>input_sequence_47028
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-------------------------------------------ATGGTGCAACAGCACAGAATCTACGTCGTGCAGTTCG
ACAAGGGGGAGCCTGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGCGGCCGCCGGATCATGTACTAC
TACCATGACTACGGCACCGGAGGCGCCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAGGGCGCTCAGCCTGAGCGGCTT
CTTCGGCCTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCTCCGGGCGCCTTCTTCTCCTTCGCGCGCA
CCGGCGGTGCGGCGGCGGCGGCGGC---------GGCCACGCAGCAGCAGCAGAGTGAGAAGTGCTCCGGGATCGGCAAC
GACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGACCTGCGCATGCACTCGGCGAG
CGCGTCGTTCCAGCTCGTGTCCTCCGCCGGGCGACCGGCGGTGGAGGAGGAGGAGAGGATACGGCCGTACACGCGCAAGT
GGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGCTTCCACCGCGTGTCCCCCGGCGA---------GGCCGCGCGC
TGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAACGTGTACCACGAGTTCAACGA
CGGCCTCCTCCCGATGTTCGTGACGGCGGGCCACCTCCAGCGCCGCGTGGTGTTCGTCATCCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCGACGTCGTGTCCCGGCTCTCGGCGTTCCCGCCTATCGACTTCACCGCCGATCGCCGCGTGCAC
TGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGCGAGCTCACCGTGGACCCCGCCAGGACCCCCGAGGGCCGGA-
--GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACCTGGAGCGCATGGAGCGCAAGG
CCGCCCGCAAGCAACGCCGCGCCAGCGGCGCCGCCGCCGGCA-------------------------------AGCTCGC
GCTCCCGAGCAAGCACCCGGCGGCTCCGGCGGAGAGGCCGAAGCTGGTGATCGTGTCGAGGACGGGGTCCCGCGTGATCG
AGAACGAGGAGGAGCTGAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTCCGGCCGGAGCGGAGCACGGAG
ATGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTT
CATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAA--------------------
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---------------------------------------------------------CGAGTACTACGGCGAGCCGGCGG
CGCGCCTCGGCCTCCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCCCTGGCCCGCGAGTACCCGGCCGGCCAC
CCCGTGCTGACGGACCCCGCCGGCGTAGCGCAGCGCGGCTGGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAACGT
GCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCGGC
CGAAAACCAAACCTATTGCGATGT----GA--------------------------------------------------
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>chr2D_1_TraesCS2D01G134700
TTCTTGAGTTATACCGGCGTTGAATAAAGATGTCTGGTCAACTAGCACCATACATAAGCCACGCATCTA------TATTT
TTTTGAAGACCACCAGCCTCATAAAAGTAAAGCGTCCGGGATATAAAGGCTTCACACAAATTGTCTATGTATACTTCTGT
CTTCTTTGTAGGTGTTTGTTTTGAGGGTGGTGGCGCACACTAGAAGGACACAAGACGCACATTTGGTCATTCTTAATTTT
T--CTAAAGAATAGCAAAAAAAGA--ACATTTATACAACGAACACAGATCTAGCATCTAACGCAACATG-----------
-----------------------------CGGCGCAACAAGATATGGATCTATCGTCTAATGCGACACTAGGTGCAACAA
GATATTGCTCTACT-----------------------------------------------------------------A
TAAAACCAACTAGCGTCACTCTGAAGTGTTGCGTTTGC------------------------------------------
-----------------------------------------------------------------------------GAG
TTGTTTTAAAGCGAGCACAATATACGATCACAAGAGATAGACCACACCGCTTTATCTAAATGACTATTCTCCGTCACTCG
AGATGTATCATGCACGGAGTGGCTACAAATCAAGCAACGGGACGCGGGAAAAGCGAGAAGAGTCGCCTTTTCTGAGTTGT
ATCGGTGTCGAAAAGCGATGGCGTACGATGGAAGTGTGGTGTCTGAATATATGGCTGGCTTTAATTTTTTTTGAGAGAGA
AAA-GAATGTGAGAAGATAAGCCCTCATTTATGATTTTGACATTTGACTAATGAATCGCAGTTACCCAACAAAAGCTTTG
CGCCGATATCCCCACCTTGATGCTCCGTTGCAATCAAAGGACCC-ACAATTTTTCTTCAAGGATGTTCCATGGGTGTTGT
GGCCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTG--TACTCCCTTCTGCCGTGCCATTTATAG
CTCCCCGGCTCTCTCCTCTCGCTTCGTCACAATCCAAAACCCCGAGAACTTT-----CTCTCTCCTCTCTCTCTCTCCCT
TCGACTCTCTCTCTCTCTTCTCTCTCTCTAGAACCGCGAGAACATGGTGCAACAGCACAGAATCTACGTCGTGCAGTTCG
ACAAGGGGGAGCCTGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGCGGCCGCCGGATCATGTACTAC
TACCATGACTACGGCACCGGAGGCGCCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAGGGCGCTCAGCCTGAGCGGCTT
CTTCGGCCTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCTCCGGGCGCCTTCTTCTCCTTCGCGCGCA
CCGGCGGTGCGGCGGCGGCGGCGGC---------GGCCACGCAGCAGCAGCAGAGTGAGAAGTGCTCCGGGATCGGCAAC
GACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGACCTGCGCATGCACTCGGCGAG
CGCGTCGTTCCAGCTCGTGTCCTCCGCCGGGCGACCGGCGGTGGAGGAGGAGGAGAGGATACGGCCGTACACGCGCAAGT
GGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGCTTCCACCGCGTGTCCCCCGGCGA---------GGCCGCGCGC
TGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAACGTGTACCACGAGTTCAACGA
CGGCCTCCTCCCGATGTTCGTGACGGCGGGCCACCTCCAGCGCCGCGTGGTGTTCGTCATCCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCGACGTCGTGTCCCGGCTCTCGGCGTTCCCGCCTATCGACTTCACCGCCGATCGCCGCGTGCAC
TGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGCGAGCTCACCGTGGACCCCGCCAGGACCCCCGAGGGCCGGA-
--GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACCTGGAGCGCATGGAGCGCAAGG
CCGCCCGCAAGCAACGCCGCGCCAGCGGCGCCGCCGCCGGCA-------------------------------AGCTCGC
GCTCCCGAGCAAGCACCCGGCGGCTCCGGCGGAGAGGCCGAAGCTGGTGATCGTGTCGAGGACGGGGTCCCGCGTGATCG
AGAACGAGGAGGAGCTGAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTCCGGCCGGAGCGGAGCACGGAG
ATGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTT
CATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAA--------------------
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---------------------------------------------------------CGAGTACTACGGCGAGCCGGCGG
CGCGCCTCGGCCTCCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCCCTGGCCCGCGAGTACCCGGCCGGCCAC
CCCGTGCTGACGGACCCCGCCGGCGTAGCGCAGCGCGGCTGGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAACGT
GCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCGGC
CGAAAACCAAACCTATTGCGATGT----GATCGGTCCATATAATCGTCTCCGTTAGCAAACA----TCCCGTATAGCAGT
ATACCATAGATCAAAATTTACAGACACCTTTCTCTCTCCTCTCTCAGTTCCTGTCAGTTACAGTTACAGCAGCTAACTTC
ATACCTGACCATTCATTTCATT--------------------------------AGATTGTTACTCTCTGTTTTGACGCT
TCATTAGATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCA-----GGCT-------TGATGTGAATACATACA
TA------------CCCAATAAAGAAGGATTCAGTTACAATTTTGCGTCCTGACAGACAGTGAG-----CGGAGGAAGAT
TCCTGCGTGCGAGTGGCAGAGCGCCAGAGGCAGAGCACCGGCCGGTTGGTGTTCCGTGCTTGCAGGGCACGAACTGTGAA
CCGCCTCTGCTGTTACA---------CACACACCAGGAGGATCCATCTGAAACGCATGCAGAGGGCAG-----------G
GTTAGGCAGGGAGATGTTCCGTGCTTCCTACCCCGGATTCCAATCCAAC--------ATGCCGATCAATCGATCATCGAT
CGTC----GATGTGGTGTGGTTGT-TTTGGATGGGTTGGTTGGAACATACTAGTCAGCTTTCGTTAAGCGTCAGTAAAGC
ACTGATAATTAGTGGGCCGATAAAGGTTGTATCACCACCAGCAGTGCTCGGAGATGGCGACTGCGGCTGC------AGGT
GCGTGTACATTCCTACTCCGGCTTCTTTTTCTACTGCTGCCACTGAAGACTGACT--GAACGGCTAGTTGTTGTTGTGGA
GAGCAGAGTCACCGGTCAATTGTTTCAGTGGGAAGCTATTTTACTTACTTGCGCAGGCCAGTCACTGCCTCACCTAGAGG
CACTTAAAAAAGAAGAGATCCATTCGTA---GGAGTGTCTTGCTTGGCGCTCTGGGTAAGTCTAGAACCGATGAACACGC
TTGATCAGATCGTTACTTTGGCTGCACGCCAGTGAGTAAAAACAGTACTGTAGTTACTGGATTTGCCTTGGATTTGAAGA
AGCAAGGCAGATGGTTCCT
>chr2B_1
TTCCTGGGTTATATCGGTGTTGAATAAAGATGCTTGGTCAACTAGCACCATATATAAGCCATGTATGTG------TGTTT
TTCCGAAGGCCTCCAGTGTCATAAAAGTAAATCATCCGACATATGAGGGATTCACATAAATTGTCTATGTATACTTCTGC
CTTCTTTGTAGGTGTTTGTTTTGAGGGTGGTGGCGCACACTAGAAGGACACAAGATGCATATTTGGT-ATTCTTAAATTT
A--CTAAAGAATAGCAAAAAATAA--ACATTTGTACAATGAACACAAACCTAGCATCTAACGCGACATG-----------
-----------------------------CGGTGCAACAAGATATGGGTCTATCAACTAATGCGACACTCGGCGCAACAA
