Multiple sequence alignment - TraesCS2D01G152200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G152200 chr2D 100.000 4177 0 0 1 4177 95421504 95417328 0.000000e+00 7714.0
1 TraesCS2D01G152200 chr2D 96.512 86 2 1 2777 2862 615394353 615394269 1.570000e-29 141.0
2 TraesCS2D01G152200 chr2B 92.131 2224 146 18 559 2779 146915769 146913572 0.000000e+00 3110.0
3 TraesCS2D01G152200 chr2B 94.363 479 20 5 2864 3341 146913571 146913099 0.000000e+00 728.0
4 TraesCS2D01G152200 chr2B 87.649 251 31 0 3647 3897 146911353 146911103 4.080000e-75 292.0
5 TraesCS2D01G152200 chr2B 91.379 58 5 0 3554 3611 16202075 16202132 3.460000e-11 80.5
6 TraesCS2D01G152200 chr2A 89.047 2255 178 35 551 2778 93938690 93936478 0.000000e+00 2732.0
7 TraesCS2D01G152200 chr2A 95.151 598 16 7 2861 3453 93936479 93935890 0.000000e+00 931.0
8 TraesCS2D01G152200 chr2A 91.829 563 26 8 3628 4177 93935668 93935113 0.000000e+00 767.0
9 TraesCS2D01G152200 chr2A 87.302 567 64 7 9 569 93939265 93938701 3.520000e-180 641.0
10 TraesCS2D01G152200 chr2A 89.535 86 5 1 3452 3533 93935811 93935726 5.710000e-19 106.0
11 TraesCS2D01G152200 chr2A 94.915 59 3 0 3554 3612 755852673 755852615 4.450000e-15 93.5
12 TraesCS2D01G152200 chr5B 94.898 98 3 2 2777 2874 629934766 629934861 7.230000e-33 152.0
13 TraesCS2D01G152200 chr5B 96.591 88 2 1 2775 2862 488608201 488608115 1.210000e-30 145.0
14 TraesCS2D01G152200 chr4B 96.629 89 1 2 2774 2862 4556844 4556758 3.370000e-31 147.0
15 TraesCS2D01G152200 chr1B 95.652 92 1 3 2772 2862 681691002 681691091 1.210000e-30 145.0
16 TraesCS2D01G152200 chr7D 96.552 87 2 1 2776 2862 633878852 633878767 4.350000e-30 143.0
17 TraesCS2D01G152200 chr7D 91.803 61 5 0 3554 3614 620330030 620330090 7.440000e-13 86.1
18 TraesCS2D01G152200 chr7B 96.552 87 1 2 2777 2863 43549669 43549585 4.350000e-30 143.0
19 TraesCS2D01G152200 chr3B 95.556 90 3 1 2774 2863 690416890 690416978 4.350000e-30 143.0
20 TraesCS2D01G152200 chr3B 94.444 90 4 1 2773 2862 488190467 488190555 2.030000e-28 137.0
21 TraesCS2D01G152200 chr4A 96.491 57 0 1 3554 3610 628636983 628636929 4.450000e-15 93.5
22 TraesCS2D01G152200 chr6A 94.737 57 3 0 3554 3610 3111339 3111395 5.750000e-14 89.8
23 TraesCS2D01G152200 chr5A 94.737 57 3 0 3554 3610 300157108 300157164 5.750000e-14 89.8
24 TraesCS2D01G152200 chr7A 91.228 57 5 0 3554 3610 697006728 697006672 1.250000e-10 78.7
25 TraesCS2D01G152200 chr6B 91.228 57 5 0 3554 3610 664477198 664477142 1.250000e-10 78.7
26 TraesCS2D01G152200 chr3D 92.593 54 3 1 3554 3607 453147379 453147327 4.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G152200 chr2D 95417328 95421504 4176 True 7714.000000 7714 100.0000 1 4177 1 chr2D.!!$R1 4176
1 TraesCS2D01G152200 chr2B 146911103 146915769 4666 True 1376.666667 3110 91.3810 559 3897 3 chr2B.!!$R1 3338
2 TraesCS2D01G152200 chr2A 93935113 93939265 4152 True 1035.400000 2732 90.5728 9 4177 5 chr2A.!!$R2 4168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 694 0.250467 GTAGCATCATCATGGGCCGT 60.250 55.0 0.00 0.0 0.00 5.68 F
1040 1076 0.250338 GTCCCTTTTCCAGTGCGAGT 60.250 55.0 0.00 0.0 0.00 4.18 F
1569 1615 0.887247 TGTTGCTGTGCAGTTTGTGT 59.113 45.0 0.00 0.0 40.61 3.72 F
3077 3132 0.317479 GGTCAGACACAACCGCTACT 59.683 55.0 2.17 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1593 0.173029 CAAACTGCACAGCAACACCA 59.827 50.0 0.0 0.00 38.41 4.17 R
2802 2857 0.323629 TAAACTGAACTCCCCCAGCG 59.676 55.0 0.0 0.00 33.90 5.18 R
3128 3183 0.317854 TCATGTCATCGACGATCGCC 60.318 55.0 16.6 2.22 40.21 5.54 R
3886 5505 1.031235 TGTTCAACTACGACCCGACA 58.969 50.0 0.0 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.092429 TCCAGATAACAAGCACATCCCC 60.092 50.000 0.00 0.00 0.00 4.81
52 53 3.068560 CAAGCACATCCCCAAAACAATG 58.931 45.455 0.00 0.00 0.00 2.82
53 54 2.607499 AGCACATCCCCAAAACAATGA 58.393 42.857 0.00 0.00 0.00 2.57
54 55 2.564062 AGCACATCCCCAAAACAATGAG 59.436 45.455 0.00 0.00 0.00 2.90
55 56 2.932187 GCACATCCCCAAAACAATGAGC 60.932 50.000 0.00 0.00 0.00 4.26
58 59 3.647590 ACATCCCCAAAACAATGAGCTTT 59.352 39.130 0.00 0.00 0.00 3.51
60 61 5.306678 ACATCCCCAAAACAATGAGCTTTTA 59.693 36.000 0.00 0.00 0.00 1.52
64 65 7.286313 TCCCCAAAACAATGAGCTTTTATTTT 58.714 30.769 0.00 0.00 0.00 1.82
109 111 8.448615 CAATATACATATGCATGGAGAACACAG 58.551 37.037 10.16 0.00 36.39 3.66
110 112 4.226427 ACATATGCATGGAGAACACAGT 57.774 40.909 10.16 0.00 36.39 3.55
111 113 5.357742 ACATATGCATGGAGAACACAGTA 57.642 39.130 10.16 0.00 36.39 2.74
121 123 6.525578 TGGAGAACACAGTATTTCTCGTAT 57.474 37.500 14.10 0.00 45.95 3.06
175 177 7.089538 TGCAACAAATACCAAACATATGAGTG 58.910 34.615 10.38 6.57 0.00 3.51
177 179 7.975616 GCAACAAATACCAAACATATGAGTGAT 59.024 33.333 10.38 0.00 0.00 3.06
178 180 9.507280 CAACAAATACCAAACATATGAGTGATC 57.493 33.333 10.38 0.00 0.00 2.92
187 189 5.301835 ACATATGAGTGATCAGGGAAAGG 57.698 43.478 10.38 0.00 0.00 3.11
202 204 5.066505 CAGGGAAAGGTATTCCATTTTCTCG 59.933 44.000 9.27 0.00 40.32 4.04
216 218 6.152661 TCCATTTTCTCGCAACCTTTGATTAT 59.847 34.615 0.00 0.00 0.00 1.28
244 246 9.352163 GAATTACAATAAAGTTTGCAAAACGTG 57.648 29.630 14.67 8.88 0.00 4.49
265 267 6.606395 ACGTGTGAGTAATTAGAGGAAGGTAT 59.394 38.462 0.00 0.00 0.00 2.73
386 390 9.836076 AAACTTGGAAGAATAACTATAAAACGC 57.164 29.630 0.00 0.00 0.00 4.84
440 445 6.842163 ACCATCTTAACTCGTGCTTTTTATG 58.158 36.000 0.00 0.00 0.00 1.90
445 450 4.568152 AACTCGTGCTTTTTATGTTGCT 57.432 36.364 0.00 0.00 0.00 3.91
449 454 7.372451 ACTCGTGCTTTTTATGTTGCTATAA 57.628 32.000 0.00 0.00 0.00 0.98
484 489 9.861138 TGCTTGTTAAATCAATTTGAAATTTCG 57.139 25.926 13.34 0.00 0.00 3.46
522 527 9.736023 CTATTTAATGGAAGTTAGAAATGCCAC 57.264 33.333 0.00 0.00 0.00 5.01
528 533 5.048153 GAAGTTAGAAATGCCACTTCCAC 57.952 43.478 0.00 0.00 39.43 4.02
531 537 5.140454 AGTTAGAAATGCCACTTCCACTTT 58.860 37.500 0.00 0.00 0.00 2.66
533 539 6.098266 AGTTAGAAATGCCACTTCCACTTTTT 59.902 34.615 0.00 0.00 0.00 1.94
