.27 0.00 36.53 3.16
95 96 2.519013 CCCAGCTTTAGAAAGGCAAGT 58.481 47.619 4.27 0.00 36.53 3.16
96 97 1.821136 CCCCAGCTTTAGAAAGGCAAG 59.179 52.381 4.27 0.00 36.53 4.01
97 98 1.923356 CCCCAGCTTTAGAAAGGCAA 58.077 50.000 4.27 0.00 36.53 4.52
98 99 0.611896 GCCCCAGCTTTAGAAAGGCA 60.612 55.000 4.27 0.00 36.53 4.75
99 100 0.611896 TGCCCCAGCTTTAGAAAGGC 60.612 55.000 4.27 0.00 40.80 4.35
100 101 1.821136 CTTGCCCCAGCTTTAGAAAGG 59.179 52.381 4.27 0.00 40.80 3.11
101 102 2.519013 ACTTGCCCCAGCTTTAGAAAG 58.481 47.619 0.00 0.00 40.80 2.62
102 103 2.675658 ACTTGCCCCAGCTTTAGAAA 57.324 45.000 0.00 0.00 40.80 2.52
103 104 4.316025 AATACTTGCCCCAGCTTTAGAA 57.684 40.909 0.00 0.00 40.80 2.10
104 105 4.316025 AAATACTTGCCCCAGCTTTAGA 57.684 40.909 0.00 0.00 40.80 2.10
105 106 5.405935 AAAAATACTTGCCCCAGCTTTAG 57.594 39.130 0.00 0.00 40.80 1.85
106 107 7.398904 AGAATAAAAATACTTGCCCCAGCTTTA 59.601 33.333 0.00 0.00 40.80 1.85
107 108 6.213397 AGAATAAAAATACTTGCCCCAGCTTT 59.787 34.615 0.00 0.00 40.80 3.51
108 109 5.721480 AGAATAAAAATACTTGCCCCAGCTT 59.279 36.000 0.00 0.00 40.80 3.74
109 110 5.272402 AGAATAAAAATACTTGCCCCAGCT 58.728 37.500 0.00 0.00 40.80 4.24
110 111 5.598416 AGAATAAAAATACTTGCCCCAGC 57.402 39.130 0.00 0.00 40.48 4.85
111 112 7.410120 AGAAGAATAAAAATACTTGCCCCAG 57.590 36.000 0.00 0.00 0.00 4.45
112 113 8.887264 TTAGAAGAATAAAAATACTTGCCCCA 57.113 30.769 0.00 0.00 0.00 4.96
113 114 9.803315 CTTTAGAAGAATAAAAATACTTGCCCC 57.197 33.333 0.00 0.00 0.00 5.80
114 115 9.302345 GCTTTAGAAGAATAAAAATACTTGCCC 57.698 33.333 0.00 0.00 0.00 5.36
120 121 9.290483 GCACCAGCTTTAGAAGAATAAAAATAC 57.710 33.333 0.00 0.00 37.91 1.89
121 122 9.019656 TGCACCAGCTTTAGAAGAATAAAAATA 57.980 29.630 0.00 0.00 42.74 1.40
122 123 7.895759 TGCACCAGCTTTAGAAGAATAAAAAT 58.104 30.769 0.00 0.00 42.74 1.82
123 124 7.283625 TGCACCAGCTTTAGAAGAATAAAAA 57.716 32.000 0.00 0.00 42.74 1.94
124 125 6.892658 TGCACCAGCTTTAGAAGAATAAAA 57.107 33.333 0.00 0.00 42.74 1.52
125 126 6.490040 ACTTGCACCAGCTTTAGAAGAATAAA 59.510 34.615 0.00 0.00 42.74 1.40
126 127 6.003950 ACTTGCACCAGCTTTAGAAGAATAA 58.996 36.000 0.00 0.00 42.74 1.40
127 128 5.560724 ACTTGCACCAGCTTTAGAAGAATA 58.439 37.500 0.00 0.00 42.74 1.75
128 129 4.401925 ACTTGCACCAGCTTTAGAAGAAT 58.598 39.130 0.00 0.00 42.74 2.40
129 130 3.820557 ACTTGCACCAGCTTTAGAAGAA 58.179 40.909 0.00 0.00 42.74 2.52
130 131 3.492102 ACTTGCACCAGCTTTAGAAGA 57.508 42.857 0.00 0.00 42.74 2.87
131 132 5.227238 CATACTTGCACCAGCTTTAGAAG 57.773 43.478 0.00 0.00 42.74 2.85
172 173 5.105797 TGCCAGCAATATTTGTCTAAGTTGG 60.106 40.000 0.00 0.00 0.00 3.77
177 178 4.202141 GGCATGCCAGCAATATTTGTCTAA 60.202 41.667 32.08 0.00 35.83 2.10
178 179 3.318839 GGCATGCCAGCAATATTTGTCTA 59.681 43.478 32.08 0.00 35.83 2.59
181 182 1.832366 TGGCATGCCAGCAATATTTGT 59.168 42.857 35.59 0.00 41.89 2.83
247 248 9.614792 AAACAACAACACTACTCTTTCTAAGAT 57.385 29.630 0.00 0.00 36.82 2.40
254 255 7.209471 TCACAAAACAACAACACTACTCTTT 57.791 32.000 0.00 0.00 0.00 2.52
269 270 5.369685 ACGCAACATGATATCACAAAACA 57.630 34.783 7.78 0.00 0.00 2.83
279 280 5.092105 GCACATTTTGTACGCAACATGATA 58.908 37.500 0.00 0.00 42.36 2.15
280 281 3.919804 GCACATTTTGTACGCAACATGAT 59.080 39.130 0.00 0.00 42.36 2.45
281 282 3.243201 TGCACATTTTGTACGCAACATGA 60.243 39.130 0.00 0.00 42.36 3.07
304 305 2.797792 GCGCTTGAACATGTCACCAAAA 60.798 45.455 0.00 0.00 35.39 2.44
310 311 1.812235 AGATGCGCTTGAACATGTCA 58.188 45.000 9.73 0.00 0.00 3.58
319 320 0.101399 ACTCCGACTAGATGCGCTTG 59.899 55.000 9.73 0.00 0.00 4.01
320 321 0.818296 AACTCCGACTAGATGCGCTT 59.182 50.000 9.73 0.55 0.00 4.68
321 322 0.101399 CAACTCCGACTAGATGCGCT 59.899 55.000 9.73 0.00 0.00 5.92
