Multiple sequence alignment - TraesCS2D01G142400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G142400 chr2D 100.000 3062 0 0 1 3062 83858361 83861422 0.000000e+00 5655.0
1 TraesCS2D01G142400 chr2B 93.961 2335 95 17 67 2377 135774518 135776830 0.000000e+00 3489.0
2 TraesCS2D01G142400 chr2B 94.271 192 6 3 2186 2377 135777878 135778064 3.860000e-74 289.0
3 TraesCS2D01G142400 chr2B 84.553 246 36 2 2510 2754 407196892 407197136 3.050000e-60 243.0
4 TraesCS2D01G142400 chr2A 93.056 2261 80 27 3 2237 84645226 84647435 0.000000e+00 3234.0
5 TraesCS2D01G142400 chr2A 94.375 160 3 2 2220 2375 84647457 84647614 1.100000e-59 241.0
6 TraesCS2D01G142400 chr2A 80.180 111 9 7 2383 2483 84647906 84648013 1.520000e-08 71.3
7 TraesCS2D01G142400 chr4D 81.020 922 127 25 1117 2029 246518113 246517231 0.000000e+00 689.0
8 TraesCS2D01G142400 chr4D 77.239 681 112 33 1360 2029 328185284 328184636 2.900000e-95 359.0
9 TraesCS2D01G142400 chr4D 85.776 232 30 3 2511 2740 502379981 502380211 3.050000e-60 243.0
10 TraesCS2D01G142400 chr4A 81.119 858 123 20 1181 2029 239578944 239578117 0.000000e+00 651.0
11 TraesCS2D01G142400 chr4A 75.201 871 159 45 1177 2029 142344623 142345454 2.900000e-95 359.0
12 TraesCS2D01G142400 chr4B 80.769 858 126 28 1181 2029 267669879 267670706 4.310000e-178 634.0
13 TraesCS2D01G142400 chr4B 74.799 869 160 43 1180 2029 407808266 407807438 1.360000e-88 337.0
14 TraesCS2D01G142400 chr1D 90.064 312 26 4 2733 3039 494483228 494483539 1.710000e-107 399.0
15 TraesCS2D01G142400 chr1D 85.043 234 30 5 2510 2740 441545029 441544798 1.840000e-57 233.0
16 TraesCS2D01G142400 chr1D 84.016 244 34 5 2497 2739 481307703 481307942 2.370000e-56 230.0
17 TraesCS2D01G142400 chr1D 86.207 58 2 4 469 524 270024925 270024978 1.190000e-04 58.4
18 TraesCS2D01G142400 chr7B 88.450 329 32 4 2735 3062 642281413 642281090 2.860000e-105 392.0
19 TraesCS2D01G142400 chr7B 84.549 233 33 3 2510 2740 739968715 739968484 8.540000e-56 228.0
20 TraesCS2D01G142400 chr7D 89.542 306 30 2 2735 3039 117875826 117876130 1.330000e-103 387.0
21 TraesCS2D01G142400 chr7D 83.761 234 32 4 2511 2740 111077675 111077906 1.850000e-52 217.0
22 TraesCS2D01G142400 chr6D 89.103 312 30 3 2732 3039 470263486 470263797 4.790000e-103 385.0
23 TraesCS2D01G142400 chr6D 89.068 311 27 5 2733 3039 17388103 17388410 2.230000e-101 379.0
24 TraesCS2D01G142400 chr7A 88.673 309 31 3 2735 3039 369578778 369578470 1.040000e-99 374.0
25 TraesCS2D01G142400 chr5D 88.673 309 26 7 2735 3039 445835208 445835511 4.820000e-98 368.0
26 TraesCS2D01G142400 chr5D 85.714 231 28 5 2513 2740 391744620 391744848 3.950000e-59 239.0
27 TraesCS2D01G142400 chr1B 87.164 335 29 9 2735 3062 648132371 648132044 4.820000e-98 368.0
28 TraesCS2D01G142400 chr1B 86.826 334 29 11 2735 3062 658966128 658965804 2.900000e-95 359.0
29 TraesCS2D01G142400 chr1A 86.900 229 25 5 2511 2735 98241773 98242000 5.070000e-63 252.0
30 TraesCS2D01G142400 chr3D 84.052 232 31 5 2510 2740 327434831 327435057 5.140000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G142400 chr2D 83858361 83861422 3061 False 5655.0 5655 100.000000 1 3062 1 chr2D.!!$F1 3061
1 TraesCS2D01G142400 chr2B 135774518 135778064 3546 False 1889.0 3489 94.116000 67 2377 2 chr2B.!!$F2 2310
2 TraesCS2D01G142400 chr2A 84645226 84648013 2787 False 1182.1 3234 89.203667 3 2483 3 chr2A.!!$F1 2480
3 TraesCS2D01G142400 chr4D 246517231 246518113 882 True 689.0 689 81.020000 1117 2029 1 chr4D.!!$R1 912
4 TraesCS2D01G142400 chr4D 328184636 328185284 648 True 359.0 359 77.239000 1360 2029 1 chr4D.!!$R2 669
5 TraesCS2D01G142400 chr4A 239578117 239578944 827 True 651.0 651 81.119000 1181 2029 1 chr4A.!!$R1 848
6 TraesCS2D01G142400 chr4A 142344623 142345454 831 False 359.0 359 75.201000 1177 2029 1 chr4A.!!$F1 852
7 TraesCS2D01G142400 chr4B 267669879 267670706 827 False 634.0 634 80.769000 1181 2029 1 chr4B.!!$F1 848
8 TraesCS2D01G142400 chr4B 407807438 407808266 828 True 337.0 337 74.799000 1180 2029 1 chr4B.!!$R1 849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.038251 TTGTGGCGCAAACAACAACA 60.038 45.0 20.16 2.42 32.71 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2156 1.011451 GTGCCAGCTCTCAGTCGAAC 61.011 60.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.897863 TTGCAAGGCCGCCATAGTTT 60.898 50.000 13.15 0.00 0.00 2.66
38 39 0.897863 TGCAAGGCCGCCATAGTTTT 60.898 50.000 13.15 0.00 0.00 2.43
51 52 2.941453 TAGTTTTGTGGCGCAAACAA 57.059 40.000 24.56 20.16 45.70 2.83
52 53 1.355005 AGTTTTGTGGCGCAAACAAC 58.645 45.000 24.56 20.13 45.70 3.32
53 54 1.071605 GTTTTGTGGCGCAAACAACA 58.928 45.000 24.56 16.07 45.70 3.33
54 55 1.461127 GTTTTGTGGCGCAAACAACAA 59.539 42.857 24.56 17.40 45.70 2.83
55 56 1.071605 TTTGTGGCGCAAACAACAAC 58.928 45.000 21.38 3.71 41.68 3.32
56 57 0.038251 TTGTGGCGCAAACAACAACA 60.038 45.000 20.16 2.42 32.71 3.33
57 58 0.734253 TGTGGCGCAAACAACAACAC 60.734 50.000 10.83 5.12 0.00 3.32
58 59 0.457681 GTGGCGCAAACAACAACACT 60.458 50.000 10.83 0.00 0.00 3.55
59 60 0.457509 TGGCGCAAACAACAACACTG 60.458 50.000 10.83 0.00 0.00 3.66
60 61 1.145162 GGCGCAAACAACAACACTGG 61.145 55.000 10.83 0.00 0.00 4.00
61 62 1.145162 GCGCAAACAACAACACTGGG 61.145 55.000 0.30 0.00 0.00 4.45
62 63 0.453793 CGCAAACAACAACACTGGGA 59.546 50.000 0.00 0.00 0.00 4.37
63 64 1.533756 CGCAAACAACAACACTGGGAG 60.534 52.381 0.00 0.00 0.00 4.30
64 65 1.802508 GCAAACAACAACACTGGGAGC 60.803 52.381 0.00 0.00 0.00 4.70
65 66 0.738389 AAACAACAACACTGGGAGCG 59.262 50.000 0.00 0.00 0.00 5.03
70 71 0.814010 ACAACACTGGGAGCGACAAC 60.814 55.000 0.00 0.00 0.00 3.32
80 81 1.400494 GGAGCGACAACACAAACAACT 59.600 47.619 0.00 0.00 0.00 3.16
83 84 1.854434 GCGACAACACAAACAACTCCG 60.854 52.381 0.00 0.00 0.00 4.63
84 85 1.395608 CGACAACACAAACAACTCCGT 59.604 47.619 0.00 0.00 0.00 4.69
87 88 1.132262 CAACACAAACAACTCCGTGCT 59.868 47.619 0.00 0.00 32.53 4.40
92 93 1.447317 AAACAACTCCGTGCTGCCTG 61.447 55.000 0.00 0.00 0.00 4.85
111 112 2.046314 CGCGGTGAAATCCCTGGT 60.046 61.111 0.00 0.00 0.00 4.00
112 113 2.398554 CGCGGTGAAATCCCTGGTG 61.399 63.158 0.00 0.00 0.00 4.17
152 153 1.794714 AGCGGAGAACATATCCCACT 58.205 50.000 0.00 0.00 32.86 4.00
185 195 3.458163 CCCGCTGAAGGCTACCGA 61.458 66.667 0.00 0.00 39.13 4.69
186 196 2.797278 CCCGCTGAAGGCTACCGAT 61.797 63.158 0.00 0.00 39.13 4.18
253 263 0.249615 CATGTCGCCATGGTCGAGAT 60.250 55.000 24.99 24.99 43.95 2.75
276 286 8.869109 AGATTTCTACCCACATTTGAATTTTCA 58.131 29.630 0.00 0.00 34.92 2.69
293 303 8.586744 TGAATTTTCATGAAGAAATGACATCCA 58.413 29.630 8.41 0.00 45.15 3.41
298 308 6.859017 TCATGAAGAAATGACATCCATTGTG 58.141 36.000 0.00 0.00 44.28 3.33
299 309 6.434965 TCATGAAGAAATGACATCCATTGTGT 59.565 34.615 0.00 0.00 44.28 3.72
587 599 6.010219 CCCTTCTGATTTTCCCTCTGTAAAA 58.990 40.000 0.00 0.00 0.00 1.52
652 676 0.905357 CCCTGTCCGATGTCCTTTCT 59.095 55.000 0.00 0.00 0.00 2.52
689 713 8.305317 GGAGTTGAAAGGCGTACTATATAATCT 58.695 37.037 0.00 0.00 0.00 2.40
727 751 2.126071 CCGTTGCGTGATCCGAGT 60.126 61.111 7.64 0.00 39.56 4.18
795 819 3.213402 GGAGGCTCTAGCTCGCGT 61.213 66.667 15.23 0.00 41.70 6.01
797 821 2.752238 AGGCTCTAGCTCGCGTGT 60.752 61.111 5.77 0.00 41.70 4.49
819 848 2.009208 CTCCTACCCTACCGGCCTCT 62.009 65.000 0.00 0.00 33.26 3.69
825 854 1.537669 CCTACCGGCCTCTAGTCCT 59.462 63.158 0.00 0.00 0.00 3.85
832 861 1.398958 GGCCTCTAGTCCTGCTCCTG 61.399 65.000 0.00 0.00 0.00 3.86
855 884 4.404691 GCAAGCTGCCAGGTTACT 57.595 55.556 9.10 0.00 37.42 2.24
856 885 2.175236 GCAAGCTGCCAGGTTACTC 58.825 57.895 9.10 0.00 37.42 2.59
857 886 1.639298 GCAAGCTGCCAGGTTACTCG 61.639 60.000 9.10 0.00 37.42 4.18
858 887 1.021390 CAAGCTGCCAGGTTACTCGG 61.021 60.000 9.10 0.00 33.64 4.63
859 888 2.804828 AAGCTGCCAGGTTACTCGGC 62.805 60.000 7.49 8.29 39.69 5.54
860 889 2.982130 CTGCCAGGTTACTCGGCT 59.018 61.111 14.52 0.00 39.85 5.52
872 901 1.081774 CTCGGCTAATCCTCGCTCG 60.082 63.158 0.00 0.00 0.00 5.03
932 962 2.203877 TAGCCACCCTTCCCGTGT 60.204 61.111 0.00 0.00 0.00 4.49
