Multiple sequence alignment - TraesCS2D01G131800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G131800 chr2D 100.000 2627 0 0 1 2627 76803689 76801063 0.000000e+00 4852.0
1 TraesCS2D01G131800 chr2D 84.488 606 65 16 2040 2627 76748795 76749389 2.930000e-159 571.0
2 TraesCS2D01G131800 chr2B 91.252 2012 104 31 610 2602 118312905 118310947 0.000000e+00 2675.0
3 TraesCS2D01G131800 chr2B 84.256 578 69 13 1999 2568 117987551 117988114 6.390000e-151 544.0
4 TraesCS2D01G131800 chr2B 82.609 207 31 5 403 607 54443691 54443488 7.470000e-41 178.0
5 TraesCS2D01G131800 chr2A 88.387 1550 90 37 708 2207 77322188 77320679 0.000000e+00 1783.0
6 TraesCS2D01G131800 chr2A 91.461 445 25 2 2196 2627 77280929 77280485 1.350000e-167 599.0
7 TraesCS2D01G131800 chr2A 81.741 586 75 18 2040 2602 77235629 77236205 6.620000e-126 460.0
8 TraesCS2D01G131800 chr1B 93.041 388 27 0 1 388 583080740 583081127 3.790000e-158 568.0
9 TraesCS2D01G131800 chr7B 89.974 389 35 4 1 388 350096848 350096463 1.400000e-137 499.0
10 TraesCS2D01G131800 chr6D 86.316 190 25 1 418 607 446510563 446510751 3.430000e-49 206.0
11 TraesCS2D01G131800 chr4D 85.263 190 26 2 418 607 430880280 430880467 7.420000e-46 195.0
12 TraesCS2D01G131800 chr5D 84.737 190 28 1 418 607 362041217 362041405 3.450000e-44 189.0
13 TraesCS2D01G131800 chr5D 73.988 173 38 7 1150 1320 386151964 386151797 2.180000e-06 63.9
14 TraesCS2D01G131800 chr5A 82.609 207 31 5 403 607 2395913 2396116 7.470000e-41 178.0
15 TraesCS2D01G131800 chr5A 76.000 175 31 11 1150 1320 488024206 488024039 2.170000e-11 80.5
16 TraesCS2D01G131800 chr7D 82.126 207 33 4 403 607 581232681 581232477 9.660000e-40 174.0
17 TraesCS2D01G131800 chr7A 82.126 207 33 4 403 607 710480564 710480360 9.660000e-40 174.0
18 TraesCS2D01G131800 chr1D 82.126 207 33 4 403 607 298700952 298700748 9.660000e-40 174.0
19 TraesCS2D01G131800 chrUn 81.643 207 34 4 403 607 340011293 340011089 4.500000e-38 169.0
20 TraesCS2D01G131800 chr3B 74.934 379 79 12 16 386 536898674 536898304 2.710000e-35 159.0
21 TraesCS2D01G131800 chr3B 74.468 376 80 15 19 386 757502987 757503354 5.860000e-32 148.0
22 TraesCS2D01G131800 chr5B 74.286 175 34 11 1150 1320 463993611 463993444 2.180000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G131800 chr2D 76801063 76803689 2626 True 4852 4852 100.000 1 2627 1 chr2D.!!$R1 2626
1 TraesCS2D01G131800 chr2D 76748795 76749389 594 False 571 571 84.488 2040 2627 1 chr2D.!!$F1 587
2 TraesCS2D01G131800 chr2B 118310947 118312905 1958 True 2675 2675 91.252 610 2602 1 chr2B.!!$R2 1992
3 TraesCS2D01G131800 chr2B 117987551 117988114 563 False 544 544 84.256 1999 2568 1 chr2B.!!$F1 569
4 TraesCS2D01G131800 chr2A 77320679 77322188 1509 True 1783 1783 88.387 708 2207 1 chr2A.!!$R2 1499
5 TraesCS2D01G131800 chr2A 77235629 77236205 576 False 460 460 81.741 2040 2602 1 chr2A.!!$F1 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 360 0.03601 CATCGGCAAAGAGGAGGTGT 60.036 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2123 0.179166 CGTTTGATCGCCATGGTTGG 60.179 55.0 14.67 3.33 46.66 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.885814 AGGCCCGACTTGACAAGA 58.114 55.556 21.95 0.00 0.00 3.02
18 19 2.142220 AGGCCCGACTTGACAAGAA 58.858 52.632 21.95 0.00 0.00 2.52
19 20 0.250338 AGGCCCGACTTGACAAGAAC 60.250 55.000 21.95 13.20 0.00 3.01
20 21 1.235281 GGCCCGACTTGACAAGAACC 61.235 60.000 21.95 10.69 0.00 3.62
21 22 0.250338 GCCCGACTTGACAAGAACCT 60.250 55.000 21.95 0.00 0.00 3.50
22 23 1.797025 CCCGACTTGACAAGAACCTC 58.203 55.000 21.95 7.73 0.00 3.85
23 24 1.344763 CCCGACTTGACAAGAACCTCT 59.655 52.381 21.95 0.00 0.00 3.69
24 25 2.610727 CCCGACTTGACAAGAACCTCTC 60.611 54.545 21.95 6.68 0.00 3.20
25 26 2.297597 CCGACTTGACAAGAACCTCTCT 59.702 50.000 21.95 0.00 35.13 3.10
26 27 3.570559 CGACTTGACAAGAACCTCTCTC 58.429 50.000 21.95 5.29 31.02 3.20
27 28 3.004839 CGACTTGACAAGAACCTCTCTCA 59.995 47.826 21.95 0.00 31.02 3.27
28 29 4.303282 GACTTGACAAGAACCTCTCTCAC 58.697 47.826 21.95 0.00 31.02 3.51
29 30 3.706594 ACTTGACAAGAACCTCTCTCACA 59.293 43.478 21.95 0.00 31.02 3.58
30 31 4.202202 ACTTGACAAGAACCTCTCTCACAG 60.202 45.833 21.95 0.00 31.02 3.66
31 32 2.036475 TGACAAGAACCTCTCTCACAGC 59.964 50.000 0.00 0.00 31.02 4.40
32 33 1.346068 ACAAGAACCTCTCTCACAGCC 59.654 52.381 0.00 0.00 31.02 4.85
33 34 1.622811 CAAGAACCTCTCTCACAGCCT 59.377 52.381 0.00 0.00 31.02 4.58
34 35 2.022718 AGAACCTCTCTCACAGCCTT 57.977 50.000 0.00 0.00 0.00 4.35
35 36 2.334023 AGAACCTCTCTCACAGCCTTT 58.666 47.619 0.00 0.00 0.00 3.11
36 37 2.038295 AGAACCTCTCTCACAGCCTTTG 59.962 50.000 0.00 0.00 0.00 2.77
37 38 1.722034 ACCTCTCTCACAGCCTTTGA 58.278 50.000 0.00 0.00 0.00 2.69
38 39 1.346068 ACCTCTCTCACAGCCTTTGAC 59.654 52.381 0.00 0.00 0.00 3.18
39 40 1.345741 CCTCTCTCACAGCCTTTGACA 59.654 52.381 0.00 0.00 0.00 3.58
40 41 2.224378 CCTCTCTCACAGCCTTTGACAA 60.224 50.000 0.00 0.00 0.00 3.18
41 42 3.470709 CTCTCTCACAGCCTTTGACAAA 58.529 45.455 0.00 0.00 0.00 2.83
42 43 3.206150 TCTCTCACAGCCTTTGACAAAC 58.794 45.455 0.00 0.00 0.00 2.93
43 44 2.291741 CTCTCACAGCCTTTGACAAACC 59.708 50.000 0.00 0.00 0.00 3.27
44 45 2.092429 TCTCACAGCCTTTGACAAACCT 60.092 45.455 0.00 0.00 0.00 3.50
45 46 2.689983 CTCACAGCCTTTGACAAACCTT 59.310 45.455 0.00 0.00 0.00 3.50
46 47 2.426738 TCACAGCCTTTGACAAACCTTG 59.573 45.455 0.00 0.00 0.00 3.61
57 58 2.876581 ACAAACCTTGTCCCTTCCATC 58.123 47.619 0.00 0.00 40.56 3.51
58 59 2.171003 CAAACCTTGTCCCTTCCATCC 58.829 52.381 0.00 0.00 0.00 3.51
59 60 1.455822 AACCTTGTCCCTTCCATCCA 58.544 50.000 0.00 0.00 0.00 3.41
60 61 0.698818 ACCTTGTCCCTTCCATCCAC 59.301 55.000 0.00 0.00 0.00 4.02
61 62 0.995024 CCTTGTCCCTTCCATCCACT 59.005 55.000 0.00 0.00 0.00 4.00
62 63 2.196595 CCTTGTCCCTTCCATCCACTA 58.803 52.381 0.00 0.00 0.00 2.74
63 64 2.576191 CCTTGTCCCTTCCATCCACTAA 59.424 50.000 0.00 0.00 0.00 2.24
64 65 3.610911 CTTGTCCCTTCCATCCACTAAC 58.389 50.000 0.00 0.00 0.00 2.34
65 66 1.913419 TGTCCCTTCCATCCACTAACC 59.087 52.381 0.00 0.00 0.00 2.85
66 67 2.197465 GTCCCTTCCATCCACTAACCT 58.803 52.381 0.00 0.00 0.00 3.50
67 68 2.576648 GTCCCTTCCATCCACTAACCTT 59.423 50.000 0.00 0.00 0.00 3.50
68 69 3.010250 GTCCCTTCCATCCACTAACCTTT 59.990 47.826 0.00 0.00 0.00 3.11
69 70 3.265995 TCCCTTCCATCCACTAACCTTTC 59.734 47.826 0.00 0.00 0.00 2.62
70 71 3.621558 CCTTCCATCCACTAACCTTTCC 58.378 50.000 0.00 0.00 0.00 3.13
71 72 3.267031 CCTTCCATCCACTAACCTTTCCT 59.733 47.826 0.00 0.00 0.00 3.36
72 73 4.263949 CCTTCCATCCACTAACCTTTCCTT 60.264 45.833 0.00 0.00 0.00 3.36
73 74 5.325239 CTTCCATCCACTAACCTTTCCTTT 58.675 41.667 0.00 0.00 0.00 3.11
74 75 5.333566 TCCATCCACTAACCTTTCCTTTT 57.666 39.130 0.00 0.00 0.00 2.27
75 76 5.076873 TCCATCCACTAACCTTTCCTTTTG 58.923 41.667 0.00 0.00 0.00 2.44
76 77 5.076873 CCATCCACTAACCTTTCCTTTTGA 58.923 41.667 0.00 0.00 0.00 2.69
77 78 5.183904 CCATCCACTAACCTTTCCTTTTGAG 59.816 44.000 0.00 0.00 0.00 3.02
78 79 4.725490 TCCACTAACCTTTCCTTTTGAGG 58.275 43.478 0.00 0.00 36.62 3.86
79 80 4.414182 TCCACTAACCTTTCCTTTTGAGGA 59.586 41.667 0.00 0.00 34.61 3.71
80 81 5.074515 TCCACTAACCTTTCCTTTTGAGGAT 59.925 40.000 0.00 0.00 37.87 3.24
81 82 5.775195 CCACTAACCTTTCCTTTTGAGGATT 59.225 40.000 0.00 0.00 37.87 3.01
82 83 6.071896 CCACTAACCTTTCCTTTTGAGGATTC 60.072 42.308 0.00 0.00 37.87 2.52
83 84 6.490040 CACTAACCTTTCCTTTTGAGGATTCA 59.510 38.462 0.00 0.00 37.87 2.57
84 85 6.717084 ACTAACCTTTCCTTTTGAGGATTCAG 59.283 38.462 0.00 0.00 37.87 3.02
85 86 5.066913 ACCTTTCCTTTTGAGGATTCAGT 57.933 39.130 0.00 0.00 37.87 3.41
86 87 5.458595 ACCTTTCCTTTTGAGGATTCAGTT 58.541 37.500 0.00 0.00 37.87 3.16
87 88 6.610830 ACCTTTCCTTTTGAGGATTCAGTTA 58.389 36.000 0.00 0.00 37.87 2.24
88 89 6.490381 ACCTTTCCTTTTGAGGATTCAGTTAC 59.510 38.462 0.00 0.00 37.87 2.50
89 90 6.490040 CCTTTCCTTTTGAGGATTCAGTTACA 59.510 38.462 0.00 0.00 37.87 2.41
90 91 7.177392 CCTTTCCTTTTGAGGATTCAGTTACAT 59.823 37.037 0.00 0.00 37.87 2.29
91 92 9.231297 CTTTCCTTTTGAGGATTCAGTTACATA 57.769 33.333 0.00 0.00 37.87 2.29
92 93 9.753674 TTTCCTTTTGAGGATTCAGTTACATAT 57.246 29.630 0.00 0.00 37.87 1.78
93 94 9.753674 TTCCTTTTGAGGATTCAGTTACATATT 57.246 29.630 0.00 0.00 37.87 1.28
94 95 9.753674 TCCTTTTGAGGATTCAGTTACATATTT 57.246 29.630 0.00 0.00 34.15 1.40
95 96 9.793252 CCTTTTGAGGATTCAGTTACATATTTG 57.207 33.333 0.00 0.00 34.15 2.32