538 544 4.846779 TGCCACTTCCACTTTTTATGAC 57.153 40.909 0.00 0.00 0.00 3.06
540 546 4.892934 TGCCACTTCCACTTTTTATGACTT 59.107 37.500 0.00 0.00 0.00 3.01
543 549 6.672147 CCACTTCCACTTTTTATGACTTGAG 58.328 40.000 0.00 0.00 0.00 3.02
554 560 8.884124 TTTTTATGACTTGAGGATTTCCAGAT 57.116 30.769 0.00 0.00 38.89 2.90
557 563 9.973661 TTTATGACTTGAGGATTTCCAGATTAA 57.026 29.630 0.00 0.00 38.89 1.40
622 657 2.517402 GGGTTGGCCGAACACACA 60.517 61.111 11.09 0.00 37.96 3.72
623 658 2.719354 GGTTGGCCGAACACACAC 59.281 61.111 1.97 0.00 36.12 3.82
624 659 2.326550 GTTGGCCGAACACACACG 59.673 61.111 11.69 0.00 34.35 4.49
631 666 1.005512 CGAACACACACGGATGGGA 60.006 57.895 0.00 0.00 31.57 4.37
632 667 1.014044 CGAACACACACGGATGGGAG 61.014 60.000 0.00 0.00 31.57 4.30
633 668 1.298859 GAACACACACGGATGGGAGC 61.299 60.000 0.00 0.00 31.57 4.70
635 670 2.607750 ACACACGGATGGGAGCCT 60.608 61.111 0.00 0.00 31.57 4.58
636 671 2.187946 CACACGGATGGGAGCCTC 59.812 66.667 0.00 0.00 0.00 4.70
649 684 1.460305 AGCCTCCCCGTAGCATCAT 60.460 57.895 0.00 0.00 0.00 2.45
652 687 0.979665 CCTCCCCGTAGCATCATCAT 59.020 55.000 0.00 0.00 0.00 2.45
659 694 0.250467 GTAGCATCATCATGGGCCGT 60.250 55.000 0.00 0.00 0.00 5.68
809 844 1.153349 CGCTCCCAAACCCTAGCTC 60.153 63.158 0.00 0.00 32.73 4.09
884 919 2.187946 CGCTTCCTTCTCCCGCAT 59.812 61.111 0.00 0.00 0.00 4.73
1040 1076 0.250338 GTCCCTTTTCCAGTGCGAGT 60.250 55.000 0.00 0.00 0.00 4.18
1087 1123 2.700773 GGAAATGGCGGCTGTGGTC 61.701 63.158 11.43 0.35 0.00 4.02
1146 1182 2.969300 ATTGGTTGGTCGCCACGGTT 62.969 55.000 0.00 0.00 35.46 4.44
1205 1241 2.826128 TCGTGGCTAGATGTTGAGAACT 59.174 45.455 0.00 0.00 0.00 3.01
1242 1278 3.196685 AGCATCTTAGAGAAGGTGTGGTC 59.803 47.826 0.30 0.00 44.48 4.02
1345 1381 7.611213 TTTAGATTAGCTTAGAGTTTGTGGC 57.389 36.000 0.00 0.00 0.00 5.01
1368 1404 4.395583 GCTGTTGCTGCTGCGGTC 62.396 66.667 10.62 3.25 43.34 4.79
1369 1405 4.081030 CTGTTGCTGCTGCGGTCG 62.081 66.667 10.62 0.00 43.34 4.79
1385 1431 4.338964 TGCGGTCGTTATCTAGGATTAACA 59.661 41.667 10.00 0.00 0.00 2.41
1386 1432 4.916249 GCGGTCGTTATCTAGGATTAACAG 59.084 45.833 10.00 5.24 0.00 3.16
1428 1474 1.271001 TGGTGTTGCTGTGATCTGAGG 60.271 52.381 0.00 0.00 0.00 3.86
1466 1512 8.874156 TGATGTTTAATCATCTGGTATAGCTCT 58.126 33.333 21.45 0.00 43.03 4.09
1476 1522 5.706447 TCTGGTATAGCTCTAAGTGGATGT 58.294 41.667 3.20 0.00 0.00 3.06
1491 1537 1.160137 GATGTCCTTGTGCCTGTGAC 58.840 55.000 0.00 0.00 0.00 3.67
1517 1563 9.764870 CAAGTGTTAGAAGTTCATATGTGATTG 57.235 33.333 5.50 0.00 33.56 2.67
1537 1583 8.540492 GTGATTGTTCAGTATAAGTCATTACCG 58.460 37.037 0.00 0.00 30.85 4.02
1547 1593 9.086758 AGTATAAGTCATTACCGTTATAGGCTT 57.913 33.333 0.00 0.00 33.69 4.35
1548 1594 9.136952 GTATAAGTCATTACCGTTATAGGCTTG 57.863 37.037 0.00 0.00 33.69 4.01
1549 1595 4.957296 AGTCATTACCGTTATAGGCTTGG 58.043 43.478 0.00 0.00 33.69 3.61
1550 1596 4.407945 AGTCATTACCGTTATAGGCTTGGT 59.592 41.667 0.00 0.00 36.72 3.67
1559 1605 1.538047 ATAGGCTTGGTGTTGCTGTG 58.462 50.000 0.00 0.00 0.00 3.66
1561 1607 2.784356 GGCTTGGTGTTGCTGTGCA 61.784 57.895 0.00 0.00 36.47 4.57
1569 1615 0.887247 TGTTGCTGTGCAGTTTGTGT 59.113 45.000 0.00 0.00 40.61 3.72
1576 1622 1.742831 TGTGCAGTTTGTGTCAACTCC 59.257 47.619 0.00 0.00 0.00 3.85
1588 1634 1.199558 GTCAACTCCGCTTCTCGTAGT 59.800 52.381 0.00 0.00 39.11 2.73
1592 1638 1.738908 ACTCCGCTTCTCGTAGTCTTC 59.261 52.381 0.00 0.00 31.40 2.87
1765 1811 5.352846 TGTTTCCTTTGGTTTAGCTTTTTGC 59.647 36.000 0.00 0.00 43.29 3.68
1798 1844 4.323868 GGAAGCAGAGGAATAACCAACTCT 60.324 45.833 0.00 0.00 40.72 3.24
1806 1852 7.332182 CAGAGGAATAACCAACTCTTAACTGAC 59.668 40.741 0.00 0.00 38.18 3.51
1809 1855 6.935208 GGAATAACCAACTCTTAACTGACTGT 59.065 38.462 0.00 0.00 38.79 3.55
1822 1868 9.832445 TCTTAACTGACTGTTCTTTTGAATACT 57.168 29.630 0.44 0.00 40.94 2.12
1932 1978 3.628017 CGTTGGTTAGCCTTTGAACTTG 58.372 45.455 0.00 0.00 35.27 3.16
1935 1981 5.048991 CGTTGGTTAGCCTTTGAACTTGTAT 60.049 40.000 0.00 0.00 35.27 2.29
1939 1985 6.719370 TGGTTAGCCTTTGAACTTGTATTCAT 59.281 34.615 0.00 0.00 35.67 2.57
2016 2062 4.457257 CAGGAAACAAGAATGGACTTCTCC 59.543 45.833 0.00 0.00 43.60 3.71
2066 2112 9.227777 GGTACTTTATTCCAGTACTTCAATGTT 57.772 33.333 9.49 0.00 44.21 2.71
2074 2120 8.547967 TTCCAGTACTTCAATGTTCAATCTAC 57.452 34.615 0.00 0.00 0.00 2.59
2075 2121 6.811665 TCCAGTACTTCAATGTTCAATCTACG 59.188 38.462 0.00 0.00 0.00 3.51
2076 2122 6.036083 CCAGTACTTCAATGTTCAATCTACGG 59.964 42.308 0.00 0.00 0.00 4.02
2077 2123 6.590292 CAGTACTTCAATGTTCAATCTACGGT 59.410 38.462 0.00 0.00 0.00 4.83
2078 2124 5.862924 ACTTCAATGTTCAATCTACGGTG 57.137 39.130 0.00 0.00 0.00 4.94
2079 2125 5.305585 ACTTCAATGTTCAATCTACGGTGT 58.694 37.500 0.00 0.00 0.00 4.16
2084 2130 9.438228 TTCAATGTTCAATCTACGGTGTAATTA 57.562 29.630 0.00 0.00 0.00 1.40
2091 2137 7.690228 TCAATCTACGGTGTAATTATTTGCAC 58.310 34.615 9.32 9.32 44.77 4.57
2119 2173 5.645929 TCTGTTATGTCTTGTGTGTTGTTGT 59.354 36.000 0.00 0.00 0.00 3.32
2149 2203 6.093495 TGCACAGTGCTCTTATGGTTTAATAC 59.907 38.462 25.83 0.00 45.31 1.89
2180 2234 2.767505 ACGAAGTTGCTTTCTACCAGG 58.232 47.619 0.00 0.00 37.78 4.45
2182 2236 2.737252 CGAAGTTGCTTTCTACCAGGAC 59.263 50.000 0.00 0.00 0.00 3.85
2210 2264 9.665264 CACTTTCAAGTTGATTTTAGTACTTCC 57.335 33.333 6.36 0.00 37.08 3.46
2228 2282 8.209584 AGTACTTCCGAGACTGTTGATACTATA 58.790 37.037 0.00 0.00 0.00 1.31
2300 2354 7.771183 TGGTTTCTTCAGGCAATTATAATGTC 58.229 34.615 0.00 0.00 0.00 3.06
2303 2357 8.897752 GTTTCTTCAGGCAATTATAATGTCTCT 58.102 33.333 0.00 0.00 28.19 3.10
2327 2381 7.014134 TCTGTTCTTAGAGATCTTGCATCTAGG 59.986 40.741 0.00 0.00 0.00 3.02
2345 2399 3.567478 AGGGAGGCATGATTTCTGTAC 57.433 47.619 0.00 0.00 0.00 2.90
2346 2400 2.846206 AGGGAGGCATGATTTCTGTACA 59.154 45.455 0.00 0.00 0.00 2.90
2350 2404 5.239525 GGGAGGCATGATTTCTGTACATAAC 59.760 44.000 0.00 0.00 0.00 1.89
