Multiple sequence alignment - TraesCS2D01G134700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS2D01G134700
chr2D
100.000
3614
0
0
1
3614
79235079
79231466
0.000000e+00
6674.0
1
TraesCS2D01G134700
chr2D
84.135
208
24
7
978
1176
79332906
79332699
3.680000e-45
193.0
2
TraesCS2D01G134700
chr2D
90.909
66
6
0
1050
1115
79260110
79260045
4.970000e-14
89.8
3
TraesCS2D01G134700
chr2B
92.586
3318
146
48
326
3614
123102658
123099412
0.000000e+00
4673.0
4
TraesCS2D01G134700
chr2B
88.786
651
60
6
321
965
128260180
128259537
0.000000e+00
785.0
5
TraesCS2D01G134700
chr2B
87.569
362
44
1
1
362
128260672
128260312
5.580000e-113
418.0
6
TraesCS2D01G134700
chr2B
87.324
355
44
1
1
355
123103156
123102803
4.350000e-109
405.0
7
TraesCS2D01G134700
chr2B
88.053
226
22
3
980
1201
128312186
128311962
2.770000e-66
263.0
8
TraesCS2D01G134700
chr2B
85.350
157
13
5
1050
1198
123130275
123130121
1.740000e-33
154.0
9
TraesCS2D01G134700
chr2A
91.504
3237
143
40
344
3521
79443652
79440489
0.000000e+00
4333.0
10
TraesCS2D01G134700
chr2A
83.651
367
50
9
6
362
79444206
79443840
1.610000e-88
337.0
11
TraesCS2D01G134700
chr2A
80.556
288
31
15
978
1250
79498147
79497870
7.910000e-47
198.0
12
TraesCS2D01G134700
chr2A
89.677
155
12
3
1048
1198
79541133
79540979
1.020000e-45
195.0
13
TraesCS2D01G134700
chr1B
76.636
1070
195
53
1496
2542
20836132
20835095
1.140000e-149
540.0
14
TraesCS2D01G134700
chr1B
81.117
376
65
5
2204
2578
401603918
401604288
2.730000e-76
296.0
15
TraesCS2D01G134700
chr1D
76.323
1077
192
55
1496
2542
15049761
15048718
5.350000e-143
518.0
16
TraesCS2D01G134700
chr1D
82.692
364
56
5
2218
2578
298548130
298548489
2.090000e-82
316.0
17
TraesCS2D01G134700
chr1A
76.297
983
185
44
1571
2533
15517199
15518153
7.020000e-132
481.0
18
TraesCS2D01G134700
chr1A
82.748
313
53
1
2218
2530
372195254
372195565
9.880000e-71
278.0
19
TraesCS2D01G134700
chr1A
81.448
221
40
1
2288
2508
372197321
372197540
2.870000e-41
180.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS2D01G134700
chr2D
79231466
79235079
3613
True
6674.0
6674
100.0000
1
3614
1
chr2D.!!$R1
3613
1
TraesCS2D01G134700
chr2B
123099412
123103156
3744
True
2539.0
4673
89.9550
1
3614
2
chr2B.!!$R3
3613
2
TraesCS2D01G134700
chr2B
128259537
128260672
1135
True
601.5
785
88.1775
1
965
2
chr2B.!!$R4
964
3
TraesCS2D01G134700
chr2A
79440489
79444206
3717
True
2335.0
4333
87.5775
6
3521
2
chr2A.!!$R3
3515
4
TraesCS2D01G134700
