Multiple sequence alignment - TraesCS2D01G137000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G137000 chr2D 100.000 3550 0 0 1 3550 80728873 80725324 0.000000e+00 6556.0
1 TraesCS2D01G137000 chr2D 79.381 194 32 6 2651 2837 43276641 43276449 2.880000e-26 130.0
2 TraesCS2D01G137000 chr2B 92.820 3482 142 42 1 3416 132340463 132337024 0.000000e+00 4946.0
3 TraesCS2D01G137000 chr2B 96.503 143 5 0 3408 3550 132335681 132335539 1.650000e-58 237.0
4 TraesCS2D01G137000 chr2A 92.244 3520 162 47 93 3550 81091008 81087538 0.000000e+00 4885.0
5 TraesCS2D01G137000 chr2A 94.545 55 2 1 1 54 81091183 81091129 2.270000e-12 84.2
6 TraesCS2D01G137000 chr3A 84.706 255 39 0 2694 2948 528524694 528524440 4.550000e-64 255.0
7 TraesCS2D01G137000 chr3A 77.219 338 64 7 3208 3533 738952654 738952990 6.050000e-43 185.0
8 TraesCS2D01G137000 chr3A 89.655 87 7 2 3017 3102 105553331 105553416 3.750000e-20 110.0
9 TraesCS2D01G137000 chr3A 89.655 87 7 2 3017 3102 593310150 593310065 3.750000e-20 110.0
10 TraesCS2D01G137000 chr5B 81.271 299 48 6 2626 2920 531951567 531951861 5.920000e-58 235.0
11 TraesCS2D01G137000 chr5B 79.279 222 32 11 2621 2834 542689880 542690095 3.690000e-30 143.0
12 TraesCS2D01G137000 chr3D 85.333 225 33 0 2724 2948 405815098 405814874 2.130000e-57 233.0
13 TraesCS2D01G137000 chr3D 78.070 342 58 14 3221 3548 310686082 310686420 2.160000e-47 200.0
14 TraesCS2D01G137000 chr3D 77.247 356 69 8 3207 3550 610408604 610408249 7.770000e-47 198.0
15 TraesCS2D01G137000 chr3D 77.811 338 62 10 3208 3533 606793234 606793570 2.800000e-46 196.0
16 TraesCS2D01G137000 chr3D 77.119 354 67 10 3208 3548 9842500 9842852 3.620000e-45 193.0
17 TraesCS2D01G137000 chr3D 88.889 90 9 1 3013 3102 433174629 433174541 3.750000e-20 110.0
18 TraesCS2D01G137000 chr1D 79.848 263 42 8 3207 3458 214836027 214836289 7.830000e-42 182.0
19 TraesCS2D01G137000 chr1D 79.775 267 39 12 3221 3474 435794621 435794357 2.820000e-41 180.0
20 TraesCS2D01G137000 chr4B 78.744 207 35 5 2621 2823 149568688 149568889 2.880000e-26 130.0
21 TraesCS2D01G137000 chr5D 77.828 221 38 8 2621 2834 505424446 505424662 3.720000e-25 126.0
22 TraesCS2D01G137000 chr6B 90.698 86 7 1 3017 3102 450074792 450074708 2.900000e-21 113.0
23 TraesCS2D01G137000 chrUn 89.655 87 7 2 3017 3102 345935602 345935687 3.750000e-20 110.0