GATATGAGTCTATCATCTAATGCGACATCTGGGCGCAATGTGACTTTAGGCGCAACAAGATAT---------ATCTAGCA
TCGAACAAACTAGCGTCACTCTGAAGTCTTGCGCTTGTGAGTTGTTTCAAACCGAGGAGGATATACAAGAGATACCGATC
TAATGCGACACTTGAGCACAACAAGATATGGACCGACCATCCAGACAACTATCGTCGCTATGATATCCTGCATTTGTGAG
TTGTTTCAAATCGAGCACGATATACCATCACAAGAGATAGACCACACCGCTTTATCTGAACAACTATTCTCTGTCAGTCT
AGATGTATCATGCACGGAGCGGCTACAAATCAAGCGATCTGACGCGGGAAAAGCGAGAAGACTCGCCTTTTCTGAGTTGT
ATCGGTGTCGAATAGCGATAGCGTACGATAGAAGCGTCGTGTCTGAATGTATGAATGGCTTTAATTTT------GAGAGA
AAA-GAATGTGAGAAGATAAGTGCTCATTTATGATTTTGACATTTGACTAATGAATCCCAGTTACCCAACAAAAGCTTTA
CGCCGATATCCCGTCATTGATGCTCCGTTGCAATCAAAGGACCC-ACAATTTT-CTTCAAGGATGTTCCATGGGTGCTGT
GGTCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTC--TACTCCCTTCTGCAGTGCCATTTATAG
CTCCCGGGTTCTCTCCTCTCGCTTCGTCAG--TCCAAAACCCCGAGAACCTTTCTCTCTCCTCTCTCTCTCTCTCTCCCG
TCGACTCTCTCCCC--TCTCTCTCTCTCTAGAACCGCAGGAACATGGTGCAACAGCACAGAATCTACGTCGTGCAGTTCG
ACAAGGGGGAGCCTGATCATGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGCGGCCGCCGGATCATGTACTAC
TACCATGACTACGGCACCGGAGGCGCCGCCGGCAAGAACGGCAAGCCGGCCAAGGGCAGGGCGCTCAGCCTGAGCGGCTT
CTTCGGCTTGCTCCTCATCTGCCTTTTCGGCCTGGCCACGCTCCTCGCGGCTCCGGGCGCCTTCTTCTCCTTCGCGCGCA
CCGGCGGC---------GCGGCGGC---------GGCCACGCAGCAGCAGCAGAGCGAGCGGTGCTCCGGGATCGGCAAC
GACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGATATGTGCTTCGCGCGCGGCGACCTGCGCATGCACTCGGCGAG
CGCGTCGTTCCAGCTCGTGTCCTCCGCCGGGCGACCGGCGGTGGAGGAGGAGGAGCGGATACGGCCGTACACGCGCAAGT
GGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGCTTCCACCGCGTGTCCGCCGGCGA---------CGCCGCGCGC
TGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAACGTGTACCACGAGTTCAACGA
CGGCCTCCTCCCGATGTTCGTGACGGCGGGCCACCTCCAGCGCCGCGTGGTGTTCGTCATCGTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCGACGTCGTGTCCCGGCTGTCGGCGTTCCCGCCCATCGACTTCACCGCCGATCGCCGCGTGCAC
TGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGCGAGCTCACCGTGGACCCCGCCAAGACCCCCGAGGGCCGGA-
--GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACCTGGAGCGCATGGAGCGCAAGG
CCGCCCGCAAGCAACGCCGCGCCAGCGGCGCCGCCGCCACGA-------------------------------AGCTCGC
CCTCCCGAACAAGCACCTGGCGGCGCCGGCGGAGAGGCCGAAGCTGGTGATCGTGTCGAGGACGGGGTCCCGCGTGATCG
AGAACGAGGAGGAGCTGAAGGCGCTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTCCGGCCGGAGCGGAGCACGGAG
ATGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTGTT
CATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCAAA--------------------
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---------------------------------------------------------CGAGTACTACGGCGAGCCGGCGG
CGCGCCTCGGCCTGCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCCCTGGCCCGCGAGTACCCCGCGGGCCAC
CCCGTGCTGACGGACCCCGCCGGCGTGGCGCAGCGCGGCTGGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAACGT
GCGGCTCGACCTGGCGCGGTTCCGGGAAGAGCTGGTCGCGGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCGGC
CGAAAAGCAGAGCTCTTGCGATGT----GATCGGCCGATATAATCGTCTCCGTTAACAAACA----TCCCGTATAGCAGT
ATACCATAGATCAAAATTTACAGACACCTTTTCTCCTCTTCTCTCAGTTCCTGTCAGTTACAGTTACAGCAGCTAACTTC
ATACCTGACCATTCATTTCATT--------------------------------A-------------------------
------GATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCGATGCTGGTTTACATGCTGATGTGAATATATG--
--------------CCCAATAAAGAAGGATTCAGTTACAATTTTGCGTCGT----GACAGTGAG-----CGGAGGAAGAT
TCCTGCGTGCAAGTAGCAGGGCGCCAGAGGCAGAGCACCGGCCGGTTGGTG----GTGCTTGCAGGGCACGAACTGTAAA
CCGCCTGCTGTT-----------------ACACCACGAGGATCCATCTGAAACGTATGCAGAGGCAGCCAGGGAGGTCAG