chr1B
20835095
20836132
1037
True
540.0
540
76.6360
1496
2542
1
chr1B.!!$R1
1046
5
TraesCS2D01G134700
chr1D
15048718
15049761
1043
True
518.0
518
76.3230
1496
2542
1
chr1D.!!$R1
1046
6
TraesCS2D01G134700
chr1A
15517199
15518153
954
False
481.0
481
76.2970
1571
2533
1
chr1A.!!$F1
962
7
TraesCS2D01G134700
chr1A
372195254
372197540
2286
False
229.0
278
82.0980
2218
2530
2
chr1A.!!$F2
312
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
63
64
0.307760
GCACCATACATAAGCCACGC
59.692
55.0
0.00
0.0
0.00
5.34
F
603
838
0.389296
TGGCGTACGATGGAAGTGTG
60.389
55.0
21.65
0.0
0.00
3.82
F
1328
1581
0.320508
CAGCAGCAGCAGAGTGAGAA
60.321
55.0
3.17
0.0
45.49
2.87
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1323
1576
1.667154
CGATCCCGGAGCACTTCTCA
61.667
60.000
0.73
0.00
43.70
3.27
R
2361
4654
1.137404
CTTGTACCCGACGTACCGG
59.863
63.158
8.64
8.64
45.89
5.28
R
2897
5254
0.108898
CTTCCTCCGCTCACTGTCTG
60.109
60.000
0.00
0.00
0.00
3.51
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
52
53
3.056107
TGTCTGGTCAACTAGCACCATAC
60.056
47.826
13.63
13.63
41.97
2.39
63
64
0.307760
GCACCATACATAAGCCACGC
59.692
55.000
0.00
0.00
0.00
5.34
107
114
3.689649
ACCAGCCTCATAAAAGTAAAGCG
59.310
43.478
0.00
0.00
0.00
4.68
112
119
3.308866
CCTCATAAAAGTAAAGCGTCCGG
59.691
47.826
0.00
0.00
0.00
5.14
120
127
4.942761
AGTAAAGCGTCCGGGATATAAA
57.057
40.909
0.00
0.00
0.00
1.40
130
137
3.139077
CCGGGATATAAAGGCTTCACAC
58.861
50.000
0.00
0.00
0.00
3.82
153
160
9.944376
ACACAAATTGTCTATGTATACTTCTGT
57.056
29.630
4.17
0.00
29.79
3.41
209
216
3.060602
GCACACTAGAAGGACACAAGAC
58.939
50.000
0.00
0.00
0.00
3.01
213
220
2.288273
ACTAGAAGGACACAAGACGCAC
60.288
50.000
0.00
0.00
0.00
5.34
221
228
1.333619
ACACAAGACGCACATTTGGTC
59.666
47.619
0.00
0.00
0.00
4.02
276
287
9.445786
AAAAGAACATTTATACAACGAACACAG
57.554
29.630
0.00
0.00
0.00
3.66
293
304
3.381590
ACACAGATCTAGCATCTAACGCA
59.618
43.478
0.00
0.00
0.00
5.24
317
368
1.436195
GCGGCGCAACAAGATATGGA
61.436
55.000
29.21
0.00
0.00
3.41
324
375
4.032217
GCGCAACAAGATATGGATCTATCG
59.968
45.833
0.30
0.00
41.87
2.92
342
393
2.362736
TCGTCTAATGCGACACTAGGT
58.637
47.619
0.00
0.00
33.54
3.08
355
406
4.870426
CGACACTAGGTGCAACAAGATATT
59.130
41.667
3.64
0.00
39.98
1.28
402
518
1.064060
ACTCTGAAGTGTTGCGTTTGC
59.936
47.619
0.00
0.00
36.47
3.68
416
651
4.084447
GCGTTTGCGAGTTGTTTTAAAG
57.916
40.909
0.00
0.00
41.33
1.85
424
659
3.545228
CGAGTTGTTTTAAAGCGAGCACA
60.545
43.478