2113 2156 1.592669 GCCATGACCAGTCGATCGG 60.593 63.158 16.41 0.89 0.00 4.18
2134 2177 1.445754 CGACTGAGAGCTGGCACTG 60.446 63.158 0.00 0.00 0.00 3.66
2214 2257 2.839486 TCGGAGAGCAAGTTTGTCAT 57.161 45.000 0.00 0.00 0.00 3.06
2327 3650 9.685276 CATTTCTGCCCTTGGATTGTATATATA 57.315 33.333 0.00 0.00 0.00 0.86
2381 3704 0.517316 CGCAGGTTTTGTACTCCAGC 59.483 55.000 0.00 0.02 0.00 4.85
2387 3994 4.037923 CAGGTTTTGTACTCCAGCAAATGT 59.962 41.667 0.00 0.00 34.99 2.71
2391 3998 5.682943 TTTGTACTCCAGCAAATGTGTAC 57.317 39.130 0.00 0.00 37.41 2.90
2428 4035 2.995939 TGTACTAGGTACAGTGTCGACG 59.004 50.000 11.62 0.00 42.99 5.12
2440 4055 3.972502 CAGTGTCGACGCGATAATTCATA 59.027 43.478 22.41 0.00 38.42 2.15
2441 4056 3.973135 AGTGTCGACGCGATAATTCATAC 59.027 43.478 22.41 4.69 38.42 2.39
2442 4057 2.968655 TGTCGACGCGATAATTCATACG 59.031 45.455 15.93 2.68 38.42 3.06
2443 4058 2.969306 GTCGACGCGATAATTCATACGT 59.031 45.455 15.93 0.00 38.42 3.57
2444 4059 3.419922 GTCGACGCGATAATTCATACGTT 59.580 43.478 15.93 0.00 38.42 3.99
2446 4061 4.145243 TCGACGCGATAATTCATACGTTTC 59.855 41.667 15.93 0.00 33.31 2.78
2450 4065 6.408428 ACGCGATAATTCATACGTTTCTTTC 58.592 36.000 15.93 0.00 0.00 2.62
2453 4068 6.781426 GCGATAATTCATACGTTTCTTTCTCG 59.219 38.462 0.00 0.00 0.00 4.04
2454 4069 7.305820 GCGATAATTCATACGTTTCTTTCTCGA 60.306 37.037 0.00 0.00 0.00 4.04
2455 4070 8.529102 CGATAATTCATACGTTTCTTTCTCGAA 58.471 33.333 0.00 0.00 0.00 3.71
2460 4075 7.416154 TCATACGTTTCTTTCTCGAAAATGT 57.584 32.000 0.00 8.86 34.93 2.71
2468 4083 6.060028 TCTTTCTCGAAAATGTGAGGTTTG 57.940 37.500 0.00 0.00 33.00 2.93
2469 4084 5.588648 TCTTTCTCGAAAATGTGAGGTTTGT 59.411 36.000 0.00 0.00 33.00 2.83
2470 4085 5.828299 TTCTCGAAAATGTGAGGTTTGTT 57.172 34.783 0.00 0.00 33.00 2.83
2471 4086 5.418310 TCTCGAAAATGTGAGGTTTGTTC 57.582 39.130 0.00 0.00 33.00 3.18
2472 4087 5.123227 TCTCGAAAATGTGAGGTTTGTTCT 58.877 37.500 0.00 0.00 33.00 3.01
2485 4100 7.745620 GAGGTTTGTTCTCCTCTGATTTAAA 57.254 36.000 4.24 0.00 44.68 1.52
2486 4101 7.751768 AGGTTTGTTCTCCTCTGATTTAAAG 57.248 36.000 0.00 0.00 0.00 1.85
2487 4102 6.207614 AGGTTTGTTCTCCTCTGATTTAAAGC 59.792 38.462 0.00 0.00 0.00 3.51
2488 4103 6.016276 GGTTTGTTCTCCTCTGATTTAAAGCA 60.016 38.462 5.94 5.94 0.00 3.91
2489 4104 6.808008 TTGTTCTCCTCTGATTTAAAGCAG 57.192 37.500 24.21 24.21 43.47 4.24
2497 4112 4.096732 CTGATTTAAAGCAGAAACCGGG 57.903 45.455 25.60 0.00 44.83 5.73
2498 4113 3.492337 TGATTTAAAGCAGAAACCGGGT 58.508 40.909 6.32 0.00 0.00 5.28
2499 4114 3.254657 TGATTTAAAGCAGAAACCGGGTG 59.745 43.478 6.32 0.00 0.00 4.61
2500 4115 1.611519 TTAAAGCAGAAACCGGGTGG 58.388 50.000 6.32 0.00 42.84 4.61
2501 4116 0.766131 TAAAGCAGAAACCGGGTGGA 59.234 50.000 6.32 0.00 39.21 4.02
2502 4117 0.822121 AAAGCAGAAACCGGGTGGAC 60.822 55.000 6.32 0.00 39.21 4.02
2503 4118 1.705997 AAGCAGAAACCGGGTGGACT 61.706 55.000 6.32 0.00 39.21 3.85
2504 4119 0.834687 AGCAGAAACCGGGTGGACTA 60.835 55.000 6.32 0.00 39.21 2.59
2505 4120 0.672711 GCAGAAACCGGGTGGACTAC 60.673 60.000 6.32 0.00 39.21 2.73
2506 4121 0.682852 CAGAAACCGGGTGGACTACA 59.317 55.000 6.32 0.00 39.21 2.74
2507 4122 1.071071 CAGAAACCGGGTGGACTACAA 59.929 52.381 6.32 0.00 39.21 2.41
2508 4123 1.770061 AGAAACCGGGTGGACTACAAA 59.230 47.619 6.32 0.00 39.21 2.83
2509 4124 2.374170 AGAAACCGGGTGGACTACAAAT 59.626 45.455 6.32 0.00 39.21 2.32
2510 4125 3.583966 AGAAACCGGGTGGACTACAAATA 59.416 43.478 6.32 0.00 39.21 1.40
2511 4126 3.622166 AACCGGGTGGACTACAAATAG 57.378 47.619 6.32 0.00 39.21 1.73
2512 4127 2.823959 ACCGGGTGGACTACAAATAGA 58.176 47.619 6.32 0.00 39.21 1.98
2513 4128 2.764572 ACCGGGTGGACTACAAATAGAG 59.235 50.000 6.32 0.00 39.21 2.43
2514 4129 2.483188 CCGGGTGGACTACAAATAGAGC 60.483 54.545 0.00 0.00 37.49 4.09
2515 4130 2.167693 CGGGTGGACTACAAATAGAGCA 59.832 50.000 0.00 0.00 32.23 4.26
2516 4131 3.181465 CGGGTGGACTACAAATAGAGCAT 60.181 47.826 0.00 0.00 32.23 3.79
2517 4132 4.381411 GGGTGGACTACAAATAGAGCATC 58.619 47.826 0.00 0.00 32.23 3.91
2530 4145 2.899339 GCATCTCCAAGAGGCGCC 60.899 66.667 21.89 21.89 42.34 6.53
2531 4146 2.203126 CATCTCCAAGAGGCGCCC 60.203 66.667 26.15 15.34 33.74 6.13
2532 4147 2.688666 ATCTCCAAGAGGCGCCCA 60.689 61.111 26.15 0.00 33.74 5.36
2533 4148 2.300967 ATCTCCAAGAGGCGCCCAA 61.301 57.895 26.15 0.88 33.74 4.12
2534 4149 1.852157 ATCTCCAAGAGGCGCCCAAA 61.852 55.000 26.15 1.70 33.74 3.28
2535 4150 1.603455 CTCCAAGAGGCGCCCAAAA 60.603 57.895 26.15 2.93 33.74 2.44
2536 4151 1.152652 TCCAAGAGGCGCCCAAAAA 60.153 52.632 26.15 1.08 33.74 1.94
2537 4152 1.006220 CCAAGAGGCGCCCAAAAAC 60.006 57.895 26.15 8.02 0.00 2.43
2538 4153 1.463553 CCAAGAGGCGCCCAAAAACT 61.464 55.000 26.15 10.33 0.00 2.66
2539 4154 0.318955 CAAGAGGCGCCCAAAAACTG 60.319 55.000 26.15 7.36 0.00 3.16
2540 4155 1.463553 AAGAGGCGCCCAAAAACTGG 61.464 55.000 26.15 0.00 45.97 4.00
2547 4162 3.601685 CCAAAAACTGGGCCGCGT 61.602 61.111 4.92 0.00 42.17 6.01
2548 4163 2.262303 CCAAAAACTGGGCCGCGTA 61.262 57.895 4.92 0.00 42.17 4.42
2549 4164 1.081708 CAAAAACTGGGCCGCGTAC 60.082 57.895 4.92 0.00 0.00 3.67
2550 4165 1.228033 AAAAACTGGGCCGCGTACT 60.228 52.632 4.92 0.00 0.00 2.73
2551 4166 0.035176 AAAAACTGGGCCGCGTACTA 59.965 50.000 4.92 0.00 0.00 1.82
2552 4167 0.035176 AAAACTGGGCCGCGTACTAA 59.965 50.000 4.92 0.00 0.00 2.24
2553 4168 0.035176 AAACTGGGCCGCGTACTAAA 59.965 50.000 4.92 0.00 0.00 1.85
2554 4169 0.251073 AACTGGGCCGCGTACTAAAT 59.749 50.000 4.92 0.00 0.00 1.40
2555 4170 0.251073 ACTGGGCCGCGTACTAAATT 59.749 50.000 4.92 0.00 0.00 1.82
2556 4171 1.339342 ACTGGGCCGCGTACTAAATTT 60.339 47.619 4.92 0.00 0.00 1.82
2557 4172 1.741145 CTGGGCCGCGTACTAAATTTT 59.259 47.619 4.92 0.00 0.00 1.82
2558 4173 2.937799 CTGGGCCGCGTACTAAATTTTA 59.062 45.455 4.92 0.00 0.00 1.52
2559 4174 2.937799 TGGGCCGCGTACTAAATTTTAG 59.062 45.455 13.44 13.44 0.00 1.85
2560 4175 2.288729 GGGCCGCGTACTAAATTTTAGG 59.711 50.000 18.05 3.92 0.00 2.69
2561 4176 2.938451 GGCCGCGTACTAAATTTTAGGT 59.062 45.455 18.05 8.23 0.00 3.08
2562 4177 3.374988 GGCCGCGTACTAAATTTTAGGTT 59.625 43.478 18.05 3.50 0.00 3.50
2563 4178 4.142622 GGCCGCGTACTAAATTTTAGGTTT 60.143 41.667 18.05 2.88 0.00 3.27
2564 4179 5.393124 GCCGCGTACTAAATTTTAGGTTTT 58.607 37.500 18.05 2.58 0.00 2.43
2565 4180 5.858049 GCCGCGTACTAAATTTTAGGTTTTT 59.142 36.000 18.05 2.26 0.00 1.94
2582 4197 2.288961 TTTTGACGTCGGATAGCTCC 57.711 50.000 11.62 0.00 38.29 4.70
2583 4198 1.179152 TTTGACGTCGGATAGCTCCA 58.821 50.000 11.62 0.00 42.19 3.86
2584 4199 1.179152 TTGACGTCGGATAGCTCCAA 58.821 50.000 11.62 0.00 42.19 3.53
2585 4200 0.454600 TGACGTCGGATAGCTCCAAC 59.545 55.000 11.62 0.00 42.19 3.77
2586 4201 0.454600 GACGTCGGATAGCTCCAACA 59.545 55.000 0.00 0.00 42.19 3.33
2587 4202 0.892755 ACGTCGGATAGCTCCAACAA 59.107 50.000 0.00 0.00 42.19 2.83
2588 4203 1.274167 ACGTCGGATAGCTCCAACAAA 59.726 47.619 0.00 0.00 42.19 2.83
2589 4204 2.289195 ACGTCGGATAGCTCCAACAAAA 60.289 45.455 0.00 0.00 42.19 2.44
2590 4205 2.348666 CGTCGGATAGCTCCAACAAAAG 59.651 50.000 0.00 0.00 42.19 2.27
2591 4206 2.096013 GTCGGATAGCTCCAACAAAAGC 59.904 50.000 0.00 0.00 42.19 3.51
2599 4214 4.682787 AGCTCCAACAAAAGCTGTAAAAC 58.317 39.130 0.00 0.00 46.78 2.43
2600 4215 4.159506 AGCTCCAACAAAAGCTGTAAAACA 59.840 37.500 0.00 0.00 46.78 2.83
2601 4216 5.679638 AGCTCCAACAAAAGCTGTAAAACAG 60.680 40.000 2.65 2.65 46.78 3.16
2608 4223 4.115287 CTGTAAAACAGTGCGCGC 57.885 55.556 27.26 27.26 41.19 6.86
2609 4224 1.788203 CTGTAAAACAGTGCGCGCG 60.788 57.895 28.44 28.44 41.19 6.86
2610 4225 2.247267 GTAAAACAGTGCGCGCGT 59.753 55.556 32.35 15.93 0.00 6.01
2611 4226 1.213733 TGTAAAACAGTGCGCGCGTA 61.214 50.000 32.35 26.20 0.00 4.42
2612 4227 0.111178 GTAAAACAGTGCGCGCGTAA 60.111 50.000 32.35 17.75 0.00 3.18
2613 4228 0.580578 TAAAACAGTGCGCGCGTAAA 59.419 45.000 32.35 14.92 0.00 2.01
2614 4229 0.248134 AAAACAGTGCGCGCGTAAAA 60.248 45.000 32.35 12.14 0.00 1.52
2615 4230 0.248134 AAACAGTGCGCGCGTAAAAA 60.248 45.000 32.35 4.09 0.00 1.94
2633 4248 1.602191 AAAAATTTAGACGCGCGCTG 58.398 45.000 32.58 23.88 0.00 5.18