2390 2444 8.967664 TCGTTATGCTTACTATTTTTATGGGT 57.032 30.769 0.00 0.00 0.00 4.51
2391 2445 9.048446 TCGTTATGCTTACTATTTTTATGGGTC 57.952 33.333 0.00 0.00 0.00 4.46
2392 2446 8.287503 CGTTATGCTTACTATTTTTATGGGTCC 58.712 37.037 0.00 0.00 0.00 4.46
2396 2450 6.053650 GCTTACTATTTTTATGGGTCCTCGT 58.946 40.000 0.00 0.00 0.00 4.18
2398 2452 7.876582 GCTTACTATTTTTATGGGTCCTCGTAT 59.123 37.037 0.00 0.00 0.00 3.06
2399 2453 9.774413 CTTACTATTTTTATGGGTCCTCGTATT 57.226 33.333 0.00 0.00 0.00 1.89
2476 2530 3.584586 CATCGATGAGAGGCTGTCC 57.415 57.895 21.02 0.00 0.00 4.02
2576 2630 3.057315 CCCTAGTGATGTTTGTTTGCTGG 60.057 47.826 0.00 0.00 0.00 4.85
2598 2652 1.771255 CCTGTGCCTTCCCTAGCTTAT 59.229 52.381 0.00 0.00 0.00 1.73
2599 2653 2.972713 CCTGTGCCTTCCCTAGCTTATA 59.027 50.000 0.00 0.00 0.00 0.98
2600 2654 3.244249 CCTGTGCCTTCCCTAGCTTATAC 60.244 52.174 0.00 0.00 0.00 1.47
2624 2678 5.408356 TCAACTAAAGTATCTCCTGTTCGC 58.592 41.667 0.00 0.00 0.00 4.70
2625 2679 4.388378 ACTAAAGTATCTCCTGTTCGCC 57.612 45.455 0.00 0.00 0.00 5.54
2685 2740 1.116308 TTGAGGTGTTCCGTCAGACA 58.884 50.000 0.41 0.00 39.05 3.41
2753 2808 1.910671 GGGTGGACTGGTATGGTGTTA 59.089 52.381 0.00 0.00 0.00 2.41
2779 2834 6.328641 GCATTTGCATCCTTCTGATCTATT 57.671 37.500 0.00 0.00 41.59 1.73
2780 2835 7.444629 GCATTTGCATCCTTCTGATCTATTA 57.555 36.000 0.00 0.00 41.59 0.98
2781 2836 7.303998 GCATTTGCATCCTTCTGATCTATTAC 58.696 38.462 0.00 0.00 41.59 1.89
2782 2837 7.574592 GCATTTGCATCCTTCTGATCTATTACC 60.575 40.741 0.00 0.00 41.59 2.85
2783 2838 6.753913 TTGCATCCTTCTGATCTATTACCT 57.246 37.500 0.00 0.00 0.00 3.08
2784 2839 6.352016 TGCATCCTTCTGATCTATTACCTC 57.648 41.667 0.00 0.00 0.00 3.85
2785 2840 6.080682 TGCATCCTTCTGATCTATTACCTCT 58.919 40.000 0.00 0.00 0.00 3.69
2786 2841 6.014755 TGCATCCTTCTGATCTATTACCTCTG 60.015 42.308 0.00 0.00 0.00 3.35
2787 2842 6.014669 GCATCCTTCTGATCTATTACCTCTGT 60.015 42.308 0.00 0.00 0.00 3.41
2788 2843 7.472663 GCATCCTTCTGATCTATTACCTCTGTT 60.473 40.741 0.00 0.00 0.00 3.16
2789 2844 7.589958 TCCTTCTGATCTATTACCTCTGTTC 57.410 40.000 0.00 0.00 0.00 3.18
2790 2845 6.551601 TCCTTCTGATCTATTACCTCTGTTCC 59.448 42.308 0.00 0.00 0.00 3.62
2791 2846 6.392625 TTCTGATCTATTACCTCTGTTCCG 57.607 41.667 0.00 0.00 0.00 4.30
2792 2847 5.691896 TCTGATCTATTACCTCTGTTCCGA 58.308 41.667 0.00 0.00 0.00 4.55
2793 2848 6.127101 TCTGATCTATTACCTCTGTTCCGAA 58.873 40.000 0.00 0.00 0.00 4.30
2794 2849 6.605995 TCTGATCTATTACCTCTGTTCCGAAA 59.394 38.462 0.00 0.00 0.00 3.46
2795 2850 7.287927 TCTGATCTATTACCTCTGTTCCGAAAT 59.712 37.037 0.00 0.00 0.00 2.17
2796 2851 8.473358 TGATCTATTACCTCTGTTCCGAAATA 57.527 34.615 0.00 0.00 0.00 1.40
2797 2852 9.090103 TGATCTATTACCTCTGTTCCGAAATAT 57.910 33.333 0.00 0.00 0.00 1.28
2803 2858 5.589192 ACCTCTGTTCCGAAATATAAGTCG 58.411 41.667 2.29 2.29 37.01 4.18
2804 2859 4.444720 CCTCTGTTCCGAAATATAAGTCGC 59.555 45.833 3.51 0.00 35.93 5.19
2805 2860 5.258456 TCTGTTCCGAAATATAAGTCGCT 57.742 39.130 3.51 0.00 35.93 4.93
2806 2861 5.041287 TCTGTTCCGAAATATAAGTCGCTG 58.959 41.667 3.51 0.00 35.93 5.18
2807 2862 4.116961 TGTTCCGAAATATAAGTCGCTGG 58.883 43.478 3.51 0.00 35.93 4.85
2808 2863 3.380479 TCCGAAATATAAGTCGCTGGG 57.620 47.619 3.51 0.00 35.93 4.45
2809 2864 2.036733 TCCGAAATATAAGTCGCTGGGG 59.963 50.000 3.51 0.00 35.93 4.96
2810 2865 2.413837 CGAAATATAAGTCGCTGGGGG 58.586 52.381 0.00 0.00 0.00 5.40
2811 2866 2.036733 CGAAATATAAGTCGCTGGGGGA 59.963 50.000 0.00 0.00 0.00 4.81
2812 2867 3.665190 GAAATATAAGTCGCTGGGGGAG 58.335 50.000 0.00 0.00 0.00 4.30
2813 2868 2.400467 ATATAAGTCGCTGGGGGAGT 57.600 50.000 0.00 0.00 0.00 3.85
2814 2869 2.170012 TATAAGTCGCTGGGGGAGTT 57.830 50.000 9.08 9.08 40.39 3.01
2815 2870 0.831307 ATAAGTCGCTGGGGGAGTTC 59.169 55.000 7.72 0.00 38.67 3.01
2816 2871 0.543410 TAAGTCGCTGGGGGAGTTCA 60.543 55.000 7.72 0.00 38.67 3.18
2817 2872 1.831652 AAGTCGCTGGGGGAGTTCAG 61.832 60.000 0.00 0.00 33.86 3.02
2818 2873 2.203788 TCGCTGGGGGAGTTCAGT 60.204 61.111 0.00 0.00 33.81 3.41
2819 2874 1.841556 TCGCTGGGGGAGTTCAGTT 60.842 57.895 0.00 0.00 33.81 3.16
2820 2875 1.073199 CGCTGGGGGAGTTCAGTTT 59.927 57.895 0.00 0.00 33.81 2.66
2821 2876 0.323629 CGCTGGGGGAGTTCAGTTTA 59.676 55.000 0.00 0.00 33.81 2.01
2822 2877 1.822506 GCTGGGGGAGTTCAGTTTAC 58.177 55.000 0.00 0.00 33.81 2.01
2823 2878 1.073284 GCTGGGGGAGTTCAGTTTACA 59.927 52.381 0.00 0.00 33.81 2.41
2824 2879 2.779506 CTGGGGGAGTTCAGTTTACAC 58.220 52.381 0.00 0.00 0.00 2.90
2825 2880 2.372172 CTGGGGGAGTTCAGTTTACACT 59.628 50.000 0.00 0.00 0.00 3.55
2826 2881 2.370849 TGGGGGAGTTCAGTTTACACTC 59.629 50.000 0.00 0.00 36.91 3.51
2830 2885 3.055209 GAGTTCAGTTTACACTCCCCC 57.945 52.381 0.00 0.00 32.26 5.40
2831 2886 2.370849 GAGTTCAGTTTACACTCCCCCA 59.629 50.000 0.00 0.00 32.26 4.96
2832 2887 2.781174 AGTTCAGTTTACACTCCCCCAA 59.219 45.455 0.00 0.00 0.00 4.12
2833 2888 2.882761 GTTCAGTTTACACTCCCCCAAC 59.117 50.000 0.00 0.00 0.00 3.77
2834 2889 1.071071 TCAGTTTACACTCCCCCAACG 59.929 52.381 0.00 0.00 0.00 4.10
2835 2890 1.071071 CAGTTTACACTCCCCCAACGA 59.929 52.381 0.00 0.00 0.00 3.85
2836 2891 1.071228 AGTTTACACTCCCCCAACGAC 59.929 52.381 0.00 0.00 0.00 4.34
2837 2892 1.071228 GTTTACACTCCCCCAACGACT 59.929 52.381 0.00 0.00 0.00 4.18
2838 2893 1.426751 TTACACTCCCCCAACGACTT 58.573 50.000 0.00 0.00 0.00 3.01
2839 2894 2.307496 TACACTCCCCCAACGACTTA 57.693 50.000 0.00 0.00 0.00 2.24
2840 2895 1.652947 ACACTCCCCCAACGACTTAT 58.347 50.000 0.00 0.00 0.00 1.73
2841 2896 2.823959 ACACTCCCCCAACGACTTATA 58.176 47.619 0.00 0.00 0.00 0.98
2842 2897 3.381335 ACACTCCCCCAACGACTTATAT 58.619 45.455 0.00 0.00 0.00 0.86
2843 2898 3.778629 ACACTCCCCCAACGACTTATATT 59.221 43.478 0.00 0.00 0.00 1.28
2844 2899 4.226620 ACACTCCCCCAACGACTTATATTT 59.773 41.667 0.00 0.00 0.00 1.40
2845 2900 5.426185 ACACTCCCCCAACGACTTATATTTA 59.574 40.000 0.00 0.00 0.00 1.40
2846 2901 6.100714 ACACTCCCCCAACGACTTATATTTAT 59.899 38.462 0.00 0.00 0.00 1.40