0.00
0.00
0.00
4.57
431
666
6.244999
TGTTTTAAAGCGAGCACAATATACG
58.755
36.000
0.00
0.00
0.00
3.06
466
701
5.099042
AGACCACACCGCTTTATCTAAAT
57.901
39.130
0.00
0.00
0.00
1.40
485
720
3.972950
ATGACTATTCTCCGTCACTCG
57.027
47.619
0.00
0.00
42.32
4.18
523
758
3.366374
GGAGTGGCTACAAATCAAGCAAC
60.366
47.826
2.02
0.00
42.06
4.17
525
760
1.539388
TGGCTACAAATCAAGCAACGG
59.461
47.619
0.00
0.00
40.61
4.44
547
782
2.082354
GCGGGAAAAGCGAGAAGAG
58.918
57.895
0.00
0.00
0.00
2.85
603
838
0.389296
TGGCGTACGATGGAAGTGTG
60.389
55.000
21.65
0.00
0.00
3.82
634
869
9.768662
CTGAATATATGGCTGGCTTTAATTTTT
57.231
29.630
2.00
0.00
0.00
1.94
666
902
8.491331
AGAGAAAAGAATGTGAGAAGATAAGC
57.509
34.615
0.00
0.00
0.00
3.09
667
903
7.552330
AGAGAAAAGAATGTGAGAAGATAAGCC
59.448
37.037
0.00
0.00
0.00
4.35
737
973
2.617274
GCTTTGCGCCGATATCCCC
61.617
63.158
4.18
0.00
0.00
4.81
738
974
1.227823
CTTTGCGCCGATATCCCCA
60.228
57.895
4.18
0.00
0.00
4.96
740
976
2.951475
TTTGCGCCGATATCCCCACC
62.951
60.000
4.18
0.00
0.00
4.61
777
1014
4.821260
GCAATCAAAGGACCCACAATTTTT
59.179
37.500
0.00
0.00
0.00
1.94
800
1037
1.710244
TCAAGGATGTTCCATGGGTGT
59.290
47.619
13.02
0.00
39.61
4.16
854
1091
2.031683
CCTCTAACCGCCGCTAATTTTG
59.968
50.000
0.00
0.00
0.00
2.44
868
1107
4.096532
GCTAATTTTGTACTCCCTTCTGCC
59.903
45.833
0.00
0.00
0.00
4.85
887
1126
1.523758
CGTGCCATTTATAGCTCCCC
58.476
55.000
0.00
0.00
0.00
4.81
931
1170
2.158519
ACAATCCAAAACCCCGAGAACT
60.159
45.455
0.00
0.00
0.00
3.01
973
1217
2.169769
TCCCTTCGACTCTCTCTCTCTC
59.830
54.545
0.00
0.00
0.00
3.20
974
1218
2.170607
CCCTTCGACTCTCTCTCTCTCT
59.829
54.545
0.00
0.00
0.00
3.10
1204
1448
4.760047
TGAGCGGCTTCTTCGGCC
62.760
66.667
2.97
0.00
45.57
6.13
1323
1576
4.311445
ACGCAGCAGCAGCAGAGT
62.311
61.111
10.77
0.00
45.49
3.24
1327
1580
1.292541
CAGCAGCAGCAGAGTGAGA
59.707
57.895
3.17
0.00
45.49
3.27
1328
1581
0.320508
CAGCAGCAGCAGAGTGAGAA
60.321
55.000
3.17
0.00
45.49
2.87
2602
4895
0.890090
CCGGCCGAAAACCAAACCTA
60.890
55.000
30.73
0.00
0.00
3.08
2692
4993
8.697507
AGATCAAAATTTACAGACACCTTTCT
57.302
30.769
0.00
0.00
0.00
2.52
2693
4994
8.787852
AGATCAAAATTTACAGACACCTTTCTC
58.212
33.333
0.00
0.00
0.00
2.87
2694
4995
8.697507
ATCAAAATTTACAGACACCTTTCTCT
57.302
30.769
0.00
0.00
0.00
3.10
2698
4999
5.470047
TTTACAGACACCTTTCTCTCTCC
57.530
43.478
0.00
0.00
0.00
3.71
2763
5096
8.681486
TCATACCTGACCATTCATTTCATTAG
57.319
34.615
0.00
0.00
0.00
1.73
2764
5097
8.493607
