>input_sequence_73595
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--------------------------------------------------------ATGGCAGCTTCAGCTCTCCACTCC
ACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGTTCGCGACCATCGCCGCCTCGTCCTTCTCTCCAGCCGACGCACA
GGCATCATCATCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGCGTCGTGCGCCGCCCTGCCGCGCCTCGGCA
CCACGCTGCACTACAACTACACGGCGGCGGCCAACACGGTGGCCGTCGCGTTCCGCGCGCCGCAGCCGAGCAAGGCCGGC
GGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACCGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAA
CGGGAGCCTCGTCGCGTACCCGACGCTGCTCGGCAGCTACGCGCCGTCCATGGCGCCCGCCGCCGCCGCGGAGCTGGCGT
TCCCCGTGTCGGACGTGGCGGCGGAGTACGCGAGGAACGGCAAGGAGATGGTCGTGTACGCGACGGTGGCGCTGCCCGGG
AAGGGGAGCAAGTATACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGATGTGCCGGCGGCGCACCCCACCACCGG
GGACAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGA-------------------------------------
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>chr2D_1_TraesCS2D01G131800
AGGCCCGACTTGACAAGAACCTCTCTCACAGCCTTTGACAAACCTTGTCCCTTCCATCCACTAACCTTTCCTTTTGAGGA
TTCAGTTACATATTTGAAAGTACCATATTTTGATCTTCCAACTAATGTTGGGAGACCCAGGTATCTCTCACTCAAAGCTT
CGGACTGCACACCAAGTGTGGTTTTGAGCTCCGTTTTCTTCTCCTCTTGACAACCCTTCCCGAAGAAGATCGATGATTTT
TGTAGGTTGACTCGATGTCCAGAGGCTACTTCTTATTGCGCTAAGATATCCTTGAGAGCCTCCATATTCTCTTTAGTCCC
CTCAAGAAAGACAATACTGTCATCGGCAAAGAGGAGGTGTGTAACATGAGGGCTAGTGCCCCCAAAATAAGGTGAACATT
TTGTTAACGGTCAAACAAACAGTCAAACAAACGGTTTGTTTAGGTGCGGGTTCGACCTGTCATAAACCGGTTTAATTTAT
TAGCAATGCGTGATTTGGGTTTTTTGAAATAGCCGACGCCAATTCCGATAGTTATCAGTCATAAACAATTTTTTGGTAGT
TTTTTTAGAACCCTAACACGAATTGTGATATTTTTATGCTATTCACTAATTTTAGATACAAATCAACAATTTTATAAAAT
AAACTAAGGCTTTGTTAATTCTCAGATGAAGAGAGTATTTTGGTTGCGGTGTGCTGCGCGGAGCTATTTACCACTC---C
ATGACACCAACTAACGTTCCACGAGTATCGCCGACGAGTAC-----AATGGCCGGTGATCCAATTTCTAGGTCACCTACC
CAGTTGATCCCATATCAGACGTGATTCACTTGTGTCAC-TGTACATTTCCATTTTCCAAGCAACTCTCATCTTCCCCACC
AAACCCTAGCTCCTTTATAAACCCCACCTAGCTCCTCCCCTCTAATCACACTGCACTACCTAACCAGTACCTTCTCATTG
TTCCACTCCACA-------GTCCACAGACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCC
ACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGTTCGCGACCATCGCCGCCTCGTCCTTCTCTCCAGCCGACGCACA
GGCATCATCATCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGCGTCGTGCGCCGCCCTGCCGCGCCTCGGCA
CCACGCTGCACTACAACTACACGGCGGCGGCCAACACGGTGGCCGTCGCGTTCCGCGCGCCGCAGCCGAGCAAGGCCGGC
GGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACCGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAA
CGGGAGCCTCGTCGCGTACCCGACGCTGCTCGGCAGCTACGCGCCGTCCATGGCGCCCGCCGCCGCCGCGGAGCTGGCGT
TCCCCGTGTCGGACGTGGCGGCGGAGTACGCGAGGAACGGCAAGGAGATGGTCGTGTACGCGACGGTGGCGCTGCCCGGG
AAGGGGAGCAAGTATACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGATGTGCCGGCGGCGCACCCCACCACCGG
GGACAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAACTACTACCTATATAT--------CGTTACTAGGTA
TGCTTATATCCG---TATACGCGTGTCGTTTGTTCCGTATGTACGTATGTGCCCGCGCGCGAGCCA--TCGCTCCCTCTA
TATATCGATGTATGAAT------GTTTGTAATCAGCGCTCGGCGCAGAGTTGTGAATACGTACT---TGTGTAATTTGCG
CT--CGGCGTACGCCAGATTTAAATGAACGCAATACGCAAATTATGGCGGGCGGAAAGAAGACGATGCGGATTCAGATGC
CTGCG--------CCTGATTTCACCGAATCGGAATCCAAACCGTCCCACGCTAGAATTCCAAAATCCCGG----------
--TCCATATAACCCACCAGATCGAACCTAGCTCAGGCATGTTTGAGCGCCGATCGGTCCTATGGAACCATAGCTCGTCTT
TTGCGCTTCAA-------------AAGGCACA-----TCAATCCAACCATGGCGATCAAACGATCCGCCGACGA---TGT
CCCGGCATCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGTCGCCGCCGCCGCCGCCGCCTTACCTCC
CTTCCGAGGTCATCTTCGGTATCCTGTCATGGCTGCCGTCCAGGTCCGTCCTCCGCTTCAGGTCCGTCTGCAAGTCCTGG
CAGGCCATGCTATCCGACCCAGTTTTC--------ATCACCGCTCATCACGAGTGCTCCAAGAAGACCCGCCCGTCGCTG
CTCATGGTGCCCTGCGCGTACGACCGCGAAGATCTCCACACGAACGAAAACGACAGCGCCTTCCGCATGTCCTTCTACAG
GTACCGCGTCGGCGACGTGGAGGAGC------TGGTGCGCCAGGAGGAGCTGCCCGGAGGGATCTCCCTGTGGAGCAGCC
CCCTGCACTGCGACGGCCTGATCCTCATCTCCACCATGCGGC---AGCAGCTGGTGGTCTGCAACCCGGCGACGAGGGAG
TTCATCACCTTACCCGAACG------GAAGCACTACACCTTCACGTTCCCGAGGGTAGGGTTCGGG---------CGCAG
CAAGAAGTACAAGGTGGCGA
>chr2B_610
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-------------------------------------------------TTTTAGATACATATAAACAATTTTATAAAAT
CAACTAAGGCTTTGTTAATTCTCAGATGGAGAGAGTATTTTGGTTGCGGTGTGCTGCGCGGAGCTATTTACCACGC---C
ATGACACCAACTAACGTTCCACGAGTACTGCCGACGAGTAC-----A-TGGCCGGTGATCCAATTTCTAGGTGACCTACC
CAGTTGATCTCATGTCAGACGCGGTTCACTTGTGTCAC-TGTACATTTCC-------GAGCAACTCTCAGCTTCCCCACC
AAACCATAGCTCCTTTATAAAC----CCCATCTCCTTGCCTCTAATCCCACCGCACTAGCTAACCAGTACCTTCTCATTG
CTCCACTCCACA-------G-------ACAGCAACAACATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCC
ACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCAACCATCGCCGCCTCGTCCTTCTCTCCGGCCAACGCACA
GGCGTCGTCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTACGTGTCGTGCGCCGCCCTGCCGCGCCTCGGCA
CCACGCTGCACTACAACTACACGGCCGCGGCCAACACCGTGGCCGTGGCGTTCCGCGCGCCGCAGACGAGCAAGGCCGGC
GGGTGGGTGGCGTGGGGGCTCAACCCTAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCACTCCAA
CGGCAGCCTCGTCGCGTACCCGACGCTGCTCGACAGCTACGCGCCGTCCATGGCGCCCGCAGACGCCGCGGAGCTGGCGT
TCCCCGTGTCGGACGTGGCGGCGGAGTACGCGAAGAACGGCAAGGAGATGGTCGTGTACGCGACGGTCGCGCTGCCCGGG
AAGGGGAGCAAGTTCACCCACGTGTGGCAGCAGGGGGGCTCGGTGGTGGACGACGTGCCGGCGGCGCACCCCACCACCGG
GGATAACGTCCTCTCAACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATAGGAGTATATGGAGTACGTTCGTAGGTA
TGCTTATTATTCGTATATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGTCA--TCGCTCCCTTTA
TATATCGGTGTATGAAT------GCTTGTATTCAGCGCTCGGCGCAGAGTTATGAATACGTACTGTGTGTCTAACTTGTG
CT--CGGCATACCCCAGATTTAAATGA-------ACGCAAATTATAGCGGGCGGAAAGAAGACGATGAGGATTCAGATGC
CTGCG--------CCTGAGTTCACCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAACGGAATCACGGTCCAT
AATCCATATAACCCATCAGAACCTAGC-------------------------TCGGTCCTCTGGAACCGTAGCTCGTC-T
TTGCGCTTCAA-------------AAGGCACA-----TCAATTCAACCATGGCGATCAAACGATCCGCCGCCGA---TGT
CCCGGCATCTCCCCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGACTCGCCGCCACCGCCGCCGCCTTACCTCC
CTTCCGAGGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCGTCCTCCGCTTCAGGTCCGTCTGCAAGTCCTGG
CAGGCCATGCTATCCGACCCAGTTTTT--------ATCACTGCTCATCACGAGTGCTCCAAGAAGATCCACCCGTCGCTG
CTCATGGTGCCCTGCGCGTACGACCGCGACGATCTCCTCACGAACAAAAACGACAGCGCCTTCCGCATGTCCTTCTACAG
GTACCGCGTCGGCGACGTGGAGGAGC------TGGTGCACCAGGAGGAGCTGCCCCAAGGGATCGCCCTGTGGAGCAGCC
CACTGCACTGCGACGGCCTGATCCTCATCTCCACCATGCGGC---AGGAGCTGGTGGTCTGCAACCCGGCGACGAGGGAG
TTCGTCACCTTACCAGAACG------GAAGCACTACATCTTCGCCTTCCCGAGGGTGGGGTTCGGG--------------
--------------------
>chr2A_708
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-------------------------------------------------------------------TTACCACTCCAGC
ATGACGCCAACTAACGTTCCACGAGTATTGCCGTCCGATAAGTACAA-TGGCCGGTGATCCAATATGTAGGTCACCTACC
CAGTTGATCCCATGTCAGACGTGGTTCACTTGTGTCACTTGTACATTTCC-------AAGCAACTCTCATCTTCCCCACC
AAACCCTAGCCCCTTTAAAAAC----CCCATCTCCTTTCCTCTAACCCCACTGCACTAGCTAGCCAGTACCATCTCATTG
TGCCACTCCACACTCCACAG-------ACAGCAACTCCATCATTTTCTCCCAAGAAATGGCAGCTTCAGCTCTCCACTCC
ACTGGCACTGCGGCCATGTCTCTCTCCCTCTTCCTGCTCGCGGCCATCGCCGCCTCATCATTCTCTCCGGCCAACGCACA
GGCGTCGTCGTCATGCGCGAGCCACACCTTCTCGAGCAACCAGCTCTATGCGTCGTGCACCGCCCTGCCGCGCCTCGGCA
CCACGCTGCACTACAACTACACGGCCGAGGGCAACTCGGTCGCCGTGGCGTTCCGCGCGCCGCAGACGAGCAAGGCCGGC
GGGTGGGTGGCGTGGGGGCTCAACCCCAACGGCACGGGCATGGTGGGCACGCAGGCCGTGGTGGCGTTCCGGCATTCCAA
CGGCAGCCTCGTCGCGTACCCGACGATGCTGGACAGCTACGCGCCGTCCATGGCGCCCGCGGACGGCGCCGAGCTGGCGT
TCCCCGTGTCGGACGTGGCGGCCGAGTACGCCAAGAACGGCAAGGAGATGGTCGTGTACGCGACGGTCGCGCTGCCCGGG
AAGGGGAGCAAGTTCACCCACGTCTGGCAGCAGGGGGGCTCCGTGGTGGACGACGTGCCGGCGGCGCACCCCACCACCGG
GGATAACGTGCTCTCCACGGGCACCATCGATTTCAGCAAGTGAAAGTAACATA------TACGGAGTACGTTCCTAGGTA
TGCTTATTTCGTAC-TATACGCGTGTCGTCTGTTCCGTATGTATGT--------GCCCGCGAGCCATCTCGCTCCCTATA
TATGTCGATATATGAATATGAATGCTTGTAATCAGCGCTCGGCGCACAGTTATGAATACGTACTGTC--TGTAATTTGTG
GTCGCGGCATACCCCAGATTTAGA-GA-------ACGCAAATTATAGCGGGTGGAAAGAAGACGATGCGGATTCAGATGC
CTGCGGGGCTGTGCCTGAGTTCGCCGAATCGGAATCCAAACCGTCTCACGCTAGAATTCCAAAATCCCGG----------