100 101 9.739276 TGAGGATTCAGTTACATATTTGAAAGT 57.261 29.630 0.00 0.00 33.71 2.66
119 120 9.527157 TTGAAAGTACCATATTTTGATCTTCCA 57.473 29.630 0.00 0.00 0.00 3.53
120 121 9.527157 TGAAAGTACCATATTTTGATCTTCCAA 57.473 29.630 0.00 0.00 0.00 3.53
121 122 9.788960 GAAAGTACCATATTTTGATCTTCCAAC 57.211 33.333 0.00 0.00 0.00 3.77
122 123 9.533831 AAAGTACCATATTTTGATCTTCCAACT 57.466 29.630 0.00 0.00 0.00 3.16
127 128 9.479549 ACCATATTTTGATCTTCCAACTAATGT 57.520 29.630 0.00 0.00 0.00 2.71
149 150 2.757894 GGAGACCCAGGTATCTCTCA 57.242 55.000 11.05 0.00 41.05 3.27
150 151 2.312390 GGAGACCCAGGTATCTCTCAC 58.688 57.143 11.05 0.00 41.05 3.51
151 152 2.091555 GGAGACCCAGGTATCTCTCACT 60.092 54.545 11.05 0.00 41.05 3.41
152 153 3.219281 GAGACCCAGGTATCTCTCACTC 58.781 54.545 4.18 0.00 38.67 3.51
153 154 2.583101 AGACCCAGGTATCTCTCACTCA 59.417 50.000 0.00 0.00 0.00 3.41
154 155 3.011821 AGACCCAGGTATCTCTCACTCAA 59.988 47.826 0.00 0.00 0.00 3.02
155 156 3.769844 GACCCAGGTATCTCTCACTCAAA 59.230 47.826 0.00 0.00 0.00 2.69
156 157 3.772025 ACCCAGGTATCTCTCACTCAAAG 59.228 47.826 0.00 0.00 0.00 2.77
157 158 3.431486 CCCAGGTATCTCTCACTCAAAGC 60.431 52.174 0.00 0.00 0.00 3.51
158 159 3.450457 CCAGGTATCTCTCACTCAAAGCT 59.550 47.826 0.00 0.00 0.00 3.74
159 160 4.081198 CCAGGTATCTCTCACTCAAAGCTT 60.081 45.833 0.00 0.00 0.00 3.74
160 161 5.108517 CAGGTATCTCTCACTCAAAGCTTC 58.891 45.833 0.00 0.00 0.00 3.86
161 162 4.109050 GGTATCTCTCACTCAAAGCTTCG 58.891 47.826 0.00 0.00 0.00 3.79
162 163 2.732412 TCTCTCACTCAAAGCTTCGG 57.268 50.000 0.00 0.00 0.00 4.30
163 164 2.239400 TCTCTCACTCAAAGCTTCGGA 58.761 47.619 0.00 0.00 0.00 4.55
164 165 2.029828 TCTCTCACTCAAAGCTTCGGAC 60.030 50.000 0.00 0.00 0.00 4.79
165 166 1.964223 TCTCACTCAAAGCTTCGGACT 59.036 47.619 0.00 0.00 0.00 3.85
166 167 2.064762 CTCACTCAAAGCTTCGGACTG 58.935 52.381 0.00 0.00 0.00 3.51
167 168 0.514691 CACTCAAAGCTTCGGACTGC 59.485 55.000 0.00 0.00 0.00 4.40
168 169 0.106708 ACTCAAAGCTTCGGACTGCA 59.893 50.000 0.00 0.00 0.00 4.41
169 170 0.514691 CTCAAAGCTTCGGACTGCAC 59.485 55.000 0.00 0.00 0.00 4.57
170 171 0.179059 TCAAAGCTTCGGACTGCACA 60.179 50.000 0.00 0.00 0.00 4.57
171 172 0.040958 CAAAGCTTCGGACTGCACAC 60.041 55.000 0.00 0.00 0.00 3.82
172 173 1.166531 AAAGCTTCGGACTGCACACC 61.167 55.000 0.00 0.00 0.00 4.16
173 174 2.280797 GCTTCGGACTGCACACCA 60.281 61.111 5.45 0.00 0.00 4.17
174 175 1.891919 GCTTCGGACTGCACACCAA 60.892 57.895 5.45 0.00 0.00 3.67
175 176 1.845809 GCTTCGGACTGCACACCAAG 61.846 60.000 5.45 8.05 0.00 3.61
176 177 0.532862 CTTCGGACTGCACACCAAGT 60.533 55.000 5.45 0.00 0.00 3.16
190 191 2.781945 CCAAGTGTGGTTTTGAGCTC 57.218 50.000 6.82 6.82 40.42 4.09
191 192 1.338020 CCAAGTGTGGTTTTGAGCTCC 59.662 52.381 12.15 0.00 40.42 4.70
192 193 1.002468 CAAGTGTGGTTTTGAGCTCCG 60.002 52.381 12.15 0.00 0.00 4.63
193 194 0.180406 AGTGTGGTTTTGAGCTCCGT 59.820 50.000 12.15 0.00 0.00 4.69
194 195 1.021968 GTGTGGTTTTGAGCTCCGTT 58.978 50.000 12.15 0.00 0.00 4.44
195 196 1.404035 GTGTGGTTTTGAGCTCCGTTT 59.596 47.619 12.15 0.00 0.00 3.60
196 197 2.096248 TGTGGTTTTGAGCTCCGTTTT 58.904 42.857 12.15 0.00 0.00 2.43
197 198 2.098443 TGTGGTTTTGAGCTCCGTTTTC 59.902 45.455 12.15 0.00 0.00 2.29
198 199 2.357952 GTGGTTTTGAGCTCCGTTTTCT 59.642 45.455 12.15 0.00 0.00 2.52
199 200 3.020984 TGGTTTTGAGCTCCGTTTTCTT 58.979 40.909 12.15 0.00 0.00 2.52
200 201 3.066203 TGGTTTTGAGCTCCGTTTTCTTC 59.934 43.478 12.15 0.00 0.00 2.87
201 202 3.315470 GGTTTTGAGCTCCGTTTTCTTCT 59.685 43.478 12.15 0.00 0.00 2.85
202 203 4.528504 GTTTTGAGCTCCGTTTTCTTCTC 58.471 43.478 12.15 0.00 0.00 2.87
203 204 2.457366 TGAGCTCCGTTTTCTTCTCC 57.543 50.000 12.15 0.00 0.00 3.71
204 205 1.971357 TGAGCTCCGTTTTCTTCTCCT 59.029 47.619 12.15 0.00 0.00 3.69
205 206 2.028930 TGAGCTCCGTTTTCTTCTCCTC 60.029 50.000 12.15 0.00 0.00 3.71
206 207 2.232696 GAGCTCCGTTTTCTTCTCCTCT 59.767 50.000 0.87 0.00 0.00 3.69
207 208 2.635427 AGCTCCGTTTTCTTCTCCTCTT 59.365 45.455 0.00 0.00 0.00 2.85
208 209 2.739379 GCTCCGTTTTCTTCTCCTCTTG 59.261 50.000 0.00 0.00 0.00 3.02
209 210 3.555168 GCTCCGTTTTCTTCTCCTCTTGA 60.555 47.826 0.00 0.00 0.00 3.02
210 211 3.991121 CTCCGTTTTCTTCTCCTCTTGAC 59.009 47.826 0.00 0.00 0.00 3.18
211 212 3.386726 TCCGTTTTCTTCTCCTCTTGACA 59.613 43.478 0.00 0.00 0.00 3.58
212 213 4.127171 CCGTTTTCTTCTCCTCTTGACAA 58.873 43.478 0.00 0.00 0.00 3.18
213 214 4.024809 CCGTTTTCTTCTCCTCTTGACAAC 60.025 45.833 0.00 0.00 0.00 3.32
214 215 4.024809 CGTTTTCTTCTCCTCTTGACAACC 60.025 45.833 0.00 0.00 0.00 3.77
215 216 3.771577 TTCTTCTCCTCTTGACAACCC 57.228 47.619 0.00 0.00 0.00 4.11
216 217 2.977808 TCTTCTCCTCTTGACAACCCT 58.022 47.619 0.00 0.00 0.00 4.34
217 218 3.318313 TCTTCTCCTCTTGACAACCCTT 58.682 45.455 0.00 0.00 0.00 3.95
218 219 3.325135 TCTTCTCCTCTTGACAACCCTTC 59.675 47.826 0.00 0.00 0.00 3.46
219 220 1.978580 TCTCCTCTTGACAACCCTTCC 59.021 52.381 0.00 0.00 0.00 3.46
220 221 1.003696 CTCCTCTTGACAACCCTTCCC 59.996 57.143 0.00 0.00 0.00 3.97
221 222 0.321653 CCTCTTGACAACCCTTCCCG 60.322 60.000 0.00 0.00 0.00 5.14
222 223 0.685097 CTCTTGACAACCCTTCCCGA 59.315 55.000 0.00 0.00 0.00 5.14
223 224 1.071699 CTCTTGACAACCCTTCCCGAA 59.928 52.381 0.00 0.00 0.00 4.30
224 225 1.071699 TCTTGACAACCCTTCCCGAAG 59.928 52.381 0.00 0.00 38.14 3.79
225 226 1.071699 CTTGACAACCCTTCCCGAAGA 59.928 52.381 6.01 0.00 40.79 2.87
226 227 1.133363 TGACAACCCTTCCCGAAGAA 58.867 50.000 6.01 0.00 40.79 2.52
237 238 4.672587 TTCCCGAAGAAGATCGATGATT 57.327 40.909 0.54 0.00 45.48 2.57
238 239 4.672587 TCCCGAAGAAGATCGATGATTT 57.327 40.909 0.54 0.00 45.48 2.17
239 240 5.023533 TCCCGAAGAAGATCGATGATTTT 57.976 39.130 0.54 0.00 45.48 1.82
240 241 5.428253 TCCCGAAGAAGATCGATGATTTTT 58.572 37.500 0.54 0.00 45.48 1.94
241 242 5.294306 TCCCGAAGAAGATCGATGATTTTTG 59.706 40.000 0.54 0.00 45.48 2.44
242 243 5.065218 CCCGAAGAAGATCGATGATTTTTGT 59.935 40.000 0.54 0.00 45.48 2.83
243 244 6.257849 CCCGAAGAAGATCGATGATTTTTGTA 59.742 38.462 0.54 0.00 45.48 2.41
244 245 7.340699 CCGAAGAAGATCGATGATTTTTGTAG 58.659 38.462 0.54 0.00 45.48 2.74
245 246 7.340699 CGAAGAAGATCGATGATTTTTGTAGG 58.659 38.462 0.54 0.00 45.48 3.18
246 247 7.010552 CGAAGAAGATCGATGATTTTTGTAGGT 59.989 37.037 0.54 0.00 45.48 3.08
247 248 8.567285 AAGAAGATCGATGATTTTTGTAGGTT 57.433 30.769 0.54 0.00 0.00 3.50
248 249 7.978982 AGAAGATCGATGATTTTTGTAGGTTG 58.021 34.615 0.54 0.00 0.00 3.77
249 250 7.824289 AGAAGATCGATGATTTTTGTAGGTTGA 59.176 33.333 0.54 0.00 0.00 3.18
250 251 7.308782 AGATCGATGATTTTTGTAGGTTGAC 57.691 36.000 0.54 0.00 0.00 3.18
251 252 7.106239 AGATCGATGATTTTTGTAGGTTGACT 58.894 34.615 0.54 0.00 0.00 3.41
252 253 6.721571 TCGATGATTTTTGTAGGTTGACTC 57.278 37.500 0.00 0.00 0.00 3.36
253 254 5.347635 TCGATGATTTTTGTAGGTTGACTCG 59.652 40.000 0.00 0.00 0.00 4.18
254 255 5.347635 CGATGATTTTTGTAGGTTGACTCGA 59.652 40.000 0.00 0.00 0.00 4.04
255 256 6.036083 CGATGATTTTTGTAGGTTGACTCGAT 59.964 38.462 0.00 0.00 0.00 3.59
256 257 6.480524 TGATTTTTGTAGGTTGACTCGATG 57.519 37.500 0.00 0.00 0.00 3.84
257 258 5.995282 TGATTTTTGTAGGTTGACTCGATGT 59.005 36.000 0.00 0.00 0.00 3.06
258 259 5.917541 TTTTTGTAGGTTGACTCGATGTC 57.082 39.130 7.74 7.74 45.54 3.06
259 260 3.587797 TTGTAGGTTGACTCGATGTCC 57.412 47.619 11.01 0.00 44.75 4.02
260 261 2.521126 TGTAGGTTGACTCGATGTCCA 58.479 47.619 11.01 0.23 44.75 4.02
261 262 2.492088 TGTAGGTTGACTCGATGTCCAG 59.508 50.000 11.01 0.00 44.75 3.86
262 263 1.924731 AGGTTGACTCGATGTCCAGA 58.075 50.000 11.01 0.00 44.75 3.86
263 264 1.821753 AGGTTGACTCGATGTCCAGAG 59.178 52.381 11.01 0.00 44.75 3.35
264 265 1.134965 GGTTGACTCGATGTCCAGAGG 60.135 57.143 11.01 0.00 44.75 3.69
265 266 0.532573 TTGACTCGATGTCCAGAGGC 59.467 55.000 11.01 0.00 44.75 4.70
266 267 0.323816 TGACTCGATGTCCAGAGGCT 60.324 55.000 11.01 0.00 44.75 4.58
267 268 1.064685 TGACTCGATGTCCAGAGGCTA 60.065 52.381 11.01 0.00 44.75 3.93
268 269 1.335496 GACTCGATGTCCAGAGGCTAC 59.665 57.143 0.00 0.00 39.36 3.58
269 270 1.064314 ACTCGATGTCCAGAGGCTACT 60.064 52.381 0.00 0.00 38.72 2.57
270 271 2.028130 CTCGATGTCCAGAGGCTACTT 58.972 52.381 0.00 0.00 0.00 2.24
271 272 2.025155 TCGATGTCCAGAGGCTACTTC 58.975 52.381 0.00 0.00 0.00 3.01
272 273 2.028130 CGATGTCCAGAGGCTACTTCT 58.972 52.381 0.00 0.00 0.00 2.85
273 274 2.428890 CGATGTCCAGAGGCTACTTCTT 59.571 50.000 0.00 0.00 0.00 2.52