24 TraesCS2D01G137000 chr7B 89.655 87 7 2 3017 3102 662751441 662751526 3.750000e-20 110.0
25 TraesCS2D01G137000 chr7B 73.991 223 45 9 2621 2836 2108181 2107965 1.060000e-10 78.7
26 TraesCS2D01G137000 chr5A 89.655 87 7 2 3017 3102 559028321 559028406 3.750000e-20 110.0
27 TraesCS2D01G137000 chr7A 75.336 223 43 7 2621 2836 260000962 260000745 2.920000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G137000 chr2D 80725324 80728873 3549 True 6556.0 6556 100.0000 1 3550 1 chr2D.!!$R2 3549
1 TraesCS2D01G137000 chr2B 132335539 132340463 4924 True 2591.5 4946 94.6615 1 3550 2 chr2B.!!$R1 3549
2 TraesCS2D01G137000 chr2A 81087538 81091183 3645 True 2484.6 4885 93.3945 1 3550 2 chr2A.!!$R1 3549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 282 0.178990 AGGTTTGGGTGAGGAAGTGC 60.179 55.0 0.00 0.0 0.0 4.40 F
694 857 0.179174 CGGCGCAAATACTTCCAACC 60.179 55.0 10.83 0.0 0.0 3.77 F
1473 1681 2.885135 TCATGGATGGAACTGCACTT 57.115 45.0 0.00 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1515 0.392729 ACTCCCTCGAGTCGTACAGG 60.393 60.0 13.12 11.89 46.90 4.00 R
1506 1714 0.458543 AGCGATCGACGAGCAATGTT 60.459 50.0 21.57 0.00 45.77 2.71 R
2907 3137 0.463654 TGGCAGGGTCGATGCATTAC 60.464 55.0 11.32 2.34 45.68 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 60 7.017319 TCCAGAGCTTGATTATCATCATCAT 57.983 36.000 0.00 0.00 39.28 2.45
58 61 7.104290 TCCAGAGCTTGATTATCATCATCATC 58.896 38.462 0.00 0.00 39.28 2.92
59 62 6.879458 CCAGAGCTTGATTATCATCATCATCA 59.121 38.462 0.00 0.00 39.28 3.07
89 182 9.235537 GCTAAAAAGTATTCTACTCGTTCCTAG 57.764 37.037 0.00 0.00 38.26 3.02
92 185 9.993454 AAAAAGTATTCTACTCGTTCCTAGTTT 57.007 29.630 0.00 0.00 38.26 2.66
93 186 9.636879 AAAAGTATTCTACTCGTTCCTAGTTTC 57.363 33.333 0.00 0.00 38.26 2.78
94 187 7.332213 AGTATTCTACTCGTTCCTAGTTTCC 57.668 40.000 0.00 0.00 32.47 3.13
95 188 7.118060 AGTATTCTACTCGTTCCTAGTTTCCT 58.882 38.462 0.00 0.00 32.47 3.36
96 189 5.640189 TTCTACTCGTTCCTAGTTTCCTG 57.360 43.478 0.00 0.00 0.00 3.86
97 190 2.745515 ACTCGTTCCTAGTTTCCTGC 57.254 50.000 0.00 0.00 0.00 4.85
98 191 1.275573 ACTCGTTCCTAGTTTCCTGCC 59.724 52.381 0.00 0.00 0.00 4.85
155 248 2.710377 TGTGGTGTGAATGGATGTAGC 58.290 47.619 0.00 0.00 0.00 3.58
173 266 1.961180 GCGGGACAGTGATAGCAGGT 61.961 60.000 0.00 0.00 0.00 4.00
189 282 0.178990 AGGTTTGGGTGAGGAAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