2634 4249 0.793861 AAAATTTAGACGCGCGCTGA 59.206 45.000 32.58 21.11 0.00 4.26
2635 4250 0.793861 AAATTTAGACGCGCGCTGAA 59.206 45.000 32.58 27.58 0.00 3.02
2636 4251 0.793861 AATTTAGACGCGCGCTGAAA 59.206 45.000 32.58 25.50 0.00 2.69
2637 4252 0.793861 ATTTAGACGCGCGCTGAAAA 59.206 45.000 32.58 23.78 0.00 2.29
2638 4253 0.582482 TTTAGACGCGCGCTGAAAAA 59.418 45.000 32.58 20.15 0.00 1.94
2639 4254 0.793861 TTAGACGCGCGCTGAAAAAT 59.206 45.000 32.58 7.51 0.00 1.82
2640 4255 0.094558 TAGACGCGCGCTGAAAAATG 59.905 50.000 32.58 13.34 0.00 2.32
2641 4256 2.767919 GACGCGCGCTGAAAAATGC 61.768 57.895 32.58 2.40 0.00 3.56
2642 4257 2.502510 CGCGCGCTGAAAAATGCT 60.503 55.556 30.48 0.00 0.00 3.79
2643 4258 1.225991 CGCGCGCTGAAAAATGCTA 60.226 52.632 30.48 0.00 0.00 3.49
2644 4259 0.589729 CGCGCGCTGAAAAATGCTAT 60.590 50.000 30.48 0.00 0.00 2.97
2645 4260 1.115639 GCGCGCTGAAAAATGCTATC 58.884 50.000 26.67 0.00 0.00 2.08
2646 4261 1.531677 GCGCGCTGAAAAATGCTATCA 60.532 47.619 26.67 0.00 0.00 2.15
2647 4262 2.784505 CGCGCTGAAAAATGCTATCAA 58.215 42.857 5.56 0.00 0.00 2.57
2648 4263 3.170505 CGCGCTGAAAAATGCTATCAAA 58.829 40.909 5.56 0.00 0.00 2.69
2649 4264 3.607641 CGCGCTGAAAAATGCTATCAAAA 59.392 39.130 5.56 0.00 0.00 2.44
2650 4265 4.489206 CGCGCTGAAAAATGCTATCAAAAC 60.489 41.667 5.56 0.00 0.00 2.43
2651 4266 4.201618 GCGCTGAAAAATGCTATCAAAACC 60.202 41.667 0.00 0.00 0.00 3.27
2652 4267 4.922692 CGCTGAAAAATGCTATCAAAACCA 59.077 37.500 0.00 0.00 0.00 3.67
2653 4268 5.061311 CGCTGAAAAATGCTATCAAAACCAG 59.939 40.000 0.00 0.00 0.00 4.00
2654 4269 5.928264 GCTGAAAAATGCTATCAAAACCAGT 59.072 36.000 0.00 0.00 0.00 4.00
2655 4270 7.090173 GCTGAAAAATGCTATCAAAACCAGTA 58.910 34.615 0.00 0.00 0.00 2.74
2656 4271 7.598493 GCTGAAAAATGCTATCAAAACCAGTAA 59.402 33.333 0.00 0.00 0.00 2.24
2657 4272 9.474920 CTGAAAAATGCTATCAAAACCAGTAAA 57.525 29.630 0.00 0.00 0.00 2.01
2658 4273 9.995003 TGAAAAATGCTATCAAAACCAGTAAAT 57.005 25.926 0.00 0.00 0.00 1.40
2662 4277 9.995003 AAATGCTATCAAAACCAGTAAATTTGA 57.005 25.926 0.00 3.02 44.44 2.69
2663 4278 9.643693 AATGCTATCAAAACCAGTAAATTTGAG 57.356 29.630 0.00 0.00 43.81 3.02
2664 4279 7.601856 TGCTATCAAAACCAGTAAATTTGAGG 58.398 34.615 0.00 2.54 43.81 3.86
2665 4280 6.531594 GCTATCAAAACCAGTAAATTTGAGGC 59.468 38.462 0.00 8.56 43.81 4.70
2666 4281 4.865776 TCAAAACCAGTAAATTTGAGGCG 58.134 39.130 0.00 0.00 37.95 5.52
2667 4282 3.297830 AAACCAGTAAATTTGAGGCGC 57.702 42.857 0.00 0.00 0.00 6.53
2668 4283 1.173913 ACCAGTAAATTTGAGGCGCC 58.826 50.000 21.89 21.89 0.00 6.53
2669 4284 0.098728 CCAGTAAATTTGAGGCGCCG 59.901 55.000 23.20 1.04 0.00 6.46
2670 4285 0.098728 CAGTAAATTTGAGGCGCCGG 59.901 55.000 23.20 0.00 0.00 6.13
2671 4286 0.035820 AGTAAATTTGAGGCGCCGGA 60.036 50.000 23.20 8.86 0.00 5.14
2672 4287 1.021968 GTAAATTTGAGGCGCCGGAT 58.978 50.000 23.20 10.90 0.00 4.18
2673 4288 1.404035 GTAAATTTGAGGCGCCGGATT 59.596 47.619 23.20 16.29 0.00 3.01
2674 4289 0.173255 AAATTTGAGGCGCCGGATTG 59.827 50.000 23.20 0.00 0.00 2.67
2675 4290 2.283472 AATTTGAGGCGCCGGATTGC 62.283 55.000 23.20 5.21 0.00 3.56
2691 4306 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
2692 4307 1.511043 GCGCGCGCTTCACAATTTA 60.511 52.632 44.38 0.00 38.26 1.40
2693 4308 1.720330 GCGCGCGCTTCACAATTTAC 61.720 55.000 44.38 13.65 38.26 2.01
2694 4309 0.451957 CGCGCGCTTCACAATTTACA 60.452 50.000 30.48 0.00 0.00 2.41
2695 4310 0.974836 GCGCGCTTCACAATTTACAC 59.025 50.000 26.67 0.00 0.00 2.90
2696 4311 1.399727 GCGCGCTTCACAATTTACACT 60.400 47.619 26.67 0.00 0.00 3.55
2697 4312 2.233355 CGCGCTTCACAATTTACACTG 58.767 47.619 5.56 0.00 0.00 3.66
2698 4313 1.978782 GCGCTTCACAATTTACACTGC 59.021 47.619 0.00 0.00 0.00 4.40
2699 4314 2.233355 CGCTTCACAATTTACACTGCG 58.767 47.619 0.00 0.00 35.22 5.18
2700 4315 2.349438 CGCTTCACAATTTACACTGCGT 60.349 45.455 0.00 0.00 36.78 5.24
2701 4316 2.973224 GCTTCACAATTTACACTGCGTG 59.027 45.455 7.07 7.07 39.75 5.34
2703 4318 4.597079 CTTCACAATTTACACTGCGTGTT 58.403 39.130 17.12 0.33 45.08 3.32
2704 4319 4.203950 TCACAATTTACACTGCGTGTTC 57.796 40.909 17.12 0.00 45.08 3.18
2705 4320 3.874543 TCACAATTTACACTGCGTGTTCT 59.125 39.130 17.12 3.25 45.08 3.01
2706 4321 5.051153 TCACAATTTACACTGCGTGTTCTA 58.949 37.500 17.12 6.28 45.08 2.10
2707 4322 5.699001 TCACAATTTACACTGCGTGTTCTAT 59.301 36.000 17.12 7.88 45.08 1.98
2708 4323 6.203915 TCACAATTTACACTGCGTGTTCTATT 59.796 34.615 17.12 11.98 45.08 1.73
2709 4324 7.385478 TCACAATTTACACTGCGTGTTCTATTA 59.615 33.333 17.12 0.00 45.08 0.98
2710 4325 7.688167 CACAATTTACACTGCGTGTTCTATTAG 59.312 37.037 17.12 11.55 45.08 1.73
2711 4326 5.773239 TTTACACTGCGTGTTCTATTAGC 57.227 39.130 17.12 0.00 45.08 3.09
2712 4327 2.618053 ACACTGCGTGTTCTATTAGCC 58.382 47.619 8.25 0.00 45.08 3.93
2713 4328 1.588404 CACTGCGTGTTCTATTAGCCG 59.412 52.381 1.24 0.00 0.00 5.52
2714 4329 0.577269 CTGCGTGTTCTATTAGCCGC 59.423 55.000 0.00 0.00 41.34 6.53
2715 4330 2.673074 GCGTGTTCTATTAGCCGCA 58.327 52.632 0.00 0.00 40.72 5.69
2716 4331 0.300789 GCGTGTTCTATTAGCCGCAC 59.699 55.000 0.00 6.88 40.72 5.34
2717 4332 0.570734 CGTGTTCTATTAGCCGCACG 59.429 55.000 14.82 14.82 42.39 5.34
2718 4333 1.636988 GTGTTCTATTAGCCGCACGT 58.363 50.000 0.00 0.00 0.00 4.49
2719 4334 1.997606 GTGTTCTATTAGCCGCACGTT 59.002 47.619 0.00 0.00 0.00 3.99
2720 4335 2.414138 GTGTTCTATTAGCCGCACGTTT 59.586 45.455 0.00 0.00 0.00 3.60
2721 4336 3.068560 TGTTCTATTAGCCGCACGTTTT 58.931 40.909 0.00 0.00 0.00 2.43
2722 4337 3.120477 TGTTCTATTAGCCGCACGTTTTG 60.120 43.478 0.00 0.00 0.00 2.44
2723 4338 2.004017 TCTATTAGCCGCACGTTTTGG 58.996 47.619 0.00 0.00 0.00 3.28
2724 4339 1.063469 CTATTAGCCGCACGTTTTGGG 59.937 52.381 0.00 0.00 37.91 4.12
2725 4340 2.207788 ATTAGCCGCACGTTTTGGGC 62.208 55.000 7.62 7.62 40.24 5.36
2727 4342 4.356442 GCCGCACGTTTTGGGCAT 62.356 61.111 10.16 0.00 39.89 4.40
2728 4343 2.126502 CCGCACGTTTTGGGCATC 60.127 61.111 0.00 0.00 36.82 3.91
2729 4344 2.625823 CCGCACGTTTTGGGCATCT 61.626 57.895 0.00 0.00 36.82 2.90
2730 4345 1.442520 CGCACGTTTTGGGCATCTG 60.443 57.895 0.00 0.00 0.00 2.90
2731 4346 1.734117 GCACGTTTTGGGCATCTGC 60.734 57.895 0.00 0.00 41.14 4.26
2732 4347 1.959085 CACGTTTTGGGCATCTGCT 59.041 52.632 1.70 0.00 41.70 4.24
2733 4348 1.164411 CACGTTTTGGGCATCTGCTA 58.836 50.000 1.70 0.00 41.70 3.49
2734 4349 1.539388 CACGTTTTGGGCATCTGCTAA 59.461 47.619 1.70 0.00 41.70 3.09
2735 4350 1.812571 ACGTTTTGGGCATCTGCTAAG 59.187 47.619 1.70 0.00 41.70 2.18
2736 4351 2.083774 CGTTTTGGGCATCTGCTAAGA 58.916 47.619 1.70 0.00 41.70 2.10
2737 4352 2.096496 CGTTTTGGGCATCTGCTAAGAG 59.904 50.000 1.70 0.00 41.70 2.85
2738 4353 1.755179 TTTGGGCATCTGCTAAGAGC 58.245 50.000 1.70 0.00 42.82 4.09
2752 4367 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
2753 4368 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
2754 4369 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
2755 4370 2.825836 CATCTCCAACAGCCGCCC 60.826 66.667 0.00 0.00 0.00 6.13
2756 4371 3.329889 ATCTCCAACAGCCGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
2757 4372 2.905996 ATCTCCAACAGCCGCCCAA 61.906 57.895 0.00 0.00 0.00 4.12
2758 4373 3.365265 CTCCAACAGCCGCCCAAC 61.365 66.667 0.00 0.00 0.00 3.77
2776 4391 4.859784 GCGTGGCGTGCTAAAAAT 57.140 50.000 0.00 0.00 0.00 1.82
2777 4392 2.637155 GCGTGGCGTGCTAAAAATC 58.363 52.632 0.00 0.00 0.00 2.17
2778 4393 0.109964 GCGTGGCGTGCTAAAAATCA 60.110 50.000 0.00 0.00 0.00 2.57
2779 4394 1.882198 CGTGGCGTGCTAAAAATCAG 58.118 50.000 0.00 0.00 0.00 2.90
2780 4395 1.196808 CGTGGCGTGCTAAAAATCAGT 59.803 47.619 0.00 0.00 0.00 3.41
2781 4396 2.350388 CGTGGCGTGCTAAAAATCAGTT 60.350 45.455 0.00 0.00 0.00 3.16
2782 4397 3.638484 GTGGCGTGCTAAAAATCAGTTT 58.362 40.909 0.00 0.00 0.00 2.66
2783 4398 3.425193 GTGGCGTGCTAAAAATCAGTTTG 59.575 43.478 0.00 0.00 0.00 2.93
2784 4399 2.408368 GGCGTGCTAAAAATCAGTTTGC 59.592 45.455 0.00 0.00 0.00 3.68
2785 4400 3.049206 GCGTGCTAAAAATCAGTTTGCA 58.951 40.909 0.00 0.00 0.00 4.08
2786 4401 3.120121 GCGTGCTAAAAATCAGTTTGCAG 59.880 43.478 0.00 0.00 30.54 4.41