274 275 3.632604 CGATGTCCAGAGGCTACTTCTTA 59.367 47.826 0.00 0.00 0.00 2.10
275 276 4.279671 CGATGTCCAGAGGCTACTTCTTAT 59.720 45.833 0.00 0.00 0.00 1.73
276 277 5.221342 CGATGTCCAGAGGCTACTTCTTATT 60.221 44.000 0.00 0.00 0.00 1.40
277 278 5.344743 TGTCCAGAGGCTACTTCTTATTG 57.655 43.478 0.00 0.00 0.00 1.90
278 279 4.123506 GTCCAGAGGCTACTTCTTATTGC 58.876 47.826 0.00 0.00 0.00 3.56
279 280 3.126831 CCAGAGGCTACTTCTTATTGCG 58.873 50.000 0.00 0.00 0.00 4.85
280 281 2.541762 CAGAGGCTACTTCTTATTGCGC 59.458 50.000 0.00 0.00 0.00 6.09
281 282 2.432510 AGAGGCTACTTCTTATTGCGCT 59.567 45.455 9.73 0.00 0.00 5.92
282 283 3.637229 AGAGGCTACTTCTTATTGCGCTA 59.363 43.478 9.73 0.00 0.00 4.26
283 284 4.099573 AGAGGCTACTTCTTATTGCGCTAA 59.900 41.667 9.73 1.22 0.00 3.09
284 285 4.372656 AGGCTACTTCTTATTGCGCTAAG 58.627 43.478 9.73 9.61 0.00 2.18
285 286 4.099573 AGGCTACTTCTTATTGCGCTAAGA 59.900 41.667 13.43 13.43 36.25 2.10
286 287 4.991687 GGCTACTTCTTATTGCGCTAAGAT 59.008 41.667 16.97 8.30 37.52 2.40
287 288 6.015350 AGGCTACTTCTTATTGCGCTAAGATA 60.015 38.462 16.97 8.87 37.52 1.98
288 289 6.814146 GGCTACTTCTTATTGCGCTAAGATAT 59.186 38.462 16.97 11.78 37.52 1.63
289 290 7.009723 GGCTACTTCTTATTGCGCTAAGATATC 59.990 40.741 16.97 6.28 37.52 1.63
290 291 7.009723 GCTACTTCTTATTGCGCTAAGATATCC 59.990 40.741 16.97 5.07 37.52 2.59
291 292 6.998802 ACTTCTTATTGCGCTAAGATATCCT 58.001 36.000 16.97 0.00 37.52 3.24
292 293 7.445945 ACTTCTTATTGCGCTAAGATATCCTT 58.554 34.615 16.97 0.00 37.52 3.36
293 294 7.386299 ACTTCTTATTGCGCTAAGATATCCTTG 59.614 37.037 16.97 7.07 37.52 3.61
294 295 6.993079 TCTTATTGCGCTAAGATATCCTTGA 58.007 36.000 13.43 0.00 33.78 3.02
295 296 7.093354 TCTTATTGCGCTAAGATATCCTTGAG 58.907 38.462 13.43 0.00 33.78 3.02
296 297 4.937201 TTGCGCTAAGATATCCTTGAGA 57.063 40.909 9.73 0.00 36.34 3.27
297 298 4.511617 TGCGCTAAGATATCCTTGAGAG 57.488 45.455 9.73 0.00 36.34 3.20
298 299 3.249917 GCGCTAAGATATCCTTGAGAGC 58.750 50.000 0.00 1.87 36.34 4.09
299 300 3.843999 CGCTAAGATATCCTTGAGAGCC 58.156 50.000 0.00 0.00 32.82 4.70
300 301 3.509575 CGCTAAGATATCCTTGAGAGCCT 59.490 47.826 0.00 0.00 32.82 4.58
301 302 4.380444 CGCTAAGATATCCTTGAGAGCCTC 60.380 50.000 0.00 0.00 32.82 4.70
302 303 4.081697 GCTAAGATATCCTTGAGAGCCTCC 60.082 50.000 0.00 0.00 36.34 4.30
303 304 3.627041 AGATATCCTTGAGAGCCTCCA 57.373 47.619 0.00 0.00 0.00 3.86
304 305 4.144825 AGATATCCTTGAGAGCCTCCAT 57.855 45.455 0.00 0.00 0.00 3.41
305 306 5.282436 AGATATCCTTGAGAGCCTCCATA 57.718 43.478 0.00 0.00 0.00 2.74
306 307 5.852558 AGATATCCTTGAGAGCCTCCATAT 58.147 41.667 0.00 0.00 0.00 1.78
307 308 6.270755 AGATATCCTTGAGAGCCTCCATATT 58.729 40.000 0.00 0.00 0.00 1.28
308 309 4.906747 ATCCTTGAGAGCCTCCATATTC 57.093 45.455 0.00 0.00 0.00 1.75
309 310 3.933886 TCCTTGAGAGCCTCCATATTCT 58.066 45.455 0.00 0.00 0.00 2.40
310 311 3.900601 TCCTTGAGAGCCTCCATATTCTC 59.099 47.826 0.00 0.00 37.24 2.87
311 312 3.903090 CCTTGAGAGCCTCCATATTCTCT 59.097 47.826 0.00 0.00 37.53 3.10
312 313 4.347583 CCTTGAGAGCCTCCATATTCTCTT 59.652 45.833 0.00 0.00 37.53 2.85
313 314 5.163216 CCTTGAGAGCCTCCATATTCTCTTT 60.163 44.000 0.00 0.00 37.53 2.52
314 315 6.042552 CCTTGAGAGCCTCCATATTCTCTTTA 59.957 42.308 0.00 0.00 37.53 1.85
315 316 6.662865 TGAGAGCCTCCATATTCTCTTTAG 57.337 41.667 0.00 0.00 37.53 1.85
316 317 6.139671 TGAGAGCCTCCATATTCTCTTTAGT 58.860 40.000 0.00 0.00 37.53 2.24
317 318 6.266558 TGAGAGCCTCCATATTCTCTTTAGTC 59.733 42.308 0.00 0.00 37.53 2.59
318 319 5.542251 AGAGCCTCCATATTCTCTTTAGTCC 59.458 44.000 0.00 0.00 32.44 3.85
319 320 4.595350 AGCCTCCATATTCTCTTTAGTCCC 59.405 45.833 0.00 0.00 0.00 4.46
320 321 4.263112 GCCTCCATATTCTCTTTAGTCCCC 60.263 50.000 0.00 0.00 0.00 4.81
321 322 5.158889 CCTCCATATTCTCTTTAGTCCCCT 58.841 45.833 0.00 0.00 0.00 4.79
322 323 5.247337 CCTCCATATTCTCTTTAGTCCCCTC 59.753 48.000 0.00 0.00 0.00 4.30
323 324 5.788430 TCCATATTCTCTTTAGTCCCCTCA 58.212 41.667 0.00 0.00 0.00 3.86
324 325 6.209774 TCCATATTCTCTTTAGTCCCCTCAA 58.790 40.000 0.00 0.00 0.00 3.02
325 326 6.327626 TCCATATTCTCTTTAGTCCCCTCAAG 59.672 42.308 0.00 0.00 0.00 3.02
326 327 6.327626 CCATATTCTCTTTAGTCCCCTCAAGA 59.672 42.308 0.00 0.00 31.70 3.02
327 328 7.147479 CCATATTCTCTTTAGTCCCCTCAAGAA 60.147 40.741 0.00 0.00 32.09 2.52
328 329 6.704056 ATTCTCTTTAGTCCCCTCAAGAAA 57.296 37.500 0.00 0.00 32.09 2.52
329 330 5.746990 TCTCTTTAGTCCCCTCAAGAAAG 57.253 43.478 0.00 0.00 32.09 2.62
330 331 5.403512 TCTCTTTAGTCCCCTCAAGAAAGA 58.596 41.667 0.00 0.00 32.09 2.52
331 332 5.246429 TCTCTTTAGTCCCCTCAAGAAAGAC 59.754 44.000 0.00 0.00 32.09 3.01
332 333 4.905456 TCTTTAGTCCCCTCAAGAAAGACA 59.095 41.667 0.00 0.00 29.97 3.41
333 334 5.368523 TCTTTAGTCCCCTCAAGAAAGACAA 59.631 40.000 0.00 0.00 29.97 3.18
334 335 5.843019 TTAGTCCCCTCAAGAAAGACAAT 57.157 39.130 0.00 0.00 0.00 2.71
335 336 6.945636 TTAGTCCCCTCAAGAAAGACAATA 57.054 37.500 0.00 0.00 0.00 1.90
336 337 5.167303 AGTCCCCTCAAGAAAGACAATAC 57.833 43.478 0.00 0.00 0.00 1.89
337 338 4.846940 AGTCCCCTCAAGAAAGACAATACT 59.153 41.667 0.00 0.00 0.00 2.12
338 339 4.938226 GTCCCCTCAAGAAAGACAATACTG 59.062 45.833 0.00 0.00 0.00 2.74
339 340 4.597507 TCCCCTCAAGAAAGACAATACTGT 59.402 41.667 0.00 0.00 38.98 3.55
351 352 3.937814 ACAATACTGTCATCGGCAAAGA 58.062 40.909 0.00 0.00 0.00 2.52
352 353 3.935203 ACAATACTGTCATCGGCAAAGAG 59.065 43.478 0.00 0.00 0.00 2.85
353 354 2.672961 TACTGTCATCGGCAAAGAGG 57.327 50.000 0.00 0.00 0.00 3.69
354 355 0.976641 ACTGTCATCGGCAAAGAGGA 59.023 50.000 0.00 0.00 0.00 3.71
355 356 1.066573 ACTGTCATCGGCAAAGAGGAG 60.067 52.381 0.00 0.00 31.19 3.69
356 357 0.250234 TGTCATCGGCAAAGAGGAGG 59.750 55.000 0.00 0.00 31.19 4.30
357 358 0.250513 GTCATCGGCAAAGAGGAGGT 59.749 55.000 0.00 0.00 31.19 3.85
358 359 0.250234 TCATCGGCAAAGAGGAGGTG 59.750 55.000 0.00 0.00 0.00 4.00
359 360 0.036010 CATCGGCAAAGAGGAGGTGT 60.036 55.000 0.00 0.00 0.00 4.16
360 361 0.036010 ATCGGCAAAGAGGAGGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
361 362 1.071471 CGGCAAAGAGGAGGTGTGT 59.929 57.895 0.00 0.00 0.00 3.72
362 363 0.320374 CGGCAAAGAGGAGGTGTGTA 59.680 55.000 0.00 0.00 0.00 2.90
363 364 1.270625 CGGCAAAGAGGAGGTGTGTAA 60.271 52.381 0.00 0.00 0.00 2.41
364 365 2.152016 GGCAAAGAGGAGGTGTGTAAC 58.848 52.381 0.00 0.00 37.35 2.50
377 378 3.610040 TGTGTAACATGAGGGCTAGTG 57.390 47.619 0.00 0.00 45.67 2.74
378 379 2.280628 GTGTAACATGAGGGCTAGTGC 58.719 52.381 0.00 0.00 36.32 4.40
391 392 2.031870 GCTAGTGCCCCCAAAATAAGG 58.968 52.381 0.00 0.00 0.00 2.69
392 393 2.623239 GCTAGTGCCCCCAAAATAAGGT 60.623 50.000 0.00 0.00 0.00 3.50
393 394 1.937191 AGTGCCCCCAAAATAAGGTG 58.063 50.000 0.00 0.00 0.00 4.00
394 395 1.431243 AGTGCCCCCAAAATAAGGTGA 59.569 47.619 0.00 0.00 0.00 4.02
395 396 2.158234 AGTGCCCCCAAAATAAGGTGAA 60.158 45.455 0.00 0.00 0.00 3.18
396 397 2.028476 GTGCCCCCAAAATAAGGTGAAC 60.028 50.000 0.00 0.00 0.00 3.18
397 398 2.252714 GCCCCCAAAATAAGGTGAACA 58.747 47.619 0.00 0.00 0.00 3.18
398 399 2.837591 GCCCCCAAAATAAGGTGAACAT 59.162 45.455 0.00 0.00 0.00 2.71
399 400 3.263170 GCCCCCAAAATAAGGTGAACATT 59.737 43.478 0.00 0.00 0.00 2.71
400 401 4.263287 GCCCCCAAAATAAGGTGAACATTT 60.263 41.667 0.00 0.00 0.00 2.32
401 402 5.747545 GCCCCCAAAATAAGGTGAACATTTT 60.748 40.000 0.00 0.00 33.31 1.82
402 403 5.704978 CCCCCAAAATAAGGTGAACATTTTG 59.295 40.000 10.55 10.55 43.99 2.44
403 404 6.295249 CCCCAAAATAAGGTGAACATTTTGT 58.705 36.000 14.45 0.00 43.36 2.83
404 405 6.770303 CCCCAAAATAAGGTGAACATTTTGTT 59.230 34.615 14.45 0.00 43.36 2.83
405 406 7.934120 CCCCAAAATAAGGTGAACATTTTGTTA 59.066 33.333 14.45 0.00 43.36 2.41
406 407 9.331282 CCCAAAATAAGGTGAACATTTTGTTAA 57.669 29.630 14.45 0.00 43.36 2.01
408 409 9.842444 CAAAATAAGGTGAACATTTTGTTAACG 57.158 29.630 0.26 0.00 41.60 3.18
409 410 8.582433 AAATAAGGTGAACATTTTGTTAACGG 57.418 30.769 0.26 0.00 41.60 4.44
410 411 5.585820 AAGGTGAACATTTTGTTAACGGT 57.414 34.783 0.26 0.00 41.60 4.83
411 412 5.177725 AGGTGAACATTTTGTTAACGGTC 57.822 39.130 0.26 0.00 41.60 4.79
412 413 4.641094 AGGTGAACATTTTGTTAACGGTCA 59.359 37.500 0.26 0.00 41.60 4.02
413 414 5.125739 AGGTGAACATTTTGTTAACGGTCAA 59.874 36.000 0.26 0.00 41.60 3.18
414 415 5.805994 GGTGAACATTTTGTTAACGGTCAAA 59.194 36.000 0.26 0.00 41.60 2.69
415 416 6.237622 GGTGAACATTTTGTTAACGGTCAAAC 60.238 38.462 0.26 0.70 41.60 2.93
416 417 6.308282 GTGAACATTTTGTTAACGGTCAAACA 59.692 34.615 0.26 5.25 41.28 2.83