226 319 3.222603 ACCTGAGTGATTTTGGACCAAC 58.777 45.455 6.36 0.00 0.00 3.77
227 320 3.117512 ACCTGAGTGATTTTGGACCAACT 60.118 43.478 6.36 0.08 0.00 3.16
228 321 3.891366 CCTGAGTGATTTTGGACCAACTT 59.109 43.478 6.36 0.00 0.00 2.66
263 374 1.367659 ACACGAGACGAGGCTACTAC 58.632 55.000 0.00 0.00 0.00 2.73
264 375 1.338484 ACACGAGACGAGGCTACTACA 60.338 52.381 0.00 0.00 0.00 2.74
265 376 1.736126 CACGAGACGAGGCTACTACAA 59.264 52.381 0.00 0.00 0.00 2.41
266 377 2.008329 ACGAGACGAGGCTACTACAAG 58.992 52.381 0.00 0.00 0.00 3.16
267 378 1.268133 CGAGACGAGGCTACTACAAGC 60.268 57.143 0.00 0.00 41.99 4.01
268 379 1.743958 GAGACGAGGCTACTACAAGCA 59.256 52.381 0.00 0.00 44.64 3.91
269 380 2.359531 GAGACGAGGCTACTACAAGCAT 59.640 50.000 0.00 0.00 44.64 3.79
270 381 3.552875 AGACGAGGCTACTACAAGCATA 58.447 45.455 0.00 0.00 44.64 3.14
271 382 3.315749 AGACGAGGCTACTACAAGCATAC 59.684 47.826 0.00 0.00 44.64 2.39
272 383 2.361438 ACGAGGCTACTACAAGCATACC 59.639 50.000 0.00 0.00 44.64 2.73
273 384 2.288273 CGAGGCTACTACAAGCATACCC 60.288 54.545 0.00 0.00 44.64 3.69
274 385 2.966516 GAGGCTACTACAAGCATACCCT 59.033 50.000 0.00 0.00 44.64 4.34
275 386 4.150359 GAGGCTACTACAAGCATACCCTA 58.850 47.826 0.00 0.00 44.64 3.53
276 387 4.753186 AGGCTACTACAAGCATACCCTAT 58.247 43.478 0.00 0.00 44.64 2.57
277 388 5.900437 AGGCTACTACAAGCATACCCTATA 58.100 41.667 0.00 0.00 44.64 1.31
321 432 0.740737 GCACTTTGGCAGCGGAATAT 59.259 50.000 0.00 0.00 0.00 1.28
529 688 1.327303 GAGATGAGAGGCTCCATCGT 58.673 55.000 26.24 19.36 0.00 3.73
590 753 2.514592 CGGGGCTGGCATGTACTG 60.515 66.667 2.88 0.00 0.00 2.74
591 754 2.677228 GGGGCTGGCATGTACTGT 59.323 61.111 2.88 0.00 0.00 3.55
592 755 1.912220 GGGGCTGGCATGTACTGTA 59.088 57.895 2.88 0.00 0.00 2.74
593 756 0.463833 GGGGCTGGCATGTACTGTAC 60.464 60.000 10.98 10.98 0.00 2.90
594 757 0.541863 GGGCTGGCATGTACTGTACT 59.458 55.000 17.98 2.36 0.00 2.73
598 761 3.118738 GGCTGGCATGTACTGTACTAGTT 60.119 47.826 17.98 0.00 40.89 2.24
611 774 5.470777 ACTGTACTAGTTCGAGCATATCTCC 59.529 44.000 0.00 0.00 35.67 3.71
669 832 8.185506 ACACACAAATCCGAGGTATATATACA 57.814 34.615 21.56 4.14 34.98 2.29
670 833 8.086522 ACACACAAATCCGAGGTATATATACAC 58.913 37.037 21.56 14.38 34.98 2.90
694 857 0.179174 CGGCGCAAATACTTCCAACC 60.179 55.000 10.83 0.00 0.00 3.77
842 1008 3.214328 TCCTTCCTCACTTTGTTTCAGC 58.786 45.455 0.00 0.00 0.00 4.26
