Multiple sequence alignment - TraesCS2D01G145400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G145400 chr2D 100.000 3605 0 0 1 3605 87268252 87271856 0.000000e+00 6658.0
1 TraesCS2D01G145400 chr2D 83.846 130 11 6 1858 1985 644995433 644995312 8.180000e-22 115.0
2 TraesCS2D01G145400 chr2D 100.000 59 0 0 1 59 87261494 87261436 3.810000e-20 110.0
3 TraesCS2D01G145400 chr2D 100.000 59 0 0 1 59 543300025 543300083 3.810000e-20 110.0
4 TraesCS2D01G145400 chr2A 87.961 1628 83 30 60 1636 87459623 87461188 0.000000e+00 1816.0
5 TraesCS2D01G145400 chr2A 91.251 1223 79 18 1683 2892 87461324 87462531 0.000000e+00 1640.0
6 TraesCS2D01G145400 chr2A 78.804 184 31 7 292 475 752280654 752280829 2.270000e-22 117.0
7 TraesCS2D01G145400 chr2A 98.387 62 1 0 1 62 38365629 38365568 3.810000e-20 110.0
8 TraesCS2D01G145400 chr2B 85.564 1524 96 46 60 1495 139913365 139914852 0.000000e+00 1482.0
9 TraesCS2D01G145400 chr2B 94.283 927 43 9 1957 2875 139915713 139916637 0.000000e+00 1410.0
10 TraesCS2D01G145400 chr2B 85.437 206 14 2 1482 1676 139914902 139915102 2.200000e-47 200.0
11 TraesCS2D01G145400 chr2B 87.356 87 4 4 1670 1749 139915182 139915268 3.830000e-15 93.5
12 TraesCS2D01G145400 chr6D 98.023 708 13 1 2899 3605 375824806 375825513 0.000000e+00 1229.0
13 TraesCS2D01G145400 chr6D 97.316 708 18 1 2899 3605 7236622 7237329 0.000000e+00 1201.0
14 TraesCS2D01G145400 chr6D 83.333 132 15 4 1858 1988 9961540 9961665 8.180000e-22 115.0
15 TraesCS2D01G145400 chr6D 97.143 35 1 0 134 168 113609459 113609493 3.890000e-05 60.2
16 TraesCS2D01G145400 chr1D 98.025 709 11 3 2899 3605 345436622 345437329 0.000000e+00 1229.0
17 TraesCS2D01G145400 chr4D 97.881 708 13 2 2899 3605 335168480 335169186 0.000000e+00 1223.0
18 TraesCS2D01G145400 chrUn 97.740 708 15 1 2899 3605 95576509 95575802 0.000000e+00 1218.0
19 TraesCS2D01G145400 chrUn 84.559 136 11 8 1857 1990 97121042 97120915 3.780000e-25 126.0
20 TraesCS2D01G145400 chr3D 97.740 708 15 1 2899 3605 380126261 380126968 0.000000e+00 1218.0
21 TraesCS2D01G145400 chr3D 97.320 709 16 3 2899 3605 11937125 11937832 0.000000e+00 1201.0
22 TraesCS2D01G145400 chr3D 85.039 127 13 3 1851 1976 104219162 104219283 1.360000e-24 124.0
23 TraesCS2D01G145400 chr3D 100.000 59 0 0 1 59 516909882 516909940 3.810000e-20 110.0
24 TraesCS2D01G145400 chr3D 98.361 61 1 0 1 61 516903109 516903049 1.370000e-19 108.0
25 TraesCS2D01G145400 chr7D 97.599 708 16 1 2899 3605 162226420 162227127 0.000000e+00 1212.0
26 TraesCS2D01G145400 chr7D 85.938 128 12 3 1851 1977 399651509 399651631 8.120000e-27 132.0
27 TraesCS2D01G145400 chr7D 100.000 59 0 0 1 59 417367748 417367806 3.810000e-20 110.0
28 TraesCS2D01G145400 chr5D 97.599 708 16 1 2899 3605 559380120 559380827 0.000000e+00 1212.0
29 TraesCS2D01G145400 chr5D 83.459 133 15 4 1858 1989 214357642 214357768 2.270000e-22 117.0
30 TraesCS2D01G145400 chr5D 100.000 59 0 0 1 59 553670854 553670912 3.810000e-20 110.0
31 TraesCS2D01G145400 chr1B 94.495 109 6 0 63 171 282079611 282079503 6.190000e-38 169.0
32 TraesCS2D01G145400 chr1B 94.495 109 6 0 63 171 282103938 282103830 6.190000e-38 169.0
33 TraesCS2D01G145400 chr5A 88.596 114 13 0 60 173 203029988 203030101 4.850000e-29 139.0
34 TraesCS2D01G145400 chr4A 85.827 127 10 4 1863 1988 2567997 2567878 1.050000e-25 128.0
35 TraesCS2D01G145400 chr6A 84.733 131 10 8 1857 1985 467600985 467601107 4.890000e-24 122.0
36 TraesCS2D01G145400 chr1A 95.455 66 3 0 1 66 549492976 549492911 4.920000e-19 106.0
37 TraesCS2D01G145400 chr7A 98.305 59 1 0 1 59 691256931 691256989 1.770000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G145400 chr2D 87268252 87271856 3604 False 6658.000 6658 100.000 1 3605 1 chr2D.!!$F1 3604