417 418 6.866770 TGAACATTTTGTTAACGGTCAAACAA 59.133 30.769 14.27 14.27 41.28 2.83
422 423 5.373981 TTGTTAACGGTCAAACAAACAGT 57.626 34.783 15.34 0.00 41.34 3.55
423 424 4.972201 TGTTAACGGTCAAACAAACAGTC 58.028 39.130 0.26 0.00 32.86 3.51
424 425 4.454847 TGTTAACGGTCAAACAAACAGTCA 59.545 37.500 0.26 0.00 32.86 3.41
425 426 5.048921 TGTTAACGGTCAAACAAACAGTCAA 60.049 36.000 0.26 0.00 32.86 3.18
426 427 4.506886 AACGGTCAAACAAACAGTCAAA 57.493 36.364 0.00 0.00 0.00 2.69
427 428 3.828786 ACGGTCAAACAAACAGTCAAAC 58.171 40.909 0.00 0.00 0.00 2.93
428 429 3.253677 ACGGTCAAACAAACAGTCAAACA 59.746 39.130 0.00 0.00 0.00 2.83
429 430 4.230657 CGGTCAAACAAACAGTCAAACAA 58.769 39.130 0.00 0.00 0.00 2.83
430 431 4.681942 CGGTCAAACAAACAGTCAAACAAA 59.318 37.500 0.00 0.00 0.00 2.83
431 432 5.387958 CGGTCAAACAAACAGTCAAACAAAC 60.388 40.000 0.00 0.00 0.00 2.93
432 433 5.387958 GGTCAAACAAACAGTCAAACAAACG 60.388 40.000 0.00 0.00 0.00 3.60
433 434 4.681942 TCAAACAAACAGTCAAACAAACGG 59.318 37.500 0.00 0.00 0.00 4.44
434 435 3.926821 ACAAACAGTCAAACAAACGGT 57.073 38.095 0.00 0.00 0.00 4.83
435 436 4.245845 ACAAACAGTCAAACAAACGGTT 57.754 36.364 0.00 0.00 42.98 4.44
448 449 0.664224 AACGGTTTGTTTAGGTGCGG 59.336 50.000 0.00 0.00 37.59 5.69
449 450 1.167781 ACGGTTTGTTTAGGTGCGGG 61.168 55.000 0.00 0.00 0.00 6.13
450 451 1.167781 CGGTTTGTTTAGGTGCGGGT 61.168 55.000 0.00 0.00 0.00 5.28
451 452 1.034356 GGTTTGTTTAGGTGCGGGTT 58.966 50.000 0.00 0.00 0.00 4.11
452 453 1.001048 GGTTTGTTTAGGTGCGGGTTC 60.001 52.381 0.00 0.00 0.00 3.62
453 454 0.945813 TTTGTTTAGGTGCGGGTTCG 59.054 50.000 0.00 0.00 39.81 3.95
454 455 0.106335 TTGTTTAGGTGCGGGTTCGA 59.894 50.000 0.00 0.00 39.00 3.71
455 456 0.600782 TGTTTAGGTGCGGGTTCGAC 60.601 55.000 0.00 0.00 39.00 4.20
456 457 1.004679 TTTAGGTGCGGGTTCGACC 60.005 57.895 0.00 0.00 39.00 4.79
457 458 1.474332 TTTAGGTGCGGGTTCGACCT 61.474 55.000 0.00 0.00 43.70 3.85
459 460 4.309950 GGTGCGGGTTCGACCTGT 62.310 66.667 12.54 0.00 46.46 4.00
460 461 2.737376 GTGCGGGTTCGACCTGTC 60.737 66.667 12.54 7.24 46.46 3.51
461 462 3.228017 TGCGGGTTCGACCTGTCA 61.228 61.111 12.54 9.10 46.46 3.58
462 463 2.264794 GCGGGTTCGACCTGTCAT 59.735 61.111 12.54 0.00 46.46 3.06
463 464 1.252215 TGCGGGTTCGACCTGTCATA 61.252 55.000 12.54 0.00 46.46 2.15
464 465 0.108520 GCGGGTTCGACCTGTCATAA 60.109 55.000 12.54 0.00 46.46 1.90
465 466 1.673626 GCGGGTTCGACCTGTCATAAA 60.674 52.381 12.54 0.00 46.46 1.40
466 467 1.997606 CGGGTTCGACCTGTCATAAAC 59.002 52.381 5.09 0.00 39.82 2.01
467 468 2.353323 GGGTTCGACCTGTCATAAACC 58.647 52.381 13.65 13.65 38.64 3.27
468 469 1.997606 GGTTCGACCTGTCATAAACCG 59.002 52.381 9.22 0.00 34.73 4.44
469 470 1.997606 GTTCGACCTGTCATAAACCGG 59.002 52.381 0.00 0.00 38.19 5.28
471 472 1.619827 TCGACCTGTCATAAACCGGTT 59.380 47.619 15.86 15.86 44.67 4.44
472 473 2.037511 TCGACCTGTCATAAACCGGTTT 59.962 45.455 33.42 33.42 44.67 3.27
473 474 3.257873 TCGACCTGTCATAAACCGGTTTA 59.742 43.478 35.24 35.24 44.67 2.01
474 475 3.995705 CGACCTGTCATAAACCGGTTTAA 59.004 43.478 36.33 22.44 44.67 1.52
475 476 4.632688 CGACCTGTCATAAACCGGTTTAAT 59.367 41.667 36.33 23.82 44.67 1.40
476 477 5.122711 CGACCTGTCATAAACCGGTTTAATT 59.877 40.000 36.33 22.44 44.67 1.40
477 478 6.348704 CGACCTGTCATAAACCGGTTTAATTT 60.349 38.462 36.33 21.77 44.67 1.82
478 479 7.148440 CGACCTGTCATAAACCGGTTTAATTTA 60.148 37.037 36.33 23.52 44.67 1.40
479 480 8.584063 ACCTGTCATAAACCGGTTTAATTTAT 57.416 30.769 36.33 22.03 42.29 1.40
480 481 9.027202 ACCTGTCATAAACCGGTTTAATTTATT 57.973 29.630 36.33 20.44 42.29 1.40
488 489 7.764695 AACCGGTTTAATTTATTAGCAATGC 57.235 32.000 15.86 0.00 0.00 3.56
489 490 5.974751 ACCGGTTTAATTTATTAGCAATGCG 59.025 36.000 0.00 0.00 0.00 4.73
490 491 5.974751 CCGGTTTAATTTATTAGCAATGCGT 59.025 36.000 0.00 0.00 0.00 5.24
491 492 6.075099 CCGGTTTAATTTATTAGCAATGCGTG 60.075 38.462 0.00 0.00 0.00 5.34
492 493 6.689241 CGGTTTAATTTATTAGCAATGCGTGA 59.311 34.615 0.00 0.00 0.00 4.35
493 494 7.378461 CGGTTTAATTTATTAGCAATGCGTGAT 59.622 33.333 0.00 0.00 0.00 3.06
494 495 9.030301 GGTTTAATTTATTAGCAATGCGTGATT 57.970 29.630 0.00 0.00 0.00 2.57
497 498 7.467557 AATTTATTAGCAATGCGTGATTTGG 57.532 32.000 0.00 0.00 0.00 3.28
498 499 2.937469 TTAGCAATGCGTGATTTGGG 57.063 45.000 0.00 0.00 0.00 4.12
499 500 1.832883 TAGCAATGCGTGATTTGGGT 58.167 45.000 0.00 0.00 0.00 4.51
500 501 0.968405 AGCAATGCGTGATTTGGGTT 59.032 45.000 0.00 0.00 0.00 4.11
501 502 1.344114 AGCAATGCGTGATTTGGGTTT 59.656 42.857 0.00 0.00 0.00 3.27
502 503 2.142319 GCAATGCGTGATTTGGGTTTT 58.858 42.857 0.00 0.00 0.00 2.43
503 504 2.547634 GCAATGCGTGATTTGGGTTTTT 59.452 40.909 0.00 0.00 0.00 1.94
519 520 2.622546 TTTTTGAAATAGCCGACGCC 57.377 45.000 0.00 0.00 34.57 5.68
520 521 1.524848 TTTTGAAATAGCCGACGCCA 58.475 45.000 0.00 0.00 34.57 5.69
521 522 1.524848 TTTGAAATAGCCGACGCCAA 58.475 45.000 0.00 0.00 34.57 4.52
522 523 1.745232 TTGAAATAGCCGACGCCAAT 58.255 45.000 0.00 0.00 34.57 3.16
523 524 1.745232 TGAAATAGCCGACGCCAATT 58.255 45.000 0.00 0.00 34.57 2.32
524 525 1.668751 TGAAATAGCCGACGCCAATTC 59.331 47.619 0.00 0.00 34.57 2.17
525 526 1.002792 GAAATAGCCGACGCCAATTCC 60.003 52.381 0.00 0.00 34.57 3.01
526 527 1.157870 AATAGCCGACGCCAATTCCG 61.158 55.000 0.00 0.00 34.57 4.30
527 528 2.023414 ATAGCCGACGCCAATTCCGA 62.023 55.000 2.36 0.00 34.57 4.55
528 529 2.023414 TAGCCGACGCCAATTCCGAT 62.023 55.000 2.36 0.00 34.57 4.18
529 530 1.593209 GCCGACGCCAATTCCGATA 60.593 57.895 2.36 0.00 0.00 2.92
530 531 1.557443 GCCGACGCCAATTCCGATAG 61.557 60.000 2.36 0.00 0.00 2.08
531 532 0.249322 CCGACGCCAATTCCGATAGT 60.249 55.000 2.36 0.00 0.00 2.12
532 533 1.567504 CGACGCCAATTCCGATAGTT 58.432 50.000 2.36 0.00 0.00 2.24
533 534 2.544277 CCGACGCCAATTCCGATAGTTA 60.544 50.000 2.36 0.00 0.00 2.24
534 535 3.314553 CGACGCCAATTCCGATAGTTAT 58.685 45.455 2.36 0.00 0.00 1.89
535 536 3.364023 CGACGCCAATTCCGATAGTTATC 59.636 47.826 2.36 0.00 0.00 1.75
536 537 4.304110 GACGCCAATTCCGATAGTTATCA 58.696 43.478 2.36 0.00 32.98 2.15
537 538 4.307432 ACGCCAATTCCGATAGTTATCAG 58.693 43.478 2.36 0.00 32.98 2.90
538 539 4.202223 ACGCCAATTCCGATAGTTATCAGT 60.202 41.667 2.36 0.00 32.98 3.41
539 540 4.386049 CGCCAATTCCGATAGTTATCAGTC 59.614 45.833 0.57 0.00 32.98 3.51
540 541 5.297547 GCCAATTCCGATAGTTATCAGTCA 58.702 41.667 0.57 0.00 32.98 3.41
541 542 5.934625 GCCAATTCCGATAGTTATCAGTCAT 59.065 40.000 0.57 0.00 32.98 3.06
542 543 7.097192 GCCAATTCCGATAGTTATCAGTCATA 58.903 38.462 0.57 0.00 32.98 2.15
543 544 7.602644 GCCAATTCCGATAGTTATCAGTCATAA 59.397 37.037 0.57 0.00 32.98 1.90
544 545 9.489084 CCAATTCCGATAGTTATCAGTCATAAA 57.511 33.333 0.57 0.00 32.98 1.40
585 586 7.571080 TTTTTAGAACCCTAACACGAATTGT 57.429 32.000 0.00 0.00 41.74 2.71
668 669 8.103305 ACTAAGGCTTTGTTAATTCTCAGATGA 58.897 33.333 4.45 0.00 0.00 2.92
745 749 3.855950 CCAACTAACGTTCCACGAGTATC 59.144 47.826 2.82 0.00 46.05 2.24
805 814 3.045634 CACCTACCCAGTTGATCCCATA 58.954 50.000 0.00 0.00 0.00 2.74
815 824 3.960755 AGTTGATCCCATATCAGACGTGA 59.039 43.478 0.00 0.00 37.02 4.35
841 851 4.574421 CACTTGTGTCACTGTACATTTCCA 59.426 41.667 4.27 0.00 0.00 3.53
842 852 5.239306 CACTTGTGTCACTGTACATTTCCAT 59.761 40.000 4.27 0.00 0.00 3.41
843 853 5.827797 ACTTGTGTCACTGTACATTTCCATT 59.172 36.000 4.27 0.00 0.00 3.16
844 854 6.321181 ACTTGTGTCACTGTACATTTCCATTT 59.679 34.615 4.27 0.00 0.00 2.32
845 855 6.707440 TGTGTCACTGTACATTTCCATTTT 57.293 33.333 4.27 0.00 0.00 1.82
846 856 6.734137 TGTGTCACTGTACATTTCCATTTTC 58.266 36.000 4.27 0.00 0.00 2.29
847 857 6.149633 GTGTCACTGTACATTTCCATTTTCC 58.850 40.000 0.00 0.00 0.00 3.13
893 903 5.593095 CCAAACCCTAGCTCCTTTATAAACC 59.407 44.000 0.00 0.00 0.00 3.27
894 904 5.384145 AACCCTAGCTCCTTTATAAACCC 57.616 43.478 0.00 0.00 0.00 4.11
895 905 3.720526 ACCCTAGCTCCTTTATAAACCCC 59.279 47.826 0.00 0.00 0.00 4.95
896 906 3.720002 CCCTAGCTCCTTTATAAACCCCA 59.280 47.826 0.00 0.00 0.00 4.96
899 909 3.198827 AGCTCCTTTATAAACCCCACCT 58.801 45.455 0.00 0.00 0.00 4.00
901 911 4.412528 AGCTCCTTTATAAACCCCACCTAG 59.587 45.833 0.00 0.00 0.00 3.02
907 917 1.875488 TAAACCCCACCTAGCTCCTC 58.125 55.000 0.00 0.00 0.00 3.71
908 918 0.914902 AAACCCCACCTAGCTCCTCC 60.915 60.000 0.00 0.00 0.00 4.30
918 928 2.110899 CCTAGCTCCTCCCCTCTAATCA 59.889 54.545 0.00 0.00 0.00 2.57
929 939 3.430929 CCCCTCTAATCACACTGCACTAC 60.431 52.174 0.00 0.00 0.00 2.73