2847 2902 6.426937 CACTCCCCCAACGACTTATATTTATG 59.573 42.308 0.00 0.00 0.00 1.90
2848 2903 5.871834 TCCCCCAACGACTTATATTTATGG 58.128 41.667 0.00 0.00 0.00 2.74
2849 2904 5.607592 TCCCCCAACGACTTATATTTATGGA 59.392 40.000 0.00 0.00 0.00 3.41
2850 2905 6.101442 TCCCCCAACGACTTATATTTATGGAA 59.899 38.462 0.00 0.00 0.00 3.53
2851 2906 6.206048 CCCCCAACGACTTATATTTATGGAAC 59.794 42.308 0.00 0.00 0.00 3.62
2852 2907 6.073440 CCCCAACGACTTATATTTATGGAACG 60.073 42.308 0.00 0.00 0.00 3.95
2853 2908 6.073440 CCCAACGACTTATATTTATGGAACGG 60.073 42.308 0.00 0.00 0.00 4.44
2854 2909 6.702723 CCAACGACTTATATTTATGGAACGGA 59.297 38.462 0.00 0.00 0.00 4.69
2855 2910 7.095774 CCAACGACTTATATTTATGGAACGGAG 60.096 40.741 0.00 0.00 0.00 4.63
2856 2911 6.453092 ACGACTTATATTTATGGAACGGAGG 58.547 40.000 0.00 0.00 0.00 4.30
2857 2912 5.867716 CGACTTATATTTATGGAACGGAGGG 59.132 44.000 0.00 0.00 0.00 4.30
2858 2913 6.294899 CGACTTATATTTATGGAACGGAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
2859 2914 7.005709 ACTTATATTTATGGAACGGAGGGAG 57.994 40.000 0.00 0.00 0.00 4.30
2860 2915 6.557633 ACTTATATTTATGGAACGGAGGGAGT 59.442 38.462 0.00 0.00 0.00 3.85
2861 2916 7.731688 ACTTATATTTATGGAACGGAGGGAGTA 59.268 37.037 0.00 0.00 0.00 2.59
2862 2917 4.684484 ATTTATGGAACGGAGGGAGTAC 57.316 45.455 0.00 0.00 0.00 2.73
2886 2941 6.881602 ACCTGTTTCTGCAAAAATTGGTTAAA 59.118 30.769 6.57 0.00 0.00 1.52
2887 2942 7.391833 ACCTGTTTCTGCAAAAATTGGTTAAAA 59.608 29.630 6.57 0.00 0.00 1.52
2913 2968 8.584157 AGTTATTAATGTGCAATTCCTTTGTGA 58.416 29.630 0.00 0.00 37.65 3.58
2914 2969 9.369904 GTTATTAATGTGCAATTCCTTTGTGAT 57.630 29.630 0.00 0.00 37.65 3.06
3071 3126 0.468226 TCTGTGGGTCAGACACAACC 59.532 55.000 7.20 0.00 46.98 3.77
3077 3132 0.317479 GGTCAGACACAACCGCTACT 59.683 55.000 2.17 0.00 0.00 2.57
3128 3183 3.672295 GAGAGAAGGCCAGCCCACG 62.672 68.421 5.01 0.00 36.58 4.94
3274 3335 5.164954 GTCTAAGCTGTTACTTCTGTCTGG 58.835 45.833 0.00 0.00 0.00 3.86
3317 3378 7.900782 ACAAACTTATATGCTTTGTACTCGT 57.099 32.000 12.97 0.00 36.56 4.18
3318 3379 8.991243 ACAAACTTATATGCTTTGTACTCGTA 57.009 30.769 12.97 0.00 36.56 3.43
3366 3427 4.394610 TGCTCTTGCGCTTTTGTGATATTA 59.605 37.500 9.73 0.00 43.34 0.98
3399 3460 3.250040 ACTGCGAGTGATGTTGGTTTTAC 59.750 43.478 0.00 0.00 0.00 2.01
3400 3461 3.472652 TGCGAGTGATGTTGGTTTTACT 58.527 40.909 0.00 0.00 0.00 2.24
3401 3462 4.633175 TGCGAGTGATGTTGGTTTTACTA 58.367 39.130 0.00 0.00 0.00 1.82
3402 3463 5.242434 TGCGAGTGATGTTGGTTTTACTAT 58.758 37.500 0.00 0.00 0.00 2.12
3403 3464 6.399743 TGCGAGTGATGTTGGTTTTACTATA 58.600 36.000 0.00 0.00 0.00 1.31
3404 3465 7.045416 TGCGAGTGATGTTGGTTTTACTATAT 58.955 34.615 0.00 0.00 0.00 0.86
3450 3570 3.943381 ACATCTGCATTGACGATTCATGT 59.057 39.130 3.97 0.00 0.00 3.21
3458 5054 6.968335 TGCATTGACGATTCATGTATCAAAAG 59.032 34.615 12.20 2.90 33.29 2.27
3459 5055 6.968904 GCATTGACGATTCATGTATCAAAAGT 59.031 34.615 12.20 2.42 33.29 2.66
3528 5130 9.236691 CAAAATCATTACACACATATAACCTGC 57.763 33.333 0.00 0.00 0.00 4.85
3539 5141 6.649141 ACACATATAACCTGCCATATAACACG 59.351 38.462 0.00 0.00 0.00 4.49
3541 5143 6.872020 ACATATAACCTGCCATATAACACGAC 59.128 38.462 0.00 0.00 0.00 4.34
3549 5151 1.858458 CATATAACACGACAGGCACGG 59.142 52.381 0.00 0.00 34.93 4.94
3556 5158 1.153568 CGACAGGCACGGATGATGT 60.154 57.895 0.00 0.00 31.89 3.06
3557 5159 0.740868 CGACAGGCACGGATGATGTT 60.741 55.000 0.00 0.00 30.02 2.71
3560 5162 1.277842 ACAGGCACGGATGATGTTGTA 59.722 47.619 0.00 0.00 0.00 2.41
3563 5165 1.933853 GGCACGGATGATGTTGTAGTC 59.066 52.381 0.00 0.00 0.00 2.59
3564 5166 1.933853 GCACGGATGATGTTGTAGTCC 59.066 52.381 0.00 0.00 0.00 3.85
3565 5167 2.676750 GCACGGATGATGTTGTAGTCCA 60.677 50.000 0.00 0.00 0.00 4.02
3566 5168 3.797039 CACGGATGATGTTGTAGTCCAT 58.203 45.455 0.00 0.00 0.00 3.41
3567 5169 4.191544 CACGGATGATGTTGTAGTCCATT 58.808 43.478 0.00 0.00 0.00 3.16
3568 5170 4.635765 CACGGATGATGTTGTAGTCCATTT 59.364 41.667 0.00 0.00 0.00 2.32
3569 5171 4.635765 ACGGATGATGTTGTAGTCCATTTG 59.364 41.667 0.00 0.00 0.00 2.32
3572 5174 6.128035 CGGATGATGTTGTAGTCCATTTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
3573 5175 7.029563 GGATGATGTTGTAGTCCATTTGAAAC 58.970 38.462 0.00 0.00 0.00 2.78
3575 5177 7.523293 TGATGTTGTAGTCCATTTGAAACAT 57.477 32.000 0.00 0.00 38.95 2.71
3576 5178 7.592938 TGATGTTGTAGTCCATTTGAAACATC 58.407 34.615 15.27 15.27 46.37 3.06
3577 5179 7.448161 TGATGTTGTAGTCCATTTGAAACATCT 59.552 33.333 20.14 0.00 46.34 2.90
3578 5180 8.862325 ATGTTGTAGTCCATTTGAAACATCTA 57.138 30.769 0.00 0.00 32.81 1.98
3579 5181 8.684386 TGTTGTAGTCCATTTGAAACATCTAA 57.316 30.769 0.00 0.00 0.00 2.10
3580 5182 9.126151 TGTTGTAGTCCATTTGAAACATCTAAA 57.874 29.630 0.00 0.00 0.00 1.85
3581 5183 9.959749 GTTGTAGTCCATTTGAAACATCTAAAA 57.040 29.630 0.00 0.00 0.00 1.52
3586 5188 9.136323 AGTCCATTTGAAACATCTAAAAAGACT 57.864 29.630 0.00 0.00 31.00 3.24
3587 5189 9.750125 GTCCATTTGAAACATCTAAAAAGACTT 57.250 29.630 0.00 0.00 0.00 3.01
3601 5203 9.760077 TCTAAAAAGACTTATATTTAGGAGCGG 57.240 33.333 13.94 0.00 36.48 5.52
3602 5204 9.760077 CTAAAAAGACTTATATTTAGGAGCGGA 57.240 33.333 8.91 0.00 33.69 5.54
3603 5205 8.664211 AAAAAGACTTATATTTAGGAGCGGAG 57.336 34.615 0.00 0.00 0.00 4.63
3604 5206 5.986501 AGACTTATATTTAGGAGCGGAGG 57.013 43.478 0.00 0.00 0.00 4.30
3605 5207 4.773149 AGACTTATATTTAGGAGCGGAGGG 59.227 45.833 0.00 0.00 0.00 4.30
3606 5208 4.748701 ACTTATATTTAGGAGCGGAGGGA 58.251 43.478 0.00 0.00 0.00 4.20
3607 5209 4.773149 ACTTATATTTAGGAGCGGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
3608 5210 2.769602 TATTTAGGAGCGGAGGGAGT 57.230 50.000 0.00 0.00 0.00 3.85
3609 5211 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.000 0.00 0.00 0.00 2.59
3626 5228 6.739664 AGGGAGTAGTACAGTACACCTTTAT 58.260 40.000 13.37 0.00 34.87 1.40
3816 5435 3.384532 GTCGGCCCCGGACTTGTA 61.385 66.667 0.73 0.00 40.25 2.41