GTTAGGCAGGGAGATGTTCCGTGTTTCCTACCCCAGATTCCAATCCAATCCCAGCGTATGCCGATCAATCGATCGTTGAT
CGTC----GATGTGGTGTGGTTGTTC-TGGATGGGTTGGTTGGAACATACTAGTCGGCTTTCGTTAAGCGTCAATAAAGC
ACTGATAATTAGTGGACCGATAAAGCTA-TATCACCACCAGCAGTGCTCAGGGATGGCGACTGCGGCTGC------AGGT
GCGTGTATATTCCTACTCCGGCTTCCTTTTCTACTGCTGCCACTGAAG----ACT--GAACGGCTAGTTGTTGTTGTGGA
GAGCAGAGTCACCGGTCAATTGTTTCAGTGGGAAGCTATTTTACTTACTTGCGCAGGCCAGTCACTGCCTTACCAAGAAG
CACTTAAAAAA--AGAGATCCATTCGTA---GGAGTGTCTTGCTTGGCGCTCTGGGTGAGTCTAGAACCGATACACACG-
TTAATTTGATCGTTACTTCGGTTGCACGCCAGTGAGTAAAAACAGTACTGTACTTACTGGATTTGCCTTGGATTTGAAGA
ACCAAGGCAGATGGTTCCT
>chr2B_1
TTCCTGAGTTATATCGGTGTTGAATAAAGATGCCTGGTCAACTAGCACCACATATAAGCCACGTATGTG------TGTTT
TTCCGAAGGCCTCCAGTGTCATAAAAGTAAATCATCCGACATATAAGGGATTCACATAAATTGTCTATGTATACTCCTGC
CTTCTTTGTAGGTGTTTGTTTTGAGGGTGGTGGCGCACACTAGAAGGACACAAGATGCGTATTTGGT-ATTCTTAAATTT
T--CTAGAGAATAGCAAAAAATAA--ACATTTGTACAATGAACACAAACCTAGCATCTAACGCGACATG-----------
-----------------------------CGGCGCAACAAGATATGGGTCTATCAACTAATGCGACACTCGGCGCAACAA
GATATGGGTCTATCATCTAATGCGACATCTGGGCGCAATGTGACTTTAGGCGCAACAAGATAT---------ATCTAGCA
TCGAACGAACTAGCGTCACTCTGAAGTCTTGCGTTTGTGAGTTGTTTCAAACCGAGCATGATATACAAGAGATATCGATC
TAATGCTACACTTGAGCGCAACAAGATATGGATCGACCATCCAGACAACTATCGTCGCTATGATATCTTGCATTTGTGAG
TTGTTTCAAATCGAGCACGATATGCCATCACAAGAGATAGACCTCACCGCTTTATCTGAACGACTATTCTCCATCACTCT
AGATGTATCATGCACGGAGCGGCTACAAATCAAGCGATCTGACGCAGGAAAAGCGAGAAGACTCGCCTTTTCTGAGTTGT
ATCGGTGTCGAATAGCGATAGCGTACGACAGAAGTGTTGTGTCTAAATATATGGCTGGCTTTAATTTT------GAGAGA
AAA-GAATGTGAGAAGATAAGTGCTCATTTATGATCTTGACATTTGACTAATGAATCCCAGTTACCCAACAAAAGCTTTG
CGCCGATATCCCGCCATTGATGCTCTGTTTCAATCAAAGGACCC-ACAATTTT-CTTCAAGGATGTTCCATGGGTGCTGT
GGTCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTCTATACTCCCTTCTGCAGTGCTATTTATAG
CGCCCGGGCTCTCTCCTCTCGCTTCGGCACAATCCAAAACCCCGAGAACCTT---CTCTCTCCTCTCTCTCTGTCTCCCT
TCGACTCT------------------------------------------------------------------------
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>chr2A_6
-----GAGTTATATCGGTATTGAATAAAGATGTCTGGTCAACTAGCACCATATATATAAAAATTGTCTATGTATCTATTT
TTCGAAAGGCCACCAGTCTCATAAAAGTAAAGCATCCGAGATATAAGGGCTTCAAATAAATTGTCTATGTATACTTCTGC
CTTCTCTATAGGTGTTTATTTTGAGGGTGGTGGCGCATACGAGAAGGACACAAGATGCATATTTGGTTATTCTTACTTTT
TTTCTAGGGAATGGTAAAAAATGTATACATTTATACAATGAACACAAATATAGCATCTAACGCGACATCCGGTGCAACAA
GATATTCATCTATCAACTAATGTGACAATCGGCGCAACAAAATATGGGTCTATCATCTAATGTGACACTAGGCGCAACAA
GATATGGATCTATCATCTAAC------------------GTGACTTTAGGCGCAACAAGATATGTATGACGTATCTATCA
TCAAACCAACTAGCGTCACTCTGAAGTCTTGCATTTGTGAATTGTCTCCAACCAAGCACATTATACAACAAATACTGATC
TAATGCAGCCCTTTAGCGCAACTAGATATGGATCAACCATACAAACAACCATCGTCGCTATGCTGTCTTGCATTTGTGAG
TTGTTTCAAATCGTGCATGATATACCATCACAAGAGATAGACCTAACCGCTTTATCTAAACGACTATTCTCCGTCACTCT
AGATGTATCACGCATGTAGCGGCTACAAATCAAGCAATGTGGCACGGGAAAAGCGAGAAGACTCGCCTTTTCTGAGTTGT
ACCGGTGTCGAATAGTGACGGCGTACGATGGAAGCGTTGTGTCTGAATACATGGCTGGCTTTAATTTT------GAGAGA
AAAGGAACGTGAGAAGGTAAGTGCCCATTTATGATTTTGACATTTGACTAATGAATCGCAGTTACCCAACAAAAGCTTTG
CGCCGATATCCCGCCATTGATGCTCCGTTGCAATGAGAGGACCCCACAATTTT-CTTCAGGGATGTTCCATGGGTGCTGT
GGCCGGGTTGCCATAGCATGGCTCCTCAACCTCTAACCGCCGCTAATTTTC--TACTCCCTTCTGCAGTGCCATTTATAG
CTCCCGGGCTCTCTCCTCTCGCTTCGTCACAATCCAAAACCCCGAGAACCTT---CTCTCTCCTCTCTCACAACT-----
----CTCTCTCTCTCTTCTCTCTCTCTCTAGAACCGCGAGAACATGGTGCAACAGCACAGAATCTACGTCGTGCAGTTCG
ACAAGGGGGAGCCGGACCAGGAGGAGCTGTCATGCAAGGCCTCGCCGCCCAAGGGCGGCGGCCGCCGGATCATGTACTAC
TACCATGACTACGGCACCGGAGGCGGCGCCGGCAAGAACGGCAAGCCGGCCAAGTCCAGGGCGCTCAGCCTGAGCGGCTT
CTTCGGCTTGCTCCTCATCTGCCTTTTCGGCCTCGCCACGCTCCTCGCGGCCCCGGGCGCCTTCTTCTCCTTCGCGCGCA