964 981 2.705658 TCTCATTGTTCCACTCCACAGT 59.294 45.455 0.00 0.00 0.00 3.55
965 982 3.070018 CTCATTGTTCCACTCCACAGTC 58.930 50.000 0.00 0.00 0.00 3.51
966 983 2.154462 CATTGTTCCACTCCACAGTCC 58.846 52.381 0.00 0.00 0.00 3.85
967 984 1.208706 TTGTTCCACTCCACAGTCCA 58.791 50.000 0.00 0.00 0.00 4.02
968 985 0.468226 TGTTCCACTCCACAGTCCAC 59.532 55.000 0.00 0.00 0.00 4.02
969 986 0.468226 GTTCCACTCCACAGTCCACA 59.532 55.000 0.00 0.00 0.00 4.17
970 987 0.758734 TTCCACTCCACAGTCCACAG 59.241 55.000 0.00 0.00 0.00 3.66
1060 1077 1.713647 TGTCTCTCTCCCTCTTCCTGT 59.286 52.381 0.00 0.00 0.00 4.00
1092 1109 2.046864 CGCCTCGTCCTTCTCTCCA 61.047 63.158 0.00 0.00 0.00 3.86
1096 1113 1.999071 CTCGTCCTTCTCTCCAGCCG 61.999 65.000 0.00 0.00 0.00 5.52
1113 1130 1.810853 CGACGCACAGGCATCATCA 60.811 57.895 0.00 0.00 41.24 3.07
1209 1226 0.665068 TGCACTACAACTACACGGCG 60.665 55.000 4.80 4.80 0.00 6.46
1299 1316 2.983592 CTCAACCCCAACGGCACC 60.984 66.667 0.00 0.00 33.26 5.01
1517 1534 1.993391 CCGGGAAGGGGAGCAAGTA 60.993 63.158 0.00 0.00 35.97 2.24
1518 1535 1.345715 CCGGGAAGGGGAGCAAGTAT 61.346 60.000 0.00 0.00 35.97 2.12
1667 1692 7.312657 TCGTTACTAGGTATGCTTATATCCG 57.687 40.000 0.00 0.00 0.00 4.18
1696 1724 3.181550 CGTGTCGTTTGTTCCGTATGTAC 60.182 47.826 0.00 0.00 0.00 2.90
1709 1737 0.318022 TATGTACGTATGTGCCCGCG 60.318 55.000 0.00 0.00 0.00 6.46
1749 1785 9.868160 TCCCTCTATATATCGATGTATGAATGT 57.132 33.333 21.10 2.16 0.00 2.71
1800 1839 7.292292 TGTGAATACGTACTTGTGTAATTTGC 58.708 34.615 0.00 0.00 0.00 3.68
1827 1868 4.267357 GCGTACGCCAGATTTAAATGAA 57.733 40.909 29.51 0.00 34.56 2.57
1828 1869 4.026407 GCGTACGCCAGATTTAAATGAAC 58.974 43.478 29.51 0.00 34.56 3.18
1829 1870 4.260670 CGTACGCCAGATTTAAATGAACG 58.739 43.478 5.17 6.68 0.00 3.95
1830 1871 3.131240 ACGCCAGATTTAAATGAACGC 57.869 42.857 5.17 1.22 0.00 4.84
1831 1872 2.486203 ACGCCAGATTTAAATGAACGCA 59.514 40.909 5.17 0.00 0.00 5.24
1832 1873 3.057876 ACGCCAGATTTAAATGAACGCAA 60.058 39.130 5.17 0.00 0.00 4.85
1833 1874 4.104776 CGCCAGATTTAAATGAACGCAAT 58.895 39.130 5.17 0.00 0.00 3.56
1890 1939 2.203167 CAGATGCCTGCGCCTGAT 60.203 61.111 4.18 0.00 33.07 2.90
1960 2021 2.637872 CGGTCCATATAACCCACCAGAT 59.362 50.000 1.80 0.00 32.89 2.90
1969 2030 1.486211 ACCCACCAGATCGAACCTAG 58.514 55.000 0.00 0.00 0.00 3.02
2044 2123 2.919229 CGCTTCAAAAGGCACATCAATC 59.081 45.455 0.00 0.00 0.00 2.67
2072 2151 1.587876 CGATCAAACGATCCGCCGA 60.588 57.895 0.00 0.00 36.69 5.54
2297 2387 1.000163 TCACGAGTGCTCCAAGAAGAC 60.000 52.381 0.00 0.00 0.00 3.01
2356 2446 1.260206 CGAAGATCTCCACACGAACG 58.740 55.000 0.00 0.00 0.00 3.95
2509 2608 4.783621 TCTCCACCATGCGGCAGC 62.784 66.667 9.25 0.31 45.41 5.25
2556 2655 2.170817 GAGGGAGTTCATCACCTTACCC 59.829 54.545 0.00 0.00 36.67 3.69
2573 2678 1.012486 CCCGAACGGAAGCACTACAC 61.012 60.000 15.07 0.00 37.50 2.90
2592 2697 1.252904 CCTTCACGTTCCCGAGGGTA 61.253 60.000 8.20 0.00 37.88 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250338 GTTCTTGTCAAGTCGGGCCT 60.250 55.000 12.30 0.00 0.00 5.19
1 2 1.235281 GGTTCTTGTCAAGTCGGGCC 61.235 60.000 12.30 0.00 0.00 5.80
2 3 0.250338 AGGTTCTTGTCAAGTCGGGC 60.250 55.000 12.30 0.55 0.00 6.13
3 4 1.344763 AGAGGTTCTTGTCAAGTCGGG 59.655 52.381 12.30 0.00 0.00 5.14
4 5 2.297597 AGAGAGGTTCTTGTCAAGTCGG 59.702 50.000 12.30 0.00 29.61 4.79
5 6 3.004839 TGAGAGAGGTTCTTGTCAAGTCG 59.995 47.826 12.30 0.00 35.87 4.18
6 7 4.202161 TGTGAGAGAGGTTCTTGTCAAGTC 60.202 45.833 12.30 7.12 35.87 3.01
7 8 3.706594 TGTGAGAGAGGTTCTTGTCAAGT 59.293 43.478 12.30 0.00 35.87 3.16
8 9 4.305769 CTGTGAGAGAGGTTCTTGTCAAG 58.694 47.826 6.21 6.21 35.87 3.02
9 10 3.493350 GCTGTGAGAGAGGTTCTTGTCAA 60.493 47.826 0.00 0.00 35.87 3.18
10 11 2.036475 GCTGTGAGAGAGGTTCTTGTCA 59.964 50.000 0.00 0.00 35.87 3.58
11 12 2.611722 GGCTGTGAGAGAGGTTCTTGTC 60.612 54.545 0.00 0.00 35.87 3.18
12 13 1.346068 GGCTGTGAGAGAGGTTCTTGT 59.654 52.381 0.00 0.00 35.87 3.16
13 14 1.622811 AGGCTGTGAGAGAGGTTCTTG 59.377 52.381 0.00 0.00 35.87 3.02
14 15 2.022718 AGGCTGTGAGAGAGGTTCTT 57.977 50.000 0.00 0.00 35.87 2.52
15 16 2.022718 AAGGCTGTGAGAGAGGTTCT 57.977 50.000 0.00 0.00 39.43 3.01
16 17 2.037772 TCAAAGGCTGTGAGAGAGGTTC 59.962 50.000 2.41 0.00 0.00 3.62
17 18 2.050144 TCAAAGGCTGTGAGAGAGGTT 58.950 47.619 2.41 0.00 0.00 3.50
18 19 1.346068 GTCAAAGGCTGTGAGAGAGGT 59.654 52.381 7.86 0.00 0.00 3.85
19 20 1.345741 TGTCAAAGGCTGTGAGAGAGG 59.654 52.381 7.86 0.00 0.00 3.69
20 21 2.827800 TGTCAAAGGCTGTGAGAGAG 57.172 50.000 7.86 0.00 0.00 3.20
21 22 3.206150 GTTTGTCAAAGGCTGTGAGAGA 58.794 45.455 7.86 0.00 0.00 3.10
22 23 2.291741 GGTTTGTCAAAGGCTGTGAGAG 59.708 50.000 7.86 0.00 0.00 3.20
23 24 2.092429 AGGTTTGTCAAAGGCTGTGAGA 60.092 45.455 7.86 3.50 0.00 3.27
24 25 2.301346 AGGTTTGTCAAAGGCTGTGAG 58.699 47.619 7.86 0.00 0.00 3.51
25 26 2.426738 CAAGGTTTGTCAAAGGCTGTGA 59.573 45.455 2.41 2.41 0.00 3.58
26 27 2.166254 ACAAGGTTTGTCAAAGGCTGTG 59.834 45.455 0.00 0.00 40.56 3.66
27 28 2.456577 ACAAGGTTTGTCAAAGGCTGT 58.543 42.857 0.00 0.00 40.56 4.40
38 39 2.171003 GGATGGAAGGGACAAGGTTTG 58.829 52.381 0.00 0.00 0.00 2.93
39 40 1.786441 TGGATGGAAGGGACAAGGTTT 59.214 47.619 0.00 0.00 0.00 3.27
40 41 1.075536 GTGGATGGAAGGGACAAGGTT 59.924 52.381 0.00 0.00 0.00 3.50
41 42 0.698818 GTGGATGGAAGGGACAAGGT 59.301 55.000 0.00 0.00 0.00 3.50
42 43 0.995024 AGTGGATGGAAGGGACAAGG 59.005 55.000 0.00 0.00 0.00 3.61
43 44 3.610911 GTTAGTGGATGGAAGGGACAAG 58.389 50.000 0.00 0.00 0.00 3.16
44 45 2.307686 GGTTAGTGGATGGAAGGGACAA 59.692 50.000 0.00 0.00 0.00 3.18
45 46 1.913419 GGTTAGTGGATGGAAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
46 47 2.197465 AGGTTAGTGGATGGAAGGGAC 58.803 52.381 0.00 0.00 0.00 4.46
47 48 2.661176 AGGTTAGTGGATGGAAGGGA 57.339 50.000 0.00 0.00 0.00 4.20
48 49 3.621558 GAAAGGTTAGTGGATGGAAGGG 58.378 50.000 0.00 0.00 0.00 3.95
49 50 3.267031 AGGAAAGGTTAGTGGATGGAAGG 59.733 47.826 0.00 0.00 0.00 3.46
50 51 4.576330 AGGAAAGGTTAGTGGATGGAAG 57.424 45.455 0.00 0.00 0.00 3.46
51 52 5.333566 AAAGGAAAGGTTAGTGGATGGAA 57.666 39.130 0.00 0.00 0.00 3.53
52 53 5.076873 CAAAAGGAAAGGTTAGTGGATGGA 58.923 41.667 0.00 0.00 0.00 3.41
53 54 5.076873 TCAAAAGGAAAGGTTAGTGGATGG 58.923 41.667 0.00 0.00 0.00 3.51
54 55 5.183904 CCTCAAAAGGAAAGGTTAGTGGATG 59.816 44.000 0.00 0.00 46.67 3.51
55 56 5.325239 CCTCAAAAGGAAAGGTTAGTGGAT 58.675 41.667 0.00 0.00 46.67 3.41
56 57 4.725490 CCTCAAAAGGAAAGGTTAGTGGA 58.275 43.478 0.00 0.00 46.67 4.02
69 70 9.793252 CAAATATGTAACTGAATCCTCAAAAGG 57.207 33.333 0.00 0.00 44.89 3.11
74 75 9.739276 ACTTTCAAATATGTAACTGAATCCTCA 57.261 29.630 0.00 0.00 0.00 3.86
93 94 9.527157 TGGAAGATCAAAATATGGTACTTTCAA 57.473 29.630 0.00 0.00 0.00 2.69
94 95 9.527157 TTGGAAGATCAAAATATGGTACTTTCA 57.473 29.630 0.00 0.00 0.00 2.69
95 96 9.788960 GTTGGAAGATCAAAATATGGTACTTTC 57.211 33.333 0.00 0.00 0.00 2.62
96 97 9.533831 AGTTGGAAGATCAAAATATGGTACTTT 57.466 29.630 0.00 0.00 0.00 2.66
101 102 9.479549 ACATTAGTTGGAAGATCAAAATATGGT 57.520 29.630 0.00 0.00 0.00 3.55
129 130 1.218196 TGAGAGATACCTGGGTCTCCC 59.782 57.143 20.85 13.84 45.71 4.30
130 131 2.091555 AGTGAGAGATACCTGGGTCTCC 60.092 54.545 20.85 15.12 41.36 3.71
131 132 3.219281 GAGTGAGAGATACCTGGGTCTC 58.781 54.545 18.32 18.32 40.88 3.36
132 133 2.583101 TGAGTGAGAGATACCTGGGTCT 59.417 50.000 0.00 0.59 0.00 3.85
133 134 3.019799 TGAGTGAGAGATACCTGGGTC 57.980 52.381 0.00 0.00 0.00 4.46
134 135 3.474798 TTGAGTGAGAGATACCTGGGT 57.525 47.619 0.00 0.00 0.00 4.51
135 136 3.431486 GCTTTGAGTGAGAGATACCTGGG 60.431 52.174 0.00 0.00 0.00 4.45
136 137 3.450457 AGCTTTGAGTGAGAGATACCTGG 59.550 47.826 0.00 0.00 0.00 4.45
137 138 4.734398 AGCTTTGAGTGAGAGATACCTG 57.266 45.455 0.00 0.00 0.00 4.00
138 139 4.142271 CGAAGCTTTGAGTGAGAGATACCT 60.142 45.833 8.08 0.00 0.00 3.08
139 140 4.109050 CGAAGCTTTGAGTGAGAGATACC 58.891 47.826 8.08 0.00 0.00 2.73
140 141 4.109050 CCGAAGCTTTGAGTGAGAGATAC 58.891 47.826 15.72 0.00 0.00 2.24
141 142 4.017126 TCCGAAGCTTTGAGTGAGAGATA 58.983 43.478 15.72 0.00 0.00 1.98
142 143 2.828520 TCCGAAGCTTTGAGTGAGAGAT 59.171 45.455 15.72 0.00 0.00 2.75
143 144 2.029828 GTCCGAAGCTTTGAGTGAGAGA 60.030 50.000 15.72 0.00 0.00 3.10
144 145 2.029470 AGTCCGAAGCTTTGAGTGAGAG 60.029 50.000 15.72 0.00 0.00 3.20
145 146 1.964223 AGTCCGAAGCTTTGAGTGAGA 59.036 47.619 15.72 0.36 0.00 3.27