TCATACCTGACCATTCATTTCATTAGA
58.506
33.333
0.00
0.00
0.00
2.10
2765
5098
9.293404
CATACCTGACCATTCATTTCATTAGAT
57.707
33.333
0.00
0.00
0.00
1.98
2766
5099
9.872684
ATACCTGACCATTCATTTCATTAGATT
57.127
29.630
0.00
0.00
0.00
2.40
2767
5100
8.004087
ACCTGACCATTCATTTCATTAGATTG
57.996
34.615
0.00
0.00
0.00
2.67
2768
5101
7.616935
ACCTGACCATTCATTTCATTAGATTGT
59.383
33.333
0.00
0.00
0.00
2.71
2769
5102
8.472413
CCTGACCATTCATTTCATTAGATTGTT
58.528
33.333
0.00
0.00
0.00
2.83
2783
5116
9.996554
TCATTAGATTGTTACTCTCTGTTTTGA
57.003
29.630
0.00
0.00
0.00
2.69
2785
5118
6.771188
AGATTGTTACTCTCTGTTTTGACG
57.229
37.500
0.00
0.00
0.00
4.35
2786
5119
4.789095
TTGTTACTCTCTGTTTTGACGC
57.211
40.909
0.00
0.00
0.00
5.19
2787
5120
4.054780
TGTTACTCTCTGTTTTGACGCT
57.945
40.909
0.00
0.00
0.00
5.07
2788
5121
4.439057
TGTTACTCTCTGTTTTGACGCTT
58.561
39.130
0.00
0.00
0.00
4.68
2789
5122
4.506654
TGTTACTCTCTGTTTTGACGCTTC
59.493
41.667
0.00
0.00
0.00
3.86
2790
5123
3.179443
ACTCTCTGTTTTGACGCTTCA
57.821
42.857
0.00
0.00
0.00
3.02
2791
5124
3.733337
ACTCTCTGTTTTGACGCTTCAT
58.267
40.909
0.00
0.00
0.00
2.57
2792
5125
4.130118
ACTCTCTGTTTTGACGCTTCATT
58.870
39.130
0.00
0.00
0.00
2.57
2793
5126
5.297547
ACTCTCTGTTTTGACGCTTCATTA
58.702
37.500
0.00
0.00
0.00
1.90
2834
5167
0.249447
GATGTGCCCGTGATCGATCA
60.249
55.000
23.99
23.99
39.71
2.92
2895
5252
4.481930
TCAGTTACAATTTTGCGTCCTG
57.518
40.909
0.00
0.00
0.00
3.86
2896
5253
4.130857
TCAGTTACAATTTTGCGTCCTGA
58.869
39.130
0.00
0.00
0.00
3.86
2897
5254
4.024387
TCAGTTACAATTTTGCGTCCTGAC
60.024
41.667
0.00
0.00
0.00
3.51
2898
5255
3.880490
AGTTACAATTTTGCGTCCTGACA
59.120
39.130
0.00
0.00
0.00
3.58
2929
5291
3.093278
GGAAGATTCCTGCGTGCG
58.907
61.111
4.29
0.00
44.11
5.34
3013
5375
0.320421
GTGAACCGCCTCTGCTGTTA
60.320
55.000
0.00
0.00
43.76
2.41
3015
5377
0.320421
GAACCGCCTCTGCTGTTACA
60.320
55.000
0.00
0.00
43.76
2.41
3181
5576
4.263156
GGGTTGGTTGGAACATACTAGTCA
60.263
45.833
0.00
0.00
39.30
3.41
3231
5626
5.556915
TGATAATTAGTGGGCCGATAAAGG
58.443
41.667
0.00
0.00
0.00
3.11
3233
5628
3.945640
ATTAGTGGGCCGATAAAGGTT
57.054
42.857
0.00
0.00
0.00
3.50
3234
5629
2.702592
TAGTGGGCCGATAAAGGTTG
57.297
50.000
0.00
0.00
0.00
3.77
3257
5652
4.007644
CCACCAGCAGTGCTCGGA
62.008
66.667
29.06
0.00
45.83
4.55
3287
5688
3.423154
GGCTGCAGGTGCGTGTAC
61.423
66.667
17.12
0.00
45.83
2.90
3328
5729
1.632589
TCTACTGCTGCCACTGAAGA
58.367
50.000
0.00
0.00
0.00
2.87
3329
5730
1.273606
TCTACTGCTGCCACTGAAGAC