322 323 0.179134 ACAACTCCGACTAGATGCGC 60.179 55.000 0.00 0.00 0.00 6.09
323 324 2.186076 GAACAACTCCGACTAGATGCG 58.814 52.381 0.00 0.00 0.00 4.73
325 326 5.063944 CCAAATGAACAACTCCGACTAGATG 59.936 44.000 0.00 0.00 0.00 2.90
326 327 5.178797 CCAAATGAACAACTCCGACTAGAT 58.821 41.667 0.00 0.00 0.00 1.98
327 328 4.562757 CCCAAATGAACAACTCCGACTAGA 60.563 45.833 0.00 0.00 0.00 2.43
328 329 3.684788 CCCAAATGAACAACTCCGACTAG 59.315 47.826 0.00 0.00 0.00 2.57
329 330 3.558321 CCCCAAATGAACAACTCCGACTA 60.558 47.826 0.00 0.00 0.00 2.59
330 331 2.504367 CCCAAATGAACAACTCCGACT 58.496 47.619 0.00 0.00 0.00 4.18
331 332 1.539827 CCCCAAATGAACAACTCCGAC 59.460 52.381 0.00 0.00 0.00 4.79
332 333 1.904287 CCCCAAATGAACAACTCCGA 58.096 50.000 0.00 0.00 0.00 4.55
334 335 0.243636 CGCCCCAAATGAACAACTCC 59.756 55.000 0.00 0.00 0.00 3.85
335 336 0.243636 CCGCCCCAAATGAACAACTC 59.756 55.000 0.00 0.00 0.00 3.01
336 337 1.184970 CCCGCCCCAAATGAACAACT 61.185 55.000 0.00 0.00 0.00 3.16
337 338 1.182385 TCCCGCCCCAAATGAACAAC 61.182 55.000 0.00 0.00 0.00 3.32
338 339 1.153989 TCCCGCCCCAAATGAACAA 59.846 52.632 0.00 0.00 0.00 2.83
339 340 1.605165 GTCCCGCCCCAAATGAACA 60.605 57.895 0.00 0.00 0.00 3.18
341 342 1.839148 TACGTCCCGCCCCAAATGAA 61.839 55.000 0.00 0.00 0.00 2.57
342 343 1.839148 TTACGTCCCGCCCCAAATGA 61.839 55.000 0.00 0.00 0.00 2.57
343 344 1.373590 CTTACGTCCCGCCCCAAATG 61.374 60.000 0.00 0.00 0.00 2.32
344 345 1.078001 CTTACGTCCCGCCCCAAAT 60.078 57.895 0.00 0.00 0.00 2.32
348 349 3.846430 CCTCTTACGTCCCGCCCC 61.846 72.222 0.00 0.00 0.00 5.80
350 351 2.132352 ATCCCTCTTACGTCCCGCC 61.132 63.158 0.00 0.00 0.00 6.13
353 354 1.049289 AGCCATCCCTCTTACGTCCC 61.049 60.000 0.00 0.00 0.00 4.46
354 355 1.614413 CTAGCCATCCCTCTTACGTCC 59.386 57.143 0.00 0.00 0.00 4.79
355 356 1.614413 CCTAGCCATCCCTCTTACGTC 59.386 57.143 0.00 0.00 0.00 4.34
357 358 0.969894 CCCTAGCCATCCCTCTTACG 59.030 60.000 0.00 0.00 0.00 3.18
358 359 0.687920 GCCCTAGCCATCCCTCTTAC 59.312 60.000 0.00 0.00 0.00 2.34
359 360 0.832135 CGCCCTAGCCATCCCTCTTA 60.832 60.000 0.00 0.00 34.57 2.10
360 361 2.143419 CGCCCTAGCCATCCCTCTT 61.143 63.158 0.00 0.00 34.57 2.85
361 362 2.525381 CGCCCTAGCCATCCCTCT 60.525 66.667 0.00 0.00 34.57 3.69
362 363 2.524394 TCGCCCTAGCCATCCCTC 60.524 66.667 0.00 0.00 34.57 4.30
363 364 2.844839 GTCGCCCTAGCCATCCCT 60.845 66.667 0.00 0.00 34.57 4.20
364 365 4.301027 CGTCGCCCTAGCCATCCC 62.301 72.222 0.00 0.00 34.57 3.85
365 366 4.301027 CCGTCGCCCTAGCCATCC 62.301 72.222 0.00 0.00 34.57 3.51
366 367 4.971125 GCCGTCGCCCTAGCCATC 62.971 72.222 0.00 0.00 34.57 3.51
368 369 4.826404 TAGCCGTCGCCCTAGCCA 62.826 66.667 0.00 0.00 34.57 4.75
369 370 3.979739 CTAGCCGTCGCCCTAGCC 61.980 72.222 5.57 0.00 34.57 3.93
370 371 4.649310 GCTAGCCGTCGCCCTAGC 62.649 72.222 20.16 20.16 46.59 3.42
371 372 3.217017 TGCTAGCCGTCGCCCTAG 61.217 66.667 13.29 11.61 35.31 3.02
372 373 3.524606 GTGCTAGCCGTCGCCCTA 61.525 66.667 13.29 0.00 34.57 3.53
381 382 2.203070 CCCATCACGGTGCTAGCC 60.203 66.667 13.29 3.27 0.00 3.93
382 383 1.227380 CTCCCATCACGGTGCTAGC 60.227 63.158 8.10 8.10 0.00 3.42
383 384 1.043116 TCCTCCCATCACGGTGCTAG 61.043 60.000 2.51 0.00 0.00 3.42
384 385 1.001120 TCCTCCCATCACGGTGCTA 59.999 57.895 2.51 0.00 0.00 3.49
385 386 2.284625 TCCTCCCATCACGGTGCT 60.285 61.111 2.51 0.00 0.00 4.40
386 387 2.187946 CTCCTCCCATCACGGTGC 59.812 66.667 2.51 0.00 0.00 5.01
387 388 1.961180 GACCTCCTCCCATCACGGTG 61.961 65.000 0.56 0.56 0.00 4.94
388 389 1.686110 GACCTCCTCCCATCACGGT 60.686 63.158 0.00 0.00 0.00 4.83
389 390 2.435693 GGACCTCCTCCCATCACGG 61.436 68.421 0.00 0.00 31.83 4.94