146 147 2.064762 CAGTCCGAAGCTTTGAGTGAG 58.935 52.381 21.44 5.12 32.39 3.51
147 148 1.873903 GCAGTCCGAAGCTTTGAGTGA 60.874 52.381 26.53 11.41 32.39 3.41
148 149 0.514691 GCAGTCCGAAGCTTTGAGTG 59.485 55.000 21.57 21.57 33.54 3.51
149 150 0.106708 TGCAGTCCGAAGCTTTGAGT 59.893 50.000 15.72 8.23 0.00 3.41
150 151 0.514691 GTGCAGTCCGAAGCTTTGAG 59.485 55.000 15.72 5.62 0.00 3.02
151 152 0.179059 TGTGCAGTCCGAAGCTTTGA 60.179 50.000 15.72 5.40 0.00 2.69
152 153 0.040958 GTGTGCAGTCCGAAGCTTTG 60.041 55.000 6.73 6.73 0.00 2.77
153 154 1.166531 GGTGTGCAGTCCGAAGCTTT 61.167 55.000 0.00 0.00 0.00 3.51
154 155 1.598130 GGTGTGCAGTCCGAAGCTT 60.598 57.895 0.00 0.00 0.00 3.74
155 156 2.031163 GGTGTGCAGTCCGAAGCT 59.969 61.111 0.00 0.00 0.00 3.74
156 157 1.845809 CTTGGTGTGCAGTCCGAAGC 61.846 60.000 0.00 0.00 0.00 3.86
157 158 0.532862 ACTTGGTGTGCAGTCCGAAG 60.533 55.000 0.00 2.64 0.00 3.79
158 159 0.813610 CACTTGGTGTGCAGTCCGAA 60.814 55.000 0.00 0.00 40.06 4.30
159 160 1.227527 CACTTGGTGTGCAGTCCGA 60.228 57.895 0.00 0.00 40.06 4.55
160 161 3.333414 CACTTGGTGTGCAGTCCG 58.667 61.111 0.00 0.00 40.06 4.79
172 173 1.002468 CGGAGCTCAAAACCACACTTG 60.002 52.381 17.19 0.00 0.00 3.16
173 174 1.308998 CGGAGCTCAAAACCACACTT 58.691 50.000 17.19 0.00 0.00 3.16
174 175 0.180406 ACGGAGCTCAAAACCACACT 59.820 50.000 17.19 0.00 0.00 3.55
175 176 1.021968 AACGGAGCTCAAAACCACAC 58.978 50.000 17.19 0.00 0.00 3.82
176 177 1.757682 AAACGGAGCTCAAAACCACA 58.242 45.000 17.19 0.00 0.00 4.17
177 178 2.357952 AGAAAACGGAGCTCAAAACCAC 59.642 45.455 17.19 1.13 0.00 4.16
178 179 2.650322 AGAAAACGGAGCTCAAAACCA 58.350 42.857 17.19 0.00 0.00 3.67
179 180 3.315470 AGAAGAAAACGGAGCTCAAAACC 59.685 43.478 17.19 0.00 0.00 3.27
180 181 4.528504 GAGAAGAAAACGGAGCTCAAAAC 58.471 43.478 17.19 0.00 0.00 2.43
181 182 3.564225 GGAGAAGAAAACGGAGCTCAAAA 59.436 43.478 17.19 0.00 0.00 2.44
182 183 3.139077 GGAGAAGAAAACGGAGCTCAAA 58.861 45.455 17.19 0.00 0.00 2.69
183 184 2.368875 AGGAGAAGAAAACGGAGCTCAA 59.631 45.455 17.19 0.00 0.00 3.02
184 185 1.971357 AGGAGAAGAAAACGGAGCTCA 59.029 47.619 17.19 0.00 0.00 4.26
185 186 2.232696 AGAGGAGAAGAAAACGGAGCTC 59.767 50.000 4.71 4.71 0.00 4.09
186 187 2.252714 AGAGGAGAAGAAAACGGAGCT 58.747 47.619 0.00 0.00 0.00 4.09
187 188 2.739379 CAAGAGGAGAAGAAAACGGAGC 59.261 50.000 0.00 0.00 0.00 4.70
188 189 3.991121 GTCAAGAGGAGAAGAAAACGGAG 59.009 47.826 0.00 0.00 0.00 4.63
189 190 3.386726 TGTCAAGAGGAGAAGAAAACGGA 59.613 43.478 0.00 0.00 0.00 4.69
190 191 3.728845 TGTCAAGAGGAGAAGAAAACGG 58.271 45.455 0.00 0.00 0.00 4.44
191 192 4.024809 GGTTGTCAAGAGGAGAAGAAAACG 60.025 45.833 0.00 0.00 30.70 3.60
192 193 4.276183 GGGTTGTCAAGAGGAGAAGAAAAC 59.724 45.833 0.00 0.00 28.01 2.43
193 194 4.166144 AGGGTTGTCAAGAGGAGAAGAAAA 59.834 41.667 0.00 0.00 28.01 2.29
194 195 3.716872 AGGGTTGTCAAGAGGAGAAGAAA 59.283 43.478 0.00 0.00 28.01 2.52
195 196 3.318313 AGGGTTGTCAAGAGGAGAAGAA 58.682 45.455 0.00 0.00 28.01 2.52
196 197 2.977808 AGGGTTGTCAAGAGGAGAAGA 58.022 47.619 0.00 0.00 28.01 2.87
197 198 3.558109 GGAAGGGTTGTCAAGAGGAGAAG 60.558 52.174 0.00 0.00 28.01 2.85
198 199 2.372172 GGAAGGGTTGTCAAGAGGAGAA 59.628 50.000 0.00 0.00 0.00 2.87
199 200 1.978580 GGAAGGGTTGTCAAGAGGAGA 59.021 52.381 0.00 0.00 0.00 3.71
200 201 1.003696 GGGAAGGGTTGTCAAGAGGAG 59.996 57.143 0.00 0.00 0.00 3.69
201 202 1.064825 GGGAAGGGTTGTCAAGAGGA 58.935 55.000 0.00 0.00 0.00 3.71
202 203 0.321653 CGGGAAGGGTTGTCAAGAGG 60.322 60.000 0.00 0.00 0.00 3.69
203 204 0.685097 TCGGGAAGGGTTGTCAAGAG 59.315 55.000 0.00 0.00 0.00 2.85
204 205 1.071699 CTTCGGGAAGGGTTGTCAAGA 59.928 52.381 0.38 0.00 34.87 3.02
205 206 1.071699 TCTTCGGGAAGGGTTGTCAAG 59.928 52.381 8.46 0.00 38.88 3.02
206 207 1.133363 TCTTCGGGAAGGGTTGTCAA 58.867 50.000 8.46 0.00 38.88 3.18
207 208 1.071699 CTTCTTCGGGAAGGGTTGTCA 59.928 52.381 8.46 0.00 45.55 3.58
208 209 1.809684 CTTCTTCGGGAAGGGTTGTC 58.190 55.000 8.46 0.00 45.55 3.18
216 217 4.672587 AATCATCGATCTTCTTCGGGAA 57.327 40.909 0.00 0.00 39.56 3.97
217 218 4.672587 AAATCATCGATCTTCTTCGGGA 57.327 40.909 0.00 0.00 39.56 5.14
218 219 5.065218 ACAAAAATCATCGATCTTCTTCGGG 59.935 40.000 0.00 0.00 39.56 5.14
219 220 6.111768 ACAAAAATCATCGATCTTCTTCGG 57.888 37.500 0.00 0.00 39.56 4.30
220 221 7.010552 ACCTACAAAAATCATCGATCTTCTTCG 59.989 37.037 0.00 0.00 40.46 3.79
221 222 8.202745 ACCTACAAAAATCATCGATCTTCTTC 57.797 34.615 0.00 0.00 0.00 2.87
222 223 8.454106 CAACCTACAAAAATCATCGATCTTCTT 58.546 33.333 0.00 0.00 0.00 2.52
223 224 7.824289 TCAACCTACAAAAATCATCGATCTTCT 59.176 33.333 0.00 0.00 0.00 2.85
224 225 7.905493 GTCAACCTACAAAAATCATCGATCTTC 59.095 37.037 0.00 0.00 0.00 2.87
225 226 7.607991 AGTCAACCTACAAAAATCATCGATCTT 59.392 33.333 0.00 0.00 0.00 2.40
226 227 7.106239 AGTCAACCTACAAAAATCATCGATCT 58.894 34.615 0.00 0.00 0.00 2.75
227 228 7.308782 AGTCAACCTACAAAAATCATCGATC 57.691 36.000 0.00 0.00 0.00 3.69
228 229 6.036083 CGAGTCAACCTACAAAAATCATCGAT 59.964 38.462 0.00 0.00 0.00 3.59
229 230 5.347635 CGAGTCAACCTACAAAAATCATCGA 59.652 40.000 0.00 0.00 0.00 3.59
230 231 5.347635 TCGAGTCAACCTACAAAAATCATCG 59.652 40.000 0.00 0.00 0.00 3.84
231 232 6.721571 TCGAGTCAACCTACAAAAATCATC 57.278 37.500 0.00 0.00 0.00 2.92
232 233 6.655003 ACATCGAGTCAACCTACAAAAATCAT 59.345 34.615 0.00 0.00 0.00 2.45
233 234 5.995282 ACATCGAGTCAACCTACAAAAATCA 59.005 36.000 0.00 0.00 0.00 2.57
234 235 6.481954 ACATCGAGTCAACCTACAAAAATC 57.518 37.500 0.00 0.00 0.00 2.17
235 236 6.481954 GACATCGAGTCAACCTACAAAAAT 57.518 37.500 9.30 0.00 46.77 1.82
236 237 5.917541 GACATCGAGTCAACCTACAAAAA 57.082 39.130 9.30 0.00 46.77 1.94
248 249 1.335496 GTAGCCTCTGGACATCGAGTC 59.665 57.143 6.50 6.50 46.83 3.36
249 250 1.064314 AGTAGCCTCTGGACATCGAGT 60.064 52.381 0.00 0.00 0.00 4.18
250 251 1.686355 AGTAGCCTCTGGACATCGAG 58.314 55.000 0.00 0.00 0.00 4.04
251 252 2.025155 GAAGTAGCCTCTGGACATCGA 58.975 52.381 0.00 0.00 0.00 3.59
252 253 2.028130 AGAAGTAGCCTCTGGACATCG 58.972 52.381 0.00 0.00 0.00 3.84
253 254 5.799827 ATAAGAAGTAGCCTCTGGACATC 57.200 43.478 0.00 0.00 0.00 3.06
254 255 5.686124 GCAATAAGAAGTAGCCTCTGGACAT 60.686 44.000 0.00 0.00 0.00 3.06
255 256 4.383118 GCAATAAGAAGTAGCCTCTGGACA 60.383 45.833 0.00 0.00 0.00 4.02
256 257 4.123506 GCAATAAGAAGTAGCCTCTGGAC 58.876 47.826 0.00 0.00 0.00 4.02
257 258 3.181475 CGCAATAAGAAGTAGCCTCTGGA 60.181 47.826 0.00 0.00 0.00 3.86
258 259 3.126831 CGCAATAAGAAGTAGCCTCTGG 58.873 50.000 0.00 0.00 0.00 3.86
259 260 2.541762 GCGCAATAAGAAGTAGCCTCTG 59.458 50.000 0.30 0.00 0.00 3.35
260 261 2.432510 AGCGCAATAAGAAGTAGCCTCT 59.567 45.455 11.47 0.00 0.00 3.69
261 262 2.827652 AGCGCAATAAGAAGTAGCCTC 58.172 47.619 11.47 0.00 0.00 4.70
262 263 2.990066 AGCGCAATAAGAAGTAGCCT 57.010 45.000 11.47 0.00 0.00 4.58
263 264 4.369182 TCTTAGCGCAATAAGAAGTAGCC 58.631 43.478 11.47 0.00 38.52 3.93
264 265 7.009723 GGATATCTTAGCGCAATAAGAAGTAGC 59.990 40.741 19.31 12.43 43.21 3.58
265 266 8.247562 AGGATATCTTAGCGCAATAAGAAGTAG 58.752 37.037 19.31 0.00 43.21 2.57
266 267 8.123639 AGGATATCTTAGCGCAATAAGAAGTA 57.876 34.615 19.31 11.03 43.21 2.24
267 268 6.998802 AGGATATCTTAGCGCAATAAGAAGT 58.001 36.000 19.31 12.54 43.21 3.01
268 269 7.600375 TCAAGGATATCTTAGCGCAATAAGAAG 59.400 37.037 19.31 8.87 43.21 2.85
269 270 7.441836 TCAAGGATATCTTAGCGCAATAAGAA 58.558 34.615 19.31 11.34 43.21 2.52
270 271 6.993079 TCAAGGATATCTTAGCGCAATAAGA 58.007 36.000 18.15 18.15 43.89 2.10
271 272 7.093354 TCTCAAGGATATCTTAGCGCAATAAG 58.907 38.462 11.47 10.27 33.68 1.73
272 273 6.993079 TCTCAAGGATATCTTAGCGCAATAA 58.007 36.000 11.47 0.00 33.68 1.40
273 274 6.590234 TCTCAAGGATATCTTAGCGCAATA 57.410 37.500 11.47 1.99 33.68 1.90
274 275 5.474578 TCTCAAGGATATCTTAGCGCAAT 57.525 39.130 11.47 0.00 33.68 3.56
275 276 4.797604 GCTCTCAAGGATATCTTAGCGCAA 60.798 45.833 11.47 0.50 33.68 4.85
276 277 3.305676 GCTCTCAAGGATATCTTAGCGCA 60.306 47.826 11.47 0.00 33.68 6.09
277 278 3.249917 GCTCTCAAGGATATCTTAGCGC 58.750 50.000 0.00 0.00 33.68 5.92
278 279 3.509575 AGGCTCTCAAGGATATCTTAGCG 59.490 47.826 2.05 0.00 36.13 4.26
279 280 4.081697 GGAGGCTCTCAAGGATATCTTAGC 60.082 50.000 15.23 0.83 35.11 3.09
280 281 5.083122 TGGAGGCTCTCAAGGATATCTTAG 58.917 45.833 15.23 0.00 33.68 2.18
281 282 5.079998 TGGAGGCTCTCAAGGATATCTTA 57.920 43.478 15.23 0.00 33.68 2.10