CCGGCGGC---------GCGGCGGCGACGGCGGCGGCCACGCAGCAGCGGCAGAGCGAGCGGTGCTCCGGGATCGGCAAC
GACACCCTGTGCTGCGACCGCTCGTCGAGGCGCGCGGACATGTGCTTCGCGCGCGGCGACCTGCGCATGCACTCGGCGAG
CGCGTCGTTCCAGCTCGTGTCCTCCGCTGGGCGACCGGC------GGAGGAGGAGAGGATACGGCCGTACACGCGCAAGT
GGGAGGCGCACGTGATGAAGACCATCGACGAGGTGCGGTTCCGGCGCGTGCCCCCCGGCGA---------GGCGGCGCGC
TGCGACGTGCGGCACGACATGCCGGCCGTGCTGCTCTCCACGGGCGGGTTCACGGGCAACGTGTACCACGAGTTCAACGA
CGGCCTCCTCCCGATGTTCGTGACTGCGGGCCACCTCCAGCGCCGCGTGGTGTTGGTCATCCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCGACGTCGTGTCCCGCCTCTCGGCGTTCCCGCCCATCGACTTCACCGCCGACCGCCGCGTGCAC
TGCTTCCCCGAGGTGATCGCCGGCCTCCGCATCCACGGTGAGCTCACCGTGGACCCGGCCAGGACCCCCGAGGGCCGGA-
--GCATCCGCGACTTCCGGCGCCTCCTCGACGACGCCTACCGCCCCCGCATCAACTACCTGGAGCGCATGGAGCGCAAGG
CCGCCCGCAAGCAGCGCCGCGCCAGC------------------------------------------------------
----------AAGCACCCGGCGGCTCCGGCGGAGAGGCCGAAGCTGGTGATCGTGTCTCGGACGGGGTCCCGCGTGATCG
AGAACGAGGAGGAGCTCAAGGCGGTGGCCGCGGACGTGGGGTTCGACGTGCGCGTGGTGCGGCCGGAGCGGAGCACGGAG
ATGTGCAAGATATACCGCGACCTGAACGCGAGCGACGCGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTT
CATGCGCCCCGGCAAGGTGTTCATCCAGGTGGTGCCGCTGGGCACGGACTGGGCGGCGAA--------------------
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---------------------------------------------------------CGAGTACTACGGCGAGCCGGCGG
CGCGGCTCGGCCTGCGGTACGTCGGGTACAAGATCCTGCCGGAGGAGAGCTCGCTCGCCCGCGAGTACCCGGCCGGCCAC
CCCGTGCTGACGGACCCCGCCGGCGTGGCGCAGCGAGGCTGGGACGTGACCAAGAAGGTATACCTGGACCGGCAGAACGT
GCGGCTCGACCTGGCGCGGTTCCGGGAGGAGCTGGTCGCCGCCCACCGGTACCTCGTCGCCGGCAAGCGGAAGGGCCGGC
CGAAAACCAAACCTCTTGCCATATGATCGATCGGCCGATATAATCATCTCCGTTAGCAAACAAACATCCCGTATAGCAGT
ACACCATAGATCAAAATTTACAGACACC-TTTCTCCTCTCCTCTCTGTTCTTGTCAGTTACAGTTACAGCGGCTAACTCC
ATACCTGACCATTCATTTCATTTAGATTGTTACTCTCCGTTTTGACGCTTCATTA-------------------------
------GATTGTTACTCATGTGTTGGTGATGTGCCCGTGATCGATCGATGCCGGCT-------TGATGTGAATACATACA
TACATACATACATACCCAATAAAGAGGGATTCAGTTACAATTTAGCGTCCT----GACAGACAGTGATCCGGAACAAGAT
TCCTGCGTGCTGGTGGCAGAGCGGCAGAGGCAGAGCACCGGCCGGTTGGTG----GTGCTTGCAGGGCACGAACTGTGAA
CCGCCTCTGCTGTTGCGCACACACAGCACACAGCAGGAGGATCCATCTGAAACGCATGCAGAGGGCAGG-----------
---------------GTTCCGTGCTTCCTACCCCGGATTCCAATCCAATCCAA---TATGCCGATCAATCGACCATCGAT
CGTCCATGGATGTGGTGTGGTTGTGTTTGGATGGGTTGGTTGGAACATACTGGTCGGCTTTCGTTAAGCGTCAATAAAGC
GCTGATAATTAGTGGGCCGATAAAGTTATTATCACCACCAGCAGTGCTCGGGGATGGCGACTGCGGCTGCATCCAGAGGT
GCGTGTGTATTCCTACTCCGGCTTCTTTTTCTACTGCTGCCACTGAGGTGAAGGATGGAACGGCTAGTTATTGTTGTGGA
AAGCAGAGTCATGGGTCAATTGTTTGAGTGGGAAGCTATTTTACTTGCTTGCGCAGGCCAGTCACTGCCTTGCCTAGAAG
CACTTCAAAAAGAAGAGATCCGTTCGTACTGGGAGTGTCTTGCTTGGCGCTCTGGGTAAGTCTAGAACCGATGCACACGC
TTGATC--------------------------------------------------------------------------
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>chr1B_1496
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-------------------------------------------------------------------TACACCCGCAAGT
GGGAGTCCAGCGTCATGAGCACCATCGACGAGCTGCGCCTCCGAGCCCTGCCCGACCCCGA------GGGCGCTGCACGC
TGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAACGTGTACCACGAGTTCAACGA
CGGCATCATCCCGCTCTACATCACCGCCCGGCGGTACAACAGGAAGGTGGTGTTCGTGATGCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCCACATCGTCGAGCAGCTCTCCGACTTCCCGCCCGTCGACTTCTCCAACGACACCCGCACGCAC
TGCTTCCCGGAGGCCGTCGTCGGCCTGCGCATCCACGACGAGCTCGCCATCGACGCGTCACGGATGCCGGGAAACCAGG-
--GCATCCGGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCCATCATCGAGGAGGAG-------
------------AACGCCGCGCCACAAGCGGCGCCGGCGGCGGCGGCACTAGCAAAGAAACACGTCACGGAGGCGCTCGC
GGACGAC------------------------GACAAGCCGCGGCTGGTGATCGTGTCGCGCAACGGGTCGCGCGCGATCG
AGAACGAGCCGGAGCTGGCGCGCGCGGCGGGGAGGGCCGGGTTCCGGGTGACGGTGCTCCGGCCGCGCCCGGACACGGAG
CTCGCGCAGATGTACCGCGTCCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGTGCCGCCATGACGCACTTCCTCTT
CATGCGCCCGGGGTCGGTCTTCATCCAGGTGGTGCCGCTGGGAACCGACTGGGCCGCCGAGA------------------
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-----------------------------------------------------------ACTACTACGGCGAGCCGGCGC
GGCGGCTCGGCCTGCGCTACGTCCCCTACAAGATCCTGCCGTCGGAGAGCTCGCTGTTCCGGCGCTACGCCAGGGACGAC
CCCGTGCTCACCGACCCCGTCGCCGTTAACGCCAAGGGATGGCAGGTCACCAAGAAGGTGTACCTCGACGGGCAGAACGT
GCGGCTGGACATGGCGCGGTTCCGGCGACGGCTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>chr1D_1496
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TACACCCGCAAGT
GGGAGTCCAGCGTCATGAGCACCATCGACGAGCTGCGCCTCCGGGCCGTGCCCGTCCCCGACCCCGAGGGCGCTGCACGC
TGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAACGTGTACCACGAGTTCAACGA
CGGCATCATCCCGCTCTACATCACCGCGCGCCGGTACAACAGGAAGGTGGTGTTCGTCATGCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCCACATCGTCGAGCAGCTCTCCGACTTCCCGCCGGTCGACTTCTCCAACGACACGCGCACGCAC
TGCTTCCCGGAGGCCGTCGTCGGCCTGCGCATCCACGACGAGCTCGCCATCGACGCGTCGCGGATGCCGGGAAGCCAGG-
--GCATCCGGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCGATCATCGAGGAGGAG-------
------------AACGCCGCGCCACAAGCAGCGCCGGCGGCGGCGGCACTAGCGAAGAAACGCATCACGGAGCAGCTCGC
GGTCGAC------------------------GACAGGCCGCGGCTGGTGATCGTGTCCCGGAACGGGTCGCGCGCGATCG
AGAACGAGTTGGAGCTGGCGCGTGCGGCGGCGAGGGCCGGGTTCCGGGTGACCGTGCTCCGGCCGCGCCCGGACACGGAG
CTCGCGCAGATGTACCGCGTGCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGCGCGGCCATGACGCACTTCCTCTT
CATGCGCCCGGGGTCCGCCTTCATCCAGGTGGTGCCGCTCGGGACTGACTGGGCCGCCGAGA------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------ACTACTACGGCGAGCCGGCGC
GGCGGCTCGGCCTGCACTACATCCCCTACAAGATCCTGCCGTCCGAGAGCTCGCTGTTCCGGCGATACGCCAGGGACGAC
CCCGTGCTCACCGACCCGGTCGCCGTCAACGCCAAGGGATGGCAGGTCACCAAGAAGGTGTACCTCGACGGGCAGAACGT
GCGGCTCGACATGGCGCGGTTCCGGCGACGGCTG----------------------------------------------
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-------------------
>chr1A_1571
GCCAGC--------------------------------------------------------------------------
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----------------------------------------------------------------------------GCGC
TGCGACGTCCGGCACGACGTCCCCGCCGTCGTCTTCTCCACCGGCGGCTACACCGGCAACGTGTACCACGAGTTCAACGA
CGGCATCATCCCGCTCTACATCACCGCCCGGCGGTACAACAGGAAGGTGGTGTTCGTGATGCTCGAGTACCACGACTGGT
GGATGACCAAGTACGGCCACATCGTGGAGCAGCTCTCCGACTTCCCGCCCCTCGACTTCTCCAACGACACCCGCACGCAC
TGCTTCCCGGAGGCCGTCGTCGGCCTACGCATCCACGACGAGCTCGCCATCGACGCGTCGCGGATGCCGGGAAACCAGGC
CGGCATCCAGGACTTCCGGCACATGCTCGACGACGCGCACCGCGGCCGCATCAACGCCATCATCGAGGAGGAG-------
------------AACGCCGCGCCACAAGCCTCCCCGGCGGCGGCGGCACTAGCGAAGAAACTCGTCACGGAGCAGCTCGC
GGACGAC------------------------GACAAGCCGCGGCTGGTGATCGTGTCCCGGAACGGGTCGCGCGCGATCG
AGAACGAGCCGGAGCTGGCGCGGGAGGCGGCGAGGGCGGGGTTCCGGGTGACAGTGCTCCGGCCTCGCCCGGACACGGAG
CTCGCGCAGATGTACCGCGTCCTGAACGGCTCGGACGTGATGGTGGGCGTGCACGGCGCCGCCATGACGCACTTCCTCTT
CATGCGCCCGGGGTCGGCCTTCATCCAGGTGGTGCCGCTCGGCACCGACTGGGCCGCCGAGA------------------
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-----------------------------------------------------------ATTACTACGGCGAGCCGGCGC
GGCGGCTCGGCCTGCACTACATCCCCTACAAGATCCTGCCGTCGGAGAGCTCGCTGTTCCGGCGCTACGCCAGGGACGAC