1 TraesCS2D01G145400 chr2A 87459623 87462531 2908 False 1728.000 1816 89.606 60 2892 2 chr2A.!!$F2 2832
2 TraesCS2D01G145400 chr2B 139913365 139916637 3272 False 796.375 1482 88.160 60 2875 4 chr2B.!!$F1 2815
3 TraesCS2D01G145400 chr6D 375824806 375825513 707 False 1229.000 1229 98.023 2899 3605 1 chr6D.!!$F4 706
4 TraesCS2D01G145400 chr6D 7236622 7237329 707 False 1201.000 1201 97.316 2899 3605 1 chr6D.!!$F1 706
5 TraesCS2D01G145400 chr1D 345436622 345437329 707 False 1229.000 1229 98.025 2899 3605 1 chr1D.!!$F1 706
6 TraesCS2D01G145400 chr4D 335168480 335169186 706 False 1223.000 1223 97.881 2899 3605 1 chr4D.!!$F1 706
7 TraesCS2D01G145400 chrUn 95575802 95576509 707 True 1218.000 1218 97.740 2899 3605 1 chrUn.!!$R1 706
8 TraesCS2D01G145400 chr3D 380126261 380126968 707 False 1218.000 1218 97.740 2899 3605 1 chr3D.!!$F3 706
9 TraesCS2D01G145400 chr3D 11937125 11937832 707 False 1201.000 1201 97.320 2899 3605 1 chr3D.!!$F1 706
10 TraesCS2D01G145400 chr7D 162226420 162227127 707 False 1212.000 1212 97.599 2899 3605 1 chr7D.!!$F1 706
11 TraesCS2D01G145400 chr5D 559380120 559380827 707 False 1212.000 1212 97.599 2899 3605 1 chr5D.!!$F3 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.178855 ACCTGTTACCCTAGCCCCAA 60.179 55.0 0.00 0.0 0.00 4.12 F
189 213 0.241749 TAATCGTGACCGTGCTCGTT 59.758 50.0 7.47 0.0 35.01 3.85 F
1643 1861 0.319211 CGGGTCGCTGTTCAAGTGTA 60.319 55.0 0.00 0.0 37.67 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1363 1461 0.036388 TCCAAGAACTCGGCACATCC 60.036 55.0 0.0 0.0 0.0 3.51 R
1902 2424 0.037160 ATTAACACACACCCCCGTCC 59.963 55.0 0.0 0.0 0.0 4.79 R
2988 3585 0.108041 GCGACCTTAACAATCCCCGA 60.108 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.429971 GGTACTGACCTGTTACCCTAGC 59.570 54.545 0.00 0.00 43.16 3.42
28 29 1.569653 ACTGACCTGTTACCCTAGCC 58.430 55.000 0.00 0.00 0.00 3.93
29 30 0.831307 CTGACCTGTTACCCTAGCCC 59.169 60.000 0.00 0.00 0.00 5.19
30 31 0.619543 TGACCTGTTACCCTAGCCCC 60.620 60.000 0.00 0.00 0.00 5.80
31 32 0.619543 GACCTGTTACCCTAGCCCCA 60.620 60.000 0.00 0.00 0.00 4.96
32 33 0.178855 ACCTGTTACCCTAGCCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
33 34 0.546598 CCTGTTACCCTAGCCCCAAG 59.453 60.000 0.00 0.00 0.00 3.61
34 35 1.286248 CTGTTACCCTAGCCCCAAGT 58.714 55.000 0.00 0.00 0.00 3.16
35 36 0.988832 TGTTACCCTAGCCCCAAGTG 59.011 55.000 0.00 0.00 0.00 3.16
36 37 0.989602 GTTACCCTAGCCCCAAGTGT 59.010 55.000 0.00 0.00 0.00 3.55
37 38 0.988832 TTACCCTAGCCCCAAGTGTG 59.011 55.000 0.00 0.00 0.00 3.82
38 39 0.912487 TACCCTAGCCCCAAGTGTGG 60.912 60.000 0.00 0.00 45.53 4.17
39 40 2.231380 CCCTAGCCCCAAGTGTGGT 61.231 63.158 0.00 0.00 44.30 4.16
40 41 1.002134 CCTAGCCCCAAGTGTGGTG 60.002 63.158 0.00 0.00 44.30 4.17
41 42 1.002134 CTAGCCCCAAGTGTGGTGG 60.002 63.158 0.00 0.00 44.30 4.61
42 43 1.772567 TAGCCCCAAGTGTGGTGGT 60.773 57.895 0.00 0.00 44.30 4.16
43 44 1.357272 TAGCCCCAAGTGTGGTGGTT 61.357 55.000 0.00 0.00 44.30 3.67
44 45 1.760480 GCCCCAAGTGTGGTGGTTT 60.760 57.895 0.00 0.00 44.30 3.27
45 46 1.334384 GCCCCAAGTGTGGTGGTTTT 61.334 55.000 0.00 0.00 44.30 2.43
46 47 0.463620 CCCCAAGTGTGGTGGTTTTG 59.536 55.000 0.00 0.00 44.30 2.44
47 48 0.463620 CCCAAGTGTGGTGGTTTTGG 59.536 55.000 0.00 0.00 44.30 3.28
48 49 0.463620 CCAAGTGTGGTGGTTTTGGG 59.536 55.000 0.00 0.00 40.42 4.12
49 50 1.190643 CAAGTGTGGTGGTTTTGGGT 58.809 50.000 0.00 0.00 0.00 4.51
50 51 2.379972 CAAGTGTGGTGGTTTTGGGTA 58.620 47.619 0.00 0.00 0.00 3.69
51 52 2.761208 CAAGTGTGGTGGTTTTGGGTAA 59.239 45.455 0.00 0.00 0.00 2.85
52 53 3.103080 AGTGTGGTGGTTTTGGGTAAA 57.897 42.857 0.00 0.00 0.00 2.01
53 54 3.648739 AGTGTGGTGGTTTTGGGTAAAT 58.351 40.909 0.00 0.00 0.00 1.40