282 283 3.933886 TGGAGGCTCTCAAGGATATCTT 58.066 45.455 15.23 0.00 35.79 2.40
283 284 3.627041 TGGAGGCTCTCAAGGATATCT 57.373 47.619 15.23 0.00 31.08 1.98
284 285 6.383726 AGAATATGGAGGCTCTCAAGGATATC 59.616 42.308 15.23 0.00 31.08 1.63
285 286 6.270755 AGAATATGGAGGCTCTCAAGGATAT 58.729 40.000 15.23 3.34 31.08 1.63
286 287 5.659503 AGAATATGGAGGCTCTCAAGGATA 58.340 41.667 15.23 1.16 31.08 2.59
287 288 4.501433 AGAATATGGAGGCTCTCAAGGAT 58.499 43.478 15.23 4.07 31.08 3.24
288 289 3.900601 GAGAATATGGAGGCTCTCAAGGA 59.099 47.826 15.23 1.99 35.43 3.36
289 290 3.903090 AGAGAATATGGAGGCTCTCAAGG 59.097 47.826 15.23 0.00 37.39 3.61
290 291 5.549742 AAGAGAATATGGAGGCTCTCAAG 57.450 43.478 15.23 0.00 36.76 3.02
291 292 5.965033 AAAGAGAATATGGAGGCTCTCAA 57.035 39.130 15.23 0.82 36.76 3.02
292 293 6.139671 ACTAAAGAGAATATGGAGGCTCTCA 58.860 40.000 15.23 11.10 36.76 3.27
293 294 6.295067 GGACTAAAGAGAATATGGAGGCTCTC 60.295 46.154 15.23 3.40 36.76 3.20
294 295 5.542251 GGACTAAAGAGAATATGGAGGCTCT 59.458 44.000 15.23 0.00 39.27 4.09
295 296 5.279758 GGGACTAAAGAGAATATGGAGGCTC 60.280 48.000 5.78 5.78 0.00 4.70
296 297 4.595350 GGGACTAAAGAGAATATGGAGGCT 59.405 45.833 0.00 0.00 0.00 4.58
297 298 4.263112 GGGGACTAAAGAGAATATGGAGGC 60.263 50.000 0.00 0.00 0.00 4.70
298 299 5.158889 AGGGGACTAAAGAGAATATGGAGG 58.841 45.833 0.00 0.00 40.61 4.30
299 300 5.841237 TGAGGGGACTAAAGAGAATATGGAG 59.159 44.000 0.00 0.00 44.43 3.86
300 301 5.788430 TGAGGGGACTAAAGAGAATATGGA 58.212 41.667 0.00 0.00 44.43 3.41
301 302 6.500589 TTGAGGGGACTAAAGAGAATATGG 57.499 41.667 0.00 0.00 44.43 2.74
311 312 5.640158 TTGTCTTTCTTGAGGGGACTAAA 57.360 39.130 0.00 0.00 44.43 1.85
312 313 5.843019 ATTGTCTTTCTTGAGGGGACTAA 57.157 39.130 0.00 0.00 44.43 2.24
313 314 6.023603 AGTATTGTCTTTCTTGAGGGGACTA 58.976 40.000 0.00 0.00 44.43 2.59
314 315 7.661557 ACAGTATTGTCTTTCTTGAGGGGACT 61.662 42.308 0.00 0.00 36.45 3.85
315 316 4.938226 CAGTATTGTCTTTCTTGAGGGGAC 59.062 45.833 0.00 0.00 0.00 4.46
316 317 4.597507 ACAGTATTGTCTTTCTTGAGGGGA 59.402 41.667 0.00 0.00 29.46 4.81
317 318 4.911390 ACAGTATTGTCTTTCTTGAGGGG 58.089 43.478 0.00 0.00 29.46 4.79
330 331 3.935203 CTCTTTGCCGATGACAGTATTGT 59.065 43.478 0.00 0.00 41.18 2.71
331 332 3.310774 CCTCTTTGCCGATGACAGTATTG 59.689 47.826 0.00 0.00 0.00 1.90
332 333 3.197766 TCCTCTTTGCCGATGACAGTATT 59.802 43.478 0.00 0.00 0.00 1.89
333 334 2.766263 TCCTCTTTGCCGATGACAGTAT 59.234 45.455 0.00 0.00 0.00 2.12
334 335 2.166459 CTCCTCTTTGCCGATGACAGTA 59.834 50.000 0.00 0.00 0.00 2.74
335 336 0.976641 TCCTCTTTGCCGATGACAGT 59.023 50.000 0.00 0.00 0.00 3.55
336 337 1.649664 CTCCTCTTTGCCGATGACAG 58.350 55.000 0.00 0.00 0.00 3.51
337 338 0.250234 CCTCCTCTTTGCCGATGACA 59.750 55.000 0.00 0.00 0.00 3.58
338 339 0.250513 ACCTCCTCTTTGCCGATGAC 59.749 55.000 0.00 0.00 0.00 3.06
339 340 0.250234 CACCTCCTCTTTGCCGATGA 59.750 55.000 0.00 0.00 0.00 2.92
340 341 0.036010 ACACCTCCTCTTTGCCGATG 60.036 55.000 0.00 0.00 0.00 3.84
341 342 0.036010 CACACCTCCTCTTTGCCGAT 60.036 55.000 0.00 0.00 0.00 4.18
342 343 1.371183 CACACCTCCTCTTTGCCGA 59.629 57.895 0.00 0.00 0.00 5.54
343 344 0.320374 TACACACCTCCTCTTTGCCG 59.680 55.000 0.00 0.00 0.00 5.69
344 345 2.152016 GTTACACACCTCCTCTTTGCC 58.848 52.381 0.00 0.00 0.00 4.52
345 346 2.846193 TGTTACACACCTCCTCTTTGC 58.154 47.619 0.00 0.00 0.00 3.68
346 347 4.641396 TCATGTTACACACCTCCTCTTTG 58.359 43.478 0.00 0.00 0.00 2.77
347 348 4.263068 CCTCATGTTACACACCTCCTCTTT 60.263 45.833 0.00 0.00 0.00 2.52
348 349 3.261897 CCTCATGTTACACACCTCCTCTT 59.738 47.826 0.00 0.00 0.00 2.85
349 350 2.834549 CCTCATGTTACACACCTCCTCT 59.165 50.000 0.00 0.00 0.00 3.69
350 351 2.093447 CCCTCATGTTACACACCTCCTC 60.093 54.545 0.00 0.00 0.00 3.71
351 352 1.909302 CCCTCATGTTACACACCTCCT 59.091 52.381 0.00 0.00 0.00 3.69
352 353 1.679032 GCCCTCATGTTACACACCTCC 60.679 57.143 0.00 0.00 0.00 4.30
353 354 1.279271 AGCCCTCATGTTACACACCTC 59.721 52.381 0.00 0.00 0.00 3.85
354 355 1.362224 AGCCCTCATGTTACACACCT 58.638 50.000 0.00 0.00 0.00 4.00
355 356 2.236395 ACTAGCCCTCATGTTACACACC 59.764 50.000 0.00 0.00 0.00 4.16
356 357 3.262420 CACTAGCCCTCATGTTACACAC 58.738 50.000 0.00 0.00 0.00 3.82
357 358 2.354704 GCACTAGCCCTCATGTTACACA 60.355 50.000 0.00 0.00 33.58 3.72
358 359 2.280628 GCACTAGCCCTCATGTTACAC 58.719 52.381 0.00 0.00 33.58 2.90
359 360 2.691409 GCACTAGCCCTCATGTTACA 57.309 50.000 0.00 0.00 33.58 2.41
371 372 2.031870 CCTTATTTTGGGGGCACTAGC 58.968 52.381 0.00 0.00 41.10 3.42
372 373 3.023832 CACCTTATTTTGGGGGCACTAG 58.976 50.000 0.00 0.00 0.00 2.57
373 374 2.650322 TCACCTTATTTTGGGGGCACTA 59.350 45.455 0.00 0.00 0.00 2.74
374 375 1.431243 TCACCTTATTTTGGGGGCACT 59.569 47.619 0.00 0.00 0.00 4.40
375 376 1.931635 TCACCTTATTTTGGGGGCAC 58.068 50.000 0.00 0.00 0.00 5.01
376 377 2.252714 GTTCACCTTATTTTGGGGGCA 58.747 47.619 0.00 0.00 0.00 5.36
377 378 2.252714 TGTTCACCTTATTTTGGGGGC 58.747 47.619 0.00 0.00 0.00 5.80
378 379 5.497464 AAATGTTCACCTTATTTTGGGGG 57.503 39.130 0.00 0.00 0.00 5.40
379 380 6.799926 CAAAATGTTCACCTTATTTTGGGG 57.200 37.500 11.71 0.00 43.14 4.96
383 384 9.036671 CCGTTAACAAAATGTTCACCTTATTTT 57.963 29.630 6.39 0.00 40.22 1.82
384 385 8.198778 ACCGTTAACAAAATGTTCACCTTATTT 58.801 29.630 6.39 0.00 40.22 1.40
385 386 7.718525 ACCGTTAACAAAATGTTCACCTTATT 58.281 30.769 6.39 0.00 40.22 1.40
386 387 7.013464 TGACCGTTAACAAAATGTTCACCTTAT 59.987 33.333 6.39 0.00 40.22 1.73
387 388 6.318144 TGACCGTTAACAAAATGTTCACCTTA 59.682 34.615 6.39 0.00 40.22 2.69
388 389 5.125739 TGACCGTTAACAAAATGTTCACCTT 59.874 36.000 6.39 0.00 40.22 3.50
389 390 4.641094 TGACCGTTAACAAAATGTTCACCT 59.359 37.500 6.39 0.00 40.22 4.00
390 391 4.922719 TGACCGTTAACAAAATGTTCACC 58.077 39.130 6.39 0.00 40.22 4.02
391 392 6.308282 TGTTTGACCGTTAACAAAATGTTCAC 59.692 34.615 6.39 0.00 40.22 3.18
392 393 6.387465 TGTTTGACCGTTAACAAAATGTTCA 58.613 32.000 6.39 0.00 40.22 3.18
393 394 6.872670 TGTTTGACCGTTAACAAAATGTTC 57.127 33.333 6.39 0.00 40.22 3.18
394 395 7.653767 TTTGTTTGACCGTTAACAAAATGTT 57.346 28.000 16.82 0.99 45.82 2.71
399 400 5.770417 ACTGTTTGTTTGACCGTTAACAAA 58.230 33.333 15.87 15.87 46.30 2.83
400 401 5.048921 TGACTGTTTGTTTGACCGTTAACAA 60.049 36.000 6.39 8.15 41.16 2.83
401 402 4.454847 TGACTGTTTGTTTGACCGTTAACA 59.545 37.500 6.39 0.00 32.76 2.41
402 403 4.972201 TGACTGTTTGTTTGACCGTTAAC 58.028 39.130 0.00 0.00 0.00 2.01
403 404 5.624344 TTGACTGTTTGTTTGACCGTTAA 57.376 34.783 0.00 0.00 0.00 2.01
404 405 5.048921 TGTTTGACTGTTTGTTTGACCGTTA 60.049 36.000 0.00 0.00 0.00 3.18
405 406 4.231439 GTTTGACTGTTTGTTTGACCGTT 58.769 39.130 0.00 0.00 0.00 4.44
406 407 3.253677 TGTTTGACTGTTTGTTTGACCGT 59.746 39.130 0.00 0.00 0.00 4.83
407 408 3.827625 TGTTTGACTGTTTGTTTGACCG 58.172 40.909 0.00 0.00 0.00 4.79
408 409 5.387958 CGTTTGTTTGACTGTTTGTTTGACC 60.388 40.000 0.00 0.00 0.00 4.02
409 410 5.387958 CCGTTTGTTTGACTGTTTGTTTGAC 60.388 40.000 0.00 0.00 0.00 3.18
410 411 4.681942 CCGTTTGTTTGACTGTTTGTTTGA 59.318 37.500 0.00 0.00 0.00 2.69
411 412 4.446051 ACCGTTTGTTTGACTGTTTGTTTG 59.554 37.500 0.00 0.00 0.00 2.93
412 413 4.623002 ACCGTTTGTTTGACTGTTTGTTT 58.377 34.783 0.00 0.00 0.00 2.83
413 414 4.245845 ACCGTTTGTTTGACTGTTTGTT 57.754 36.364 0.00 0.00 0.00 2.83
414 415 3.926821 ACCGTTTGTTTGACTGTTTGT 57.073 38.095 0.00 0.00 0.00 2.83
429 430 0.664224 CCGCACCTAAACAAACCGTT 59.336 50.000 0.00 0.00 40.50 4.44
430 431 1.167781 CCCGCACCTAAACAAACCGT 61.168 55.000 0.00 0.00 0.00 4.83
431 432 1.167781 ACCCGCACCTAAACAAACCG 61.168 55.000 0.00 0.00 0.00 4.44
432 433 1.001048 GAACCCGCACCTAAACAAACC 60.001 52.381 0.00 0.00 0.00 3.27
433 434 1.334329 CGAACCCGCACCTAAACAAAC 60.334 52.381 0.00 0.00 0.00 2.93
434 435 0.945813 CGAACCCGCACCTAAACAAA 59.054 50.000 0.00 0.00 0.00 2.83
435 436 0.106335 TCGAACCCGCACCTAAACAA 59.894 50.000 0.00 0.00 35.37 2.83
436 437 0.600782 GTCGAACCCGCACCTAAACA 60.601 55.000 0.00 0.00 35.37 2.83
437 438 1.293963 GGTCGAACCCGCACCTAAAC 61.294 60.000 0.00 0.00 35.00 2.01
438 439 1.004679 GGTCGAACCCGCACCTAAA 60.005 57.895 0.00 0.00 35.00 1.85
439 440 1.909781 AGGTCGAACCCGCACCTAA 60.910 57.895 0.00 0.00 41.26 2.69
440 441 2.283388 AGGTCGAACCCGCACCTA 60.283 61.111 0.00 0.00 41.26 3.08
441 442 4.003788 CAGGTCGAACCCGCACCT 62.004 66.667 0.00 0.00 42.64 4.00
442 443 4.309950 ACAGGTCGAACCCGCACC 62.310 66.667 0.00 0.00 39.75 5.01
443 444 2.737376 GACAGGTCGAACCCGCAC 60.737 66.667 0.00 0.00 39.75 5.34