871 1037 4.616181 ACCGTTCTCAAAACACAAGAAG 57.384 40.909 0.00 0.00 30.07 2.85
872 1054 4.258543 ACCGTTCTCAAAACACAAGAAGA 58.741 39.130 0.00 0.00 30.07 2.87
876 1058 5.511729 CGTTCTCAAAACACAAGAAGAAACC 59.488 40.000 0.00 0.00 30.07 3.27
938 1133 3.687212 CGATCGATCCTCTGTGCTACTAT 59.313 47.826 19.51 0.00 0.00 2.12
1355 1559 3.980989 CGTCGACGTGGGGTTCCA 61.981 66.667 29.08 0.00 41.58 3.53
1473 1681 2.885135 TCATGGATGGAACTGCACTT 57.115 45.000 0.00 0.00 0.00 3.16
1523 1731 2.852413 ACTTAACATTGCTCGTCGATCG 59.148 45.455 9.36 9.36 41.41 3.69
1546 1754 1.372499 CAGGTTCGACGCCGAGAAA 60.372 57.895 0.00 0.00 46.39 2.52
1639 1847 1.227615 GCTCTGCATGCTCTCCTCC 60.228 63.158 20.33 0.00 0.00 4.30
1726 1934 0.116541 TCCTCTCCTTCCGGTTCCTT 59.883 55.000 0.00 0.00 0.00 3.36
1929 2137 4.950479 GCTCCAGCAGCTGTATGT 57.050 55.556 21.26 0.00 45.83 2.29
1930 2138 2.391469 GCTCCAGCAGCTGTATGTG 58.609 57.895 21.26 8.07 45.83 3.21
1936 2144 2.294233 CCAGCAGCTGTATGTGTGTTTT 59.706 45.455 21.26 0.00 0.00 2.43
1939 2147 5.090757 CAGCAGCTGTATGTGTGTTTTATG 58.909 41.667 16.64 0.00 0.00 1.90
1940 2148 4.156556 AGCAGCTGTATGTGTGTTTTATGG 59.843 41.667 16.64 0.00 0.00 2.74
1943 2158 6.489675 CAGCTGTATGTGTGTTTTATGGATC 58.510 40.000 5.25 0.00 0.00 3.36
1954 2169 7.009174 GTGTGTTTTATGGATCGCTTAAAATGG 59.991 37.037 13.23 0.00 30.19 3.16
1955 2170 6.019881 GTGTTTTATGGATCGCTTAAAATGGC 60.020 38.462 13.23 0.00 30.19 4.40
1958 2173 1.405105 TGGATCGCTTAAAATGGCTGC 59.595 47.619 0.00 0.00 0.00 5.25
1959 2174 1.678101 GGATCGCTTAAAATGGCTGCT 59.322 47.619 0.00 0.00 0.00 4.24
1960 2175 2.287248 GGATCGCTTAAAATGGCTGCTC 60.287 50.000 0.00 0.00 0.00 4.26
2104 2325 1.609501 TCCAGAAGGAGGTGGACGG 60.610 63.158 0.00 0.00 39.61 4.79
2106 2327 2.203788 AGAAGGAGGTGGACGGCA 60.204 61.111 0.00 0.00 0.00 5.69
2876 3106 3.625897 CAGAGGCCGTCACCACCA 61.626 66.667 0.00 0.00 0.00 4.17
2907 3137 4.815308 CCAATTCATCTTCAGAGCAGGTAG 59.185 45.833 0.00 0.00 0.00 3.18
2921 3151 2.755650 CAGGTAGTAATGCATCGACCC 58.244 52.381 12.27 6.51 31.38 4.46
3283 3513 9.295825 CTACATAGGCAAATGGACCATAATAAA 57.704 33.333 7.59 0.00 0.00 1.40
3399 3629 6.515272 AAGATTGAACGCTATTTGGATGTT 57.485 33.333 0.00 0.00 0.00 2.71
3419 5000 1.160946 TGGCGCGCAAACTTGAACTA 61.161 50.000 34.42 0.46 0.00 2.24
3480 5061 4.389374 TGCTACACTTCTTCTTTCCTTGG 58.611 43.478 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 166 5.394333 GCAGGAAACTAGGAACGAGTAGAAT 60.394 44.000 0.00 0.00 45.31 2.40