--TCCATATATATAACCCACCAGAACCTACCTCAGGCATGTTTGAGCGCCGATCGTCCGGAACCATATATAGCTCGTC-T
TTGCGCCTCAAAGCCTTTATAAATAAGGCACA-----TCAATTCAACCATGGCGATCAAACGATCTGCCG---ACGATGT
CCCGGCATCTCCTCCTCGGCCGCGGACGGCAAAGCGGATTCTCACCACCGAGT------CGCCGCCGCCGCCTTACCTCC
CTTCCGATGTCATCTTCGGCATCCTGTCATGGCTGCCGTCCAGGTCCG--------------------------------
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>chr2B_1999
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----------------------------------------------------------CTCTGGAACCATAACTCGTC-T
TTCCAC----A-------------AAGGCACATTGATTCAATTCAACCATGGCGATCAAGAGATGCGCCG---A---TGC
CCCGGCAACTCCTCCTCGGCCGCGGACGGCAAAGCGGGCTCTCCTCTCCTCGT------CGCCGCCGCCGCCTTACCTCC
CTTCCGACGTCATCCTCACCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGCTTCACGTCCGTCTGCAAGGCCTGG
CGGGCCATGCTATCCGACCCAGGTTTC--------ATCACCGCCCACCTCGAGCGCTCCAAGACGATCCGCCCGTCGCTG
CTCACGGTGCCCTGCGCGTACGACCCCAACGACATCCAGAAGAACAACGACGACAGCGCCTTCGACGTGTCCTTCTACAG
GTACCGCCCCGGCGGCGCCGAGGAAC------TGCTGCACCGGGAGGAGCTGCCCGGAGGGATCTCCCTGTGGAGCAGCC
CCCTGCACTGCGACGGCCTGATCCTCGTATCCACCATGAGAGAGGAGGAGTTGGTGGTCTGCAACCCGGCGACGAGGGAG
TTCCTCGCCCTGCCGGAGCGGAAGCA------------------------------------------------------
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>chr2D_2040
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-------------------------------------TCAATTCAACCATGGCGATCAAGAGACGCGCCG---A---TGC
CCCGGCAACTCCTCCTCGGTCGCCGACGGCAAAGCGGGCTCTCCTCGACT------CGCCGCCGCCGCCGCCTTACCTCC
CTTCCGACGTCATCCTCGCCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGCTTCACGTCCGTCTGCAAGTCCTGG
CAGGCCATGCTATCCGACCCAGGTTTC--------ATCACCGCCCACCTCGAGCGCTCCAAGACGATCCGCCCGTCGCTG
CTCATGGTGCCCTGCGTGTACGACCCCAACGACATCAAGAGGAACAATGAGGACAGCGCCTTCGACATGTCCTTCTACAG
GTACCGCGCCGGCGGCGCCGAGGAGC------TGGTGCACCGGGAGGAGCTGCCCGGAGGGATCGCCCTGTGGAGCAGCC
CCCTGCACTGCGACGGCCTCATCCT--TATCCACCATGAGAGAGGAGGAGCTGGTGGTCTGCAACCCGGCGACGAGGGAG
TTCCTCGCCCTGCCGGAACGGAAGCAGAAGCACTGCGTGTACACGTTCCCGAGGGCGGGGCTCGGGTTCGACCCCCGCAG
CAAGAAGTACAAGGTGGCGA
>chr2A_2040
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-------------------------------------TCAATTCAACCATGGCGATCAAGAGATGCGCCG---A---TGC
CCGGGCAACTCCTCCTCGGCCGCCGACGGCAAAGCGGGCTCTCCTCTCCT------CGCCGCCGCCGCTGCCTTACCTCC
CTTCCGACGTCATCCTCGCCATCCTGTCATGGCTGCCGCCCAAGTCCGTGCTCCGGTTCAGGTCCGCCTGCAAGGCCTGG
CGGGCCATGCTATCCGACCCAGGTTTCAATGTTTCATCGCCGCCCACCTCGAGCGCTCCAAGACGGTCCGCCCGTCGCTG
CTCATGGTGCCCTGCGCGTACGACCCCGACGACATCCAGAGGAACAATGAGGACAGCGCCTTCGACGTGTCCTTCTACAG
GTACCGCGCCGGCGGCGCCGAGGAGCCGGTGCTGCTGCACCGGGAGGAGCTGCCGCGCGGGATCGCCCTGTGGAGCAGCC