3898 5517 4.111016 TGCGCTGTCGGGTCGTAG 62.111 66.667 9.73 0.00 35.95 3.51
3915 5534 2.160219 CGTAGTTGAACACTGCATGCAT 59.840 45.455 22.97 5.92 37.98 3.96
3917 5536 3.837213 AGTTGAACACTGCATGCATAC 57.163 42.857 22.97 11.21 32.83 2.39
3933 5555 2.489971 CATACGTACCCAAATCCGCAT 58.510 47.619 0.00 0.00 0.00 4.73
3945 5567 1.386525 ATCCGCATGCATCAACCACC 61.387 55.000 19.57 0.00 0.00 4.61
3961 5583 2.303600 ACCACCAATTTTCATGCAGCAT 59.696 40.909 0.52 0.52 0.00 3.79
3962 5584 3.514706 ACCACCAATTTTCATGCAGCATA 59.485 39.130 7.82 0.00 0.00 3.14
3964 5586 3.548668 CACCAATTTTCATGCAGCATACG 59.451 43.478 7.82 0.00 0.00 3.06
3966 5588 4.397730 ACCAATTTTCATGCAGCATACGTA 59.602 37.500 7.82 0.00 0.00 3.57
3989 5611 5.470368 AGATCCATGTATGTATGCACGTAC 58.530 41.667 0.00 0.00 44.29 3.67
3990 5612 3.985008 TCCATGTATGTATGCACGTACC 58.015 45.455 0.00 0.00 43.68 3.34
3991 5613 3.385111 TCCATGTATGTATGCACGTACCA 59.615 43.478 0.00 0.00 43.68 3.25
3992 5614 4.039852 TCCATGTATGTATGCACGTACCAT 59.960 41.667 0.00 6.20 43.68 3.55
3993 5615 4.388773 CCATGTATGTATGCACGTACCATC 59.611 45.833 4.36 0.00 43.68 3.51
3994 5616 4.929819 TGTATGTATGCACGTACCATCT 57.070 40.909 4.36 0.00 43.68 2.90
3995 5617 4.866921 TGTATGTATGCACGTACCATCTC 58.133 43.478 4.36 1.89 43.68 2.75
3997 5619 3.436700 TGTATGCACGTACCATCTCTG 57.563 47.619 4.36 0.00 0.00 3.35
4014 5636 5.705609 TCTCTGGGTTCAAATAAAACTGC 57.294 39.130 0.00 0.00 0.00 4.40
4020 5642 7.065204 TCTGGGTTCAAATAAAACTGCAAAAAC 59.935 33.333 0.00 0.00 0.00 2.43
4023 5645 7.855409 GGGTTCAAATAAAACTGCAAAAACATC 59.145 33.333 0.00 0.00 0.00 3.06
4028 5650 9.566624 CAAATAAAACTGCAAAAACATCTTACG 57.433 29.630 0.00 0.00 0.00 3.18
4038 5670 7.968956 TGCAAAAACATCTTACGTTTAGAAACA 59.031 29.630 0.00 0.00 38.81 2.83
4171 5803 2.696125 ACCCCCGCATGGAGGAAT 60.696 61.111 0.00 0.00 37.49 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.638239 GTGCTTGTTATCTGGAATATTCAAAAA 57.362 29.630 17.07 3.40 0.00 1.94
12 13 8.801299 TGTGCTTGTTATCTGGAATATTCAAAA 58.199 29.630 17.07 0.00 0.00 2.44
23 24 2.301346 GGGGATGTGCTTGTTATCTGG 58.699 52.381 0.00 0.00 0.00 3.86
33 34 2.564062 CTCATTGTTTTGGGGATGTGCT 59.436 45.455 0.00 0.00 0.00 4.40
52 53 8.574196 TGTGCTGTTTCTAAAAATAAAAGCTC 57.426 30.769 0.00 0.00 0.00 4.09
71 72 9.896263 TGCATATGTATATTGTTTTATGTGCTG 57.104 29.630 4.29 0.00 0.00 4.41
83 84 8.326680 TGTGTTCTCCATGCATATGTATATTG 57.673 34.615 5.94 0.00 32.21 1.90
84 85 8.159447 ACTGTGTTCTCCATGCATATGTATATT 58.841 33.333 5.94 0.00 32.21 1.28
86 87 7.066307 ACTGTGTTCTCCATGCATATGTATA 57.934 36.000 5.94 0.00 32.21 1.47
87 88 5.933617 ACTGTGTTCTCCATGCATATGTAT 58.066 37.500 0.00 1.99 32.21 2.29
88 89 5.357742 ACTGTGTTCTCCATGCATATGTA 57.642 39.130 0.00 0.00 32.21 2.29
89 90 4.226427 ACTGTGTTCTCCATGCATATGT 57.774 40.909 0.00 0.00 32.21 2.29
90 91 6.872628 AATACTGTGTTCTCCATGCATATG 57.127 37.500 0.00 0.00 0.00 1.78
91 92 7.285566 AGAAATACTGTGTTCTCCATGCATAT 58.714 34.615 0.00 0.00 27.52 1.78
92 93 6.653020 AGAAATACTGTGTTCTCCATGCATA 58.347 36.000 0.00 0.00 27.52 3.14
136 138 9.908152 GGTATTTGTTGCATCTTAACTACTTTT 57.092 29.630 0.00 0.00 0.00 2.27
175 177 6.836007 AGAAAATGGAATACCTTTCCCTGATC 59.164 38.462 2.11 0.00 37.79 2.92
177 179 6.152638 AGAAAATGGAATACCTTTCCCTGA 57.847 37.500 2.11 0.00 37.79 3.86
178 180 5.066505 CGAGAAAATGGAATACCTTTCCCTG 59.933 44.000 2.11 0.00 37.79 4.45
187 189 4.965119 AGGTTGCGAGAAAATGGAATAC 57.035 40.909 0.00 0.00 0.00 1.89
228 230 3.908213 ACTCACACGTTTTGCAAACTTT 58.092 36.364 12.39 0.00 0.00 2.66
235 237 5.407387 TCCTCTAATTACTCACACGTTTTGC 59.593 40.000 0.00 0.00 0.00 3.68
244 246 8.474710 TGGTATACCTTCCTCTAATTACTCAC 57.525 38.462 22.41 0.00 36.82 3.51
362 366 7.608761 TGGCGTTTTATAGTTATTCTTCCAAGT 59.391 33.333 0.00 0.00 0.00 3.16
382 386 7.096230 CGAGATTTTTGAAATTTTAGTGGCGTT 60.096 33.333 0.00 0.00 0.00 4.84
386 390 8.810652 TTCCGAGATTTTTGAAATTTTAGTGG 57.189 30.769 0.00 0.00 0.00 4.00
459 464 9.862585 ACGAAATTTCAAATTGATTTAACAAGC 57.137 25.926 17.99 0.00 33.22 4.01
494 499 9.131791 GGCATTTCTAACTTCCATTAAATAGGA 57.868 33.333 0.00 0.00 0.00 2.94
498 503 8.366359 AGTGGCATTTCTAACTTCCATTAAAT 57.634 30.769 0.00 0.00 0.00 1.40
519 524 6.294176 CCTCAAGTCATAAAAAGTGGAAGTGG 60.294 42.308 0.00 0.00 0.00 4.00
522 527 7.693969 ATCCTCAAGTCATAAAAAGTGGAAG 57.306 36.000 0.00 0.00 0.00 3.46
528 533 8.340618 TCTGGAAATCCTCAAGTCATAAAAAG 57.659 34.615 0.44 0.00 36.82 2.27
531 537 9.973661 TTAATCTGGAAATCCTCAAGTCATAAA 57.026 29.630 0.44 0.00 36.82 1.40
538 544 8.893727 ACGTAATTTAATCTGGAAATCCTCAAG 58.106 33.333 0.44 0.00 36.82 3.02
540 546 8.801882 AACGTAATTTAATCTGGAAATCCTCA 57.198 30.769 0.44 0.00 36.82 3.86
609 644 3.171828 ATCCGTGTGTGTTCGGCCA 62.172 57.895 2.24 0.00 45.44 5.36
629 664 2.844839 ATGCTACGGGGAGGCTCC 60.845 66.667 25.80 25.80 35.23 4.70
631 666 1.460305 ATGATGCTACGGGGAGGCT 60.460 57.895 0.00 0.00 0.00 4.58
632 667 1.004440 GATGATGCTACGGGGAGGC 60.004 63.158 0.00 0.00 0.00 4.70
633 668 0.979665 ATGATGATGCTACGGGGAGG 59.020 55.000 0.00 0.00 0.00 4.30
635 670 0.686789 CCATGATGATGCTACGGGGA 59.313 55.000 0.00 0.00 0.00 4.81
636 671 0.321919 CCCATGATGATGCTACGGGG 60.322 60.000 0.00 0.00 0.00 5.73
640 675 0.250467 ACGGCCCATGATGATGCTAC 60.250 55.000 0.00 0.00 0.00 3.58
649 684 2.662596 GTCACAGACGGCCCATGA 59.337 61.111 0.00 0.00 0.00 3.07
659 694 1.334160 TTAGGTTGAGCCGTCACAGA 58.666 50.000 0.00 0.00 43.70 3.41
668 703 2.485657 GGCTGGTCCTATTAGGTTGAGC 60.486 54.545 9.57 13.20 36.53 4.26
672 707 1.129058 CGGGCTGGTCCTATTAGGTT 58.871 55.000 9.57 0.00 36.53 3.50
884 919 4.779733 GGGGAGAGGGGTCGCTGA 62.780 72.222 0.00 0.00 0.00 4.26
1040 1076 3.628487 ACCGAATTCGTGAAGGACAAAAA 59.372 39.130 25.10 0.00 37.74 1.94
1073 1109 4.760047 GACGACCACAGCCGCCAT 62.760 66.667 0.00 0.00 0.00 4.40
1205 1241 2.025981 AGATGCTGCCTAAATCACACCA 60.026 45.455 0.00 0.00 0.00 4.17
1242 1278 3.600388 ACTATCTTTTTGCAGGGACGAG 58.400 45.455 0.00 0.00 0.00 4.18