390 391 1.680522 CTGGACCTCCTCCCATCACG 61.681 65.000 0.00 0.00 38.49 4.35
391 392 1.341156 CCTGGACCTCCTCCCATCAC 61.341 65.000 0.00 0.00 38.49 3.06
392 393 1.003442 CCTGGACCTCCTCCCATCA 59.997 63.158 0.00 0.00 38.49 3.07
393 394 0.762461 CTCCTGGACCTCCTCCCATC 60.762 65.000 0.00 0.00 38.49 3.51
394 395 1.231751 TCTCCTGGACCTCCTCCCAT 61.232 60.000 0.00 0.00 38.49 4.00
395 396 1.862138 TCTCCTGGACCTCCTCCCA 60.862 63.158 0.00 0.00 38.49 4.37
396 397 1.075600 CTCTCCTGGACCTCCTCCC 60.076 68.421 0.00 0.00 38.49 4.30
397 398 1.075600 CCTCTCCTGGACCTCCTCC 60.076 68.421 0.00 0.00 39.97 4.30
398 399 1.760480 GCCTCTCCTGGACCTCCTC 60.760 68.421 0.00 0.00 36.82 3.71
399 400 2.252898 AGCCTCTCCTGGACCTCCT 61.253 63.158 0.00 0.00 36.82 3.69
400 401 2.063378 CAGCCTCTCCTGGACCTCC 61.063 68.421 0.00 0.00 0.00 4.30
401 402 3.627690 CAGCCTCTCCTGGACCTC 58.372 66.667 0.00 0.00 0.00 3.85
407 408 3.406200 CCACCCCAGCCTCTCCTG 61.406 72.222 0.00 0.00 0.00 3.86
410 411 3.635268 CTTGCCACCCCAGCCTCTC 62.635 68.421 0.00 0.00 0.00 3.20
411 412 3.655211 CTTGCCACCCCAGCCTCT 61.655 66.667 0.00 0.00 0.00 3.69
412 413 4.748144 CCTTGCCACCCCAGCCTC 62.748 72.222 0.00 0.00 0.00 4.70
437 438 3.291383 CCTCTCTAGCCCTCGCGG 61.291 72.222 6.13 0.00 41.18 6.46
438 439 3.972276 GCCTCTCTAGCCCTCGCG 61.972 72.222 0.00 0.00 41.18 5.87
439 440 3.972276 CGCCTCTCTAGCCCTCGC 61.972 72.222 0.00 0.00 0.00 5.03
440 441 3.291383 CCGCCTCTCTAGCCCTCG 61.291 72.222 0.00 0.00 0.00 4.63
441 442 0.467659 TAACCGCCTCTCTAGCCCTC 60.468 60.000 0.00 0.00 0.00 4.30
442 443 0.756070 GTAACCGCCTCTCTAGCCCT 60.756 60.000 0.00 0.00 0.00 5.19
443 444 1.041447 TGTAACCGCCTCTCTAGCCC 61.041 60.000 0.00 0.00 0.00 5.19
444 445 0.822164 TTGTAACCGCCTCTCTAGCC 59.178 55.000 0.00 0.00 0.00 3.93
445 446 1.477295 AGTTGTAACCGCCTCTCTAGC 59.523 52.381 0.00 0.00 0.00 3.42
446 447 3.315749 CCTAGTTGTAACCGCCTCTCTAG 59.684 52.174 0.00 0.00 0.00 2.43
447 448 3.285484 CCTAGTTGTAACCGCCTCTCTA 58.715 50.000 0.00 0.00 0.00 2.43
448 449 2.100989 CCTAGTTGTAACCGCCTCTCT 58.899 52.381 0.00 0.00 0.00 3.10
449 450 1.823610 ACCTAGTTGTAACCGCCTCTC 59.176 52.381 0.00 0.00 0.00 3.20
450 451 1.934410 ACCTAGTTGTAACCGCCTCT 58.066 50.000 0.00 0.00 0.00 3.69
451 452 2.100418 CCTACCTAGTTGTAACCGCCTC 59.900 54.545 0.00 0.00 0.00 4.70
452 453 2.105766 CCTACCTAGTTGTAACCGCCT 58.894 52.381 0.00 0.00 0.00 5.52
453 454 1.472201 GCCTACCTAGTTGTAACCGCC 60.472 57.143 0.00 0.00 0.00 6.13
454 455 1.472201 GGCCTACCTAGTTGTAACCGC 60.472 57.143 0.00 0.00 0.00 5.68
455 456 1.202336 CGGCCTACCTAGTTGTAACCG 60.202 57.143 0.00 6.14 35.49 4.44
456 457 1.472201 GCGGCCTACCTAGTTGTAACC 60.472 57.143 0.00 0.00 0.00 2.85
457 458 1.800286 CGCGGCCTACCTAGTTGTAAC 60.800 57.143 0.00 0.00 0.00 2.50
463 464 4.133373 TCCCGCGGCCTACCTAGT 62.133 66.667 22.85 0.00 0.00 2.57
476 477 1.066303 CATCTTCTTCGTCCTCTCCCG 59.934 57.143 0.00 0.00 0.00 5.14
479 480 4.420168 CTGTTCATCTTCTTCGTCCTCTC 58.580 47.826 0.00 0.00 0.00 3.20
484 485 2.996621 CCACCTGTTCATCTTCTTCGTC 59.003 50.000 0.00 0.00 0.00 4.20
486 487 1.734465 GCCACCTGTTCATCTTCTTCG 59.266 52.381 0.00 0.00 0.00 3.79
509 510 0.744414 ATCCAACGGTCAGGAATGCG 60.744 55.000 6.40 0.00 37.48 4.73
511 512 4.273480 GTCAATATCCAACGGTCAGGAATG 59.727 45.833 6.40 6.68 37.48 2.67
512 513 4.451900 GTCAATATCCAACGGTCAGGAAT 58.548 43.478 6.40 0.87 37.48 3.01
541 543 3.199071 TGCCGGTCACTTCTATTTATGGT 59.801 43.478 1.90 0.00 0.00 3.55
543 545 5.056480 TCATGCCGGTCACTTCTATTTATG 58.944 41.667 1.90 0.00 0.00 1.90
545 547 4.746535 TCATGCCGGTCACTTCTATTTA 57.253 40.909 1.90 0.00 0.00 1.40
561 563 5.870978 AGATACCTGCAAAAACAATTCATGC 59.129 36.000 0.00 0.00 37.52 4.06