CCCGTGCTCACCGACCCCGTCGCCGTCAACGCCAAGGGGTGGCAGGTCACCAAGAGGGTGTACCTCGACGGGCAGAACGT
GCGGCTCGACATGGCGCGGTTCCGG-------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1A_2218
--------------------------------------------------------------------------------
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--------------------------------CGACGCCATGGTGGGGGTGGACGGCGCTGCCATGATGCGCTTCCTCTT
CATGCACCCGAGGAAGGTGTTCATCCAGGTGGTGCCGATCGGCACGGATTGGGCCGCCGGCGACTACTACGGCGAGCACG
CGGCGCGGCTGGGCCTTCGATACGTCGGCTACATGATCCTCCTGGAGGAGAGCACGCTCTCCGCTAGTACCTCACCGGCG
ACCCCGTGCTGATGGACCCCGCTGCCACCGTGCAACGCGGATAAGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAAC
GTTCGACTGGACCTGGCCCGATTCAGGACAGGGAGGAGCTCCTGAGGGCTCACCAGTACCTGGCTGCCGGGCCGCGGCGG
CCAAGAGCAACCGTGTGATGTGATCAGACAGTTTGACCGGTTTGATTAACCAACAAATAGATCATTAATGAACATCACCT
GCTATAGTTTTTTTTCTTTCTTTCCATTGGGTATACTGACTTGACAATTCTTTGCATTAGTTTACTTTAGTTGGTGTCGT
CCTGTGCCTGTGATCGGTGGTAAATTTACAGTCTGAGCTTGCTATGCGTACATACTCAATAAAAAGATTCAATTACAGTG
GATGCACAATGCAGGCGCAAACAAAAAGATTGATTTTTTTAACTATGTACATTGGAAGTAGTGGTTGGTGTGCTCTGAAC
TCTGAAGAGGTAAATATACCAATGGTGTTTGAACTTGTCATGAATGTTCACTTTACTGTCTGAAGTTGAAAAAGTGCCAA
ATTGATTCTAAAACTTGGTTGGCACATGTAAATACGGAGCTAATCTTATTTGTAGACATATAGTGTGCTGAAGTGGCCCC
GTATATGCTGCCATTTGTAGTGGTGAAACATTATTACGCCAATGCTATATATTTGTCGAGCCTACAAGCTGCAGCTTGAT
AGAGGATACGCTTACCAATAGACCAAACACACTACTATGAGAAATTAATCCACTATAAGTTTAATCAATAGTAAATAGCA
AGCCTTGTTTTGCTTAAATGGGCTGCAATCCATGGCCCATTTAGCACACCGTAACGTTTTTAAAGAAATGTAAAAGGTTT
GTAAATTCTAATCATAATAATAAATTTTATATTCAAATATTCGTGTGTTGTTAATAATTACCCCGTGTATGGTTTGTATT
CACAAACATTTAAAATTGTATTTAATGAACATTCATAAATAATCCATGATTGTATATTTTAGAAGTTTGTATTTACGAAA
CATTTTTAGACACTCATGGCTTATATTTAACTAGTATTTTCAAAATAATAGGTGAATATTTCTAAAAATTACAGGAACAT
TTTTTAGTAAGTTATTTTATTACATACCTCTATATATTTATTGTGTGTGCACACAAATATTTGTGTACCATGAGGTTATT
ATTTATGTACCACAAATATTTATAACCCACAACATGGCATGGTGCCTGTTTTTTTTAAATACATGCACAGGAATATTTTT
ATACCACGAGGTAATCATTAATAACACACAGATATTTGTATATCATGAGGTAATTATTAGGAACACACAAATATTTGAAT
CTAACTTTTATTATTATGACTAGCACATATGTCCGTGCATTGCAACCGGACAGATAATATGAAAAAAGGAACGTTTTTTG
AAATTTACAACTTTTTTAGATGAGAGGATGAGCGCCTTTGTCACCGAGCTGCAATCCGTCTCGATGACTAAGGGTAGATC
CGTCCCCGACATTGCCTTCCGTAGTCCTTCTAGGCAAGCCATGGCTTCAGCGCAGTCAACTCCATTGCACCGCGGTGTAT
AATCCCAAGCTGATAAGATAATTCTTTCAAACAAGAATGTTATTTTAAATTTGTGAACATTTTAGTAAAACAAGAATATT
TTTCAAATTTTGATTTTTTAATGTAATTGTTCTTTGAAAATTTGAAAAAAAACTATAATTTTTTGAATTTTAAAAAACTT
TTGGAGCAAGAAAAATAAAATTCCAACAAAATTCAAAAAAGTATTTATTTTAAATTTACCAGGCGATTGGCCGTCTGTGG
TGGACCCACCCACCGCTCTATTCAAGTGGTGCCGATCGGCACGGATTGGGCCGCCGCCGACTACTACGGCGAGCCCGCGA
CGCGGCTGGGCCTTCGTCACGTCGGCTACATGATCCTCCTAAAGGAGAGCTCGCTCT-CCGCTAGTACCCCACCGGCGAC
CCCGTACTAACGGACCCCGCTGCCACCGCGCGGCGCGGATAGGACGTGACCAAGAAGGTGTACCTGGACCGGCAGAACGT
--------------------------------------------------------------------------------
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-------------------
>SNPs
---S---------S---S----------------------------------S----------S----------------
--SS----S-------S----------------S----S-------S---------S----------------------S
-------------------------------------------------------S---S-------S------------
---------------------S----------------S-------S----------------S----------------
-----------------------------------------------S------S-----------------S-------
-----S-S----SS------------------------------------------------------------------
-S-------------------------S---------S------------------------------------------
--------------------------------------------------------------------------------