54 55 4.805744 AGTGTGGTGGTTTTGGGTAAATA 58.194 39.130 0.00 0.00 0.00 1.40
55 56 5.209659 AGTGTGGTGGTTTTGGGTAAATAA 58.790 37.500 0.00 0.00 0.00 1.40
56 57 5.069383 AGTGTGGTGGTTTTGGGTAAATAAC 59.931 40.000 0.00 0.00 0.00 1.89
57 58 5.069383 GTGTGGTGGTTTTGGGTAAATAACT 59.931 40.000 0.00 0.00 0.00 2.24
58 59 5.302313 TGTGGTGGTTTTGGGTAAATAACTC 59.698 40.000 0.00 0.00 0.00 3.01
119 120 1.448717 GAAGGAGAAGTGGGCTCGC 60.449 63.158 0.00 0.00 33.19 5.03
139 141 1.980772 CCTTCGACGTAGGGGGTGT 60.981 63.158 12.39 0.00 0.00 4.16
175 197 3.179048 TGACGAGCAACATGACTAATCG 58.821 45.455 0.00 5.18 35.00 3.34
185 207 0.885879 TGACTAATCGTGACCGTGCT 59.114 50.000 0.00 0.00 35.01 4.40
189 213 0.241749 TAATCGTGACCGTGCTCGTT 59.758 50.000 7.47 0.00 35.01 3.85
209 233 0.462047 CGCTCCTAGCCGTTGGAATT 60.462 55.000 0.00 0.00 38.18 2.17
211 235 1.017387 CTCCTAGCCGTTGGAATTGC 58.983 55.000 0.00 0.00 31.23 3.56
237 261 2.097110 TGCTCATATTAGTCCCGGGT 57.903 50.000 22.86 4.16 0.00 5.28
245 269 0.474273 TTAGTCCCGGGTCCAAACCT 60.474 55.000 22.86 8.48 45.66 3.50
299 323 4.082136 AGTTTTCTACTAGTGCGCTAGCTT 60.082 41.667 29.78 16.57 46.56 3.74
309 333 2.614057 GTGCGCTAGCTTCATACCATTT 59.386 45.455 13.93 0.00 45.42 2.32
315 339 5.050499 CGCTAGCTTCATACCATTTCTTCAG 60.050 44.000 13.93 0.00 0.00 3.02
328 352 2.645838 TCTTCAGTGCCAAAGCTTCT 57.354 45.000 0.00 0.00 40.80 2.85
337 361 0.662374 CCAAAGCTTCTGTTGCAGCG 60.662 55.000 0.00 0.00 41.24 5.18
338 362 0.662374 CAAAGCTTCTGTTGCAGCGG 60.662 55.000 0.00 2.41 41.24 5.52
339 363 2.412037 AAAGCTTCTGTTGCAGCGGC 62.412 55.000 4.19 0.31 41.24 6.53
349 373 3.583383 GCAGCGGCATCTTCTGTT 58.417 55.556 3.18 0.00 40.72 3.16
350 374 1.136147 GCAGCGGCATCTTCTGTTG 59.864 57.895 3.18 0.00 40.72 3.33
351 375 1.136147 CAGCGGCATCTTCTGTTGC 59.864 57.895 1.45 0.00 37.97 4.17
352 376 1.302752 AGCGGCATCTTCTGTTGCA 60.303 52.632 1.45 0.00 39.83 4.08
353 377 1.136147 GCGGCATCTTCTGTTGCAG 59.864 57.895 0.00 0.00 39.83 4.41
354 378 1.136147 CGGCATCTTCTGTTGCAGC 59.864 57.895 0.00 0.00 39.83 5.25
385 409 2.106566 ACATGTTGTTGACCCAGCAAA 58.893 42.857 0.00 0.00 36.44 3.68
396 420 1.531365 CCAGCAAAAGCCTCACCCA 60.531 57.895 0.00 0.00 0.00 4.51
419 443 0.660300 GGTTTCAAAGAAGCGCCGTG 60.660 55.000 2.29 0.00 0.00 4.94
438 462 1.522580 GTGGCTCCGCTTCCATCTC 60.523 63.158 0.00 0.00 34.47 2.75
468 492 3.547468 GCATGCATCCACGTTCATTTTAC 59.453 43.478 14.21 0.00 0.00 2.01
504 528 7.103641 ACAGTACTTGTATACCAGATGGTTTG 58.896 38.462 10.31 3.58 41.63 2.93
532 559 9.535878 AATAGACTCGAATCCTCTTATTTCAAC 57.464 33.333 0.00 0.00 0.00 3.18
534 561 7.038659 AGACTCGAATCCTCTTATTTCAACTG 58.961 38.462 0.00 0.00 0.00 3.16
618 647 2.047274 CAACACCGACGCCCTGAT 60.047 61.111 0.00 0.00 0.00 2.90
665 700 1.294459 GTCCGGTGGTACCAACTCC 59.706 63.158 27.07 17.98 38.47 3.85
709 744 4.027991 CGCTTTCTTAATTCGTTTGCTTCG 59.972 41.667 0.00 0.00 0.00 3.79
763 798 2.567985 GGGCGCCTTTTATTAGTAGCA 58.432 47.619 28.56 0.00 0.00 3.49
900 939 2.563179 GGACAGAGGAGTAAGCAAGTGA 59.437 50.000 0.00 0.00 0.00 3.41
1263 1354 1.000955 AGCATAGTGTAGGCGTATGGC 59.999 52.381 0.00 0.00 40.98 4.40
1398 1503 2.851263 TGGATGTCACTAAGCGGTTT 57.149 45.000 4.64 0.00 0.00 3.27
1399 1504 2.695359 TGGATGTCACTAAGCGGTTTC 58.305 47.619 4.64 0.00 0.00 2.78
1438 1559 5.129155 AGATCTGGTCTTCCAAGATCTCTTG 59.871 44.000 12.09 12.09 44.93 3.02
1473 1594 8.237811 ACCTTCATTTGGGACATGATAATTAC 57.762 34.615 0.00 0.00 39.30 1.89
1476 1597 8.463930 TTCATTTGGGACATGATAATTACTCC 57.536 34.615 0.00 0.00 39.30 3.85
1479 1600 7.639113 TTTGGGACATGATAATTACTCCAAC 57.361 36.000 0.00 0.00 39.30 3.77
1489 1610 2.163818 TTACTCCAACTGTTCCAGCG 57.836 50.000 0.00 0.00 34.37 5.18
1536 1720 0.608640 ATGGTCAGGTCTCGTTGGTC 59.391 55.000 0.00 0.00 0.00 4.02