76 169 3.429135 GGCAGGAAACTAGGAACGAGTAG 60.429 52.174 0.00 0.00 45.31 2.57
89 182 1.452108 CTCATCGGGGGCAGGAAAC 60.452 63.158 0.00 0.00 0.00 2.78
91 184 2.539277 TACCTCATCGGGGGCAGGAA 62.539 60.000 0.00 0.00 36.97 3.36
92 185 2.326529 ATACCTCATCGGGGGCAGGA 62.327 60.000 0.00 0.00 36.97 3.86
93 186 1.418908 AATACCTCATCGGGGGCAGG 61.419 60.000 0.00 0.00 36.97 4.85
94 187 0.474184 AAATACCTCATCGGGGGCAG 59.526 55.000 0.00 0.00 36.97 4.85
95 188 1.697432 CTAAATACCTCATCGGGGGCA 59.303 52.381 0.00 0.00 36.97 5.36
96 189 1.610886 GCTAAATACCTCATCGGGGGC 60.611 57.143 0.00 0.00 36.97 5.80
97 190 1.978580 AGCTAAATACCTCATCGGGGG 59.021 52.381 0.00 0.00 36.97 5.40
98 191 2.632996 TGAGCTAAATACCTCATCGGGG 59.367 50.000 0.00 0.00 36.97 5.73
155 248 0.537188 AACCTGCTATCACTGTCCCG 59.463 55.000 0.00 0.00 0.00 5.14
173 266 0.843309 TCTGCACTTCCTCACCCAAA 59.157 50.000 0.00 0.00 0.00 3.28
189 282 1.088306 AGGTTCGTCTCGCTAGTCTG 58.912 55.000 0.00 0.00 0.00 3.51
226 319 5.806286 TCGTGTTTAAGCAAGAACAAGAAG 58.194 37.500 5.52 1.59 39.87 2.85
227 320 5.583061 TCTCGTGTTTAAGCAAGAACAAGAA 59.417 36.000 9.02 5.33 41.36 2.52
228 321 5.006358 GTCTCGTGTTTAAGCAAGAACAAGA 59.994 40.000 9.02 11.73 40.30 3.02
263 374 5.637810 CGTGGTGTTATATAGGGTATGCTTG 59.362 44.000 0.00 0.00 0.00 4.01
264 375 5.541101 TCGTGGTGTTATATAGGGTATGCTT 59.459 40.000 0.00 0.00 0.00 3.91
265 376 5.081728 TCGTGGTGTTATATAGGGTATGCT 58.918 41.667 0.00 0.00 0.00 3.79
266 377 5.395682 TCGTGGTGTTATATAGGGTATGC 57.604 43.478 0.00 0.00 0.00 3.14
267 378 7.211573 TGTTTCGTGGTGTTATATAGGGTATG 58.788 38.462 0.00 0.00 0.00 2.39
268 379 7.364149 TGTTTCGTGGTGTTATATAGGGTAT 57.636 36.000 0.00 0.00 0.00 2.73
269 380 6.788598 TGTTTCGTGGTGTTATATAGGGTA 57.211 37.500 0.00 0.00 0.00 3.69
270 381 5.680594 TGTTTCGTGGTGTTATATAGGGT 57.319 39.130 0.00 0.00 0.00 4.34
271 382 6.202188 GTCATGTTTCGTGGTGTTATATAGGG 59.798 42.308 0.00 0.00 0.00 3.53
272 383 6.074516 CGTCATGTTTCGTGGTGTTATATAGG 60.075 42.308 0.00 0.00 0.00 2.57
273 384 6.693978 TCGTCATGTTTCGTGGTGTTATATAG 59.306 38.462 0.00 0.00 0.00 1.31
274 385 6.562518 TCGTCATGTTTCGTGGTGTTATATA 58.437 36.000 0.00 0.00 0.00 0.86
275 386 5.412640 TCGTCATGTTTCGTGGTGTTATAT 58.587 37.500 0.00 0.00 0.00 0.86
276 387 4.807443 TCGTCATGTTTCGTGGTGTTATA 58.193 39.130 0.00 0.00 0.00 0.98