569 571 3.472652 ACGTCAGATACCTGCAAAAACA 58.527 40.909 0.00 0.00 40.20 2.83
618 620 8.798975 ATATTATGGGACGGATGGAATACTAT 57.201 34.615 0.00 0.00 0.00 2.12
619 621 9.717994 TTATATTATGGGACGGATGGAATACTA 57.282 33.333 0.00 0.00 0.00 1.82
620 622 8.618240 TTATATTATGGGACGGATGGAATACT 57.382 34.615 0.00 0.00 0.00 2.12
621 623 8.701895 TCTTATATTATGGGACGGATGGAATAC 58.298 37.037 0.00 0.00 0.00 1.89
622 624 8.847982 TCTTATATTATGGGACGGATGGAATA 57.152 34.615 0.00 0.00 0.00 1.75
623 625 7.635971 GCTCTTATATTATGGGACGGATGGAAT 60.636 40.741 0.00 0.00 0.00 3.01
624 626 6.351881 GCTCTTATATTATGGGACGGATGGAA 60.352 42.308 0.00 0.00 0.00 3.53
625 627 5.128827 GCTCTTATATTATGGGACGGATGGA 59.871 44.000 0.00 0.00 0.00 3.41
626 628 5.104941 TGCTCTTATATTATGGGACGGATGG 60.105 44.000 0.00 0.00 0.00 3.51
627 629 5.977635 TGCTCTTATATTATGGGACGGATG 58.022 41.667 0.00 0.00 0.00 3.51
628 630 6.814954 ATGCTCTTATATTATGGGACGGAT 57.185 37.500 0.00 0.00 0.00 4.18
629 631 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
630 632 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
652 654 9.745880 CAACAACTACTCTCTCTAGTGTAAAAA 57.254 33.333 0.00 0.00 32.75 1.94
653 655 9.128404 TCAACAACTACTCTCTCTAGTGTAAAA 57.872 33.333 0.00 0.00 32.75 1.52
654 656 8.687292 TCAACAACTACTCTCTCTAGTGTAAA 57.313 34.615 0.00 0.00 32.75 2.01
655 657 8.731605 CATCAACAACTACTCTCTCTAGTGTAA 58.268 37.037 0.00 0.00 32.75 2.41
656 658 8.101419 TCATCAACAACTACTCTCTCTAGTGTA 58.899 37.037 0.00 0.00 32.00 2.90
657 659 6.943146 TCATCAACAACTACTCTCTCTAGTGT 59.057 38.462 0.00 0.00 34.04 3.55
658 660 7.384439 TCATCAACAACTACTCTCTCTAGTG 57.616 40.000 0.00 0.00 0.00 2.74
659 661 6.601613 CCTCATCAACAACTACTCTCTCTAGT 59.398 42.308 0.00 0.00 0.00 2.57
660 662 6.601613 ACCTCATCAACAACTACTCTCTCTAG 59.398 42.308 0.00 0.00 0.00 2.43
661 663 6.486056 ACCTCATCAACAACTACTCTCTCTA 58.514 40.000 0.00 0.00 0.00 2.43
662 664 5.329399 ACCTCATCAACAACTACTCTCTCT 58.671 41.667 0.00 0.00 0.00 3.10
663 665 5.652994 ACCTCATCAACAACTACTCTCTC 57.347 43.478 0.00 0.00 0.00 3.20
664 666 5.540337 TGAACCTCATCAACAACTACTCTCT 59.460 40.000 0.00 0.00 0.00 3.10
665 667 5.784177 TGAACCTCATCAACAACTACTCTC 58.216 41.667 0.00 0.00 0.00 3.20
666 668 5.808366 TGAACCTCATCAACAACTACTCT 57.192 39.130 0.00 0.00 0.00 3.24
667 669 6.483640 ACTTTGAACCTCATCAACAACTACTC 59.516 38.462 0.00 0.00 38.95 2.59
715 734 7.682824 TGTGAAAACTTGTGCAAAATAACATG 58.317 30.769 0.00 0.00 0.00 3.21
763 782 1.202114 CACATGGCATGGTTGGTACAC 59.798 52.381 29.49 0.00 33.19 2.90
765 784 1.202114 CACACATGGCATGGTTGGTAC 59.798 52.381 29.49 0.00 33.60 3.34
982 1034 4.475028 TGCATTGTGAATTTGTGATCGAC 58.525 39.130 0.00 0.00 0.00 4.20
988 1040 2.481185 GGCCTTGCATTGTGAATTTGTG 59.519 45.455 0.00 0.00 0.00 3.33
989 1041 2.369532 AGGCCTTGCATTGTGAATTTGT 59.630 40.909 0.00 0.00 0.00 2.83
990 1042 2.997986 GAGGCCTTGCATTGTGAATTTG 59.002 45.455 6.77 0.00 0.00 2.32
991 1043 2.353011 CGAGGCCTTGCATTGTGAATTT 60.353 45.455 6.77 0.00 0.00 1.82
992 1044 1.203052 CGAGGCCTTGCATTGTGAATT 59.797 47.619 6.77 0.00 0.00 2.17
993 1045 0.813184 CGAGGCCTTGCATTGTGAAT 59.187 50.000 6.77 0.00 0.00 2.57
994 1046 1.865788 GCGAGGCCTTGCATTGTGAA 61.866 55.000 35.91 0.00 39.74 3.18
995 1047 2.334946 GCGAGGCCTTGCATTGTGA 61.335 57.895 35.91 0.00 39.74 3.58
996 1048 2.180017 GCGAGGCCTTGCATTGTG 59.820 61.111 35.91 7.37 39.74 3.33
1015 1067 1.806542 CACGACAACCCTTGAAGATGG 59.193 52.381 0.00 0.00 0.00 3.51
1591 1676 6.356186 TGATCTCATCAGGTGATATTCAGG 57.644 41.667 0.00 0.00 35.97 3.86
1593 1678 6.296259 CCCATGATCTCATCAGGTGATATTCA 60.296 42.308 0.00 0.00 43.53 2.57
1666 1751 2.693267 AAGTCCTAATCGGCAGTTCC 57.307 50.000 0.00 0.00 0.00 3.62