2787 4402 3.120121 CGTGCTAAAAATCAGTTTGCAGC 59.880 43.478 0.00 0.00 38.05 5.25
2788 4403 4.050553 GTGCTAAAAATCAGTTTGCAGCA 58.949 39.130 3.65 3.65 41.93 4.41
2789 4404 4.050553 TGCTAAAAATCAGTTTGCAGCAC 58.949 39.130 0.00 0.00 40.51 4.40
2790 4405 3.120121 GCTAAAAATCAGTTTGCAGCACG 59.880 43.478 0.00 0.00 37.73 5.34
2791 4406 1.490621 AAAATCAGTTTGCAGCACGC 58.509 45.000 0.00 0.00 42.89 5.34
2792 4407 0.318955 AAATCAGTTTGCAGCACGCC 60.319 50.000 0.00 0.00 41.33 5.68
2793 4408 2.462255 AATCAGTTTGCAGCACGCCG 62.462 55.000 0.00 0.00 41.33 6.46
2794 4409 3.648982 CAGTTTGCAGCACGCCGA 61.649 61.111 0.00 0.00 41.33 5.54
2795 4410 2.669569 AGTTTGCAGCACGCCGAT 60.670 55.556 0.00 0.00 41.33 4.18
2796 4411 2.202349 GTTTGCAGCACGCCGATC 60.202 61.111 0.00 0.00 41.33 3.69
2797 4412 3.787676 TTTGCAGCACGCCGATCG 61.788 61.111 8.51 8.51 41.33 3.69
2801 4416 4.569023 CAGCACGCCGATCGCCTA 62.569 66.667 10.32 0.00 43.23 3.93
2802 4417 4.570663 AGCACGCCGATCGCCTAC 62.571 66.667 10.32 0.00 43.23 3.18
2803 4418 4.570663 GCACGCCGATCGCCTACT 62.571 66.667 10.32 0.00 43.23 2.57
2804 4419 2.104331 CACGCCGATCGCCTACTT 59.896 61.111 10.32 0.00 43.23 2.24
2805 4420 1.518572 CACGCCGATCGCCTACTTT 60.519 57.895 10.32 0.00 43.23 2.66
2806 4421 0.248743 CACGCCGATCGCCTACTTTA 60.249 55.000 10.32 0.00 43.23 1.85
2807 4422 0.457035 ACGCCGATCGCCTACTTTAA 59.543 50.000 10.32 0.00 43.23 1.52
2808 4423 0.850856 CGCCGATCGCCTACTTTAAC 59.149 55.000 10.32 0.00 0.00 2.01
2809 4424 0.850856 GCCGATCGCCTACTTTAACG 59.149 55.000 10.32 0.00 0.00 3.18
2810 4425 0.850856 CCGATCGCCTACTTTAACGC 59.149 55.000 10.32 0.00 0.00 4.84
2811 4426 1.552226 CGATCGCCTACTTTAACGCA 58.448 50.000 0.26 0.00 0.00 5.24
2812 4427 1.517276 CGATCGCCTACTTTAACGCAG 59.483 52.381 0.26 0.00 0.00 5.18
2813 4428 1.258197 GATCGCCTACTTTAACGCAGC 59.742 52.381 0.00 0.00 0.00 5.25
2814 4429 1.074319 TCGCCTACTTTAACGCAGCG 61.074 55.000 14.82 14.82 43.20 5.18
2815 4430 1.713830 GCCTACTTTAACGCAGCGG 59.286 57.895 21.15 2.73 0.00 5.52
2816 4431 1.702491 GCCTACTTTAACGCAGCGGG 61.702 60.000 21.15 8.96 0.00 6.13
2817 4432 0.108520 CCTACTTTAACGCAGCGGGA 60.109 55.000 21.15 2.80 0.00 5.14
2818 4433 1.278238 CTACTTTAACGCAGCGGGAG 58.722 55.000 21.15 12.91 0.00 4.30
2849 4464 1.128513 GCGGCCGCAATAAATTTAGC 58.871 50.000 43.55 10.24 41.49 3.09
2854 4469 0.421994 CGCAATAAATTTAGCGCGCG 59.578 50.000 28.44 28.44 43.80 6.86
2855 4470 0.156651 GCAATAAATTTAGCGCGCGC 59.843 50.000 45.10 45.10 42.33 6.86
2872 4487 4.577246 CGTAGCTCCAGGAGGCGC 62.577 72.222 18.83 0.00 46.09 6.53
2877 4492 3.838271 CTCCAGGAGGCGCGCTAA 61.838 66.667 32.29 7.65 33.74 3.09
2878 4493 3.371097 CTCCAGGAGGCGCGCTAAA 62.371 63.158 32.29 8.73 33.74 1.85
2879 4494 2.435938 CCAGGAGGCGCGCTAAAA 60.436 61.111 32.29 0.00 0.00 1.52
2880 4495 1.819632 CCAGGAGGCGCGCTAAAAT 60.820 57.895 32.29 12.01 0.00 1.82
2881 4496 1.353103 CAGGAGGCGCGCTAAAATG 59.647 57.895 32.29 18.81 0.00 2.32
2882 4497 2.024729 GGAGGCGCGCTAAAATGC 59.975 61.111 32.29 12.47 0.00 3.56
2883 4498 2.760159 GGAGGCGCGCTAAAATGCA 61.760 57.895 32.29 0.00 0.00 3.96
2884 4499 1.297893 GAGGCGCGCTAAAATGCAG 60.298 57.895 32.29 0.00 0.00 4.41
2885 4500 2.951227 GGCGCGCTAAAATGCAGC 60.951 61.111 32.29 5.91 36.17 5.25
2890 4505 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
2891 4506 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
2918 4533 3.926497 GCGCATGCCATATGTTGC 58.074 55.556 13.15 2.85 33.98 4.17
2919 4534 1.066093 GCGCATGCCATATGTTGCA 59.934 52.632 13.15 13.76 42.52 4.08
2921 4536 1.870580 GCGCATGCCATATGTTGCATT 60.871 47.619 13.15 1.52 45.52 3.56
2922 4537 2.475818 CGCATGCCATATGTTGCATTT 58.524 42.857 13.15 0.00 45.52 2.32
2923 4538 2.867368 CGCATGCCATATGTTGCATTTT 59.133 40.909 13.15 0.00 45.52 1.82
2924 4539 3.302805 CGCATGCCATATGTTGCATTTTG 60.303 43.478 13.15 8.52 45.52 2.44
2925 4540 3.002862 GCATGCCATATGTTGCATTTTGG 59.997 43.478 14.55 7.02 45.52 3.28
2926 4541 4.443621 CATGCCATATGTTGCATTTTGGA 58.556 39.130 14.55 0.00 45.52 3.53
2927 4542 3.859443 TGCCATATGTTGCATTTTGGAC 58.141 40.909 1.24 0.00 31.31 4.02
2928 4543 3.260128 TGCCATATGTTGCATTTTGGACA 59.740 39.130 1.24 0.00 31.31 4.02
2929 4544 3.618150 GCCATATGTTGCATTTTGGACAC 59.382 43.478 1.24 0.00 0.00 3.67
2930 4545 4.818642 CCATATGTTGCATTTTGGACACA 58.181 39.130 1.24 0.00 0.00 3.72
2931 4546 5.236282 CCATATGTTGCATTTTGGACACAA 58.764 37.500 1.24 0.00 34.07 3.33
2932 4547 5.699915 CCATATGTTGCATTTTGGACACAAA 59.300 36.000 1.24 0.00 44.40 2.83
2945 4560 6.601741 TTGGACACAAAATGAATTTCAAGC 57.398 33.333 2.68 0.00 32.66 4.01
2946 4561 5.668471 TGGACACAAAATGAATTTCAAGCA 58.332 33.333 2.68 0.00 0.00 3.91
2947 4562 6.289834 TGGACACAAAATGAATTTCAAGCAT 58.710 32.000 2.68 0.00 0.00 3.79
2948 4563 6.424509 TGGACACAAAATGAATTTCAAGCATC 59.575 34.615 2.68 0.00 0.00 3.91
2949 4564 6.424509 GGACACAAAATGAATTTCAAGCATCA 59.575 34.615 2.68 0.00 0.00 3.07
2950 4565 7.041916 GGACACAAAATGAATTTCAAGCATCAA 60.042 33.333 2.68 0.00 0.00 2.57
2951 4566 8.211116 ACACAAAATGAATTTCAAGCATCAAA 57.789 26.923 2.68 0.00 0.00 2.69
2952 4567 8.675504 ACACAAAATGAATTTCAAGCATCAAAA 58.324 25.926 2.68 0.00 0.00 2.44
2953 4568 8.949953 CACAAAATGAATTTCAAGCATCAAAAC 58.050 29.630 2.68 0.00 0.00 2.43
2954 4569 8.675504 ACAAAATGAATTTCAAGCATCAAAACA 58.324 25.926 2.68 0.00 0.00 2.83
2955 4570 9.504710 CAAAATGAATTTCAAGCATCAAAACAA 57.495 25.926 2.68 0.00 0.00 2.83
2957 4572 9.724839 AAATGAATTTCAAGCATCAAAACAAAG 57.275 25.926 2.68 0.00 0.00 2.77
2958 4573 8.665643 ATGAATTTCAAGCATCAAAACAAAGA 57.334 26.923 2.68 0.00 0.00 2.52
2959 4574 7.908230 TGAATTTCAAGCATCAAAACAAAGAC 58.092 30.769 0.00 0.00 0.00 3.01
2960 4575 7.548427 TGAATTTCAAGCATCAAAACAAAGACA 59.452 29.630 0.00 0.00 0.00 3.41
2961 4576 8.441312 AATTTCAAGCATCAAAACAAAGACAT 57.559 26.923 0.00 0.00 0.00 3.06
2962 4577 6.831727 TTCAAGCATCAAAACAAAGACATG 57.168 33.333 0.00 0.00 0.00 3.21
2963 4578 6.146601 TCAAGCATCAAAACAAAGACATGA 57.853 33.333 0.00 0.00 0.00 3.07
2964 4579 5.978919 TCAAGCATCAAAACAAAGACATGAC 59.021 36.000 0.00 0.00 0.00 3.06
2965 4580 5.518848 AGCATCAAAACAAAGACATGACA 57.481 34.783 0.00 0.00 0.00 3.58
2966 4581 6.092955 AGCATCAAAACAAAGACATGACAT 57.907 33.333 0.00 0.00 0.00 3.06
2967 4582 7.218228 AGCATCAAAACAAAGACATGACATA 57.782 32.000 0.00 0.00 0.00 2.29
2968 4583 7.660112 AGCATCAAAACAAAGACATGACATAA 58.340 30.769 0.00 0.00 0.00 1.90
2969 4584 8.308931 AGCATCAAAACAAAGACATGACATAAT 58.691 29.630 0.00 0.00 0.00 1.28
2970 4585 8.928733 GCATCAAAACAAAGACATGACATAATT 58.071 29.630 0.00 0.00 0.00 1.40
2999 4614 8.797350 ATCATAGAAACAAGTTCATGATGACA 57.203 30.769 0.00 0.00 39.88 3.58
3000 4615 8.797350 TCATAGAAACAAGTTCATGATGACAT 57.203 30.769 0.00 0.00 38.86 3.06
3001 4616 9.889128 TCATAGAAACAAGTTCATGATGACATA 57.111 29.630 0.00 0.00 38.86 2.29
3005 4620 9.903682 AGAAACAAGTTCATGATGACATAAAAG 57.096 29.630 0.00 0.00 38.86 2.27
3006 4621 9.683069 GAAACAAGTTCATGATGACATAAAAGT 57.317 29.630 0.00 0.00 36.15 2.66
3008 4623 9.683069 AACAAGTTCATGATGACATAAAAGTTC 57.317 29.630 0.00 0.00 35.09 3.01
3009 4624 8.849168 ACAAGTTCATGATGACATAAAAGTTCA 58.151 29.630 0.00 0.00 35.09 3.18
3010 4625 9.850628 CAAGTTCATGATGACATAAAAGTTCAT 57.149 29.630 0.00 0.00 35.09 2.57
3011 4626 9.850628 AAGTTCATGATGACATAAAAGTTCATG 57.149 29.630 0.00 6.61 37.77 3.07
3012 4627 7.972277 AGTTCATGATGACATAAAAGTTCATGC 59.028 33.333 0.00 0.00 36.98 4.06
3013 4628 6.798482 TCATGATGACATAAAAGTTCATGCC 58.202 36.000 7.70 0.00 36.98 4.40
3014 4629 5.581126 TGATGACATAAAAGTTCATGCCC 57.419 39.130 0.00 0.00 0.00 5.36
3015 4630 5.015515 TGATGACATAAAAGTTCATGCCCA 58.984 37.500 0.00 0.00 0.00 5.36
3016 4631 4.782019 TGACATAAAAGTTCATGCCCAC 57.218 40.909 0.00 0.00 0.00 4.61
3017 4632 4.148079 TGACATAAAAGTTCATGCCCACA 58.852 39.130 0.00 0.00 0.00 4.17
3018 4633 4.586421 TGACATAAAAGTTCATGCCCACAA 59.414 37.500 0.00 0.00 0.00 3.33
3019 4634 5.138125 ACATAAAAGTTCATGCCCACAAG 57.862 39.130 0.00 0.00 0.00 3.16
3020 4635 4.588528 ACATAAAAGTTCATGCCCACAAGT 59.411 37.500 0.00 0.00 0.00 3.16