1538 1722 0.391597 GGTCAGGTCTCGTTGGTCAA 59.608 55.000 0.00 0.00 0.00 3.18
1643 1861 0.319211 CGGGTCGCTGTTCAAGTGTA 60.319 55.000 0.00 0.00 37.67 2.90
1661 1879 2.696187 TGTACTAGGCACAAGACACACA 59.304 45.455 0.00 0.00 0.00 3.72
1670 1888 4.215399 GGCACAAGACACACAGCTTAATTA 59.785 41.667 0.00 0.00 0.00 1.40
1676 1894 8.582437 ACAAGACACACAGCTTAATTAGTACTA 58.418 33.333 0.00 0.00 0.00 1.82
1677 1895 9.587772 CAAGACACACAGCTTAATTAGTACTAT 57.412 33.333 2.79 0.00 0.00 2.12
1679 1897 8.967918 AGACACACAGCTTAATTAGTACTATGA 58.032 33.333 2.79 0.00 0.00 2.15
1680 1898 9.751542 GACACACAGCTTAATTAGTACTATGAT 57.248 33.333 2.79 0.00 0.00 2.45
1703 2018 9.547753 TGATCAACTTATACTGGAAGATTTAGC 57.452 33.333 0.00 0.00 37.43 3.09
1704 2019 9.547753 GATCAACTTATACTGGAAGATTTAGCA 57.452 33.333 0.00 0.00 37.43 3.49
1706 2021 9.905713 TCAACTTATACTGGAAGATTTAGCAAT 57.094 29.630 0.00 0.00 37.43 3.56
1738 2059 3.003480 GAGTGCTTTTGCCTCGTAGAAT 58.997 45.455 0.00 0.00 46.87 2.40
1743 2064 3.437049 GCTTTTGCCTCGTAGAATTCTGT 59.563 43.478 18.47 0.00 40.15 3.41
1756 2078 6.088749 CGTAGAATTCTGTTTCTCACTCACAG 59.911 42.308 18.47 0.00 39.51 3.66
1757 2079 4.754114 AGAATTCTGTTTCTCACTCACAGC 59.246 41.667 7.30 0.00 38.27 4.40
1779 2301 5.550232 CATAGTTGCACTGCATGTTTAGA 57.450 39.130 4.10 0.00 38.76 2.10
1782 2304 3.251729 AGTTGCACTGCATGTTTAGACAG 59.748 43.478 4.10 0.00 39.58 3.51
1806 2328 2.662006 TGAAGAGAACTCTGCATCCG 57.338 50.000 8.29 0.00 40.25 4.18
1829 2351 2.827322 TGTTTTGATGCTGCAGCCTATT 59.173 40.909 34.64 17.42 41.18 1.73
1841 2363 2.024414 CAGCCTATTACCTTGTTGCCC 58.976 52.381 0.00 0.00 0.00 5.36
1844 2366 1.680555 CCTATTACCTTGTTGCCCGCA 60.681 52.381 0.00 0.00 0.00 5.69
1855 2377 2.435938 GCCCGCACGATCCTTTGA 60.436 61.111 0.00 0.00 0.00 2.69
1859 2381 0.670546 CCGCACGATCCTTTGAGTGT 60.671 55.000 0.00 0.00 36.99 3.55
1867 2389 1.369209 CCTTTGAGTGTGCGCGTTG 60.369 57.895 8.43 0.00 0.00 4.10
1868 2390 1.369209 CTTTGAGTGTGCGCGTTGG 60.369 57.895 8.43 0.00 0.00 3.77
1873 2395 2.650602 GTGTGCGCGTTGGTGTTG 60.651 61.111 8.43 0.00 0.00 3.33
1886 2408 1.174712 GGTGTTGGCTGTGTGCATCT 61.175 55.000 0.00 0.00 45.15 2.90
1891 2413 3.244387 TGTTGGCTGTGTGCATCTTAGTA 60.244 43.478 0.00 0.00 45.15 1.82
1892 2414 2.972625 TGGCTGTGTGCATCTTAGTAC 58.027 47.619 0.00 0.00 45.15 2.73
1901 2423 3.131223 GTGCATCTTAGTACTGCAGAGGA 59.869 47.826 23.35 3.80 45.77 3.71
1902 2424 3.382865 TGCATCTTAGTACTGCAGAGGAG 59.617 47.826 23.35 10.45 40.75 3.69
1905 2427 3.622630 TCTTAGTACTGCAGAGGAGGAC 58.377 50.000 23.35 7.99 0.00 3.85
1906 2428 2.039818 TAGTACTGCAGAGGAGGACG 57.960 55.000 23.35 0.00 0.00 4.79
1907 2429 0.681564 AGTACTGCAGAGGAGGACGG 60.682 60.000 23.35 0.00 0.00 4.79
1908 2430 1.379977 TACTGCAGAGGAGGACGGG 60.380 63.158 23.35 0.00 0.00 5.28
1909 2431 2.856039 TACTGCAGAGGAGGACGGGG 62.856 65.000 23.35 0.00 0.00 5.73
1917 2439 3.239253 GAGGACGGGGGTGTGTGT 61.239 66.667 0.00 0.00 0.00 3.72
1919 2441 1.459921 AGGACGGGGGTGTGTGTTA 60.460 57.895 0.00 0.00 0.00 2.41
1938 2460 6.551601 TGTGTTAATTGTGTTTGTATCCCCTT 59.448 34.615 0.00 0.00 0.00 3.95
1955 2477 4.166725 TCCCCTTGATGCTTCATTATGAGT 59.833 41.667 2.75 0.00 0.00 3.41
1972 2560 9.801873 CATTATGAGTTAATTAAACCACCCTTG 57.198 33.333 0.00 0.00 39.03 3.61
2226 2820 1.921857 CCCCGACTACCCCCAGTTT 60.922 63.158 0.00 0.00 0.00 2.66
2338 2932 1.523758 CAACTACACCAAGTCCCAGC 58.476 55.000 0.00 0.00 0.00 4.85
2374 2968 1.669440 GACACCAAGTACTCCGGCA 59.331 57.895 10.50 0.00 0.00 5.69
2475 3069 4.785453 GGCTCCAACTGGGCTCCG 62.785 72.222 8.50 0.00 36.21 4.63
2550 3144 3.122297 GCTGATGAAGTGAGAAGATCGG 58.878 50.000 0.00 0.00 0.00 4.18
2561 3155 3.131396 GAGAAGATCGGTGTTGTGTTGT 58.869 45.455 0.00 0.00 0.00 3.32