1334 1370 0.466922 AGCTGCTTGCCACAAACTCT 60.467 50.000 0.00 0.00 44.23 3.24
1365 1401 5.839621 TGCTGTTAATCCTAGATAACGACC 58.160 41.667 0.00 0.00 35.30 4.79
1368 1404 6.366332 GGTGATGCTGTTAATCCTAGATAACG 59.634 42.308 0.00 0.00 35.30 3.18
1369 1405 7.217200 TGGTGATGCTGTTAATCCTAGATAAC 58.783 38.462 0.00 0.00 33.59 1.89
1385 1431 5.294306 CACTTGTATACGAAATGGTGATGCT 59.706 40.000 4.84 0.00 0.00 3.79
1386 1432 5.501715 CACTTGTATACGAAATGGTGATGC 58.498 41.667 4.84 0.00 0.00 3.91
1454 1500 5.047660 GGACATCCACTTAGAGCTATACCAG 60.048 48.000 0.00 0.00 35.64 4.00
1460 1506 4.160439 CACAAGGACATCCACTTAGAGCTA 59.840 45.833 0.00 0.00 38.89 3.32
1462 1508 3.265791 CACAAGGACATCCACTTAGAGC 58.734 50.000 0.00 0.00 38.89 4.09
1466 1512 1.985159 AGGCACAAGGACATCCACTTA 59.015 47.619 0.00 0.00 38.89 2.24
1476 1522 3.402186 CTTGTCACAGGCACAAGGA 57.598 52.632 7.38 0.00 44.79 3.36
1491 1537 9.764870 CAATCACATATGAACTTCTAACACTTG 57.235 33.333 10.38 0.00 38.69 3.16
1537 1583 3.081804 ACAGCAACACCAAGCCTATAAC 58.918 45.455 0.00 0.00 0.00 1.89
1540 1586 1.538047 CACAGCAACACCAAGCCTAT 58.462 50.000 0.00 0.00 0.00 2.57
1544 1590 1.299620 CTGCACAGCAACACCAAGC 60.300 57.895 0.00 0.00 38.41 4.01
1547 1593 0.173029 CAAACTGCACAGCAACACCA 59.827 50.000 0.00 0.00 38.41 4.17
1548 1594 0.173255 ACAAACTGCACAGCAACACC 59.827 50.000 0.00 0.00 38.41 4.16
1549 1595 1.270971 CACAAACTGCACAGCAACAC 58.729 50.000 0.00 0.00 38.41 3.32
1550 1596 0.887247 ACACAAACTGCACAGCAACA 59.113 45.000 0.00 0.00 38.41 3.33
1559 1605 0.317020 GCGGAGTTGACACAAACTGC 60.317 55.000 0.00 0.00 43.01 4.40
1561 1607 1.940613 GAAGCGGAGTTGACACAAACT 59.059 47.619 0.00 0.00 43.08 2.66
1605 1651 5.009010 ACAGAAACCACATAGCAAAGAACAG 59.991 40.000 0.00 0.00 0.00 3.16
1765 1811 1.610522 CCTCTGCTTCCACCAAAAGTG 59.389 52.381 0.00 0.00 46.83 3.16
1806 1852 9.760660 GTACTGCATAAGTATTCAAAAGAACAG 57.239 33.333 0.00 0.00 43.30 3.16
1822 1868 5.582269 GCTCAGACTCAAATGTACTGCATAA 59.418 40.000 0.00 0.00 36.67 1.90
1932 1978 8.388484 AGTGGATAGCTCAAATGAATGAATAC 57.612 34.615 0.00 0.00 0.00 1.89
1935 1981 6.317140 GTGAGTGGATAGCTCAAATGAATGAA 59.683 38.462 0.00 0.00 43.57 2.57
1939 1985 5.426689 AGTGAGTGGATAGCTCAAATGAA 57.573 39.130 0.00 0.00 43.57 2.57
2016 2062 0.747644 TCAGTGGTTGTGTGTGGCAG 60.748 55.000 0.00 0.00 0.00 4.85
2051 2097 6.036083 CCGTAGATTGAACATTGAAGTACTGG 59.964 42.308 0.00 0.00 0.00 4.00
2058 2104 7.915293 ATTACACCGTAGATTGAACATTGAA 57.085 32.000 0.00 0.00 0.00 2.69
2064 2110 8.178964 TGCAAATAATTACACCGTAGATTGAAC 58.821 33.333 0.00 0.00 0.00 3.18
2066 2112 7.334671 TGTGCAAATAATTACACCGTAGATTGA 59.665 33.333 0.00 0.00 32.74 2.57
2071 2117 8.181573 AGAATTGTGCAAATAATTACACCGTAG 58.818 33.333 0.00 0.00 32.74 3.51
2073 2119 6.806249 CAGAATTGTGCAAATAATTACACCGT 59.194 34.615 0.00 0.00 32.74 4.83
2074 2120 6.806249 ACAGAATTGTGCAAATAATTACACCG 59.194 34.615 1.83 0.00 35.83 4.94
2075 2121 8.532977 AACAGAATTGTGCAAATAATTACACC 57.467 30.769 1.83 0.00 37.67 4.16
2084 2130 7.383029 CACAAGACATAACAGAATTGTGCAAAT 59.617 33.333 1.83 0.00 40.49 2.32
2091 2137 7.195646 ACAACACACAAGACATAACAGAATTG 58.804 34.615 0.00 0.00 0.00 2.32
2149 2203 3.810373 AGCAACTTCGTATTCAAAAGCG 58.190 40.909 0.00 0.00 0.00 4.68
2180 2234 9.865484 GTACTAAAATCAACTTGAAAGTGAGTC 57.135 33.333 0.00 0.00 39.66 3.36
2210 2264 9.828852 GTAATTCCTATAGTATCAACAGTCTCG 57.171 37.037 0.00 0.00 0.00 4.04
2228 2282 8.982723 TCTCTAAGCAACTTCTATGTAATTCCT 58.017 33.333 0.00 0.00 0.00 3.36
2300 2354 6.808829 AGATGCAAGATCTCTAAGAACAGAG 58.191 40.000 0.00 0.00 42.96 3.35
2303 2357 6.041409 CCCTAGATGCAAGATCTCTAAGAACA 59.959 42.308 0.00 0.00 0.00 3.18
2313 2367 1.696336 TGCCTCCCTAGATGCAAGATC 59.304 52.381 0.00 0.00 40.20 2.75
2327 2381 6.017605 CAGTTATGTACAGAAATCATGCCTCC 60.018 42.308 4.14 0.00 0.00 4.30
2369 2423 7.876068 CGAGGACCCATAAAAATAGTAAGCATA 59.124 37.037 0.00 0.00 0.00 3.14
2576 2630 2.592308 CTAGGGAAGGCACAGGGC 59.408 66.667 0.00 0.00 43.74 5.19
2598 2652 7.627939 GCGAACAGGAGATACTTTAGTTGAGTA 60.628 40.741 0.00 0.00 34.38 2.59
2599 2653 6.622549 CGAACAGGAGATACTTTAGTTGAGT 58.377 40.000 0.00 0.00 0.00 3.41
2600 2654 5.517054 GCGAACAGGAGATACTTTAGTTGAG 59.483 44.000 0.00 0.00 0.00 3.02
2768 2823 6.127101 TCGGAACAGAGGTAATAGATCAGAA 58.873 40.000 0.00 0.00 0.00 3.02
2779 2834 6.732154 CGACTTATATTTCGGAACAGAGGTA 58.268 40.000 0.00 0.00 0.00 3.08
2780 2835 5.589192 CGACTTATATTTCGGAACAGAGGT 58.411 41.667 0.00 0.00 0.00 3.85
2781 2836 4.444720 GCGACTTATATTTCGGAACAGAGG 59.555 45.833 5.84 0.00 35.73 3.69
2782 2837 5.174035 CAGCGACTTATATTTCGGAACAGAG 59.826 44.000 5.84 0.00 35.73 3.35
2783 2838 5.041287 CAGCGACTTATATTTCGGAACAGA 58.959 41.667 5.84 0.00 35.73 3.41
2784 2839 4.209288 CCAGCGACTTATATTTCGGAACAG 59.791 45.833 5.84 0.00 35.73 3.16
2785 2840 4.116961 CCAGCGACTTATATTTCGGAACA 58.883 43.478 5.84 0.00 35.73 3.18
2786 2841 3.493503 CCCAGCGACTTATATTTCGGAAC 59.506 47.826 5.84 0.00 35.73 3.62
2787 2842 3.493699 CCCCAGCGACTTATATTTCGGAA 60.494 47.826 5.84 0.00 35.73 4.30
2788 2843 2.036733 CCCCAGCGACTTATATTTCGGA 59.963 50.000 5.84 0.00 35.73 4.55
2789 2844 2.413837 CCCCAGCGACTTATATTTCGG 58.586 52.381 5.84 0.00 35.73 4.30
2790 2845 2.036733 TCCCCCAGCGACTTATATTTCG 59.963 50.000 0.00 0.25 38.31 3.46
2791 2846 3.071167 ACTCCCCCAGCGACTTATATTTC 59.929 47.826 0.00 0.00 0.00 2.17
2792 2847 3.046374 ACTCCCCCAGCGACTTATATTT 58.954 45.455 0.00 0.00 0.00 1.40
2793 2848 2.690840 ACTCCCCCAGCGACTTATATT 58.309 47.619 0.00 0.00 0.00 1.28
2794 2849 2.400467 ACTCCCCCAGCGACTTATAT 57.600 50.000 0.00 0.00 0.00 0.86
2795 2850 2.037144 GAACTCCCCCAGCGACTTATA 58.963 52.381 0.00 0.00 0.00 0.98
2796 2851 0.831307 GAACTCCCCCAGCGACTTAT 59.169 55.000 0.00 0.00 0.00 1.73
2797 2852 0.543410 TGAACTCCCCCAGCGACTTA 60.543 55.000 0.00 0.00 0.00 2.24
2798 2853 1.831652 CTGAACTCCCCCAGCGACTT 61.832 60.000 0.00 0.00 0.00 3.01
2799 2854 2.203788 TGAACTCCCCCAGCGACT 60.204 61.111 0.00 0.00 0.00 4.18