3021 4636 5.070313 ACATAAAAGTTCATGCCCACAAGTT 59.930 36.000 0.00 0.00 0.00 2.66
3022 4637 3.733443 AAAGTTCATGCCCACAAGTTC 57.267 42.857 0.00 0.00 0.00 3.01
3023 4638 2.363306 AGTTCATGCCCACAAGTTCA 57.637 45.000 0.00 0.00 0.00 3.18
3024 4639 2.665165 AGTTCATGCCCACAAGTTCAA 58.335 42.857 0.00 0.00 0.00 2.69
3025 4640 3.030291 AGTTCATGCCCACAAGTTCAAA 58.970 40.909 0.00 0.00 0.00 2.69
3026 4641 3.642848 AGTTCATGCCCACAAGTTCAAAT 59.357 39.130 0.00 0.00 0.00 2.32
3027 4642 4.101430 AGTTCATGCCCACAAGTTCAAATT 59.899 37.500 0.00 0.00 0.00 1.82
3028 4643 4.255833 TCATGCCCACAAGTTCAAATTC 57.744 40.909 0.00 0.00 0.00 2.17
3029 4644 3.640498 TCATGCCCACAAGTTCAAATTCA 59.360 39.130 0.00 0.00 0.00 2.57
3030 4645 4.283978 TCATGCCCACAAGTTCAAATTCAT 59.716 37.500 0.00 0.00 0.00 2.57
3031 4646 3.992643 TGCCCACAAGTTCAAATTCATG 58.007 40.909 0.00 0.00 0.00 3.07
3032 4647 2.738314 GCCCACAAGTTCAAATTCATGC 59.262 45.455 0.00 0.00 0.00 4.06
3033 4648 3.328505 CCCACAAGTTCAAATTCATGCC 58.671 45.455 0.00 0.00 0.00 4.40
3034 4649 3.328505 CCACAAGTTCAAATTCATGCCC 58.671 45.455 0.00 0.00 0.00 5.36
3035 4650 3.244146 CCACAAGTTCAAATTCATGCCCA 60.244 43.478 0.00 0.00 0.00 5.36
3036 4651 3.742369 CACAAGTTCAAATTCATGCCCAC 59.258 43.478 0.00 0.00 0.00 4.61
3037 4652 3.387374 ACAAGTTCAAATTCATGCCCACA 59.613 39.130 0.00 0.00 0.00 4.17
3038 4653 4.141756 ACAAGTTCAAATTCATGCCCACAA 60.142 37.500 0.00 0.00 0.00 3.33
3039 4654 4.261578 AGTTCAAATTCATGCCCACAAG 57.738 40.909 0.00 0.00 0.00 3.16
3040 4655 3.642848 AGTTCAAATTCATGCCCACAAGT 59.357 39.130 0.00 0.00 0.00 3.16
3041 4656 4.101430 AGTTCAAATTCATGCCCACAAGTT 59.899 37.500 0.00 0.00 0.00 2.66
3042 4657 4.255833 TCAAATTCATGCCCACAAGTTC 57.744 40.909 0.00 0.00 0.00 3.01
3043 4658 3.640498 TCAAATTCATGCCCACAAGTTCA 59.360 39.130 0.00 0.00 0.00 3.18
3044 4659 4.100653 TCAAATTCATGCCCACAAGTTCAA 59.899 37.500 0.00 0.00 0.00 2.69
3045 4660 4.686191 AATTCATGCCCACAAGTTCAAA 57.314 36.364 0.00 0.00 0.00 2.69
3046 4661 4.686191 ATTCATGCCCACAAGTTCAAAA 57.314 36.364 0.00 0.00 0.00 2.44
3047 4662 4.686191 TTCATGCCCACAAGTTCAAAAT 57.314 36.364 0.00 0.00 0.00 1.82
3048 4663 4.255833 TCATGCCCACAAGTTCAAAATC 57.744 40.909 0.00 0.00 0.00 2.17
3049 4664 3.896888 TCATGCCCACAAGTTCAAAATCT 59.103 39.130 0.00 0.00 0.00 2.40
3050 4665 3.731652 TGCCCACAAGTTCAAAATCTG 57.268 42.857 0.00 0.00 0.00 2.90
3051 4666 3.295093 TGCCCACAAGTTCAAAATCTGA 58.705 40.909 0.00 0.00 0.00 3.27
3052 4667 3.703556 TGCCCACAAGTTCAAAATCTGAA 59.296 39.130 0.00 0.00 41.93 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.174712 AACGGTTGCAGCAGCTTGAT 61.175 50.000 9.34 0.00 42.74 2.57
1 2 1.823470 AACGGTTGCAGCAGCTTGA 60.823 52.632 9.34 0.00 42.74 3.02
37 38 0.038251 TGTTGTTGTTTGCGCCACAA 60.038 45.000 16.11 16.11 36.13 3.33
38 39 0.734253 GTGTTGTTGTTTGCGCCACA 60.734 50.000 4.18 4.94 0.00 4.17
51 52 0.814010 GTTGTCGCTCCCAGTGTTGT 60.814 55.000 0.00 0.00 0.00 3.32
52 53 0.813610 TGTTGTCGCTCCCAGTGTTG 60.814 55.000 0.00 0.00 0.00 3.33
53 54 0.814010 GTGTTGTCGCTCCCAGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
54 55 1.227556 GTGTTGTCGCTCCCAGTGT 60.228 57.895 0.00 0.00 0.00 3.55
55 56 0.813610 TTGTGTTGTCGCTCCCAGTG 60.814 55.000 0.00 0.00 0.00 3.66
56 57 0.107410 TTTGTGTTGTCGCTCCCAGT 60.107 50.000 0.00 0.00 0.00 4.00
57 58 0.307760 GTTTGTGTTGTCGCTCCCAG 59.692 55.000 0.00 0.00 0.00 4.45
58 59 0.393132 TGTTTGTGTTGTCGCTCCCA 60.393 50.000 0.00 0.00 0.00 4.37
59 60 0.736053 TTGTTTGTGTTGTCGCTCCC 59.264 50.000 0.00 0.00 0.00 4.30
60 61 1.400494 AGTTGTTTGTGTTGTCGCTCC 59.600 47.619 0.00 0.00 0.00 4.70
61 62 2.538939 GGAGTTGTTTGTGTTGTCGCTC 60.539 50.000 0.00 0.00 0.00 5.03
62 63 1.400494 GGAGTTGTTTGTGTTGTCGCT 59.600 47.619 0.00 0.00 0.00 4.93
63 64 1.822581 GGAGTTGTTTGTGTTGTCGC 58.177 50.000 0.00 0.00 0.00 5.19
64 65 1.395608 ACGGAGTTGTTTGTGTTGTCG 59.604 47.619 0.00 0.00 37.78 4.35
65 66 2.780993 CACGGAGTTGTTTGTGTTGTC 58.219 47.619 0.00 0.00 41.61 3.18
70 71 0.592247 GCAGCACGGAGTTGTTTGTG 60.592 55.000 0.00 0.00 41.61 3.33
92 93 3.508840 CAGGGATTTCACCGCGGC 61.509 66.667 28.58 7.47 0.00 6.53
97 98 1.250840 GGTGCACCAGGGATTTCACC 61.251 60.000 31.23 0.00 37.42 4.02
102 103 4.740822 GCCGGTGCACCAGGGATT 62.741 66.667 33.30 0.00 37.47 3.01
130 131 2.115427 TGGGATATGTTCTCCGCTTCA 58.885 47.619 0.00 0.00 33.29 3.02
152 153 2.028484 GGCACGAAGACGGTGACA 59.972 61.111 0.00 0.00 44.46 3.58
185 195 1.306141 TCCTCCCTCTTGCCGTCAT 60.306 57.895 0.00 0.00 0.00 3.06
186 196 1.984570 CTCCTCCCTCTTGCCGTCA 60.985 63.158 0.00 0.00 0.00 4.35
253 263 8.646004 TCATGAAAATTCAAATGTGGGTAGAAA 58.354 29.630 0.00 0.00 41.13 2.52
276 286 6.209986 ACACACAATGGATGTCATTTCTTCAT 59.790 34.615 0.00 0.00 43.04 2.57
426 437 3.027170 CTCCATCACGCACGTTGCC 62.027 63.158 0.00 0.00 41.12 4.52
470 482 2.281761 CTCCGGCCAGCTTGTGTT 60.282 61.111 2.24 0.00 0.00 3.32
587 599 3.944233 GTGCGCGACCCACGTTTT 61.944 61.111 12.10 0.00 44.60 2.43
652 676 0.836606 TTCAACTCCAGGTGTGCAGA 59.163 50.000 0.00 0.00 0.00 4.26
689 713 2.099994 CATGACCACATGCGCATCA 58.900 52.632 22.51 16.93 45.51 3.07
795 819 1.380785 CGGTAGGGTAGGAGGCACA 60.381 63.158 0.00 0.00 0.00 4.57
797 821 2.281091 CCGGTAGGGTAGGAGGCA 59.719 66.667 0.00 0.00 0.00 4.75
819 848 2.365635 GGGGCAGGAGCAGGACTA 60.366 66.667 0.00 0.00 44.61 2.59
853 882 1.787057 CGAGCGAGGATTAGCCGAGT 61.787 60.000 0.00 0.00 43.43 4.18
854 883 1.081774 CGAGCGAGGATTAGCCGAG 60.082 63.158 0.00 0.00 43.43 4.63
855 884 3.031495 CGAGCGAGGATTAGCCGA 58.969 61.111 0.00 0.00 43.43 5.54
856 885 2.731348 GCGAGCGAGGATTAGCCG 60.731 66.667 0.00 0.00 43.43 5.52
857 886 2.356433 GGCGAGCGAGGATTAGCC 60.356 66.667 0.00 0.00 37.61 3.93
858 887 1.372375 GAGGCGAGCGAGGATTAGC 60.372 63.158 0.00 0.00 0.00 3.09
859 888 1.175983 AGGAGGCGAGCGAGGATTAG 61.176 60.000 0.00 0.00 0.00 1.73
860 889 1.152735 AGGAGGCGAGCGAGGATTA 60.153 57.895 0.00 0.00 0.00 1.75
872 901 1.760480 GTGAGAGGGAGGAGGAGGC 60.760 68.421 0.00 0.00 0.00 4.70
907 937 0.753867 GAAGGGTGGCTAGCTAGGAC 59.246 60.000 22.10 6.36 0.00 3.85
2113 2156 1.011451 GTGCCAGCTCTCAGTCGAAC 61.011 60.000 0.00 0.00 0.00 3.95
2134 2177 2.493973 CTGCCTCTCAGCTCGACC 59.506 66.667 0.00 0.00 35.78 4.79
2202 2245 2.151202 TCTCCCGAATGACAAACTTGC 58.849 47.619 0.00 0.00 0.00 4.01
2214 2257 1.475403 ATTCTTCGAGCTCTCCCGAA 58.525 50.000 12.85 9.87 41.71 4.30
2327 3650 3.416119 CGTGTGACGTGTCCTGTATAT 57.584 47.619 0.00 0.00 36.74 0.86
2328 3651 2.905959 CGTGTGACGTGTCCTGTATA 57.094 50.000 0.00 0.00 36.74 1.47
2377 3700 5.293324 ACGTATACATGTACACATTTGCTGG 59.707 40.000 14.35 0.00 33.61 4.85
2378 3701 6.184706 CACGTATACATGTACACATTTGCTG 58.815 40.000 14.35 0.00 33.61 4.41
2379 3702 5.220586 GCACGTATACATGTACACATTTGCT 60.221 40.000 18.43 1.53 33.61 3.91
2380 3703 4.961551 GCACGTATACATGTACACATTTGC 59.038 41.667 14.35 13.93 33.61 3.68
2381 3704 5.004916 TCGCACGTATACATGTACACATTTG 59.995 40.000 14.35 8.67 33.61 2.32
2387 3994 4.674475 ACATTCGCACGTATACATGTACA 58.326 39.130 7.96 0.00 0.00 2.90
2391 3998 5.567915 CCTAGTACATTCGCACGTATACATG 59.432 44.000 3.32 0.00 0.00 3.21
2420 4027 3.181566 CGTATGAATTATCGCGTCGACAC 60.182 47.826 17.16 4.66 39.18 3.67
2421 4028 2.968655 CGTATGAATTATCGCGTCGACA 59.031 45.455 17.16 0.00 39.18 4.35
2422 4029 2.969306 ACGTATGAATTATCGCGTCGAC 59.031 45.455 5.77 5.18 39.18 4.20
2424 4031 4.145928 AGAAACGTATGAATTATCGCGTCG 59.854 41.667 5.77 0.00 32.60 5.12
2427 4034 6.637365 AGAAAGAAACGTATGAATTATCGCG 58.363 36.000 0.00 0.00 0.00 5.87
2428 4035 6.781426 CGAGAAAGAAACGTATGAATTATCGC 59.219 38.462 0.00 0.00 0.00 4.58
2440 4055 5.277345 CCTCACATTTTCGAGAAAGAAACGT 60.277 40.000 0.00 0.00 39.53 3.99
2441 4056 5.140177 CCTCACATTTTCGAGAAAGAAACG 58.860 41.667 0.00 0.00 39.53 3.60
2442 4057 6.061231 ACCTCACATTTTCGAGAAAGAAAC 57.939 37.500 0.00 0.00 39.53 2.78
2443 4058 6.693315 AACCTCACATTTTCGAGAAAGAAA 57.307 33.333 0.00 0.00 38.23 2.52
2444 4059 6.094881 ACAAACCTCACATTTTCGAGAAAGAA 59.905 34.615 0.00 0.00 0.00 2.52
2446 4061 5.821204 ACAAACCTCACATTTTCGAGAAAG 58.179 37.500 0.00 0.00 0.00 2.62