2593 3187 1.442769 CTACACCGCTGCAAATGAGT 58.557 50.000 0.00 0.00 0.00 3.41
2614 3208 1.064060 GTGTTGATCTTATGCCCGTGC 59.936 52.381 0.00 0.00 38.26 5.34
2620 3214 0.254462 TCTTATGCCCGTGCCAATCA 59.746 50.000 0.00 0.00 36.33 2.57
2630 3224 3.381272 CCCGTGCCAATCATTTCTGTATT 59.619 43.478 0.00 0.00 0.00 1.89
2720 3315 6.701841 GGTTTGGGATCAAAACTTTTTCTCTC 59.298 38.462 17.72 1.27 44.75 3.20
2721 3316 5.689383 TGGGATCAAAACTTTTTCTCTCG 57.311 39.130 0.00 0.00 0.00 4.04
2722 3317 4.023193 TGGGATCAAAACTTTTTCTCTCGC 60.023 41.667 0.00 0.00 0.00 5.03
2783 3379 0.250424 TGTGGTCAGGTGATGTGCAG 60.250 55.000 0.00 0.00 0.00 4.41
2808 3404 8.734386 AGTATTGAACCACATCTTTCATCTTTC 58.266 33.333 0.00 0.00 31.87 2.62
2888 3485 8.845227 TCAATTTCTTTTAACATCTGTACTGCA 58.155 29.630 0.00 0.00 0.00 4.41
2892 3489 7.364522 TCTTTTAACATCTGTACTGCACATC 57.635 36.000 0.00 0.00 36.29 3.06
2893 3490 7.161404 TCTTTTAACATCTGTACTGCACATCT 58.839 34.615 0.00 0.00 36.29 2.90
2894 3491 7.661437 TCTTTTAACATCTGTACTGCACATCTT 59.339 33.333 0.00 0.00 36.29 2.40
2895 3492 7.744087 TTTAACATCTGTACTGCACATCTTT 57.256 32.000 0.00 0.00 36.29 2.52
2896 3493 5.869753 AACATCTGTACTGCACATCTTTC 57.130 39.130 0.00 0.00 36.29 2.62
2897 3494 4.898320 ACATCTGTACTGCACATCTTTCA 58.102 39.130 0.00 0.00 36.29 2.69
2898 3495 5.308014 ACATCTGTACTGCACATCTTTCAA 58.692 37.500 0.00 0.00 36.29 2.69
2899 3496 5.180117 ACATCTGTACTGCACATCTTTCAAC 59.820 40.000 0.00 0.00 36.29 3.18
2900 3497 4.960938 TCTGTACTGCACATCTTTCAACT 58.039 39.130 0.00 0.00 36.29 3.16
2901 3498 5.368145 TCTGTACTGCACATCTTTCAACTT 58.632 37.500 0.00 0.00 36.29 2.66
2902 3499 5.822519 TCTGTACTGCACATCTTTCAACTTT 59.177 36.000 0.00 0.00 36.29 2.66
2974 3571 3.561143 AGCGAGAGGTTACTGATGAGAT 58.439 45.455 0.00 0.00 40.01 2.75
2988 3585 3.452264 TGATGAGATCCCGAACATGACTT 59.548 43.478 0.00 0.00 0.00 3.01
3575 4173 1.541379 TCGAGGATTCTGGACGACAA 58.459 50.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.429971 GGCTAGGGTAACAGGTCAGTAC 59.570 54.545 0.00 0.00 39.74 2.73
8 9 2.625087 GGGCTAGGGTAACAGGTCAGTA 60.625 54.545 0.00 0.00 39.74 2.74
9 10 1.569653 GGCTAGGGTAACAGGTCAGT 58.430 55.000 0.00 0.00 39.74 3.41
10 11 0.831307 GGGCTAGGGTAACAGGTCAG 59.169 60.000 0.00 0.00 39.74 3.51
11 12 0.619543 GGGGCTAGGGTAACAGGTCA 60.620 60.000 0.00 0.00 39.74 4.02
12 13 0.619543 TGGGGCTAGGGTAACAGGTC 60.620 60.000 0.00 0.00 39.74 3.85
13 14 0.178855 TTGGGGCTAGGGTAACAGGT 60.179 55.000 0.00 0.00 39.74 4.00
14 15 0.546598 CTTGGGGCTAGGGTAACAGG 59.453 60.000 0.00 0.00 39.74 4.00
15 16 1.065418 CACTTGGGGCTAGGGTAACAG 60.065 57.143 0.00 0.00 39.74 3.16
16 17 0.988832 CACTTGGGGCTAGGGTAACA 59.011 55.000 0.00 0.00 39.74 2.41
17 18 0.989602 ACACTTGGGGCTAGGGTAAC 59.010 55.000 0.00 0.00 0.00 2.50
18 19 0.988832 CACACTTGGGGCTAGGGTAA 59.011 55.000 0.00 0.00 0.00 2.85
19 20 0.912487 CCACACTTGGGGCTAGGGTA 60.912 60.000 0.00 0.00 39.57 3.69
20 21 2.231380 CCACACTTGGGGCTAGGGT 61.231 63.158 0.00 0.00 39.57 4.34
21 22 2.677228 CCACACTTGGGGCTAGGG 59.323 66.667 0.00 0.00 39.57 3.53
22 23 2.484287 CCACCACACTTGGGGCTAGG 62.484 65.000 0.00 0.00 46.42 3.02
23 24 1.002134 CCACCACACTTGGGGCTAG 60.002 63.158 0.00 0.00 46.42 3.42
24 25 1.357272 AACCACCACACTTGGGGCTA 61.357 55.000 0.00 0.00 46.42 3.93
25 26 2.236959 AAACCACCACACTTGGGGCT 62.237 55.000 0.00 0.00 46.42 5.19
26 27 1.334384 AAAACCACCACACTTGGGGC 61.334 55.000 0.00 0.00 46.42 5.80
30 31 1.190643 ACCCAAAACCACCACACTTG 58.809 50.000 0.00 0.00 0.00 3.16
31 32 2.830651 TACCCAAAACCACCACACTT 57.169 45.000 0.00 0.00 0.00 3.16
32 33 2.830651 TTACCCAAAACCACCACACT 57.169 45.000 0.00 0.00 0.00 3.55
33 34 5.069383 AGTTATTTACCCAAAACCACCACAC 59.931 40.000 0.00 0.00 0.00 3.82