1680 1765 3.550437 ACATGCATCACTCCTAAGTCC 57.450 47.619 0.00 0.00 31.71 3.85
1891 1986 1.075896 ACCGGGCTTTTGGGTGAAA 60.076 52.632 6.32 0.00 31.52 2.69
1908 2003 1.089920 CAAGTGGGAGCTACATGCAC 58.910 55.000 0.00 0.00 45.94 4.57
1909 2004 0.677731 GCAAGTGGGAGCTACATGCA 60.678 55.000 9.77 0.00 45.94 3.96
1910 2005 1.709147 CGCAAGTGGGAGCTACATGC 61.709 60.000 0.00 1.36 38.85 4.06
1911 2006 1.709147 GCGCAAGTGGGAGCTACATG 61.709 60.000 0.30 0.00 41.68 3.21
1912 2007 1.450312 GCGCAAGTGGGAGCTACAT 60.450 57.895 0.30 0.00 41.68 2.29
1913 2008 2.047274 GCGCAAGTGGGAGCTACA 60.047 61.111 0.30 0.00 41.68 2.74
1914 2009 2.047274 TGCGCAAGTGGGAGCTAC 60.047 61.111 8.16 0.00 41.68 3.58
1915 2010 2.265739 CTGCGCAAGTGGGAGCTA 59.734 61.111 13.05 0.00 41.68 3.32
1916 2011 4.711949 CCTGCGCAAGTGGGAGCT 62.712 66.667 13.05 0.00 41.68 4.09
1927 2022 4.821589 CTTCTCCGGACCCTGCGC 62.822 72.222 0.00 0.00 0.00 6.09
1928 2023 4.148825 CCTTCTCCGGACCCTGCG 62.149 72.222 0.00 0.00 0.00 5.18
1929 2024 3.787001 CCCTTCTCCGGACCCTGC 61.787 72.222 0.00 0.00 0.00 4.85
1930 2025 2.284699 ACCCTTCTCCGGACCCTG 60.285 66.667 0.00 0.00 0.00 4.45
1931 2026 2.039137 GACCCTTCTCCGGACCCT 59.961 66.667 0.00 0.00 0.00 4.34
1932 2027 3.082055 GGACCCTTCTCCGGACCC 61.082 72.222 0.00 0.00 0.00 4.46
1938 2033 1.192803 AAGTGGTCGGACCCTTCTCC 61.193 60.000 23.81 5.51 37.50 3.71
1939 2034 0.685660 AAAGTGGTCGGACCCTTCTC 59.314 55.000 23.81 9.42 37.50 2.87
1940 2035 0.396811 CAAAGTGGTCGGACCCTTCT 59.603 55.000 23.81 15.83 37.50 2.85
1941 2036 1.235281 GCAAAGTGGTCGGACCCTTC 61.235 60.000 23.81 13.97 37.50 3.46
1942 2037 1.228154 GCAAAGTGGTCGGACCCTT 60.228 57.895 23.81 21.08 37.50 3.95
1943 2038 2.430367 GCAAAGTGGTCGGACCCT 59.570 61.111 23.81 16.82 37.50 4.34
1944 2039 3.047877 CGCAAAGTGGTCGGACCC 61.048 66.667 23.81 14.91 37.50 4.46
1945 2040 2.280592 ACGCAAAGTGGTCGGACC 60.281 61.111 20.36 20.36 39.22 4.46
1946 2041 0.038892 TAGACGCAAAGTGGTCGGAC 60.039 55.000 0.00 0.00 38.20 4.79
1947 2042 0.892755 ATAGACGCAAAGTGGTCGGA 59.107 50.000 0.00 0.00 38.20 4.55
1948 2043 2.159282 ACTATAGACGCAAAGTGGTCGG 60.159 50.000 6.78 0.00 38.20 4.79
1949 2044 3.146618 ACTATAGACGCAAAGTGGTCG 57.853 47.619 6.78 0.00 38.20 4.79
1950 2045 4.033684 CGTACTATAGACGCAAAGTGGTC 58.966 47.826 6.78 0.00 32.89 4.02
1951 2046 4.025015 CGTACTATAGACGCAAAGTGGT 57.975 45.455 6.78 0.00 32.89 4.16
1960 2055 2.350580 GGAAGGCTGCGTACTATAGACG 60.351 54.545 6.78 12.64 43.19 4.18
1961 2056 2.030096 GGGAAGGCTGCGTACTATAGAC 60.030 54.545 6.78 0.00 0.00 2.59
1962 2057 2.236766 GGGAAGGCTGCGTACTATAGA 58.763 52.381 6.78 0.00 0.00 1.98
1963 2058 1.272769 GGGGAAGGCTGCGTACTATAG 59.727 57.143 0.00 0.00 0.00 1.31
1964 2059 1.133262 AGGGGAAGGCTGCGTACTATA 60.133 52.381 0.00 0.00 0.00 1.31
1965 2060 0.398664 AGGGGAAGGCTGCGTACTAT 60.399 55.000 0.00 0.00 0.00 2.12
1966 2061 0.259647 TAGGGGAAGGCTGCGTACTA 59.740 55.000 0.00 0.00 0.00 1.82
1967 2062 1.001248 TAGGGGAAGGCTGCGTACT 59.999 57.895 0.00 0.00 0.00 2.73
1968 2063 1.143401 GTAGGGGAAGGCTGCGTAC 59.857 63.158 0.00 0.00 0.00 3.67
1969 2064 0.689745 ATGTAGGGGAAGGCTGCGTA 60.690 55.000 0.00 0.00 0.00 4.42
1970 2065 1.562672 AATGTAGGGGAAGGCTGCGT 61.563 55.000 0.00 0.00 0.00 5.24
1971 2066 0.394352 AAATGTAGGGGAAGGCTGCG 60.394 55.000 0.00 0.00 0.00 5.18
1972 2067 1.064389 AGAAATGTAGGGGAAGGCTGC 60.064 52.381 0.00 0.00 0.00 5.25
1973 2068 2.025887 ACAGAAATGTAGGGGAAGGCTG 60.026 50.000 0.00 0.00 0.00 4.85
1974 2069 2.279173 ACAGAAATGTAGGGGAAGGCT 58.721 47.619 0.00 0.00 0.00 4.58
1975 2070 2.808906 ACAGAAATGTAGGGGAAGGC 57.191 50.000 0.00 0.00 0.00 4.35