2450 4065 5.424121 AGAACAAACCTCACATTTTCGAG 57.576 39.130 0.00 0.00 0.00 4.04
2453 4068 5.774498 AGGAGAACAAACCTCACATTTTC 57.226 39.130 0.00 0.00 32.48 2.29
2468 4083 7.301789 GTTTCTGCTTTAAATCAGAGGAGAAC 58.698 38.462 18.31 15.95 44.13 3.01
2469 4084 6.431234 GGTTTCTGCTTTAAATCAGAGGAGAA 59.569 38.462 18.31 11.55 43.22 2.87
2470 4085 5.940470 GGTTTCTGCTTTAAATCAGAGGAGA 59.060 40.000 18.31 6.55 40.07 3.71
2471 4086 5.163814 CGGTTTCTGCTTTAAATCAGAGGAG 60.164 44.000 18.31 10.11 40.07 3.69
2472 4087 4.695455 CGGTTTCTGCTTTAAATCAGAGGA 59.305 41.667 18.31 10.88 40.07 3.71
2483 4098 0.822121 GTCCACCCGGTTTCTGCTTT 60.822 55.000 0.00 0.00 0.00 3.51
2484 4099 1.228154 GTCCACCCGGTTTCTGCTT 60.228 57.895 0.00 0.00 0.00 3.91
2485 4100 0.834687 TAGTCCACCCGGTTTCTGCT 60.835 55.000 0.00 0.00 0.00 4.24
2486 4101 0.672711 GTAGTCCACCCGGTTTCTGC 60.673 60.000 0.00 0.00 0.00 4.26
2487 4102 0.682852 TGTAGTCCACCCGGTTTCTG 59.317 55.000 0.00 0.00 0.00 3.02
2488 4103 1.426751 TTGTAGTCCACCCGGTTTCT 58.573 50.000 0.00 0.00 0.00 2.52
2489 4104 2.259266 TTTGTAGTCCACCCGGTTTC 57.741 50.000 0.00 0.00 0.00 2.78
2490 4105 2.963599 ATTTGTAGTCCACCCGGTTT 57.036 45.000 0.00 0.00 0.00 3.27
2491 4106 3.175594 TCTATTTGTAGTCCACCCGGTT 58.824 45.455 0.00 0.00 0.00 4.44
2492 4107 2.764572 CTCTATTTGTAGTCCACCCGGT 59.235 50.000 0.00 0.00 0.00 5.28
2493 4108 2.483188 GCTCTATTTGTAGTCCACCCGG 60.483 54.545 0.00 0.00 0.00 5.73
2494 4109 2.167693 TGCTCTATTTGTAGTCCACCCG 59.832 50.000 0.00 0.00 0.00 5.28
2495 4110 3.906720 TGCTCTATTTGTAGTCCACCC 57.093 47.619 0.00 0.00 0.00 4.61
2496 4111 5.283457 AGATGCTCTATTTGTAGTCCACC 57.717 43.478 0.00 0.00 0.00 4.61
2497 4112 5.163405 TGGAGATGCTCTATTTGTAGTCCAC 60.163 44.000 0.00 0.00 0.00 4.02
2498 4113 4.962362 TGGAGATGCTCTATTTGTAGTCCA 59.038 41.667 0.00 0.00 0.00 4.02
2499 4114 5.537300 TGGAGATGCTCTATTTGTAGTCC 57.463 43.478 0.00 0.00 0.00 3.85
2500 4115 6.810911 TCTTGGAGATGCTCTATTTGTAGTC 58.189 40.000 0.00 0.00 0.00 2.59
2501 4116 6.183360 CCTCTTGGAGATGCTCTATTTGTAGT 60.183 42.308 0.00 0.00 34.57 2.73
2502 4117 6.222389 CCTCTTGGAGATGCTCTATTTGTAG 58.778 44.000 0.00 0.00 34.57 2.74
2503 4118 5.453903 GCCTCTTGGAGATGCTCTATTTGTA 60.454 44.000 0.00 0.00 33.80 2.41
2504 4119 4.685575 GCCTCTTGGAGATGCTCTATTTGT 60.686 45.833 0.00 0.00 33.80 2.83
2505 4120 3.814283 GCCTCTTGGAGATGCTCTATTTG 59.186 47.826 0.00 0.00 33.80 2.32
2506 4121 3.494048 CGCCTCTTGGAGATGCTCTATTT 60.494 47.826 4.22 0.00 34.33 1.40
2507 4122 2.036992 CGCCTCTTGGAGATGCTCTATT 59.963 50.000 4.22 0.00 34.33 1.73
2508 4123 1.617850 CGCCTCTTGGAGATGCTCTAT 59.382 52.381 4.22 0.00 34.33 1.98
2509 4124 1.035923 CGCCTCTTGGAGATGCTCTA 58.964 55.000 4.22 0.00 34.33 2.43
2510 4125 1.821936 CGCCTCTTGGAGATGCTCT 59.178 57.895 4.22 0.00 34.33 4.09
2511 4126 1.886777 GCGCCTCTTGGAGATGCTC 60.887 63.158 0.00 0.00 34.33 4.26
2512 4127 2.188994 GCGCCTCTTGGAGATGCT 59.811 61.111 0.00 0.00 34.33 3.79
2513 4128 2.899339 GGCGCCTCTTGGAGATGC 60.899 66.667 22.15 0.21 34.95 3.91
2514 4129 2.203126 GGGCGCCTCTTGGAGATG 60.203 66.667 28.56 0.00 34.95 2.90
2515 4130 1.852157 TTTGGGCGCCTCTTGGAGAT 61.852 55.000 28.56 0.00 34.95 2.75
2516 4131 2.063015 TTTTGGGCGCCTCTTGGAGA 62.063 55.000 28.56 1.45 34.95 3.71
2517 4132 1.178534 TTTTTGGGCGCCTCTTGGAG 61.179 55.000 28.56 0.00 36.16 3.86
2518 4133 1.152652 TTTTTGGGCGCCTCTTGGA 60.153 52.632 28.56 5.58 34.57 3.53
2519 4134 1.006220 GTTTTTGGGCGCCTCTTGG 60.006 57.895 28.56 0.00 0.00 3.61
2520 4135 0.318955 CAGTTTTTGGGCGCCTCTTG 60.319 55.000 28.56 11.37 0.00 3.02
2521 4136 1.463553 CCAGTTTTTGGGCGCCTCTT 61.464 55.000 28.56 2.19 43.75 2.85
2522 4137 1.903404 CCAGTTTTTGGGCGCCTCT 60.903 57.895 28.56 12.09 43.75 3.69
2523 4138 2.650778 CCAGTTTTTGGGCGCCTC 59.349 61.111 28.56 17.27 43.75 4.70
2531 4146 1.081708 GTACGCGGCCCAGTTTTTG 60.082 57.895 12.47 0.00 0.00 2.44
2532 4147 0.035176 TAGTACGCGGCCCAGTTTTT 59.965 50.000 12.47 0.00 0.00 1.94
2533 4148 0.035176 TTAGTACGCGGCCCAGTTTT 59.965 50.000 12.47 0.00 0.00 2.43
2534 4149 0.035176 TTTAGTACGCGGCCCAGTTT 59.965 50.000 12.47 0.00 0.00 2.66
2535 4150 0.251073 ATTTAGTACGCGGCCCAGTT 59.749 50.000 12.47 0.00 0.00 3.16
2536 4151 0.251073 AATTTAGTACGCGGCCCAGT 59.749 50.000 12.47 0.00 0.00 4.00
2537 4152 1.375551 AAATTTAGTACGCGGCCCAG 58.624 50.000 12.47 0.00 0.00 4.45
2538 4153 1.823797 AAAATTTAGTACGCGGCCCA 58.176 45.000 12.47 0.00 0.00 5.36
2539 4154 2.288729 CCTAAAATTTAGTACGCGGCCC 59.711 50.000 12.47 0.00 0.00 5.80
2540 4155 2.938451 ACCTAAAATTTAGTACGCGGCC 59.062 45.455 12.47 0.00 0.00 6.13
2541 4156 4.604843 AACCTAAAATTTAGTACGCGGC 57.395 40.909 12.47 2.30 0.00 6.53
2562 4177 2.613691 GGAGCTATCCGACGTCAAAAA 58.386 47.619 17.16 0.00 35.37 1.94
2563 4178 2.288961 GGAGCTATCCGACGTCAAAA 57.711 50.000 17.16 0.00 35.37 2.44
2571 4186 6.613028 ACAGCTTTTGTTGGAGCTATCCGA 62.613 45.833 0.00 0.00 46.92 4.55
2572 4187 4.422712 ACAGCTTTTGTTGGAGCTATCCG 61.423 47.826 0.00 0.00 46.92 4.18
2573 4188 3.084786 ACAGCTTTTGTTGGAGCTATCC 58.915 45.455 0.00 0.00 46.92 2.59
2574 4189 5.880054 TTACAGCTTTTGTTGGAGCTATC 57.120 39.130 0.00 0.00 46.92 2.08
2575 4190 6.040391 TGTTTTACAGCTTTTGTTGGAGCTAT 59.960 34.615 0.00 0.00 46.92 2.97
2576 4191 5.358442 TGTTTTACAGCTTTTGTTGGAGCTA 59.642 36.000 0.00 0.00 46.92 3.32
2578 4193 4.429108 TGTTTTACAGCTTTTGTTGGAGC 58.571 39.130 0.00 0.00 41.29 4.70
2592 4207 1.213733 TACGCGCGCACTGTTTTACA 61.214 50.000 32.58 2.22 0.00 2.41
2593 4208 0.111178 TTACGCGCGCACTGTTTTAC 60.111 50.000 32.58 0.00 0.00 2.01
2594 4209 0.580578 TTTACGCGCGCACTGTTTTA 59.419 45.000 32.58 9.31 0.00 1.52
2595 4210 0.248134 TTTTACGCGCGCACTGTTTT 60.248 45.000 32.58 10.51 0.00 2.43
2596 4211 0.248134 TTTTTACGCGCGCACTGTTT 60.248 45.000 32.58 11.38 0.00 2.83
2597 4212 1.352404 TTTTTACGCGCGCACTGTT 59.648 47.368 32.58 12.24 0.00 3.16
2598 4213 3.015677 TTTTTACGCGCGCACTGT 58.984 50.000 32.58 22.80 0.00 3.55
2614 4229 1.195900 TCAGCGCGCGTCTAAATTTTT 59.804 42.857 32.35 0.00 0.00 1.94
2615 4230 0.793861 TCAGCGCGCGTCTAAATTTT 59.206 45.000 32.35 0.00 0.00 1.82
2616 4231 0.793861 TTCAGCGCGCGTCTAAATTT 59.206 45.000 32.35 0.57 0.00 1.82
2617 4232 0.793861 TTTCAGCGCGCGTCTAAATT 59.206 45.000 32.35 1.48 0.00 1.82
2618 4233 0.793861 TTTTCAGCGCGCGTCTAAAT 59.206 45.000 32.35 2.41 0.00 1.40
2619 4234 0.582482 TTTTTCAGCGCGCGTCTAAA 59.418 45.000 32.35 23.51 0.00 1.85
2620 4235 0.793861 ATTTTTCAGCGCGCGTCTAA 59.206 45.000 32.35 19.15 0.00 2.10
2621 4236 0.094558 CATTTTTCAGCGCGCGTCTA 59.905 50.000 32.35 13.93 0.00 2.59
2622 4237 1.154413 CATTTTTCAGCGCGCGTCT 60.154 52.632 32.35 24.80 0.00 4.18
2623 4238 2.767919 GCATTTTTCAGCGCGCGTC 61.768 57.895 32.35 22.88 0.00 5.19
2624 4239 1.906994 TAGCATTTTTCAGCGCGCGT 61.907 50.000 32.35 15.53 35.48 6.01
2625 4240 0.589729 ATAGCATTTTTCAGCGCGCG 60.590 50.000 28.44 28.44 35.48 6.86
2626 4241 1.115639 GATAGCATTTTTCAGCGCGC 58.884 50.000 26.66 26.66 35.48 6.86
2627 4242 2.456942 TGATAGCATTTTTCAGCGCG 57.543 45.000 0.00 0.00 35.48 6.86
2628 4243 4.201618 GGTTTTGATAGCATTTTTCAGCGC 60.202 41.667 0.00 0.00 35.48 5.92
2629 4244 4.922692 TGGTTTTGATAGCATTTTTCAGCG 59.077 37.500 0.00 0.00 35.48 5.18
2630 4245 5.928264 ACTGGTTTTGATAGCATTTTTCAGC 59.072 36.000 0.00 0.00 0.00 4.26
2631 4246 9.474920 TTTACTGGTTTTGATAGCATTTTTCAG 57.525 29.630 0.00 0.00 0.00 3.02
2632 4247 9.995003 ATTTACTGGTTTTGATAGCATTTTTCA 57.005 25.926 0.00 0.00 0.00 2.69
2636 4251 9.995003 TCAAATTTACTGGTTTTGATAGCATTT 57.005 25.926 0.00 0.00 35.16 2.32
2637 4252 9.643693 CTCAAATTTACTGGTTTTGATAGCATT 57.356 29.630 0.00 0.00 38.34 3.56
2638 4253 8.253113 CCTCAAATTTACTGGTTTTGATAGCAT 58.747 33.333 0.00 0.00 38.34 3.79
2639 4254 7.601856 CCTCAAATTTACTGGTTTTGATAGCA 58.398 34.615 0.00 0.00 38.34 3.49
2640 4255 6.531594 GCCTCAAATTTACTGGTTTTGATAGC 59.468 38.462 0.00 0.00 38.34 2.97
2641 4256 6.747280 CGCCTCAAATTTACTGGTTTTGATAG 59.253 38.462 0.00 0.00 38.34 2.08
2642 4257 6.616947 CGCCTCAAATTTACTGGTTTTGATA 58.383 36.000 0.00 0.00 38.34 2.15