2800 2855 2.113243 AACTGAACTCCCCCAGCGAC 62.113 60.000 0.00 0.00 33.90 5.19
2801 2856 1.415672 AAACTGAACTCCCCCAGCGA 61.416 55.000 0.00 0.00 33.90 4.93
2802 2857 0.323629 TAAACTGAACTCCCCCAGCG 59.676 55.000 0.00 0.00 33.90 5.18
2803 2858 1.073284 TGTAAACTGAACTCCCCCAGC 59.927 52.381 0.00 0.00 33.90 4.85
2804 2859 2.372172 AGTGTAAACTGAACTCCCCCAG 59.628 50.000 0.00 0.00 36.53 4.45
2805 2860 2.370849 GAGTGTAAACTGAACTCCCCCA 59.629 50.000 0.00 0.00 35.36 4.96
2806 2861 3.055209 GAGTGTAAACTGAACTCCCCC 57.945 52.381 0.00 0.00 35.36 5.40
2810 2865 2.370849 TGGGGGAGTGTAAACTGAACTC 59.629 50.000 0.00 0.00 39.70 3.01
2811 2866 2.414612 TGGGGGAGTGTAAACTGAACT 58.585 47.619 0.00 0.00 0.00 3.01
2812 2867 2.882761 GTTGGGGGAGTGTAAACTGAAC 59.117 50.000 0.00 0.00 0.00 3.18
2813 2868 2.485835 CGTTGGGGGAGTGTAAACTGAA 60.486 50.000 0.00 0.00 0.00 3.02
2814 2869 1.071071 CGTTGGGGGAGTGTAAACTGA 59.929 52.381 0.00 0.00 0.00 3.41
2815 2870 1.071071 TCGTTGGGGGAGTGTAAACTG 59.929 52.381 0.00 0.00 0.00 3.16
2816 2871 1.071228 GTCGTTGGGGGAGTGTAAACT 59.929 52.381 0.00 0.00 0.00 2.66
2817 2872 1.071228 AGTCGTTGGGGGAGTGTAAAC 59.929 52.381 0.00 0.00 0.00 2.01
2818 2873 1.426751 AGTCGTTGGGGGAGTGTAAA 58.573 50.000 0.00 0.00 0.00 2.01
2819 2874 1.426751 AAGTCGTTGGGGGAGTGTAA 58.573 50.000 0.00 0.00 0.00 2.41
2820 2875 2.307496 TAAGTCGTTGGGGGAGTGTA 57.693 50.000 0.00 0.00 0.00 2.90
2821 2876 1.652947 ATAAGTCGTTGGGGGAGTGT 58.347 50.000 0.00 0.00 0.00 3.55
2822 2877 4.417426 AATATAAGTCGTTGGGGGAGTG 57.583 45.455 0.00 0.00 0.00 3.51
2823 2878 6.465321 CCATAAATATAAGTCGTTGGGGGAGT 60.465 42.308 0.00 0.00 0.00 3.85
2824 2879 5.938125 CCATAAATATAAGTCGTTGGGGGAG 59.062 44.000 0.00 0.00 0.00 4.30
2825 2880 5.607592 TCCATAAATATAAGTCGTTGGGGGA 59.392 40.000 0.00 0.00 0.00 4.81
2826 2881 5.871834 TCCATAAATATAAGTCGTTGGGGG 58.128 41.667 0.00 0.00 0.00 5.40
2827 2882 6.073440 CGTTCCATAAATATAAGTCGTTGGGG 60.073 42.308 0.00 0.00 0.00 4.96
2828 2883 6.073440 CCGTTCCATAAATATAAGTCGTTGGG 60.073 42.308 0.00 0.00 0.00 4.12
2829 2884 6.702723 TCCGTTCCATAAATATAAGTCGTTGG 59.297 38.462 0.00 0.00 0.00 3.77
2830 2885 7.095774 CCTCCGTTCCATAAATATAAGTCGTTG 60.096 40.741 0.00 0.00 0.00 4.10
2831 2886 6.927381 CCTCCGTTCCATAAATATAAGTCGTT 59.073 38.462 0.00 0.00 0.00 3.85
2832 2887 6.453092 CCTCCGTTCCATAAATATAAGTCGT 58.547 40.000 0.00 0.00 0.00 4.34
2833 2888 5.867716 CCCTCCGTTCCATAAATATAAGTCG 59.132 44.000 0.00 0.00 0.00 4.18
2834 2889 7.001099 TCCCTCCGTTCCATAAATATAAGTC 57.999 40.000 0.00 0.00 0.00 3.01
2835 2890 6.557633 ACTCCCTCCGTTCCATAAATATAAGT 59.442 38.462 0.00 0.00 0.00 2.24
2836 2891 7.005709 ACTCCCTCCGTTCCATAAATATAAG 57.994 40.000 0.00 0.00 0.00 1.73
2837 2892 7.038799 GGTACTCCCTCCGTTCCATAAATATAA 60.039 40.741 0.00 0.00 0.00 0.98
2838 2893 6.438425 GGTACTCCCTCCGTTCCATAAATATA 59.562 42.308 0.00 0.00 0.00 0.86
2839 2894 5.247792 GGTACTCCCTCCGTTCCATAAATAT 59.752 44.000 0.00 0.00 0.00 1.28
2840 2895 4.590222 GGTACTCCCTCCGTTCCATAAATA 59.410 45.833 0.00 0.00 0.00 1.40
2841 2896 3.390311 GGTACTCCCTCCGTTCCATAAAT 59.610 47.826 0.00 0.00 0.00 1.40
2842 2897 2.767960 GGTACTCCCTCCGTTCCATAAA 59.232 50.000 0.00 0.00 0.00 1.40
2843 2898 2.023695 AGGTACTCCCTCCGTTCCATAA 60.024 50.000 0.00 0.00 40.71 1.90
2844 2899 1.572415 AGGTACTCCCTCCGTTCCATA 59.428 52.381 0.00 0.00 40.71 2.74
2845 2900 0.338814 AGGTACTCCCTCCGTTCCAT 59.661 55.000 0.00 0.00 40.71 3.41
2846 2901 0.613853 CAGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 43.86 3.53
2847 2902 0.614134 ACAGGTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 43.86 3.62
2848 2903 1.264295 AACAGGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 43.86 3.95
2849 2904 1.622312 GAAACAGGTACTCCCTCCGTT 59.378 52.381 0.00 0.00 43.86 4.44
2850 2905 1.203149 AGAAACAGGTACTCCCTCCGT 60.203 52.381 0.00 0.00 43.86 4.69
2851 2906 1.204941 CAGAAACAGGTACTCCCTCCG 59.795 57.143 0.00 0.00 43.86 4.63
2852 2907 1.066071 GCAGAAACAGGTACTCCCTCC 60.066 57.143 0.00 0.00 43.86 4.30
2853 2908 1.623811 TGCAGAAACAGGTACTCCCTC 59.376 52.381 0.00 0.00 43.86 4.30
2855 2910 2.561478 TTGCAGAAACAGGTACTCCC 57.439 50.000 0.00 0.00 34.60 4.30
2856 2911 4.911514 TTTTTGCAGAAACAGGTACTCC 57.088 40.909 0.00 0.00 34.60 3.85
2857 2912 5.691754 CCAATTTTTGCAGAAACAGGTACTC 59.308 40.000 4.29 0.00 34.60 2.59
2858 2913 5.128663 ACCAATTTTTGCAGAAACAGGTACT 59.871 36.000 20.00 3.31 43.88 2.73
2859 2914 5.356426 ACCAATTTTTGCAGAAACAGGTAC 58.644 37.500 20.00 0.00 31.25 3.34
2860 2915 5.606348 ACCAATTTTTGCAGAAACAGGTA 57.394 34.783 20.00 0.00 31.25 3.08
2861 2916 4.486125 ACCAATTTTTGCAGAAACAGGT 57.514 36.364 17.28 17.28 0.00 4.00
2862 2917 6.917217 TTAACCAATTTTTGCAGAAACAGG 57.083 33.333 16.29 16.29 0.00 4.00
2886 2941 9.206870 CACAAAGGAATTGCACATTAATAACTT 57.793 29.630 0.00 0.00 43.13 2.66
2887 2942 8.584157 TCACAAAGGAATTGCACATTAATAACT 58.416 29.630 0.00 0.00 43.13 2.24
2891 2946 8.530311 TGTATCACAAAGGAATTGCACATTAAT 58.470 29.630 0.00 0.00 43.13 1.40
2984 3039 2.030562 CGGTTCACGGTTCCAGCT 59.969 61.111 0.00 0.00 39.42 4.24
3059 3114 1.000607 TCAGTAGCGGTTGTGTCTGAC 60.001 52.381 0.00 0.00 0.00 3.51
3077 3132 0.676782 TCTCGATGACGGACAGCTCA 60.677 55.000 0.00 0.00 40.21 4.26
3128 3183 0.317854 TCATGTCATCGACGATCGCC 60.318 55.000 16.60 2.22 40.21 5.54
3243 3303 0.320771 AACAGCTTAGACAGGCACGG 60.321 55.000 0.00 0.00 0.00 4.94
3274 3335 6.931840 AGTTTGTAGTTCCAGATTCAGAAGAC 59.068 38.462 0.00 0.00 0.00 3.01
3317 3378 7.040201 ACGTCTTCCGATACCATAAGCTTTATA 60.040 37.037 3.20 0.00 40.70 0.98
3318 3379 6.157211 CGTCTTCCGATACCATAAGCTTTAT 58.843 40.000 3.20 0.00 39.56 1.40
3328 3389 0.454600 GAGCACGTCTTCCGATACCA 59.545 55.000 0.00 0.00 40.70 3.25
3366 3427 6.810911 ACATCACTCGCAGTTATAAGATTCT 58.189 36.000 0.00 0.00 0.00 2.40
3399 3460 4.067896 AGTTGGCCAATGCTCGAATATAG 58.932 43.478 23.66 0.00 37.74 1.31
3400 3461 4.085357 AGTTGGCCAATGCTCGAATATA 57.915 40.909 23.66 0.00 37.74 0.86