1976 2071 5.425539 TCTCTTACAGAAATGTAGGGGAAGG 59.574 44.000 0.00 0.00 29.57 3.46
1977 2072 6.155393 AGTCTCTTACAGAAATGTAGGGGAAG 59.845 42.308 2.12 0.00 33.57 3.46
1978 2073 6.023603 AGTCTCTTACAGAAATGTAGGGGAA 58.976 40.000 2.12 0.00 33.57 3.97
1979 2074 5.422331 CAGTCTCTTACAGAAATGTAGGGGA 59.578 44.000 0.00 0.00 29.94 4.81
1980 2075 5.187967 ACAGTCTCTTACAGAAATGTAGGGG 59.812 44.000 0.00 0.00 33.46 4.79
1981 2076 6.153680 AGACAGTCTCTTACAGAAATGTAGGG 59.846 42.308 0.00 0.00 34.75 3.53
1982 2077 7.164230 AGACAGTCTCTTACAGAAATGTAGG 57.836 40.000 0.00 0.00 34.75 3.18
1983 2078 8.300286 TGAAGACAGTCTCTTACAGAAATGTAG 58.700 37.037 2.72 0.00 39.53 2.74
1984 2079 8.178313 TGAAGACAGTCTCTTACAGAAATGTA 57.822 34.615 2.72 0.00 39.53 2.29
1985 2080 7.055667 TGAAGACAGTCTCTTACAGAAATGT 57.944 36.000 2.72 0.00 39.53 2.71
1986 2081 7.869937 TCTTGAAGACAGTCTCTTACAGAAATG 59.130 37.037 2.72 0.00 39.53 2.32
1987 2082 7.870445 GTCTTGAAGACAGTCTCTTACAGAAAT 59.130 37.037 19.73 0.00 44.45 2.17
1988 2083 7.203910 GTCTTGAAGACAGTCTCTTACAGAAA 58.796 38.462 19.73 0.00 44.45 2.52
1989 2084 6.740110 GTCTTGAAGACAGTCTCTTACAGAA 58.260 40.000 19.73 0.00 44.45 3.02
1990 2085 6.320494 GTCTTGAAGACAGTCTCTTACAGA 57.680 41.667 19.73 0.00 44.45 3.41
2003 2098 6.793492 AAGCTATTGTCAAGTCTTGAAGAC 57.207 37.500 17.22 17.22 45.38 3.01
2004 2099 7.387948 GGTAAAGCTATTGTCAAGTCTTGAAGA 59.612 37.037 16.86 8.94 42.15 2.87
2005 2100 7.173218 TGGTAAAGCTATTGTCAAGTCTTGAAG 59.827 37.037 16.86 11.52 42.15 3.02
2006 2101 6.995686 TGGTAAAGCTATTGTCAAGTCTTGAA 59.004 34.615 16.86 3.13 42.15 2.69
2007 2102 6.426937 GTGGTAAAGCTATTGTCAAGTCTTGA 59.573 38.462 11.36 11.36 37.33 3.02
2008 2103 6.428159 AGTGGTAAAGCTATTGTCAAGTCTTG 59.572 38.462 6.21 6.21 0.00 3.02
2009 2104 6.428159 CAGTGGTAAAGCTATTGTCAAGTCTT 59.572 38.462 0.00 0.00 0.00 3.01
2010 2105 5.934625 CAGTGGTAAAGCTATTGTCAAGTCT 59.065 40.000 0.00 0.00 0.00 3.24
2011 2106 5.390991 GCAGTGGTAAAGCTATTGTCAAGTC 60.391 44.000 0.00 0.00 0.00 3.01
2012 2107 4.455877 GCAGTGGTAAAGCTATTGTCAAGT 59.544 41.667 0.00 0.00 0.00 3.16
2013 2108 4.436050 CGCAGTGGTAAAGCTATTGTCAAG 60.436 45.833 0.00 0.00 0.00 3.02
2014 2109 3.435327 CGCAGTGGTAAAGCTATTGTCAA 59.565 43.478 0.00 0.00 0.00 3.18
2015 2110 3.000041 CGCAGTGGTAAAGCTATTGTCA 59.000 45.455 0.00 0.00 0.00 3.58
2016 2111 2.223044 GCGCAGTGGTAAAGCTATTGTC 60.223 50.000 0.30 0.00 0.00 3.18
2017 2112 1.737793 GCGCAGTGGTAAAGCTATTGT 59.262 47.619 0.30 0.00 0.00 2.71
2018 2113 1.064060 GGCGCAGTGGTAAAGCTATTG 59.936 52.381 10.83 0.00 0.00 1.90
2019 2114 1.339631 TGGCGCAGTGGTAAAGCTATT 60.340 47.619 10.83 0.00 0.00 1.73
2020 2115 0.251916 TGGCGCAGTGGTAAAGCTAT 59.748 50.000 10.83 0.00 0.00 2.97
2021 2116 0.035598 TTGGCGCAGTGGTAAAGCTA 59.964 50.000 10.83 0.00 0.00 3.32
2022 2117 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2023 2118 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2024 2119 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2025 2120 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2026 2121 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2027 2122 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2035 2130 4.803908 GGAAGGGGAGCCTTGGCG 62.804 72.222 5.95 0.00 0.00 5.69
2036 2131 4.448976 GGGAAGGGGAGCCTTGGC 62.449 72.222 2.97 2.97 0.00 4.52
2037 2132 1.307866 TAGGGAAGGGGAGCCTTGG 60.308 63.158 0.00 0.00 0.00 3.61
2038 2133 0.621862 ACTAGGGAAGGGGAGCCTTG 60.622 60.000 0.00 0.00 0.00 3.61
2039 2134 0.121402 AACTAGGGAAGGGGAGCCTT 59.879 55.000 0.00 0.00 0.00 4.35
2040 2135 0.326713 GAACTAGGGAAGGGGAGCCT 60.327 60.000 0.00 0.00 0.00 4.58
2041 2136 0.620700 TGAACTAGGGAAGGGGAGCC 60.621 60.000 0.00 0.00 0.00 4.70