277 388 3.655486 TCGTCATGTTTCGTGGTGTTAT 58.345 40.909 0.00 0.00 0.00 1.89
375 486 2.046507 GCAGAGAGCTGGTGTGGG 60.047 66.667 0.00 0.00 42.53 4.61
590 753 5.935789 AGAGGAGATATGCTCGAACTAGTAC 59.064 44.000 3.02 0.00 44.91 2.73
591 754 6.014070 AGAGAGGAGATATGCTCGAACTAGTA 60.014 42.308 3.02 0.00 44.91 1.82
592 755 4.980573 AGAGGAGATATGCTCGAACTAGT 58.019 43.478 3.02 0.00 44.91 2.57
593 756 5.245531 AGAGAGGAGATATGCTCGAACTAG 58.754 45.833 3.02 0.00 44.91 2.57
594 757 5.235850 AGAGAGGAGATATGCTCGAACTA 57.764 43.478 3.02 0.00 44.91 2.24
598 761 4.071423 CAGAAGAGAGGAGATATGCTCGA 58.929 47.826 3.02 0.00 44.91 4.04
611 774 2.735663 GTGTGCACATGTCAGAAGAGAG 59.264 50.000 24.69 0.00 0.00 3.20
740 903 0.038744 AGTGGAGGGAACTTGGCATG 59.961 55.000 0.00 0.00 44.43 4.06
742 905 0.690762 GTAGTGGAGGGAACTTGGCA 59.309 55.000 0.00 0.00 44.43 4.92
751 914 4.514577 CGCGCTGGTAGTGGAGGG 62.515 72.222 5.56 0.00 0.00 4.30
842 1008 2.748461 TTTGAGAACGGTTGCTTTCG 57.252 45.000 0.00 0.00 0.00 3.46
871 1037 4.222114 CGTGAAAAATCTGCTCTGGTTTC 58.778 43.478 0.00 0.00 0.00 2.78
872 1054 3.550842 GCGTGAAAAATCTGCTCTGGTTT 60.551 43.478 0.00 0.00 0.00 3.27
876 1058 1.536766 TGGCGTGAAAAATCTGCTCTG 59.463 47.619 0.00 0.00 0.00 3.35
998 1196 0.107268 CGCCATCTCCATGACCATGA 59.893 55.000 11.28 0.00 41.20 3.07
1195 1396 2.949106 GTCTCCGTCCGTCGTCAA 59.051 61.111 0.00 0.00 37.94 3.18
1311 1515 0.392729 ACTCCCTCGAGTCGTACAGG 60.393 60.000 13.12 11.89 46.90 4.00
1335 1539 1.300080 GAACCCCACGTCGACGAAA 60.300 57.895 41.52 0.00 43.02 3.46
1453 1661 2.885135 AGTGCAGTTCCATCCATGAA 57.115 45.000 0.00 0.00 0.00 2.57
1492 1700 8.145316 ACGAGCAATGTTAAGTTGTTAACTAA 57.855 30.769 7.22 0.00 45.75 2.24
1493 1701 7.358600 CGACGAGCAATGTTAAGTTGTTAACTA 60.359 37.037 7.22 0.00 45.75 2.24
1495 1703 5.558888 CGACGAGCAATGTTAAGTTGTTAAC 59.441 40.000 0.00 0.00 45.75 2.01
1496 1704 5.462729 TCGACGAGCAATGTTAAGTTGTTAA 59.537 36.000 0.00 0.00 0.00 2.01
1497 1705 4.983538 TCGACGAGCAATGTTAAGTTGTTA 59.016 37.500 0.00 0.00 0.00 2.41
1498 1706 3.805422 TCGACGAGCAATGTTAAGTTGTT 59.195 39.130 0.00 0.00 0.00 2.83
1499 1707 3.386486 TCGACGAGCAATGTTAAGTTGT 58.614 40.909 0.00 0.00 0.00 3.32
1500 1708 4.569029 GATCGACGAGCAATGTTAAGTTG 58.431 43.478 8.48 0.00 0.00 3.16
1501 1709 3.303495 CGATCGACGAGCAATGTTAAGTT 59.697 43.478 10.26 0.00 45.77 2.66