444 445 1.252215 TATGACAGGTCGAACCCGCA 61.252 55.000 0.00 0.00 39.75 5.69
445 446 0.108520 TTATGACAGGTCGAACCCGC 60.109 55.000 0.00 0.00 39.75 6.13
446 447 1.997606 GTTTATGACAGGTCGAACCCG 59.002 52.381 0.00 0.00 39.75 5.28
447 448 2.353323 GGTTTATGACAGGTCGAACCC 58.647 52.381 15.52 0.00 39.75 4.11
448 449 1.997606 CGGTTTATGACAGGTCGAACC 59.002 52.381 16.04 16.04 38.99 3.62
449 450 1.997606 CCGGTTTATGACAGGTCGAAC 59.002 52.381 0.00 0.00 38.62 3.95
450 451 2.373540 CCGGTTTATGACAGGTCGAA 57.626 50.000 0.00 0.00 38.62 3.71
462 463 9.303537 GCATTGCTAATAAATTAAACCGGTTTA 57.696 29.630 31.25 31.25 34.23 2.01
463 464 7.009723 CGCATTGCTAATAAATTAAACCGGTTT 59.990 33.333 33.42 33.42 36.63 3.27
464 465 6.474102 CGCATTGCTAATAAATTAAACCGGTT 59.526 34.615 15.86 15.86 0.00 4.44
465 466 5.974751 CGCATTGCTAATAAATTAAACCGGT 59.025 36.000 0.00 0.00 0.00 5.28
466 467 5.974751 ACGCATTGCTAATAAATTAAACCGG 59.025 36.000 0.00 0.00 0.00 5.28
467 468 6.689241 TCACGCATTGCTAATAAATTAAACCG 59.311 34.615 7.12 0.00 0.00 4.44
468 469 7.979115 TCACGCATTGCTAATAAATTAAACC 57.021 32.000 7.12 0.00 0.00 3.27
471 472 9.029243 CCAAATCACGCATTGCTAATAAATTAA 57.971 29.630 7.12 0.00 0.00 1.40
472 473 7.651304 CCCAAATCACGCATTGCTAATAAATTA 59.349 33.333 7.12 0.00 0.00 1.40
473 474 6.479660 CCCAAATCACGCATTGCTAATAAATT 59.520 34.615 7.12 0.00 0.00 1.82
474 475 5.984926 CCCAAATCACGCATTGCTAATAAAT 59.015 36.000 7.12 0.00 0.00 1.40
475 476 5.105554 ACCCAAATCACGCATTGCTAATAAA 60.106 36.000 7.12 0.00 0.00 1.40
476 477 4.400884 ACCCAAATCACGCATTGCTAATAA 59.599 37.500 7.12 0.00 0.00 1.40
477 478 3.951037 ACCCAAATCACGCATTGCTAATA 59.049 39.130 7.12 0.00 0.00 0.98
478 479 2.760092 ACCCAAATCACGCATTGCTAAT 59.240 40.909 7.12 0.00 0.00 1.73
479 480 2.166829 ACCCAAATCACGCATTGCTAA 58.833 42.857 7.12 0.00 0.00 3.09
480 481 1.832883 ACCCAAATCACGCATTGCTA 58.167 45.000 7.12 0.00 0.00 3.49
481 482 0.968405 AACCCAAATCACGCATTGCT 59.032 45.000 7.12 0.00 0.00 3.91
482 483 1.794512 AAACCCAAATCACGCATTGC 58.205 45.000 0.00 0.00 0.00 3.56
500 501 1.880675 TGGCGTCGGCTATTTCAAAAA 59.119 42.857 20.29 0.00 39.81 1.94
501 502 1.524848 TGGCGTCGGCTATTTCAAAA 58.475 45.000 20.29 0.00 39.81 2.44
502 503 1.524848 TTGGCGTCGGCTATTTCAAA 58.475 45.000 20.29 0.71 39.81 2.69
503 504 1.745232 ATTGGCGTCGGCTATTTCAA 58.255 45.000 20.29 4.91 39.81 2.69
504 505 1.668751 GAATTGGCGTCGGCTATTTCA 59.331 47.619 24.41 0.21 38.84 2.69
505 506 1.002792 GGAATTGGCGTCGGCTATTTC 60.003 52.381 24.41 20.37 38.51 2.17
506 507 1.021968 GGAATTGGCGTCGGCTATTT 58.978 50.000 24.41 13.64 39.81 1.40
507 508 1.157870 CGGAATTGGCGTCGGCTATT 61.158 55.000 24.00 24.00 39.81 1.73
508 509 1.594293 CGGAATTGGCGTCGGCTAT 60.594 57.895 20.29 14.97 39.81 2.97
509 510 2.023414 ATCGGAATTGGCGTCGGCTA 62.023 55.000 20.29 13.12 39.81 3.93
510 511 2.023414 TATCGGAATTGGCGTCGGCT 62.023 55.000 20.29 0.00 39.81 5.52
511 512 1.557443 CTATCGGAATTGGCGTCGGC 61.557 60.000 12.58 12.58 38.90 5.54
512 513 0.249322 ACTATCGGAATTGGCGTCGG 60.249 55.000 0.00 0.00 0.00 4.79
513 514 1.567504 AACTATCGGAATTGGCGTCG 58.432 50.000 0.00 0.00 0.00 5.12
514 515 4.304110 TGATAACTATCGGAATTGGCGTC 58.696 43.478 0.00 0.00 35.48 5.19
515 516 4.202223 ACTGATAACTATCGGAATTGGCGT 60.202 41.667 11.68 0.00 40.69 5.68
516 517 4.307432 ACTGATAACTATCGGAATTGGCG 58.693 43.478 11.68 0.00 40.69 5.69
517 518 5.297547 TGACTGATAACTATCGGAATTGGC 58.702 41.667 11.68 0.00 40.69 4.52
518 519 9.489084 TTTATGACTGATAACTATCGGAATTGG 57.511 33.333 11.68 0.00 40.69 3.16
561 562 7.282675 TCACAATTCGTGTTAGGGTTCTAAAAA 59.717 33.333 7.57 0.00 46.44 1.94
562 563 6.766944 TCACAATTCGTGTTAGGGTTCTAAAA 59.233 34.615 7.57 0.00 46.44 1.52
563 564 6.289834 TCACAATTCGTGTTAGGGTTCTAAA 58.710 36.000 7.57 0.00 46.44 1.85
564 565 5.856156 TCACAATTCGTGTTAGGGTTCTAA 58.144 37.500 7.57 0.00 46.44 2.10
565 566 5.471556 TCACAATTCGTGTTAGGGTTCTA 57.528 39.130 7.57 0.00 46.44 2.10
566 567 4.345859 TCACAATTCGTGTTAGGGTTCT 57.654 40.909 7.57 0.00 46.44 3.01
567 568 6.920569 ATATCACAATTCGTGTTAGGGTTC 57.079 37.500 7.57 0.00 46.44 3.62
568 569 7.696992 AAATATCACAATTCGTGTTAGGGTT 57.303 32.000 7.57 0.82 46.44 4.11
569 570 7.696992 AAAATATCACAATTCGTGTTAGGGT 57.303 32.000 7.57 0.00 46.44 4.34
640 641 8.691661 TCTGAGAATTAACAAAGCCTTAGTTT 57.308 30.769 0.00 0.00 0.00 2.66
668 669 3.502211 CACCGCAACCAAAATACTCTCTT 59.498 43.478 0.00 0.00 0.00 2.85
745 749 2.514013 GCCATTGTACTCGTCGGCG 61.514 63.158 1.15 1.15 39.92 6.46
759 768 1.063717 AGAAATTGGATCACCGGCCAT 60.064 47.619 0.00 0.00 39.42 4.40
805 814 3.990469 GACACAAGTGAATCACGTCTGAT 59.010 43.478 10.86 3.92 39.64 2.90
815 824 6.017109 GGAAATGTACAGTGACACAAGTGAAT 60.017 38.462 8.59 2.30 30.52 2.57
841 851 5.184671 GGAAGATGAGAGTTGCTTGGAAAAT 59.815 40.000 0.00 0.00 0.00 1.82
842 852 4.520492 GGAAGATGAGAGTTGCTTGGAAAA 59.480 41.667 0.00 0.00 0.00 2.29
843 853 4.074970 GGAAGATGAGAGTTGCTTGGAAA 58.925 43.478 0.00 0.00 0.00 3.13
844 854 3.560025 GGGAAGATGAGAGTTGCTTGGAA 60.560 47.826 0.00 0.00 0.00 3.53
845 855 2.026822 GGGAAGATGAGAGTTGCTTGGA 60.027 50.000 0.00 0.00 0.00 3.53
846 856 2.363683 GGGAAGATGAGAGTTGCTTGG 58.636 52.381 0.00 0.00 0.00 3.61
847 857 2.290514 TGGGGAAGATGAGAGTTGCTTG 60.291 50.000 0.00 0.00 0.00 4.01
893 903 2.446802 GGGGAGGAGCTAGGTGGG 60.447 72.222 0.00 0.00 0.00 4.61
894 904 1.458588 GAGGGGAGGAGCTAGGTGG 60.459 68.421 0.00 0.00 0.00 4.61
895 905 0.854218 TAGAGGGGAGGAGCTAGGTG 59.146 60.000 0.00 0.00 0.00 4.00
896 906 1.621733 TTAGAGGGGAGGAGCTAGGT 58.378 55.000 0.00 0.00 0.00 3.08
899 909 2.518407 TGTGATTAGAGGGGAGGAGCTA 59.482 50.000 0.00 0.00 0.00 3.32
901 911 1.414550 GTGTGATTAGAGGGGAGGAGC 59.585 57.143 0.00 0.00 0.00 4.70
907 917 1.556911 AGTGCAGTGTGATTAGAGGGG 59.443 52.381 0.00 0.00 0.00 4.79
908 918 3.430929 GGTAGTGCAGTGTGATTAGAGGG 60.431 52.174 3.69 0.00 0.00 4.30
918 928 2.326428 ACTGGTTAGGTAGTGCAGTGT 58.674 47.619 3.69 0.00 0.00 3.55
929 939 5.422214 ACAATGAGAAGGTACTGGTTAGG 57.578 43.478 0.00 0.00 40.86 2.69
964 981 1.002430 GATGGAGTTGCTGTCTGTGGA 59.998 52.381 0.00 0.00 0.00 4.02
965 982 1.271001 TGATGGAGTTGCTGTCTGTGG 60.271 52.381 0.00 0.00 0.00 4.17
966 983 2.174363 TGATGGAGTTGCTGTCTGTG 57.826 50.000 0.00 0.00 0.00 3.66
967 984 3.430042 AATGATGGAGTTGCTGTCTGT 57.570 42.857 0.00 0.00 0.00 3.41
968 985 4.458295 AGAAAATGATGGAGTTGCTGTCTG 59.542 41.667 0.00 0.00 0.00 3.51
969 986 4.660168 AGAAAATGATGGAGTTGCTGTCT 58.340 39.130 0.00 0.00 0.00 3.41
970 987 4.142513 GGAGAAAATGATGGAGTTGCTGTC 60.143 45.833 0.00 0.00 0.00 3.51
1107 1124 1.296755 GGCTCGCGCATGATGATGAT 61.297 55.000 8.75 0.00 38.10 2.45
1110 1127 2.109593 TGGCTCGCGCATGATGAT 59.890 55.556 8.75 0.00 38.10 2.45
1113 1130 3.197790 GTGTGGCTCGCGCATGAT 61.198 61.111 8.75 0.00 38.10 2.45
1347 1364 4.549516 GGGTACGCGACGAGGCTC 62.550 72.222 15.93 3.87 0.00 4.70
1457 1474 0.744771 GACCATCTCCTTGCCGTTCC 60.745 60.000 0.00 0.00 0.00 3.62
1517 1534 2.244117 CTGCTGCCAGACGTGGGTAT 62.244 60.000 0.00 0.00 45.17 2.73
1518 1535 2.920384 TGCTGCCAGACGTGGGTA 60.920 61.111 0.00 0.00 45.17 3.69
1587 1604 2.738521 CCCGTGGAGAGCACGTTG 60.739 66.667 0.00 0.00 43.69 4.10
1648 1673 7.041508 GCGTATACGGATATAAGCATACCTAGT 60.042 40.741 25.55 0.00 43.96 2.57
1663 1688 4.907946 CGACACGCGTATACGGAT 57.092 55.556 25.55 10.21 40.23 4.18
1749 1785 2.086510 GCCGAGCGCTGATTACAAA 58.913 52.632 18.48 0.00 0.00 2.83
1776 1812 6.460452 CGCAAATTACACAAGTACGTATTCAC 59.540 38.462 0.00 0.00 0.00 3.18
1808 1849 4.026407 GCGTTCATTTAAATCTGGCGTAC 58.974 43.478 0.00 0.00 0.00 3.67
1812 1853 5.171337 CGTATTGCGTTCATTTAAATCTGGC 59.829 40.000 0.00 0.93 35.54 4.85
1845 1886 3.125573 GTCTTCTTTCCGCCCGCC 61.126 66.667 0.00 0.00 0.00 6.13
1917 1966 3.066760 GGGATTTTGGAATTCTAGCGTGG 59.933 47.826 5.23 0.00 0.00 4.94
2044 2123 0.179166 CGTTTGATCGCCATGGTTGG 60.179 55.000 14.67 3.33 46.66 3.77
2178 2260 1.337384 ACGGCAGCCATGACAGGATA 61.337 55.000 13.30 0.00 31.90 2.59
2340 2430 3.057734 GTTTTCGTTCGTGTGGAGATCT 58.942 45.455 0.00 0.00 0.00 2.75
2356 2446 1.206831 GGAAGGCGCTGTCGTTTTC 59.793 57.895 7.64 0.56 38.14 2.29
2509 2608 3.348236 GTTGCAGACCACCAGCTG 58.652 61.111 6.78 6.78 35.28 4.24
2545 2644 1.206371 CTTCCGTTCGGGTAAGGTGAT 59.794 52.381 11.37 0.00 37.00 3.06
2556 2655 0.038526 AGGTGTAGTGCTTCCGTTCG 60.039 55.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.