59.726
52.381
0.00
0.00
0.00
3.01
3330
5731
1.274728
CTACTGCTGCCACTGAAGACT
59.725
52.381
0.00
0.00
0.00
3.24
3331
5732
0.250209
ACTGCTGCCACTGAAGACTG
60.250
55.000
0.00
0.00
0.00
3.51
3428
5831
2.046507
CAGGCCAGTCACTGCCTC
60.047
66.667
15.57
0.85
36.43
4.70
3436
5839
1.476085
CAGTCACTGCCTCACCTAGAG
59.524
57.143
0.00
0.00
44.31
2.43
3508
5914
3.952323
CTGGGTAAGTCTAGAACCGATGA
59.048
47.826
6.09
0.00
33.89
2.92
3521
5927
1.337728
ACCGATGAACACGCTTGATCA
60.338
47.619
5.63
5.63
38.74
2.92
3533
5939
4.327357
CACGCTTGATCAGATCGTTACTTT
59.673
41.667
13.73
0.00
0.00
2.66
3536
5942
4.494855
GCTTGATCAGATCGTTACTTTGGC
60.495
45.833
5.91
0.00
0.00
4.52
3567
5973
6.145696
GCCAGTGAGTAAAAACAGTACTGTAG
59.854
42.308
28.13
2.79
44.13
2.74
3596
6002
5.173664
GGATTTGCCTTGGATTTGAAGAAG
58.826
41.667
0.00
0.00
0.00
2.85
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
3
4
3.316071
TTCAACGCCGGTATAACTCAA
57.684
42.857
1.90
0.00
0.00
3.02
13
14
2.936498
AGACATCTTTATTCAACGCCGG
59.064
45.455
0.00
0.00
0.00
6.13
17
18
6.147821
AGTTGACCAGACATCTTTATTCAACG
59.852
38.462
0.00
0.00
44.01
4.10
76
83
1.067295
ATGAGGCTGGTGGTCTTCAA
58.933
50.000
0.00
0.00
0.00
2.69
77
84
1.951209
TATGAGGCTGGTGGTCTTCA
58.049
50.000
0.00
0.00
0.00
3.02
82
89
4.650972
TTACTTTTATGAGGCTGGTGGT
57.349
40.909
0.00
0.00
0.00
4.16
90
97
3.308866
CCGGACGCTTTACTTTTATGAGG
59.691
47.826
0.00
0.00
0.00
3.86
107
114
3.181458
TGTGAAGCCTTTATATCCCGGAC
60.181
47.826
0.73
0.00
0.00
4.79
112
119
7.547227
ACAATTTGTGTGAAGCCTTTATATCC
58.453
34.615
0.15
0.00
39.72
2.59
120
127
5.072741
ACATAGACAATTTGTGTGAAGCCT
58.927
37.500
6.80
0.00
41.96
4.58
153
160
7.362574
CCTCAAAACAAACACCTACAAAGAAGA
60.363
37.037
0.00
0.00
0.00
2.87
209
216
6.949578
AAATTAAGAATGACCAAATGTGCG
57.050
33.333
0.00
0.00
0.00
5.34
253
262
7.956420
TCTGTGTTCGTTGTATAAATGTTCT
57.044
32.000
0.00
0.00
0.00
3.01
268
279
4.672862
CGTTAGATGCTAGATCTGTGTTCG
59.327
45.833
5.18
0.00
0.00
3.95
276
287
4.376819
GCATGTTGCGTTAGATGCTAGATC
60.377
45.833
11.79
0.00
38.53
2.75
293
304
1.865788
ATCTTGTTGCGCCGCATGTT
61.866
50.000
14.63
0.00
38.76
2.71
317
368
5.122554
CCTAGTGTCGCATTAGACGATAGAT
59.877
44.000
9.73
0.00
43.70
1.98
324
375
2.194271
GCACCTAGTGTCGCATTAGAC
58.806
52.381
9.73
0.00
41.30
2.59
355
406
6.127535
ACGCTAGTTGGTTTTATAGTAGAGCA
60.128
38.462
0.00
0.00
0.00
4.26
357
408
7.431668
GTGACGCTAGTTGGTTTTATAGTAGAG
59.568
40.741
0.00
0.00
0.00
2.43
362
413
6.253727