2042 2137 1.418264 GATGAACTAGGGAAGGGGAGC 59.582 57.143 0.00 0.00 0.00 4.70
2043 2138 2.050918 GGATGAACTAGGGAAGGGGAG 58.949 57.143 0.00 0.00 0.00 4.30
2044 2139 1.368203 TGGATGAACTAGGGAAGGGGA 59.632 52.381 0.00 0.00 0.00 4.81
2045 2140 1.893315 TGGATGAACTAGGGAAGGGG 58.107 55.000 0.00 0.00 0.00 4.79
2046 2141 4.273318 CTTTTGGATGAACTAGGGAAGGG 58.727 47.826 0.00 0.00 0.00 3.95
2047 2142 3.696548 GCTTTTGGATGAACTAGGGAAGG 59.303 47.826 0.00 0.00 0.00 3.46
2048 2143 4.335416 TGCTTTTGGATGAACTAGGGAAG 58.665 43.478 0.00 0.00 0.00 3.46
2049 2144 4.380843 TGCTTTTGGATGAACTAGGGAA 57.619 40.909 0.00 0.00 0.00 3.97
2050 2145 4.380843 TTGCTTTTGGATGAACTAGGGA 57.619 40.909 0.00 0.00 0.00 4.20
2051 2146 5.467035 TTTTGCTTTTGGATGAACTAGGG 57.533 39.130 0.00 0.00 0.00 3.53
2086 2181 8.552034 CGTGTTATCAACTTCTTCTCTTCTTTT 58.448 33.333 0.00 0.00 0.00 2.27
2087 2182 7.307455 GCGTGTTATCAACTTCTTCTCTTCTTT 60.307 37.037 0.00 0.00 0.00 2.52
2088 2183 6.146347 GCGTGTTATCAACTTCTTCTCTTCTT 59.854 38.462 0.00 0.00 0.00 2.52
2089 2184 5.635700 GCGTGTTATCAACTTCTTCTCTTCT 59.364 40.000 0.00 0.00 0.00 2.85
2090 2185 5.163943 GGCGTGTTATCAACTTCTTCTCTTC 60.164 44.000 0.00 0.00 0.00 2.87
2091 2186 4.691216 GGCGTGTTATCAACTTCTTCTCTT 59.309 41.667 0.00 0.00 0.00 2.85
2092 2187 4.021016 AGGCGTGTTATCAACTTCTTCTCT 60.021 41.667 0.00 0.00 0.00 3.10
2093 2188 4.246458 AGGCGTGTTATCAACTTCTTCTC 58.754 43.478 0.00 0.00 0.00 2.87
2094 2189 4.273148 AGGCGTGTTATCAACTTCTTCT 57.727 40.909 0.00 0.00 0.00 2.85
2095 2190 4.142881 GGAAGGCGTGTTATCAACTTCTTC 60.143 45.833 0.00 0.00 34.51 2.87
2096 2191 3.751698 GGAAGGCGTGTTATCAACTTCTT 59.248 43.478 0.00 0.00 34.51 2.52
2097 2192 3.244422 TGGAAGGCGTGTTATCAACTTCT 60.244 43.478 0.00 0.00 34.51 2.85
2098 2193 3.071479 TGGAAGGCGTGTTATCAACTTC 58.929 45.455 0.00 0.00 33.93 3.01
2099 2194 2.812011 GTGGAAGGCGTGTTATCAACTT 59.188 45.455 0.00 0.00 0.00 2.66
2100 2195 2.423577 GTGGAAGGCGTGTTATCAACT 58.576 47.619 0.00 0.00 0.00 3.16
2101 2196 1.467342 GGTGGAAGGCGTGTTATCAAC 59.533 52.381 0.00 0.00 0.00 3.18
2102 2197 1.349688 AGGTGGAAGGCGTGTTATCAA 59.650 47.619 0.00 0.00 0.00 2.57
2103 2198 0.981183 AGGTGGAAGGCGTGTTATCA 59.019 50.000 0.00 0.00 0.00 2.15
2104 2199 2.007608 GAAGGTGGAAGGCGTGTTATC 58.992 52.381 0.00 0.00 0.00 1.75
2105 2200 1.674817 CGAAGGTGGAAGGCGTGTTAT 60.675 52.381 0.00 0.00 0.00 1.89
2106 2201 0.320073 CGAAGGTGGAAGGCGTGTTA 60.320 55.000 0.00 0.00 0.00 2.41
2107 2202 1.597027 CGAAGGTGGAAGGCGTGTT 60.597 57.895 0.00 0.00 0.00 3.32
2108 2203 2.030562 CGAAGGTGGAAGGCGTGT 59.969 61.111 0.00 0.00 0.00 4.49
2124 2219 1.591158 GTACATGCATTCACCGTACCG 59.409 52.381 11.39 0.00 32.46 4.02
2125 2220 1.937899 GGTACATGCATTCACCGTACC 59.062 52.381 21.06 21.06 42.47 3.34
2126 2221 2.623535 TGGTACATGCATTCACCGTAC 58.376 47.619 17.60 15.46 35.38 3.67
2127 2222 3.336138 TTGGTACATGCATTCACCGTA 57.664 42.857 17.60 5.99 39.30 4.02
2128 2223 2.192664 TTGGTACATGCATTCACCGT 57.807 45.000 17.60 6.86 39.30 4.83
2129 2224 2.682352 TGATTGGTACATGCATTCACCG 59.318 45.455 17.60 1.34 39.30 4.94
2137 2232 6.158598 AGTGTTGAAATTGATTGGTACATGC 58.841 36.000 0.00 0.00 39.30 4.06
2162 2257 6.210984 ACCGAAAGAGTCTAAACTTGAGGTAT 59.789 38.462 0.00 0.00 36.08 2.73
2163 2258 5.537674 ACCGAAAGAGTCTAAACTTGAGGTA 59.462 40.000 0.00 0.00 36.08 3.08
2189 2284 4.592942 AGCATTGTTGATCTCAGCCTAAA 58.407 39.130 0.00 0.00 0.00 1.85
2193 2288 2.362736 TGAGCATTGTTGATCTCAGCC 58.637 47.619 0.00 0.00 39.07 4.85
2222 4966 1.365699 GAGGTTCGGCGCATAGAAAA 58.634 50.000 10.83 0.00 0.00 2.29
2261 5005 2.633509 GCCTCCTTGCCAGCTTGTG 61.634 63.158 0.00 0.00 0.00 3.33