2643 4258 5.469479 CGCCTCAAATTTACTGGTTTTGAT 58.531 37.500 0.00 0.00 38.34 2.57
2644 4259 4.794655 GCGCCTCAAATTTACTGGTTTTGA 60.795 41.667 0.00 0.00 37.11 2.69
2645 4260 3.428534 GCGCCTCAAATTTACTGGTTTTG 59.571 43.478 0.00 0.00 0.00 2.44
2646 4261 3.554129 GGCGCCTCAAATTTACTGGTTTT 60.554 43.478 22.15 0.00 0.00 2.43
2647 4262 2.029380 GGCGCCTCAAATTTACTGGTTT 60.029 45.455 22.15 0.00 0.00 3.27
2648 4263 1.544246 GGCGCCTCAAATTTACTGGTT 59.456 47.619 22.15 0.00 0.00 3.67
2649 4264 1.173913 GGCGCCTCAAATTTACTGGT 58.826 50.000 22.15 0.00 0.00 4.00
2650 4265 0.098728 CGGCGCCTCAAATTTACTGG 59.901 55.000 26.68 0.00 0.00 4.00
2651 4266 0.098728 CCGGCGCCTCAAATTTACTG 59.901 55.000 26.68 3.45 0.00 2.74
2652 4267 0.035820 TCCGGCGCCTCAAATTTACT 60.036 50.000 26.68 0.00 0.00 2.24
2653 4268 1.021968 ATCCGGCGCCTCAAATTTAC 58.978 50.000 26.68 0.00 0.00 2.01
2654 4269 1.403679 CAATCCGGCGCCTCAAATTTA 59.596 47.619 26.68 0.40 0.00 1.40
2655 4270 0.173255 CAATCCGGCGCCTCAAATTT 59.827 50.000 26.68 6.48 0.00 1.82
2656 4271 1.809207 CAATCCGGCGCCTCAAATT 59.191 52.632 26.68 14.93 0.00 1.82
2657 4272 2.774799 GCAATCCGGCGCCTCAAAT 61.775 57.895 26.68 9.38 0.00 2.32
2658 4273 3.439540 GCAATCCGGCGCCTCAAA 61.440 61.111 26.68 7.16 0.00 2.69
2674 4289 1.511043 TAAATTGTGAAGCGCGCGC 60.511 52.632 45.10 45.10 42.33 6.86
2675 4290 0.451957 TGTAAATTGTGAAGCGCGCG 60.452 50.000 28.44 28.44 0.00 6.86
2676 4291 0.974836 GTGTAAATTGTGAAGCGCGC 59.025 50.000 26.66 26.66 0.00 6.86
2677 4292 2.233355 CAGTGTAAATTGTGAAGCGCG 58.767 47.619 0.00 0.00 0.00 6.86
2678 4293 1.978782 GCAGTGTAAATTGTGAAGCGC 59.021 47.619 0.00 0.00 0.00 5.92
2679 4294 2.233355 CGCAGTGTAAATTGTGAAGCG 58.767 47.619 0.00 0.00 36.62 4.68
2680 4295 3.268013 ACGCAGTGTAAATTGTGAAGC 57.732 42.857 0.00 0.00 42.51 3.86
2695 4310 0.577269 GCGGCTAATAGAACACGCAG 59.423 55.000 11.84 0.00 45.57 5.18
2696 4311 2.673074 GCGGCTAATAGAACACGCA 58.327 52.632 11.84 0.00 45.57 5.24
2697 4312 0.300789 GTGCGGCTAATAGAACACGC 59.699 55.000 0.00 10.48 46.34 5.34
2698 4313 0.570734 CGTGCGGCTAATAGAACACG 59.429 55.000 12.96 12.96 43.83 4.49
2699 4314 1.636988 ACGTGCGGCTAATAGAACAC 58.363 50.000 0.00 0.00 0.00 3.32
2700 4315 2.373540 AACGTGCGGCTAATAGAACA 57.626 45.000 0.00 0.00 0.00 3.18
2701 4316 3.413558 CAAAACGTGCGGCTAATAGAAC 58.586 45.455 0.00 0.00 0.00 3.01
2702 4317 2.417239 CCAAAACGTGCGGCTAATAGAA 59.583 45.455 0.00 0.00 0.00 2.10
2703 4318 2.004017 CCAAAACGTGCGGCTAATAGA 58.996 47.619 0.00 0.00 0.00 1.98
2704 4319 1.063469 CCCAAAACGTGCGGCTAATAG 59.937 52.381 0.00 0.00 0.00 1.73
2705 4320 1.088306 CCCAAAACGTGCGGCTAATA 58.912 50.000 0.00 0.00 0.00 0.98
2706 4321 1.880186 CCCAAAACGTGCGGCTAAT 59.120 52.632 0.00 0.00 0.00 1.73
2707 4322 2.910345 GCCCAAAACGTGCGGCTAA 61.910 57.895 0.00 0.00 39.32 3.09
2708 4323 3.358707 GCCCAAAACGTGCGGCTA 61.359 61.111 0.00 0.00 39.32 3.93
2710 4325 4.356442 ATGCCCAAAACGTGCGGC 62.356 61.111 8.15 8.15 41.49 6.53
2711 4326 2.126502 GATGCCCAAAACGTGCGG 60.127 61.111 0.00 0.00 0.00 5.69
2712 4327 1.442520 CAGATGCCCAAAACGTGCG 60.443 57.895 0.00 0.00 0.00 5.34
2713 4328 1.734117 GCAGATGCCCAAAACGTGC 60.734 57.895 0.00 0.00 34.31 5.34
2714 4329 1.164411 TAGCAGATGCCCAAAACGTG 58.836 50.000 0.14 0.00 43.38 4.49
2715 4330 1.812571 CTTAGCAGATGCCCAAAACGT 59.187 47.619 0.14 0.00 43.38 3.99
2716 4331 2.083774 TCTTAGCAGATGCCCAAAACG 58.916 47.619 0.14 0.00 43.38 3.60
2717 4332 2.159324 GCTCTTAGCAGATGCCCAAAAC 60.159 50.000 0.14 0.00 41.89 2.43
2718 4333 2.094675 GCTCTTAGCAGATGCCCAAAA 58.905 47.619 0.14 0.00 41.89 2.44
2719 4334 1.755179 GCTCTTAGCAGATGCCCAAA 58.245 50.000 0.14 0.00 41.89 3.28
2720 4335 3.483954 GCTCTTAGCAGATGCCCAA 57.516 52.632 0.14 0.00 41.89 4.12
2730 4345 1.939255 GCTGTTGGAGATGCTCTTAGC 59.061 52.381 0.00 0.00 42.82 3.09
2731 4346 2.559440 GGCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 0.00 2.18
2732 4347 1.134699 CGGCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
2733 4348 0.392193 CGGCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
2734 4349 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
2735 4350 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
2736 4351 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
2737 4352 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
2738 4353 2.825836 GGGCGGCTGTTGGAGATG 60.826 66.667 9.56 0.00 0.00 2.90
2739 4354 2.905996 TTGGGCGGCTGTTGGAGAT 61.906 57.895 9.56 0.00 0.00 2.75
2740 4355 3.565214 TTGGGCGGCTGTTGGAGA 61.565 61.111 9.56 0.00 0.00 3.71
2741 4356 3.365265 GTTGGGCGGCTGTTGGAG 61.365 66.667 9.56 0.00 0.00 3.86
2759 4374 0.109964 TGATTTTTAGCACGCCACGC 60.110 50.000 0.00 0.00 0.00 5.34
2760 4375 1.196808 ACTGATTTTTAGCACGCCACG 59.803 47.619 0.00 0.00 0.00 4.94
2761 4376 2.989422 ACTGATTTTTAGCACGCCAC 57.011 45.000 0.00 0.00 0.00 5.01
2762 4377 3.637432 CAAACTGATTTTTAGCACGCCA 58.363 40.909 0.00 0.00 0.00 5.69
2763 4378 2.408368 GCAAACTGATTTTTAGCACGCC 59.592 45.455 0.00 0.00 0.00 5.68
2764 4379 3.049206 TGCAAACTGATTTTTAGCACGC 58.951 40.909 0.00 0.00 0.00 5.34
2765 4380 3.120121 GCTGCAAACTGATTTTTAGCACG 59.880 43.478 0.00 0.00 35.62 5.34
2766 4381 4.050553 TGCTGCAAACTGATTTTTAGCAC 58.949 39.130 0.00 0.00 38.39 4.40
2767 4382 4.050553 GTGCTGCAAACTGATTTTTAGCA 58.949 39.130 2.77 0.00 39.80 3.49
2768 4383 3.120121 CGTGCTGCAAACTGATTTTTAGC 59.880 43.478 2.77 0.00 35.89 3.09
2769 4384 3.120121 GCGTGCTGCAAACTGATTTTTAG 59.880 43.478 2.77 0.00 45.45 1.85
2770 4385 3.049206 GCGTGCTGCAAACTGATTTTTA 58.951 40.909 2.77 0.00 45.45 1.52
2771 4386 1.860326 GCGTGCTGCAAACTGATTTTT 59.140 42.857 2.77 0.00 45.45 1.94
2772 4387 1.490621 GCGTGCTGCAAACTGATTTT 58.509 45.000 2.77 0.00 45.45 1.82
2773 4388 3.184094 GCGTGCTGCAAACTGATTT 57.816 47.368 2.77 0.00 45.45 2.17
2774 4389 4.950744 GCGTGCTGCAAACTGATT 57.049 50.000 2.77 0.00 45.45 2.57
2784 4399 4.569023 TAGGCGATCGGCGTGCTG 62.569 66.667 32.35 0.00 44.92 4.41
2785 4400 4.570663 GTAGGCGATCGGCGTGCT 62.571 66.667 32.35 19.54 44.92 4.40
2786 4401 4.570663 AGTAGGCGATCGGCGTGC 62.571 66.667 32.35 25.10 44.92 5.34
2787 4402 0.248743 TAAAGTAGGCGATCGGCGTG 60.249 55.000 32.35 0.00 44.92 5.34
2788 4403 0.457035 TTAAAGTAGGCGATCGGCGT 59.543 50.000 32.35 23.17 44.92 5.68
2789 4404 0.850856 GTTAAAGTAGGCGATCGGCG 59.149 55.000 32.35 0.00 44.92 6.46
2790 4405 0.850856 CGTTAAAGTAGGCGATCGGC 59.149 55.000 32.17 32.17 42.51 5.54
2791 4406 0.850856 GCGTTAAAGTAGGCGATCGG 59.149 55.000 18.30 0.00 0.00 4.18
2792 4407 1.517276 CTGCGTTAAAGTAGGCGATCG 59.483 52.381 11.69 11.69 0.00 3.69
2793 4408 1.258197 GCTGCGTTAAAGTAGGCGATC 59.742 52.381 8.41 0.00 0.00 3.69
2794 4409 1.287425 GCTGCGTTAAAGTAGGCGAT 58.713 50.000 8.41 0.00 0.00 4.58
2795 4410 1.074319 CGCTGCGTTAAAGTAGGCGA 61.074 55.000 14.93 0.00 0.00 5.54
2796 4411 1.343821 CGCTGCGTTAAAGTAGGCG 59.656 57.895 14.93 8.29 0.00 5.52
2797 4412 1.702491 CCCGCTGCGTTAAAGTAGGC 61.702 60.000 21.59 1.01 0.00 3.93
2798 4413 0.108520 TCCCGCTGCGTTAAAGTAGG 60.109 55.000 21.59 12.00 0.00 3.18
2799 4414 1.278238 CTCCCGCTGCGTTAAAGTAG 58.722 55.000 21.59 2.25 0.00 2.57
2800 4415 0.738412 GCTCCCGCTGCGTTAAAGTA 60.738 55.000 21.59 0.00 0.00 2.24
2801 4416 2.033194 GCTCCCGCTGCGTTAAAGT 61.033 57.895 21.59 0.00 0.00 2.66
2802 4417 2.785258 GCTCCCGCTGCGTTAAAG 59.215 61.111 21.59 12.63 0.00 1.85
2825 4440 1.447317 ATTTATTGCGGCCGCTGGAG 61.447 55.000 45.79 10.53 42.51 3.86
2826 4441 1.034838 AATTTATTGCGGCCGCTGGA 61.035 50.000 45.79 32.49 42.51 3.86
2827 4442 0.179113 AAATTTATTGCGGCCGCTGG 60.179 50.000 45.79 11.81 42.51 4.85
2828 4443 2.384382 CTAAATTTATTGCGGCCGCTG 58.616 47.619 45.79 20.41 42.51 5.18
2829 4444 1.269051 GCTAAATTTATTGCGGCCGCT 60.269 47.619 45.79 31.94 42.51 5.52
2830 4445 1.128513 GCTAAATTTATTGCGGCCGC 58.871 50.000 42.35 42.35 42.35 6.53
2831 4446 1.394697 CGCTAAATTTATTGCGGCCG 58.605 50.000 24.05 24.05 43.97 6.13
2836 4451 0.156651 GCGCGCGCTAAATTTATTGC 59.843 50.000 44.38 16.88 38.26 3.56
2837 4452 0.421994 CGCGCGCGCTAAATTTATTG 59.578 50.000 45.97 26.31 39.32 1.90