CAGAGTGACGCTAGTTGGTTTTATAG
59.746
42.308
0.00
0.00
0.00
1.31
363
414
6.071784
TCAGAGTGACGCTAGTTGGTTTTATA
60.072
38.462
0.00
0.00
0.00
0.98
366
482
3.131396
CAGAGTGACGCTAGTTGGTTTT
58.869
45.455
0.00
0.00
0.00
2.43
392
508
1.264672
AAACAACTCGCAAACGCAAC
58.735
45.000
0.00
0.00
39.84
4.17
402
518
2.964768
GTGCTCGCTTTAAAACAACTCG
59.035
45.455
0.00
0.00
0.00
4.18
412
647
5.401376
GTGATCGTATATTGTGCTCGCTTTA
59.599
40.000
0.00
0.00
0.00
1.85
416
651
3.049912
TGTGATCGTATATTGTGCTCGC
58.950
45.455
0.00
0.00
0.00
5.03
424
659
8.516234
GTGGTCTATCTCTTGTGATCGTATATT
58.484
37.037
0.00
0.00
0.00
1.28
431
666
4.688021
GGTGTGGTCTATCTCTTGTGATC
58.312
47.826
0.00
0.00
0.00
2.92
466
701
2.937149
CTCGAGTGACGGAGAATAGTCA
59.063
50.000
3.62
0.00
44.11
3.41
485
720
3.055591
CACTCCGTGCATGATACATCTC
58.944
50.000
7.72
0.00
0.00
2.75
505
740
1.539388
CCGTTGCTTGATTTGTAGCCA
59.461
47.619
0.00
0.00
0.00
4.75
547
782
3.060895
CGATACAACTCAGAAAAGGCGAC
59.939
47.826
0.00
0.00
0.00
5.19
578
813
1.591594
CCATCGTACGCCATCGCTT
60.592
57.895
11.24
0.00
39.84
4.68
603
838
3.077359
GCCAGCCATATATTCAGACACC
58.923
50.000
0.00
0.00
0.00
4.16
634
869
8.737168
TTCTCACATTCTTTTCTCTCTCAAAA
57.263
30.769
0.00
0.00
0.00
2.44
635
870
8.206867
TCTTCTCACATTCTTTTCTCTCTCAAA
58.793
33.333
0.00
0.00
0.00
2.69
636
871
7.730084
TCTTCTCACATTCTTTTCTCTCTCAA
58.270
34.615
0.00
0.00
0.00
3.02
637
872
7.295322
TCTTCTCACATTCTTTTCTCTCTCA
57.705
36.000
0.00
0.00
0.00
3.27
638
873
9.868277
TTATCTTCTCACATTCTTTTCTCTCTC
57.132
33.333
0.00
0.00
0.00
3.20
639
874
9.874205
CTTATCTTCTCACATTCTTTTCTCTCT
57.126
33.333
0.00
0.00
0.00
3.10
666
902
9.090692
GTCAAATGTCAAAATCATAAATGAGGG
57.909
33.333
0.00
0.00
40.64
4.30
667
903
9.865321
AGTCAAATGTCAAAATCATAAATGAGG
57.135
29.630
0.00
0.00
40.64
3.86
737
973
1.236616
TGCAACGGAGCATCAAGGTG
61.237
55.000
0.00
0.00
40.11
4.00
738
974
0.537143
TTGCAACGGAGCATCAAGGT
60.537
50.000
4.86
0.00
45.19
3.50
740
976
1.469703
TGATTGCAACGGAGCATCAAG
59.530
47.619
0.00
0.00
45.19
3.02
854
1091
1.448013
GCACGGCAGAAGGGAGTAC
60.448
63.158
0.00
0.00
0.00
2.73
868
1107
1.523758
GGGGAGCTATAAATGGCACG
58.476
55.000
1.00
0.00
36.66
5.34
887
1126
2.058829
GAAGCGAGAGGAGAGAGCCG
62.059
65.000
0.00
0.00
0.00
5.52
931
1170
4.164221
GGAGAGAGAGAGAGGAGAGAGAAA
59.836
50.000
0.00
0.00
0.00
2.52
939
1183
1.488812
CGAAGGGAGAGAGAGAGAGGA
59.511
57.143
0.00
0.00
0.00
3.71
940
1184
1.488812
TCGAAGGGAGAGAGAGAGAGG
59.511
57.143
0.00
0.00
0.00