CCCTGCACTGCGACGGCCTGGTCCTCATCTCCACCATGAGAGAGGAGGAGCTGGCGATCTGCAACCCGGCGACGAGGGAG
TTGCTCGCCCTGCCGGAGCGGAATCAGAAGCACTGCGTGTACACGTTCCCGAGGGCGGGGCTCGGG--------------
--------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S----------------
S---------------------------S---------------------------------------------------
----------------------------S------------------S--------------------------------
-------------S---------S--------------------------SSSSSSS-----------------------
----------------------SSSS--S-S-----SS---------S----------S---------------------
--------------------SSSSSSS-----------------------------------------------------
------------------------------------S-------------------------------S---S-------
---S--S--S----------------------------------------------------------------------
-------------------------S--------------------S------------------S--------------
-----------------------------------S--------------------------------------------
---S----------------------------S---------------------------S-S-----------------
---------------------------------S---------------------------------S------------
-------------SS--------------------------------------S--------------------------
---S-----------------------------------------S--SS-SSSSSS---------------S-------
-------S--SS-----------------S-------------S--SSSSSSSS--S--------------------S--
------------------------S--------------------------S--------------------------S-
--------S---S--------------SSSSSSS-----------S----------------------------------
------------------S--------------------------S----------------------------------
--------------------S--------S------------------------------------------------S-
------------------------------------------S---------------------------S---------
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-------------------S------------------------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------S---------------S----------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------S--------------------------------
---S----------S----------------------S------------------S-----------------------
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>forward_360
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--------------------CATCGGCAAAGAGGAGGTGT----------------------------------------
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>reverse_2123
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------------------------------------------CCAACCATGGCGATCAAACG------------------
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