1502 1710 2.852413 CGATCGACGAGCAATGTTAAGT 59.148 45.455 10.26 0.00 45.77 2.24
1503 1711 2.346741 GCGATCGACGAGCAATGTTAAG 60.347 50.000 21.57 0.00 45.77 1.85
1504 1712 1.586578 GCGATCGACGAGCAATGTTAA 59.413 47.619 21.57 0.00 45.77 2.01
1505 1713 1.197055 GCGATCGACGAGCAATGTTA 58.803 50.000 21.57 0.00 45.77 2.41
1506 1714 0.458543 AGCGATCGACGAGCAATGTT 60.459 50.000 21.57 0.00 45.77 2.71
1523 1731 4.090057 GGCGTCGAACCTGCAAGC 62.090 66.667 0.00 0.00 0.00 4.01
1834 2042 2.364973 TGCGCCCTGGAGTCCATA 60.365 61.111 13.56 0.00 30.82 2.74
1929 2137 7.032580 CCATTTTAAGCGATCCATAAAACACA 58.967 34.615 6.97 0.00 32.97 3.72
1930 2138 6.019881 GCCATTTTAAGCGATCCATAAAACAC 60.020 38.462 6.97 0.00 32.97 3.32
1936 2144 3.253188 GCAGCCATTTTAAGCGATCCATA 59.747 43.478 0.00 0.00 0.00 2.74
1939 2147 1.678101 AGCAGCCATTTTAAGCGATCC 59.322 47.619 0.00 0.00 0.00 3.36
1940 2148 2.287248 GGAGCAGCCATTTTAAGCGATC 60.287 50.000 0.00 0.00 36.34 3.69
1943 2158 1.064654 GAGGAGCAGCCATTTTAAGCG 59.935 52.381 0.00 0.00 40.02 4.68
1954 2169 3.036429 ATGGAACCCGAGGAGCAGC 62.036 63.158 0.00 0.00 0.00 5.25
1955 2170 1.153289 CATGGAACCCGAGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
1958 2173 1.915078 AAGCCATGGAACCCGAGGAG 61.915 60.000 18.40 0.00 0.00 3.69
1959 2174 1.923395 AAGCCATGGAACCCGAGGA 60.923 57.895 18.40 0.00 0.00 3.71
1960 2175 1.750399 CAAGCCATGGAACCCGAGG 60.750 63.158 18.40 0.00 0.00 4.63
2106 2327 4.335647 CACGGCCAGGGTCTTGCT 62.336 66.667 2.24 0.00 0.00 3.91
2672 2901 3.168035 ACAAGGATGTTGCCAATGGTA 57.832 42.857 0.00 0.00 35.91 3.25
2720 2950 2.903784 AGTATGCAGCCCCGACAATATA 59.096 45.455 0.00 0.00 0.00 0.86
2870 3100 4.329638 TGAATTGGTGGAATATGGTGGT 57.670 40.909 0.00 0.00 0.00 4.16
2875 3105 7.521748 GCTCTGAAGATGAATTGGTGGAATATG 60.522 40.741 0.00 0.00 0.00 1.78
2876 3106 6.489361 GCTCTGAAGATGAATTGGTGGAATAT 59.511 38.462 0.00 0.00 0.00 1.28
2907 3137 0.463654 TGGCAGGGTCGATGCATTAC 60.464 55.000 11.32 2.34 45.68 1.89
3283 3513 6.322456 TGCTAATAAGAGTGAGAGTGTATGCT 59.678 38.462 0.00 0.00 0.00 3.79
3399 3629 1.587613 GTTCAAGTTTGCGCGCCAA 60.588 52.632 30.77 22.53 0.00 4.52
3419 5000 4.646492 AGACAATCAAGCACCACTTTTTCT 59.354 37.500 0.00 0.00 36.04 2.52
3480 5061 6.897259 AGATAACATCATTGTTGCAATTGC 57.103 33.333 23.69 23.69 45.56 3.56
3519 5100 2.569059 CGTGTAGTATCTTCGGAGGGA 58.431 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.