3.69
973
1217
2.286833
CGCGGTTCTAGAGAGAGAGAAG
59.713
54.545
0.00
0.00
32.43
2.85
974
1218
2.093606
TCGCGGTTCTAGAGAGAGAGAA
60.094
50.000
6.13
0.00
31.77
2.87
1204
1448
2.015587
GAAAAGGCAGATGAGGAGCAG
58.984
52.381
0.00
0.00
0.00
4.24
1323
1576
1.667154
CGATCCCGGAGCACTTCTCA
61.667
60.000
0.73
0.00
43.70
3.27
1788
2050
3.908189
TCGGCGGTGAAGTCGATA
58.092
55.556
7.21
0.00
43.75
2.92
2361
4654
1.137404
CTTGTACCCGACGTACCGG
59.863
63.158
8.64
8.64
45.89
5.28
2691
4992
3.652057
AGGAACTGAGAGAGGAGAGAG
57.348
52.381
0.00
0.00
37.18
3.20
2763
5096
5.177696
AGCGTCAAAACAGAGAGTAACAATC
59.822
40.000
0.00
0.00
0.00
2.67
2764
5097
5.057149
AGCGTCAAAACAGAGAGTAACAAT
58.943
37.500
0.00
0.00
0.00
2.71
2765
5098
4.439057
AGCGTCAAAACAGAGAGTAACAA
58.561
39.130
0.00
0.00
0.00
2.83
2766
5099
4.054780
AGCGTCAAAACAGAGAGTAACA
57.945
40.909
0.00
0.00
0.00
2.41
2767
5100
4.506654
TGAAGCGTCAAAACAGAGAGTAAC
59.493
41.667
0.00
0.00
0.00
2.50
2768
5101
4.689071
TGAAGCGTCAAAACAGAGAGTAA
58.311
39.130
0.00
0.00
0.00
2.24
2769
5102
4.316205
TGAAGCGTCAAAACAGAGAGTA
57.684
40.909
0.00
0.00
0.00
2.59
2770
5103
3.179443
TGAAGCGTCAAAACAGAGAGT
57.821
42.857
0.00
0.00
0.00
3.24
2771
5104
4.739046
AATGAAGCGTCAAAACAGAGAG
57.261
40.909
6.39
0.00
37.30
3.20
2772
5105
5.538118
TCTAATGAAGCGTCAAAACAGAGA
58.462
37.500
6.39
1.07
37.30
3.10
2773
5106
5.845985
TCTAATGAAGCGTCAAAACAGAG
57.154
39.130
6.39
0.00
37.30
3.35
2774
5107
6.204688
ACAATCTAATGAAGCGTCAAAACAGA
59.795
34.615
6.39
7.28
37.30
3.41
2775
5108
6.373779
ACAATCTAATGAAGCGTCAAAACAG
58.626
36.000
6.39
2.02
37.30
3.16
2776
5109
6.312399
ACAATCTAATGAAGCGTCAAAACA
57.688
33.333
6.39
0.00
37.30
2.83
2777
5110
8.015658
AGTAACAATCTAATGAAGCGTCAAAAC
58.984
33.333
6.39
0.00
37.30
2.43
2778
5111
8.094798
AGTAACAATCTAATGAAGCGTCAAAA
57.905
30.769
6.39
0.00
37.30
2.44
2779
5112
7.386573
TGAGTAACAATCTAATGAAGCGTCAAA
59.613
33.333
6.39
0.00
37.30
2.69
2780
5113
6.871492
TGAGTAACAATCTAATGAAGCGTCAA
59.129
34.615
6.39
0.00
37.30
3.18
2781
5114
6.394809
TGAGTAACAATCTAATGAAGCGTCA
58.605
36.000
4.40
4.40
38.41
4.35
2782
5115
6.887376
TGAGTAACAATCTAATGAAGCGTC
57.113
37.500
0.00
0.00
0.00
5.19
2783
5116
6.818644
ACATGAGTAACAATCTAATGAAGCGT
59.181
34.615
0.00
0.00
30.55
5.07
2784
5117
7.121911
CACATGAGTAACAATCTAATGAAGCG
58.878
38.462
0.00
0.00
30.55
4.68
2785
5118
7.978982
ACACATGAGTAACAATCTAATGAAGC
58.021
34.615
0.00
0.00
30.55
3.86
2786
5119
9.764870
CAACACATGAGTAACAATCTAATGAAG