34 35 5.209659 AGTTATTTACCCAAAACCACCACA 58.790 37.500 0.00 0.00 0.00 4.17
35 36 5.563280 CGAGTTATTTACCCAAAACCACCAC 60.563 44.000 0.00 0.00 0.00 4.16
36 37 4.519730 CGAGTTATTTACCCAAAACCACCA 59.480 41.667 0.00 0.00 0.00 4.17
37 38 4.520111 ACGAGTTATTTACCCAAAACCACC 59.480 41.667 0.00 0.00 0.00 4.61
38 39 5.694231 ACGAGTTATTTACCCAAAACCAC 57.306 39.130 0.00 0.00 0.00 4.16
39 40 5.826737 TGAACGAGTTATTTACCCAAAACCA 59.173 36.000 0.00 0.00 0.00 3.67
40 41 6.316440 TGAACGAGTTATTTACCCAAAACC 57.684 37.500 0.00 0.00 0.00 3.27
41 42 8.077386 TCATTGAACGAGTTATTTACCCAAAAC 58.923 33.333 0.00 0.00 0.00 2.43
42 43 8.167605 TCATTGAACGAGTTATTTACCCAAAA 57.832 30.769 0.00 0.00 0.00 2.44
43 44 7.747155 TCATTGAACGAGTTATTTACCCAAA 57.253 32.000 0.00 0.00 0.00 3.28
44 45 7.148154 CCATCATTGAACGAGTTATTTACCCAA 60.148 37.037 0.00 0.00 0.00 4.12
45 46 6.317642 CCATCATTGAACGAGTTATTTACCCA 59.682 38.462 0.00 0.00 0.00 4.51
46 47 6.725246 CCATCATTGAACGAGTTATTTACCC 58.275 40.000 0.00 0.00 0.00 3.69
47 48 6.038271 AGCCATCATTGAACGAGTTATTTACC 59.962 38.462 0.00 0.00 0.00 2.85
48 49 7.016361 AGCCATCATTGAACGAGTTATTTAC 57.984 36.000 0.00 0.00 0.00 2.01
49 50 6.019075 CGAGCCATCATTGAACGAGTTATTTA 60.019 38.462 0.00 0.00 0.00 1.40
50 51 5.220662 CGAGCCATCATTGAACGAGTTATTT 60.221 40.000 0.00 0.00 0.00 1.40
51 52 4.271049 CGAGCCATCATTGAACGAGTTATT 59.729 41.667 0.00 0.00 0.00 1.40
52 53 3.804325 CGAGCCATCATTGAACGAGTTAT 59.196 43.478 0.00 0.00 0.00 1.89
53 54 3.186909 CGAGCCATCATTGAACGAGTTA 58.813 45.455 0.00 0.00 0.00 2.24
54 55 2.002586 CGAGCCATCATTGAACGAGTT 58.997 47.619 0.00 0.00 0.00 3.01
55 56 1.645034 CGAGCCATCATTGAACGAGT 58.355 50.000 0.00 0.00 0.00 4.18
56 57 0.933097 CCGAGCCATCATTGAACGAG 59.067 55.000 0.00 0.00 0.00 4.18
57 58 0.534873 TCCGAGCCATCATTGAACGA 59.465 50.000 0.00 0.00 0.00 3.85
58 59 0.933097 CTCCGAGCCATCATTGAACG 59.067 55.000 0.00 0.00 0.00 3.95
139 141 0.173935 CGTCATGTGGCCGTACCTAA 59.826 55.000 0.00 0.00 40.22 2.69
185 207 2.338015 AACGGCTAGGAGCGAACGA 61.338 57.895 0.00 0.00 43.62 3.85
189 213 1.327690 ATTCCAACGGCTAGGAGCGA 61.328 55.000 0.00 0.00 43.62 4.93
237 261 0.178926 TAGTCCCGGTCAGGTTTGGA 60.179 55.000 0.00 0.00 38.74 3.53
245 269 1.681327 GGAGCACTAGTCCCGGTCA 60.681 63.158 11.59 0.00 0.00 4.02
299 323 4.299586 TGGCACTGAAGAAATGGTATGA 57.700 40.909 0.00 0.00 0.00 2.15
309 333 2.224606 CAGAAGCTTTGGCACTGAAGA 58.775 47.619 0.00 0.00 42.70 2.87
315 339 0.102844 TGCAACAGAAGCTTTGGCAC 59.897 50.000 0.00 0.00 41.70 5.01
337 361 1.136147 CGCTGCAACAGAAGATGCC 59.864 57.895 0.00 0.00 42.30 4.40
338 362 1.136147 CCGCTGCAACAGAAGATGC 59.864 57.895 0.00 0.00 43.17 3.91
339 363 1.136147 GCCGCTGCAACAGAAGATG 59.864 57.895 0.00 0.00 37.47 2.90
340 364 1.302752 TGCCGCTGCAACAGAAGAT 60.303 52.632 0.00 0.00 46.66 2.40
341 365 2.110835 TGCCGCTGCAACAGAAGA 59.889 55.556 0.00 0.00 46.66 2.87
350 374 3.060020 ATGTGCTTGATGCCGCTGC 62.060 57.895 0.00 0.00 42.00 5.25
351 375 1.226575 CATGTGCTTGATGCCGCTG 60.227 57.895 0.00 0.00 42.00 5.18
352 376 1.246056 AACATGTGCTTGATGCCGCT 61.246 50.000 0.00 0.00 42.00 5.52
353 377 1.074319 CAACATGTGCTTGATGCCGC 61.074 55.000 0.00 0.00 42.00 6.53
354 378 0.241749 ACAACATGTGCTTGATGCCG 59.758 50.000 0.00 0.00 42.00 5.69
396 420 1.067060 GGCGCTTCTTTGAAACCACTT 59.933 47.619 7.64 0.00 0.00 3.16
438 462 1.002792 CGTGGATGCATGCTTCATGAG 60.003 52.381 28.58 15.89 43.81 2.90
498 522 6.049955 AGGATTCGAGTCTATTTCAAACCA 57.950 37.500 7.92 0.00 0.00 3.67
504 528 9.751542 TGAAATAAGAGGATTCGAGTCTATTTC 57.248 33.333 21.12 21.12 33.39 2.17
532 559 3.612860 CGAGTCTATTTCAAACCGTCCAG 59.387 47.826 0.00 0.00 0.00 3.86
534 561 3.841643 TCGAGTCTATTTCAAACCGTCC 58.158 45.455 0.00 0.00 0.00 4.79
665 700 1.226660 GCATCGCGGGTTTTCCATG 60.227 57.895 6.13 0.32 42.91 3.66