2340 5097 4.153958 TGTTGCACGCTTTATAAAGGTG 57.846 40.909 26.32 26.32 38.79 4.00
2351 5108 2.985896 ACCATAACTATGTTGCACGCT 58.014 42.857 0.00 0.00 31.82 5.07
2385 5142 4.883083 TCTTATGATGATGCGAGGGTAAC 58.117 43.478 0.00 0.00 0.00 2.50
2386 5143 4.021104 CCTCTTATGATGATGCGAGGGTAA 60.021 45.833 4.38 0.00 35.54 2.85
2387 5144 3.511540 CCTCTTATGATGATGCGAGGGTA 59.488 47.826 4.38 0.00 35.54 3.69
2388 5145 2.301296 CCTCTTATGATGATGCGAGGGT 59.699 50.000 4.38 0.00 35.54 4.34
2389 5146 2.301296 ACCTCTTATGATGATGCGAGGG 59.699 50.000 13.38 0.00 41.72 4.30
2390 5147 3.674528 ACCTCTTATGATGATGCGAGG 57.325 47.619 9.10 9.10 42.78 4.63
2391 5148 3.186001 GCAACCTCTTATGATGATGCGAG 59.814 47.826 0.00 0.00 30.34 5.03
2392 5149 3.133691 GCAACCTCTTATGATGATGCGA 58.866 45.455 0.00 0.00 30.34 5.10
2393 5150 2.225019 GGCAACCTCTTATGATGATGCG 59.775 50.000 8.98 0.00 37.44 4.73
2448 5398 1.632589 GCAAAACCTCCCTTCATGGT 58.367 50.000 0.00 0.00 35.29 3.55
2472 5422 0.465705 TCCCGTCATGCTCTTGGATC 59.534 55.000 0.00 0.00 0.00 3.36
2475 5425 1.021390 GTGTCCCGTCATGCTCTTGG 61.021 60.000 0.00 0.00 0.00 3.61
2487 5437 2.872245 CAGGCATTAGTATTGTGTCCCG 59.128 50.000 0.00 0.00 0.00 5.14
2494 5444 6.692681 CGTCCAAAAATCAGGCATTAGTATTG 59.307 38.462 0.00 0.00 0.00 1.90
2495 5445 6.601613 TCGTCCAAAAATCAGGCATTAGTATT 59.398 34.615 0.00 0.00 0.00 1.89
2504 5454 1.200020 CTGGTCGTCCAAAAATCAGGC 59.800 52.381 2.32 0.00 43.81 4.85
2507 5457 2.270352 AGCTGGTCGTCCAAAAATCA 57.730 45.000 2.32 0.00 43.81 2.57
2540 5490 0.968405 GCATGGGAGTCAAAAGGCAA 59.032 50.000 0.00 0.00 0.00 4.52
2543 5493 3.243636 GCATATGCATGGGAGTCAAAAGG 60.244 47.826 22.84 0.00 41.59 3.11
2544 5494 3.243636 GGCATATGCATGGGAGTCAAAAG 60.244 47.826 28.07 0.00 44.36 2.27
2545 5495 2.694628 GGCATATGCATGGGAGTCAAAA 59.305 45.455 28.07 0.00 44.36 2.44
2546 5496 2.309613 GGCATATGCATGGGAGTCAAA 58.690 47.619 28.07 0.00 44.36 2.69
2547 5497 1.214923 TGGCATATGCATGGGAGTCAA 59.785 47.619 28.07 0.00 44.36 3.18
2548 5498 0.845337 TGGCATATGCATGGGAGTCA 59.155 50.000 28.07 11.93 44.36 3.41
2549 5499 1.242076 GTGGCATATGCATGGGAGTC 58.758 55.000 28.07 9.45 44.36 3.36
2550 5500 0.535780 CGTGGCATATGCATGGGAGT 60.536 55.000 28.07 0.00 44.36 3.85
2551 5501 1.239296 CCGTGGCATATGCATGGGAG 61.239 60.000 28.07 12.63 44.36 4.30
2552 5502 1.228215 CCGTGGCATATGCATGGGA 60.228 57.895 28.07 4.44 44.36 4.37
2553 5503 0.609957 ATCCGTGGCATATGCATGGG 60.610 55.000 28.07 22.83 44.36 4.00
2554 5504 1.250328 AATCCGTGGCATATGCATGG 58.750 50.000 28.07 24.71 44.36 3.66
2555 5505 3.252944 TGTTAATCCGTGGCATATGCATG 59.747 43.478 28.07 18.10 44.36 4.06
2556 5506 3.485394 TGTTAATCCGTGGCATATGCAT 58.515 40.909 28.07 10.62 44.36 3.96
2557 5507 2.924421 TGTTAATCCGTGGCATATGCA 58.076 42.857 28.07 12.31 44.36 3.96
2558 5508 3.304659 CCTTGTTAATCCGTGGCATATGC 60.305 47.826 19.79 19.79 41.14 3.14
2559 5509 3.882888 ACCTTGTTAATCCGTGGCATATG 59.117 43.478 0.00 0.00 0.00 1.78
2560 5510 4.134563 GACCTTGTTAATCCGTGGCATAT 58.865 43.478 0.00 0.00 0.00 1.78
2561 5511 3.537580 GACCTTGTTAATCCGTGGCATA 58.462 45.455 0.00 0.00 0.00 3.14
2562 5512 2.365582 GACCTTGTTAATCCGTGGCAT 58.634 47.619 0.00 0.00 0.00 4.40
2563 5513 1.816074 GACCTTGTTAATCCGTGGCA 58.184 50.000 0.00 0.00 0.00 4.92
2564 5514 0.725117 CGACCTTGTTAATCCGTGGC 59.275 55.000 0.00 0.00 0.00 5.01
2565 5515 1.730064 CACGACCTTGTTAATCCGTGG 59.270 52.381 0.00 0.00 42.23 4.94
2566 5516 1.127951 GCACGACCTTGTTAATCCGTG 59.872 52.381 0.00 0.00 46.71 4.94
2567 5517 1.270412 TGCACGACCTTGTTAATCCGT 60.270 47.619 0.00 0.00 0.00 4.69
2568 5518 1.434555 TGCACGACCTTGTTAATCCG 58.565 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.