3401 3462 2.936202 AGTTGGCCAATGCTCGAATAT 58.064 42.857 23.66 0.00 37.74 1.28
3402 3463 2.418368 AGTTGGCCAATGCTCGAATA 57.582 45.000 23.66 0.00 37.74 1.75
3403 3464 1.549203 AAGTTGGCCAATGCTCGAAT 58.451 45.000 23.66 0.00 37.74 3.34
3404 3465 1.000385 CAAAGTTGGCCAATGCTCGAA 60.000 47.619 23.66 0.00 37.74 3.71
3450 3570 6.898041 GCATGTGCCGATTATACTTTTGATA 58.102 36.000 0.00 0.00 34.31 2.15
3525 5127 1.867233 GCCTGTCGTGTTATATGGCAG 59.133 52.381 0.00 0.00 45.59 4.85
3528 5130 1.858458 CGTGCCTGTCGTGTTATATGG 59.142 52.381 0.00 0.00 0.00 2.74
3539 5141 0.729116 CAACATCATCCGTGCCTGTC 59.271 55.000 0.00 0.00 0.00 3.51
3541 5143 1.935873 CTACAACATCATCCGTGCCTG 59.064 52.381 0.00 0.00 0.00 4.85
3549 5151 7.592938 TGTTTCAAATGGACTACAACATCATC 58.407 34.615 0.00 0.00 0.00 2.92
3560 5162 9.136323 AGTCTTTTTAGATGTTTCAAATGGACT 57.864 29.630 0.00 0.00 0.00 3.85
3575 5177 9.760077 CCGCTCCTAAATATAAGTCTTTTTAGA 57.240 33.333 13.43 3.76 34.90 2.10
3576 5178 9.760077 TCCGCTCCTAAATATAAGTCTTTTTAG 57.240 33.333 7.75 7.75 33.47 1.85
3577 5179 9.760077 CTCCGCTCCTAAATATAAGTCTTTTTA 57.240 33.333 0.00 0.00 0.00 1.52
3578 5180 7.715686 CCTCCGCTCCTAAATATAAGTCTTTTT 59.284 37.037 0.00 0.00 0.00 1.94
3579 5181 7.217906 CCTCCGCTCCTAAATATAAGTCTTTT 58.782 38.462 0.00 0.00 0.00 2.27
3580 5182 6.239629 CCCTCCGCTCCTAAATATAAGTCTTT 60.240 42.308 0.00 0.00 0.00 2.52
3581 5183 5.246429 CCCTCCGCTCCTAAATATAAGTCTT 59.754 44.000 0.00 0.00 0.00 3.01
3582 5184 4.773149 CCCTCCGCTCCTAAATATAAGTCT 59.227 45.833 0.00 0.00 0.00 3.24
3583 5185 4.771054 TCCCTCCGCTCCTAAATATAAGTC 59.229 45.833 0.00 0.00 0.00 3.01
3584 5186 4.748701 TCCCTCCGCTCCTAAATATAAGT 58.251 43.478 0.00 0.00 0.00 2.24
3585 5187 4.773149 ACTCCCTCCGCTCCTAAATATAAG 59.227 45.833 0.00 0.00 0.00 1.73
3586 5188 4.748701 ACTCCCTCCGCTCCTAAATATAA 58.251 43.478 0.00 0.00 0.00 0.98
3587 5189 4.399483 ACTCCCTCCGCTCCTAAATATA 57.601 45.455 0.00 0.00 0.00 0.86
3588 5190 3.261818 ACTCCCTCCGCTCCTAAATAT 57.738 47.619 0.00 0.00 0.00 1.28
3589 5191 2.769602 ACTCCCTCCGCTCCTAAATA 57.230 50.000 0.00 0.00 0.00 1.40
3590 5192 2.091222 ACTACTCCCTCCGCTCCTAAAT 60.091 50.000 0.00 0.00 0.00 1.40
3591 5193 1.287146 ACTACTCCCTCCGCTCCTAAA 59.713 52.381 0.00 0.00 0.00 1.85
3592 5194 0.924823 ACTACTCCCTCCGCTCCTAA 59.075 55.000 0.00 0.00 0.00 2.69
3593 5195 1.419387 GTACTACTCCCTCCGCTCCTA 59.581 57.143 0.00 0.00 0.00 2.94
3594 5196 0.183252 GTACTACTCCCTCCGCTCCT 59.817 60.000 0.00 0.00 0.00 3.69
3595 5197 0.106819 TGTACTACTCCCTCCGCTCC 60.107 60.000 0.00 0.00 0.00 4.70
3596 5198 1.310904 CTGTACTACTCCCTCCGCTC 58.689 60.000 0.00 0.00 0.00 5.03
3597 5199 0.624785 ACTGTACTACTCCCTCCGCT 59.375 55.000 0.00 0.00 0.00 5.52
3598 5200 1.946081 GTACTGTACTACTCCCTCCGC 59.054 57.143 10.64 0.00 0.00 5.54
3599 5201 2.941720 GTGTACTGTACTACTCCCTCCG 59.058 54.545 17.98 0.00 0.00 4.63
3600 5202 3.053768 AGGTGTACTGTACTACTCCCTCC 60.054 52.174 17.98 8.11 32.71 4.30
3601 5203 4.233632 AGGTGTACTGTACTACTCCCTC 57.766 50.000 17.98 3.63 32.71 4.30
3602 5204 4.671596 AAGGTGTACTGTACTACTCCCT 57.328 45.455 17.98 11.87 32.71 4.20
3603 5205 7.415592 AATAAAGGTGTACTGTACTACTCCC 57.584 40.000 17.98 10.14 32.71 4.30
3606 5208 9.846248 CGTAAAATAAAGGTGTACTGTACTACT 57.154 33.333 17.98 12.80 0.00 2.57
3607 5209 9.840427 TCGTAAAATAAAGGTGTACTGTACTAC 57.160 33.333 17.98 13.59 0.00 2.73
3626 5228 7.356540 CCCATGCGTTGATTATTATCGTAAAA 58.643 34.615 0.00 0.00 33.23 1.52
3645 5264 2.409870 CCAAGTTCTCGGCCCATGC 61.410 63.158 0.00 0.00 0.00 4.06
3886 5505 1.031235 TGTTCAACTACGACCCGACA 58.969 50.000 0.00 0.00 0.00 4.35
3898 5517 2.095768 ACGTATGCATGCAGTGTTCAAC 60.096 45.455 26.69 12.93 0.00 3.18
3915 5534 1.942677 CATGCGGATTTGGGTACGTA 58.057 50.000 0.00 0.00 0.00 3.57
3917 5536 1.355210 GCATGCGGATTTGGGTACG 59.645 57.895 0.00 0.00 0.00 3.67
3933 5555 4.316645 CATGAAAATTGGTGGTTGATGCA 58.683 39.130 0.00 0.00 0.00 3.96
3945 5567 5.809464 TCTACGTATGCTGCATGAAAATTG 58.191 37.500 24.59 8.95 0.00 2.32
3961 5583 6.617879 GTGCATACATACATGGATCTACGTA 58.382 40.000 0.00 0.00 0.00 3.57
3962 5584 5.470368 GTGCATACATACATGGATCTACGT 58.530 41.667 0.00 0.00 0.00 3.57
3964 5586 5.470368 ACGTGCATACATACATGGATCTAC 58.530 41.667 0.00 0.00 0.00 2.59
3966 5588 4.607293 ACGTGCATACATACATGGATCT 57.393 40.909 0.00 0.00 0.00 2.75
3989 5611 6.624423 CAGTTTTATTTGAACCCAGAGATGG 58.376 40.000 0.00 0.00 0.00 3.51
3990 5612 6.095377 GCAGTTTTATTTGAACCCAGAGATG 58.905 40.000 0.00 0.00 0.00 2.90
3991 5613 5.774690 TGCAGTTTTATTTGAACCCAGAGAT 59.225 36.000 0.00 0.00 0.00 2.75
3992 5614 5.136828 TGCAGTTTTATTTGAACCCAGAGA 58.863 37.500 0.00 0.00 0.00 3.10
3993 5615 5.452078 TGCAGTTTTATTTGAACCCAGAG 57.548 39.130 0.00 0.00 0.00 3.35
3994 5616 5.860941 TTGCAGTTTTATTTGAACCCAGA 57.139 34.783 0.00 0.00 0.00 3.86
3995 5617 6.917217 TTTTGCAGTTTTATTTGAACCCAG 57.083 33.333 0.00 0.00 0.00 4.45
3997 5619 7.078011 TGTTTTTGCAGTTTTATTTGAACCC 57.922 32.000 0.00 0.00 0.00 4.11
3998 5620 8.611757 AGATGTTTTTGCAGTTTTATTTGAACC 58.388 29.630 0.00 0.00 0.00 3.62
3999 5621 9.986833 AAGATGTTTTTGCAGTTTTATTTGAAC 57.013 25.926 0.00 0.00 0.00 3.18
4002 5624 9.566624 CGTAAGATGTTTTTGCAGTTTTATTTG 57.433 29.630 0.00 0.00 43.02 2.32
4005 5627 8.865590 AACGTAAGATGTTTTTGCAGTTTTAT 57.134 26.923 0.00 0.00 43.62 1.40
4006 5628 8.690680 AAACGTAAGATGTTTTTGCAGTTTTA 57.309 26.923 0.00 0.00 33.87 1.52
4014 5636 9.710979 TCTGTTTCTAAACGTAAGATGTTTTTG 57.289 29.630 2.37 0.00 41.74 2.44
4020 5642 6.090898 CACCCTCTGTTTCTAAACGTAAGATG 59.909 42.308 1.72 0.00 41.74 2.90
4023 5645 5.295152 ACACCCTCTGTTTCTAAACGTAAG 58.705 41.667 0.00 0.00 41.74 2.34
4027 5649 3.671928 CGTACACCCTCTGTTTCTAAACG 59.328 47.826 0.00 0.00 41.74 3.60
4028 5650 4.625028 ACGTACACCCTCTGTTTCTAAAC 58.375 43.478 0.00 0.00 39.33 2.01
4038 5670 1.076024 TCCTTGGTACGTACACCCTCT 59.924 52.381 26.02 0.00 37.84 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.