------S---S-------S------S----------------------------------S------------------S
-------------------S-----------------S-S---------------------S------------------
------------S------------------------S------------------------------SSSSSS------
---------------------SS---------------------------------------------------------
------------SS-S-------------------------------------S----------------------S---
--------------------------------------------------S---------------S-------------
-----S-------------------------------------------S------------SS----------------
----------------SS--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
-------SSSSSSSSSS--------------------------------------S---SS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
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--------S-----------------------------------------------------------------------
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-------------S------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------S-------------------S-S-------------------------------------------
-------------------------------SSSS---S-----------------------------------------
-------------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------------------------------S---------------------------------
---------------------------------------------------SSSS-------------------------
----------S----------------------------------------SSSS-------------------------
--------------S-S---------------------------------------------------------------
------------------------------------------------S-------------------------------
-------------------------------------------------------S-----------------S------
-------------------------S-SS----------------------S----------------------------
-------S----------------------------------------SSSS----------------------------
----------------------------------------------------------------------S-------S-
-------------------------------------------------------------------------S------
------S-----------S--S------------------------------S---------------------------
-S-----------------
>forward_64
--------------------------------------------GCACCATACATAAGCCACGC----------------
--------------------------------------------------------------------------------
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-------------------
>reverse_1576
--------------------------------------------------------------------------------
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-------------------------------------------------------TGAGAAGTGCTCCGGGATCG-----
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-------------------
>forward_838
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TGGCGTACGATGGAAGTGTG------------------------------------------
--------------------------------------------------------------------------------
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-------------------
>reverse_4654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------CCGGTACGTCGGGTACAAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_1581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CAGCAGCAGCAGAGTGAGAA-------------------
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-------------------
>reverse_5254
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------CAGACAGTGAGCGGAGGAAG-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