2838 4453 2.765814 CGCGCGCGCTAAATTTATT 58.234 47.368 45.97 0.00 39.32 1.40
2839 4454 4.489683 CGCGCGCGCTAAATTTAT 57.510 50.000 45.97 0.00 39.32 1.40
2851 4466 4.914420 CTCCTGGAGCTACGCGCG 62.914 72.222 30.96 30.96 45.59 6.86
2852 4467 4.577246 CCTCCTGGAGCTACGCGC 62.577 72.222 18.51 0.00 39.57 6.86
2853 4468 4.577246 GCCTCCTGGAGCTACGCG 62.577 72.222 18.51 3.53 34.57 6.01
2854 4469 4.577246 CGCCTCCTGGAGCTACGC 62.577 72.222 18.51 14.44 34.57 4.42
2860 4475 2.852495 TTTTAGCGCGCCTCCTGGAG 62.852 60.000 30.33 17.02 36.16 3.86
2861 4476 2.252072 ATTTTAGCGCGCCTCCTGGA 62.252 55.000 30.33 8.06 34.57 3.86
2862 4477 1.819632 ATTTTAGCGCGCCTCCTGG 60.820 57.895 30.33 0.00 0.00 4.45
2863 4478 1.353103 CATTTTAGCGCGCCTCCTG 59.647 57.895 30.33 15.41 0.00 3.86
2864 4479 2.472909 GCATTTTAGCGCGCCTCCT 61.473 57.895 30.33 12.34 0.00 3.69
2865 4480 2.024729 GCATTTTAGCGCGCCTCC 59.975 61.111 30.33 5.56 0.00 4.30
2866 4481 1.297893 CTGCATTTTAGCGCGCCTC 60.298 57.895 30.33 9.55 37.31 4.70
2867 4482 2.793946 CTGCATTTTAGCGCGCCT 59.206 55.556 30.33 17.79 37.31 5.52
2868 4483 2.951227 GCTGCATTTTAGCGCGCC 60.951 61.111 30.33 11.28 37.31 6.53
2873 4488 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
2874 4489 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
2901 4516 1.066093 TGCAACATATGGCATGCGC 59.934 52.632 12.44 0.00 41.61 6.09
2906 4521 3.260128 TGTCCAAAATGCAACATATGGCA 59.740 39.130 7.80 8.36 45.23 4.92
2907 4522 3.618150 GTGTCCAAAATGCAACATATGGC 59.382 43.478 7.80 2.22 0.00 4.40
2908 4523 4.818642 TGTGTCCAAAATGCAACATATGG 58.181 39.130 7.80 0.00 0.00 2.74
2909 4524 6.782298 TTTGTGTCCAAAATGCAACATATG 57.218 33.333 0.00 0.00 37.62 1.78
2921 4536 6.596888 TGCTTGAAATTCATTTTGTGTCCAAA 59.403 30.769 0.00 0.00 38.77 3.28
2922 4537 6.111382 TGCTTGAAATTCATTTTGTGTCCAA 58.889 32.000 0.00 0.00 0.00 3.53
2923 4538 5.668471 TGCTTGAAATTCATTTTGTGTCCA 58.332 33.333 0.00 0.00 0.00 4.02
2924 4539 6.424509 TGATGCTTGAAATTCATTTTGTGTCC 59.575 34.615 0.00 0.00 0.00 4.02
2925 4540 7.410800 TGATGCTTGAAATTCATTTTGTGTC 57.589 32.000 0.00 0.00 0.00 3.67
2926 4541 7.789273 TTGATGCTTGAAATTCATTTTGTGT 57.211 28.000 0.00 0.00 0.00 3.72
2927 4542 8.949953 GTTTTGATGCTTGAAATTCATTTTGTG 58.050 29.630 0.00 0.00 0.00 3.33
2928 4543 8.675504 TGTTTTGATGCTTGAAATTCATTTTGT 58.324 25.926 0.00 0.00 0.00 2.83
2929 4544 9.504710 TTGTTTTGATGCTTGAAATTCATTTTG 57.495 25.926 0.00 0.00 0.00 2.44
2931 4546 9.724839 CTTTGTTTTGATGCTTGAAATTCATTT 57.275 25.926 0.00 0.00 0.00 2.32
2932 4547 9.111613 TCTTTGTTTTGATGCTTGAAATTCATT 57.888 25.926 0.00 0.00 0.00 2.57
2933 4548 8.553696 GTCTTTGTTTTGATGCTTGAAATTCAT 58.446 29.630 0.00 0.00 0.00 2.57
2934 4549 7.548427 TGTCTTTGTTTTGATGCTTGAAATTCA 59.452 29.630 0.00 0.00 0.00 2.57
2935 4550 7.908230 TGTCTTTGTTTTGATGCTTGAAATTC 58.092 30.769 0.00 0.00 0.00 2.17
2936 4551 7.846644 TGTCTTTGTTTTGATGCTTGAAATT 57.153 28.000 0.00 0.00 0.00 1.82
2937 4552 7.711772 TCATGTCTTTGTTTTGATGCTTGAAAT 59.288 29.630 0.00 0.00 0.00 2.17
2938 4553 7.010367 GTCATGTCTTTGTTTTGATGCTTGAAA 59.990 33.333 0.00 0.00 0.00 2.69
2939 4554 6.476380 GTCATGTCTTTGTTTTGATGCTTGAA 59.524 34.615 0.00 0.00 0.00 2.69
2940 4555 5.978919 GTCATGTCTTTGTTTTGATGCTTGA 59.021 36.000 0.00 0.00 0.00 3.02
2941 4556 5.749588 TGTCATGTCTTTGTTTTGATGCTTG 59.250 36.000 0.00 0.00 0.00 4.01
2942 4557 5.904941 TGTCATGTCTTTGTTTTGATGCTT 58.095 33.333 0.00 0.00 0.00 3.91
2943 4558 5.518848 TGTCATGTCTTTGTTTTGATGCT 57.481 34.783 0.00 0.00 0.00 3.79
2944 4559 7.872163 TTATGTCATGTCTTTGTTTTGATGC 57.128 32.000 0.00 0.00 0.00 3.91
2973 4588 9.234827 TGTCATCATGAACTTGTTTCTATGATT 57.765 29.630 0.00 4.21 38.75 2.57
2974 4589 8.797350 TGTCATCATGAACTTGTTTCTATGAT 57.203 30.769 0.00 12.00 39.96 2.45
2975 4590 8.797350 ATGTCATCATGAACTTGTTTCTATGA 57.203 30.769 0.00 9.61 36.76 2.15
2979 4594 9.903682 CTTTTATGTCATCATGAACTTGTTTCT 57.096 29.630 0.00 0.00 34.97 2.52
2980 4595 9.683069 ACTTTTATGTCATCATGAACTTGTTTC 57.317 29.630 0.00 0.00 35.70 2.78
2982 4597 9.683069 GAACTTTTATGTCATCATGAACTTGTT 57.317 29.630 0.00 0.00 35.70 2.83
2983 4598 8.849168 TGAACTTTTATGTCATCATGAACTTGT 58.151 29.630 0.00 0.00 35.70 3.16
2984 4599 9.850628 ATGAACTTTTATGTCATCATGAACTTG 57.149 29.630 0.00 0.00 35.70 3.16
2985 4600 9.850628 CATGAACTTTTATGTCATCATGAACTT 57.149 29.630 0.00 0.00 44.20 2.66
2986 4601 7.972277 GCATGAACTTTTATGTCATCATGAACT 59.028 33.333 15.51 0.00 44.20 3.01
2987 4602 7.221452 GGCATGAACTTTTATGTCATCATGAAC 59.779 37.037 15.51 0.00 44.20 3.18
2988 4603 7.259882 GGCATGAACTTTTATGTCATCATGAA 58.740 34.615 15.51 0.00 44.20 2.57
2989 4604 6.183360 GGGCATGAACTTTTATGTCATCATGA 60.183 38.462 15.51 0.00 44.20 3.07
2990 4605 5.981315 GGGCATGAACTTTTATGTCATCATG 59.019 40.000 0.00 8.73 44.24 3.07
2991 4606 5.657745 TGGGCATGAACTTTTATGTCATCAT 59.342 36.000 0.00 0.00 38.00 2.45
2992 4607 5.015515 TGGGCATGAACTTTTATGTCATCA 58.984 37.500 0.00 0.00 30.72 3.07
2993 4608 5.105797 TGTGGGCATGAACTTTTATGTCATC 60.106 40.000 0.00 0.00 30.72 2.92
2994 4609 4.771577 TGTGGGCATGAACTTTTATGTCAT 59.228 37.500 0.00 0.00 30.72 3.06
2995 4610 4.148079 TGTGGGCATGAACTTTTATGTCA 58.852 39.130 0.00 0.00 30.72 3.58
2996 4611 4.782019 TGTGGGCATGAACTTTTATGTC 57.218 40.909 0.00 0.00 0.00 3.06
2997 4612 4.588528 ACTTGTGGGCATGAACTTTTATGT 59.411 37.500 0.00 0.00 0.00 2.29
2998 4613 5.138125 ACTTGTGGGCATGAACTTTTATG 57.862 39.130 0.00 0.00 0.00 1.90
2999 4614 5.304101 TGAACTTGTGGGCATGAACTTTTAT 59.696 36.000 0.00 0.00 0.00 1.40
3000 4615 4.646945 TGAACTTGTGGGCATGAACTTTTA 59.353 37.500 0.00 0.00 0.00 1.52
3001 4616 3.450457 TGAACTTGTGGGCATGAACTTTT 59.550 39.130 0.00 0.00 0.00 2.27
3002 4617 3.030291 TGAACTTGTGGGCATGAACTTT 58.970 40.909 0.00 0.00 0.00 2.66
3003 4618 2.665165 TGAACTTGTGGGCATGAACTT 58.335 42.857 0.00 0.00 0.00 2.66
3004 4619 2.363306 TGAACTTGTGGGCATGAACT 57.637 45.000 0.00 0.00 0.00 3.01
3005 4620 3.451141 TTTGAACTTGTGGGCATGAAC 57.549 42.857 0.00 0.00 0.00 3.18
3006 4621 4.100653 TGAATTTGAACTTGTGGGCATGAA 59.899 37.500 0.00 0.00 0.00 2.57
3007 4622 3.640498 TGAATTTGAACTTGTGGGCATGA 59.360 39.130 0.00 0.00 0.00 3.07
3008 4623 3.992643 TGAATTTGAACTTGTGGGCATG 58.007 40.909 0.00 0.00 0.00 4.06
3009 4624 4.571919 CATGAATTTGAACTTGTGGGCAT 58.428 39.130 0.00 0.00 0.00 4.40
3010 4625 3.803021 GCATGAATTTGAACTTGTGGGCA 60.803 43.478 0.00 0.00 0.00 5.36
3011 4626 2.738314 GCATGAATTTGAACTTGTGGGC 59.262 45.455 0.00 0.00 0.00 5.36
3012 4627 3.328505 GGCATGAATTTGAACTTGTGGG 58.671 45.455 0.00 0.00 0.00 4.61
3013 4628 3.244146 TGGGCATGAATTTGAACTTGTGG 60.244 43.478 0.00 0.00 0.00 4.17
3014 4629 3.742369 GTGGGCATGAATTTGAACTTGTG 59.258 43.478 0.00 0.00 0.00 3.33
3015 4630 3.387374 TGTGGGCATGAATTTGAACTTGT 59.613 39.130 0.00 0.00 0.00 3.16
3016 4631 3.992643 TGTGGGCATGAATTTGAACTTG 58.007 40.909 0.00 0.00 0.00 3.16
3017 4632 4.101430 ACTTGTGGGCATGAATTTGAACTT 59.899 37.500 0.00 0.00 0.00 2.66
3018 4633 3.642848 ACTTGTGGGCATGAATTTGAACT 59.357 39.130 0.00 0.00 0.00 3.01
3019 4634 3.993920 ACTTGTGGGCATGAATTTGAAC 58.006 40.909 0.00 0.00 0.00 3.18
3020 4635 4.100653 TGAACTTGTGGGCATGAATTTGAA 59.899 37.500 0.00 0.00 0.00 2.69
3021 4636 3.640498 TGAACTTGTGGGCATGAATTTGA 59.360 39.130 0.00 0.00 0.00 2.69
3022 4637 3.992643 TGAACTTGTGGGCATGAATTTG 58.007 40.909 0.00 0.00 0.00 2.32
3023 4638 4.686191 TTGAACTTGTGGGCATGAATTT 57.314 36.364 0.00 0.00 0.00 1.82
3024 4639 4.686191 TTTGAACTTGTGGGCATGAATT 57.314 36.364 0.00 0.00 0.00 2.17
3025 4640 4.686191 TTTTGAACTTGTGGGCATGAAT 57.314 36.364 0.00 0.00 0.00 2.57
3026 4641 4.344679 AGATTTTGAACTTGTGGGCATGAA 59.655 37.500 0.00 0.00 0.00 2.57
3027 4642 3.896888 AGATTTTGAACTTGTGGGCATGA 59.103 39.130 0.00 0.00 0.00 3.07
3028 4643 3.991773 CAGATTTTGAACTTGTGGGCATG 59.008 43.478 0.00 0.00 0.00 4.06
3029 4644 3.896888 TCAGATTTTGAACTTGTGGGCAT 59.103 39.130 0.00 0.00 31.34 4.40
3030 4645 3.295093 TCAGATTTTGAACTTGTGGGCA 58.705 40.909 0.00 0.00 31.34 5.36
3031 4646 4.320608 TTCAGATTTTGAACTTGTGGGC 57.679 40.909 0.00 0.00 40.82 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.