709 744 1.268234 GCAGTGGCAGATTGATTACGC 60.268 52.381 0.00 0.00 40.72 4.42
1205 1288 5.646793 GGTTAGATTACAAGAACCAACCTCC 59.353 44.000 0.00 0.00 40.91 4.30
1263 1354 2.216148 CCTGGAGCAGGTTCCTAGG 58.784 63.158 0.82 0.82 45.82 3.02
1363 1461 0.036388 TCCAAGAACTCGGCACATCC 60.036 55.000 0.00 0.00 0.00 3.51
1398 1503 1.902508 GATCTCTCACCAACCCACTGA 59.097 52.381 0.00 0.00 0.00 3.41
1399 1504 1.905215 AGATCTCTCACCAACCCACTG 59.095 52.381 0.00 0.00 0.00 3.66
1443 1564 6.985653 TCATGTCCCAAATGAAGGTAAAAA 57.014 33.333 0.00 0.00 31.17 1.94
1454 1575 8.061304 AGTTGGAGTAATTATCATGTCCCAAAT 58.939 33.333 0.00 0.00 33.60 2.32
1489 1610 1.068125 TGCATGCTGAATCTTGTGTGC 60.068 47.619 20.33 0.00 0.00 4.57
1536 1720 3.483196 CGAACAGAACACTGCAATTGTTG 59.517 43.478 16.15 7.84 37.31 3.33
1538 1722 2.541588 GCGAACAGAACACTGCAATTGT 60.542 45.455 7.40 0.00 35.31 2.71
1576 1783 3.244181 TGCAACAGAACATGAGCAGAGTA 60.244 43.478 0.00 0.00 38.12 2.59
1577 1784 2.149578 GCAACAGAACATGAGCAGAGT 58.850 47.619 0.00 0.00 34.87 3.24
1578 1785 2.148768 TGCAACAGAACATGAGCAGAG 58.851 47.619 0.00 0.00 38.12 3.35
1579 1786 2.259266 TGCAACAGAACATGAGCAGA 57.741 45.000 0.00 0.00 38.12 4.26
1580 1787 2.613730 CTGCAACAGAACATGAGCAG 57.386 50.000 0.00 0.00 46.63 4.24
1614 1821 0.165944 CAGCGACCCGTTCATTTGTC 59.834 55.000 0.00 0.00 0.00 3.18
1643 1861 1.541233 GCTGTGTGTCTTGTGCCTAGT 60.541 52.381 0.00 0.00 0.00 2.57
1677 1895 9.547753 GCTAAATCTTCCAGTATAAGTTGATCA 57.452 33.333 0.00 0.00 0.00 2.92
1679 1897 9.905713 TTGCTAAATCTTCCAGTATAAGTTGAT 57.094 29.630 0.00 0.00 0.00 2.57
1680 1898 9.905713 ATTGCTAAATCTTCCAGTATAAGTTGA 57.094 29.630 0.00 0.00 0.00 3.18
1702 2017 4.257267 AGCACTCCCAAGTTTTTATTGC 57.743 40.909 0.00 0.00 31.71 3.56
1703 2018 6.511605 GCAAAAGCACTCCCAAGTTTTTATTG 60.512 38.462 0.00 0.00 31.71 1.90
1704 2019 5.527214 GCAAAAGCACTCCCAAGTTTTTATT 59.473 36.000 0.00 0.00 31.71 1.40
1706 2021 4.438148 GCAAAAGCACTCCCAAGTTTTTA 58.562 39.130 0.00 0.00 31.71 1.52
1738 2059 3.541996 TGCTGTGAGTGAGAAACAGAA 57.458 42.857 6.24 0.00 43.22 3.02
1757 2079 6.891536 CTGTCTAAACATGCAGTGCAACTATG 60.892 42.308 23.90 17.98 43.62 2.23
1766 2288 5.316167 TCATTTCCTGTCTAAACATGCAGT 58.684 37.500 0.00 0.00 34.13 4.40
1767 2289 5.885230 TCATTTCCTGTCTAAACATGCAG 57.115 39.130 0.00 0.00 34.13 4.41
1768 2290 6.003326 TCTTCATTTCCTGTCTAAACATGCA 58.997 36.000 0.00 0.00 34.13 3.96
1769 2291 6.372659 TCTCTTCATTTCCTGTCTAAACATGC 59.627 38.462 0.00 0.00 34.13 4.06
1770 2292 7.912056 TCTCTTCATTTCCTGTCTAAACATG 57.088 36.000 0.00 0.00 34.13 3.21
1771 2293 8.160106 AGTTCTCTTCATTTCCTGTCTAAACAT 58.840 33.333 0.00 0.00 34.13 2.71
1772 2294 7.509546 AGTTCTCTTCATTTCCTGTCTAAACA 58.490 34.615 0.00 0.00 0.00 2.83
1773 2295 7.875554 AGAGTTCTCTTCATTTCCTGTCTAAAC 59.124 37.037 0.00 0.00 0.00 2.01
1779 2301 4.202398 TGCAGAGTTCTCTTCATTTCCTGT 60.202 41.667 0.00 0.00 0.00 4.00
1782 2304 4.335037 GGATGCAGAGTTCTCTTCATTTCC 59.665 45.833 14.01 10.04 0.00 3.13
1803 2325 1.001487 CTGCAGCATCAAAACAACGGA 60.001 47.619 0.00 0.00 0.00 4.69
1806 2328 1.142474 GGCTGCAGCATCAAAACAAC 58.858 50.000 37.63 14.35 44.36 3.32
1829 2351 2.457743 ATCGTGCGGGCAACAAGGTA 62.458 55.000 0.00 0.00 39.74 3.08
1841 2363 0.439985 CACACTCAAAGGATCGTGCG 59.560 55.000 0.00 0.00 0.00 5.34
1844 2366 1.291877 GCGCACACTCAAAGGATCGT 61.292 55.000 0.30 0.00 0.00 3.73
1855 2377 2.822255 AACACCAACGCGCACACT 60.822 55.556 5.73 0.00 0.00 3.55
1867 2389 1.174712 AGATGCACACAGCCAACACC 61.175 55.000 0.00 0.00 44.83 4.16
1868 2390 0.670162 AAGATGCACACAGCCAACAC 59.330 50.000 0.00 0.00 44.83 3.32
1873 2395 2.932614 CAGTACTAAGATGCACACAGCC 59.067 50.000 0.00 0.00 44.83 4.85