57.235
33.333
0.00
0.00
30.55
3.02
2787
5120
8.729756
CCAACACATGAGTAACAATCTAATGAA
58.270
33.333
0.00
0.00
30.55
2.57
2788
5121
7.882791
ACCAACACATGAGTAACAATCTAATGA
59.117
33.333
0.00
0.00
30.55
2.57
2789
5122
7.964559
CACCAACACATGAGTAACAATCTAATG
59.035
37.037
0.00
0.00
31.85
1.90
2790
5123
7.882791
TCACCAACACATGAGTAACAATCTAAT
59.117
33.333
0.00
0.00
0.00
1.73
2791
5124
7.220740
TCACCAACACATGAGTAACAATCTAA
58.779
34.615
0.00
0.00
0.00
2.10
2792
5125
6.764379
TCACCAACACATGAGTAACAATCTA
58.236
36.000
0.00
0.00
0.00
1.98
2793
5126
5.620206
TCACCAACACATGAGTAACAATCT
58.380
37.500
0.00
0.00
0.00
2.40
2834
5167
6.936900
GGTATGTATGTATTCACATCAAGCCT
59.063
38.462
0.00
0.00
44.42
4.58
2895
5252
1.214062
CCTCCGCTCACTGTCTGTC
59.786
63.158
0.00
0.00
0.00
3.51
2896
5253
0.827925
TTCCTCCGCTCACTGTCTGT
60.828
55.000
0.00
0.00
0.00
3.41
2897
5254
0.108898
CTTCCTCCGCTCACTGTCTG
60.109
60.000
0.00
0.00
0.00
3.51
2898
5255
0.251386
TCTTCCTCCGCTCACTGTCT
60.251
55.000
0.00
0.00
0.00
3.41
2970
5332
4.577677
TGCCCTGCAAGCACGGAA
62.578
61.111
13.21
0.65
34.76
4.30
3013
5375
0.687354
GATCCTCCTGGTGTGTGTGT
59.313
55.000
0.00
0.00
34.23
3.72
3015
5377
0.473694
TGGATCCTCCTGGTGTGTGT
60.474
55.000
14.23
0.00
37.46
3.72
3199
5594
5.008712
GGCCCACTAATTATCAGTGCTTTAC
59.991
44.000
0.00
0.00
41.72
2.01
3231
5626
1.806542
CACTGCTGGTGGTGATACAAC
59.193
52.381
0.00
0.00
41.90
3.32
3233
5628
0.321564
GCACTGCTGGTGGTGATACA
60.322
55.000
11.18
0.00
45.44
2.29
3234
5629
2.471255
GCACTGCTGGTGGTGATAC
58.529
57.895
11.18
0.00
45.44
2.24
3257
5652
4.827087
CAGCCGCAGTCGCCATCT
62.827
66.667
0.00
0.00
33.11
2.90
3287
5688
2.990066
AAGAAGCCGGAGTAGGAATG
57.010
50.000
5.05
0.00
0.00
2.67
3328
5729
1.687123
ACAACTAGCCGTTCAGTCAGT
59.313
47.619
0.00
0.00
32.27
3.41
3329
5730
2.440539
ACAACTAGCCGTTCAGTCAG
57.559
50.000
0.00
0.00
32.27
3.51
3330
5731
2.159014
ACAACAACTAGCCGTTCAGTCA
60.159
45.455
0.00
0.00
32.27
3.41
3331
5732
2.480845
ACAACAACTAGCCGTTCAGTC
58.519
47.619
0.00
0.00
32.27
3.51
3508
5914
2.370281
ACGATCTGATCAAGCGTGTT
57.630
45.000
17.19
0.00
33.52
3.32
3521
5927
2.076863
GTGCAGCCAAAGTAACGATCT
58.923
47.619
0.00
0.00
0.00
2.75
3536
5942
1.225855
TTTTACTCACTGGCGTGCAG
58.774
50.000
0.00
0.00
40.99
4.41
3567
5973
5.047377
TCAAATCCAAGGCAAATCCAGTAAC
60.047
40.000
0.00
0.00
37.29
2.50
3596
6002
4.751431
AGGAACCATCTGCCTTGC
57.249
55.556
0.00
0.00
0.00
4.01
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.