1875 2397 3.588955 TGCAGTACTAAGATGCACACAG 58.411 45.455 2.83 0.00 44.56 3.66
1886 2408 2.366533 CGTCCTCCTCTGCAGTACTAA 58.633 52.381 14.67 0.00 0.00 2.24
1891 2413 2.681778 CCCGTCCTCCTCTGCAGT 60.682 66.667 14.67 0.00 0.00 4.40
1892 2414 3.465403 CCCCGTCCTCCTCTGCAG 61.465 72.222 7.63 7.63 0.00 4.41
1901 2423 1.055551 TTAACACACACCCCCGTCCT 61.056 55.000 0.00 0.00 0.00 3.85
1902 2424 0.037160 ATTAACACACACCCCCGTCC 59.963 55.000 0.00 0.00 0.00 4.79
1905 2427 1.268352 CACAATTAACACACACCCCCG 59.732 52.381 0.00 0.00 0.00 5.73
1906 2428 2.312390 ACACAATTAACACACACCCCC 58.688 47.619 0.00 0.00 0.00 5.40
1907 2429 4.116238 CAAACACAATTAACACACACCCC 58.884 43.478 0.00 0.00 0.00 4.95
1908 2430 4.749976 ACAAACACAATTAACACACACCC 58.250 39.130 0.00 0.00 0.00 4.61
1909 2431 6.639279 GGATACAAACACAATTAACACACACC 59.361 38.462 0.00 0.00 0.00 4.16
1910 2432 6.639279 GGGATACAAACACAATTAACACACAC 59.361 38.462 0.00 0.00 39.74 3.82
1917 2439 7.578571 GCATCAAGGGGATACAAACACAATTAA 60.579 37.037 0.00 0.00 33.95 1.40
1919 2441 5.337491 GCATCAAGGGGATACAAACACAATT 60.337 40.000 0.00 0.00 33.95 2.32
1955 2477 4.951094 CCCGATCAAGGGTGGTTTAATTAA 59.049 41.667 0.00 0.00 46.38 1.40
1986 2574 3.287222 AGCAAGCAGTTTACAAAGGTGA 58.713 40.909 0.00 0.00 0.00 4.02
1987 2575 3.715628 AGCAAGCAGTTTACAAAGGTG 57.284 42.857 0.00 0.00 0.00 4.00
1988 2576 3.699038 TCAAGCAAGCAGTTTACAAAGGT 59.301 39.130 0.00 0.00 0.00 3.50
1991 2579 6.437928 CAGTATCAAGCAAGCAGTTTACAAA 58.562 36.000 0.00 0.00 0.00 2.83
1992 2580 5.048782 CCAGTATCAAGCAAGCAGTTTACAA 60.049 40.000 0.00 0.00 0.00 2.41
1994 2582 4.455877 ACCAGTATCAAGCAAGCAGTTTAC 59.544 41.667 0.00 0.00 0.00 2.01
2034 2628 0.671781 CCTTGAGGAGCTGGTTGTCG 60.672 60.000 0.00 0.00 37.39 4.35
2136 2730 1.499007 TCCTGGCCCTTGAACTTCTTT 59.501 47.619 0.00 0.00 0.00 2.52
2338 2932 0.531090 TCGTTGAGGAACCGGTTGTG 60.531 55.000 27.87 6.13 0.00 3.33
2374 2968 2.417516 CTCGTTGGCGATCCCGAT 59.582 61.111 0.00 0.00 46.80 4.18
2550 3144 2.639751 GCGAGATGAACAACACAACAC 58.360 47.619 0.00 0.00 0.00 3.32
2561 3155 0.457853 GGTGTAGCACGCGAGATGAA 60.458 55.000 15.93 0.00 34.83 2.57
2593 3187 2.355197 CACGGGCATAAGATCAACACA 58.645 47.619 0.00 0.00 0.00 3.72
2653 3248 2.703536 TGTACTGTGGTGTCAACTGGAT 59.296 45.455 0.00 0.00 0.00 3.41
2720 3315 3.367292 ATTGTGGTCAAAGGCAAATAGCG 60.367 43.478 0.00 0.00 39.67 4.26
2721 3316 3.658757 TTGTGGTCAAAGGCAAATAGC 57.341 42.857 0.00 0.00 44.65 2.97
2722 3317 4.931002 CCAATTGTGGTCAAAGGCAAATAG 59.069 41.667 4.43 0.00 40.42 1.73
2783 3379 8.514594 TGAAAGATGAAAGATGTGGTTCAATAC 58.485 33.333 0.00 0.00 37.31 1.89
2808 3404 6.259550 AGTTCTGGCTTTAGCTAAATGTTG 57.740 37.500 18.93 8.84 41.70 3.33
2892 3489 5.046910 ACGCCATACATCAAAGTTGAAAG 57.953 39.130 0.00 0.00 41.13 2.62
2893 3490 5.446143 AACGCCATACATCAAAGTTGAAA 57.554 34.783 0.00 0.00 41.13 2.69
2894 3491 5.446143 AAACGCCATACATCAAAGTTGAA 57.554 34.783 0.00 0.00 41.13 2.69
2895 3492 5.703592 AGTAAACGCCATACATCAAAGTTGA 59.296 36.000 0.00 0.00 42.14 3.18
2896 3493 5.794945 CAGTAAACGCCATACATCAAAGTTG 59.205 40.000 0.00 0.00 0.00 3.16
2897 3494 5.472137 ACAGTAAACGCCATACATCAAAGTT 59.528 36.000 0.00 0.00 0.00 2.66
2898 3495 5.001232 ACAGTAAACGCCATACATCAAAGT 58.999 37.500 0.00 0.00 0.00 2.66
2899 3496 5.323900 CACAGTAAACGCCATACATCAAAG 58.676 41.667 0.00 0.00 0.00 2.77
2900 3497 4.378978 GCACAGTAAACGCCATACATCAAA 60.379 41.667 0.00 0.00 0.00 2.69
2901 3498 3.126171 GCACAGTAAACGCCATACATCAA 59.874 43.478 0.00 0.00 0.00 2.57
2902 3499 2.675844 GCACAGTAAACGCCATACATCA 59.324 45.455 0.00 0.00 0.00 3.07
2988 3585 0.108041 GCGACCTTAACAATCCCCGA 60.108 55.000 0.00 0.00 0.00 5.14
3222 3819 3.072468 AGTAAGCGGCGCACCCTA 61.072 61.111 35.02 16.11 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.