Multiple sequence alignment - TraesCS2D01G119300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G119300 chr2D 100.000 3729 0 0 1 3729 68794901 68798629 0.000000e+00 6887.0
1 TraesCS2D01G119300 chr2D 97.368 38 1 0 1303 1340 68795268 68795305 8.640000e-07 65.8
2 TraesCS2D01G119300 chr2D 97.368 38 1 0 368 405 68796203 68796240 8.640000e-07 65.8
3 TraesCS2D01G119300 chr2A 92.640 788 50 6 2949 3729 65997872 65997086 0.000000e+00 1127.0
4 TraesCS2D01G119300 chr2A 92.386 788 49 9 2950 3729 66087979 66087195 0.000000e+00 1112.0
5 TraesCS2D01G119300 chr2A 85.372 834 80 22 1608 2420 66096150 66095338 0.000000e+00 826.0
6 TraesCS2D01G119300 chr2A 89.620 395 26 5 994 1388 66096712 66096333 4.330000e-134 488.0
7 TraesCS2D01G119300 chr2A 87.879 363 41 3 2 362 66097827 66097466 1.240000e-114 424.0
8 TraesCS2D01G119300 chr2A 79.201 601 89 15 403 1001 66097459 66096893 5.840000e-103 385.0
9 TraesCS2D01G119300 chr2A 89.199 287 20 4 2155 2441 65999351 65999076 7.670000e-92 348.0
10 TraesCS2D01G119300 chr2A 91.327 196 11 3 2982 3171 66088249 66088054 2.860000e-66 263.0
11 TraesCS2D01G119300 chr2A 90.977 133 7 4 2993 3125 66088325 66088198 1.380000e-39 174.0
12 TraesCS2D01G119300 chr2A 81.102 127 22 2 2765 2890 5112185 5112060 2.370000e-17 100.0
13 TraesCS2D01G119300 chr2B 92.593 756 48 2 2982 3729 101976481 101975726 0.000000e+00 1079.0
14 TraesCS2D01G119300 chr2B 87.113 970 87 19 1608 2562 101978052 101977106 0.000000e+00 1064.0
15 TraesCS2D01G119300 chr2B 91.803 732 40 7 1842 2562 101980064 101979342 0.000000e+00 1002.0
16 TraesCS2D01G119300 chr2B 93.122 567 33 3 976 1542 101980784 101980224 0.000000e+00 826.0
17 TraesCS2D01G119300 chr2B 84.903 828 78 28 717 1542 101978853 101978071 0.000000e+00 793.0
18 TraesCS2D01G119300 chr2B 86.052 466 63 2 405 870 101981273 101980810 2.000000e-137 499.0
19 TraesCS2D01G119300 chr2B 89.706 340 34 1 1 339 101981645 101981306 2.060000e-117 433.0
20 TraesCS2D01G119300 chr2B 94.118 187 10 1 2565 2750 101979305 101979119 2.190000e-72 283.0
21 TraesCS2D01G119300 chr2B 91.542 201 13 3 2925 3121 101976629 101976429 1.320000e-69 274.0
22 TraesCS2D01G119300 chr2B 95.575 113 5 0 2568 2680 101977065 101976953 8.230000e-42 182.0
23 TraesCS2D01G119300 chr2B 97.778 90 2 0 2679 2768 101976715 101976626 4.990000e-34 156.0
24 TraesCS2D01G119300 chr2B 94.444 90 5 0 3640 3729 101979117 101979028 5.020000e-29 139.0
25 TraesCS2D01G119300 chr2B 100.000 35 0 0 371 405 101980460 101980426 8.640000e-07 65.8
26 TraesCS2D01G119300 chr1D 84.848 132 17 3 2760 2890 54972585 54972456 3.020000e-26 130.0
27 TraesCS2D01G119300 chr1D 82.308 130 17 5 2764 2890 26370094 26369968 1.420000e-19 108.0
28 TraesCS2D01G119300 chr1D 90.698 43 2 2 2890 2932 385050912 385050872 5.200000e-04 56.5
29 TraesCS2D01G119300 chr3D 81.818 132 22 1 2761 2890 47349713 47349844 3.940000e-20 110.0
30 TraesCS2D01G119300 chr3D 83.333 96 11 5 2798 2890 395904326 395904233 2.390000e-12 84.2
31 TraesCS2D01G119300 chr3D 94.595 37 1 1 2890 2925 482502765 482502801 5.200000e-04 56.5
32 TraesCS2D01G119300 chr5D 82.979 94 13 3 2798 2890 205127262 205127353 8.580000e-12 82.4
33 TraesCS2D01G119300 chr5B 97.222 36 1 0 2890 2925 304688397 304688432 1.120000e-05 62.1
34 TraesCS2D01G119300 chr4B 91.111 45 2 2 2890 2934 580771937 580771895 4.020000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G119300 chr2D 68794901 68798629 3728 False 2339.533333 6887 98.245333 1 3729 3 chr2D.!!$F1 3728
1 TraesCS2D01G119300 chr2A 65997086 65999351 2265 True 737.500000 1127 90.919500 2155 3729 2 chr2A.!!$R2 1574
2 TraesCS2D01G119300 chr2A 66095338 66097827 2489 True 530.750000 826 85.518000 2 2420 4 chr2A.!!$R4 2418
3 TraesCS2D01G119300 chr2A 66087195 66088325 1130 True 516.333333 1112 91.563333 2950 3729 3 chr2A.!!$R3 779
4 TraesCS2D01G119300 chr2B 101975726 101981645 5919 True 522.753846 1079 92.211462 1 3729 13 chr2B.!!$R1 3728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 699 0.181114 CTGGGGATCGAGGCATTTGA 59.819 55.0 0.00 0.00 0.00 2.69 F
698 700 0.846015 TGGGGATCGAGGCATTTGAT 59.154 50.0 0.00 0.00 32.30 2.57 F
1968 2252 0.034616 AACTGCAGAGCTCCACAGAC 59.965 55.0 30.29 8.88 34.25 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1980 0.249155 GAAAGCAGCAGCAGCAACAA 60.249 50.0 12.92 0.0 45.49 2.83 R
2148 2435 0.250684 ATGGCATGAACGTGACCACA 60.251 50.0 0.00 0.0 31.41 4.17 R
2776 5622 0.314935 CGCAAAGCACCTTGGATTGT 59.685 50.0 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.623878 TTTTGCTGGAACCGTGACTA 57.376 45.000 0.00 0.00 0.00 2.59
117 119 2.044946 GCCCGAGCTGGAACCAAT 60.045 61.111 0.00 0.00 42.00 3.16
158 160 4.072131 GACTTGAGTGGTTTTCTATGGCA 58.928 43.478 0.00 0.00 0.00 4.92
168 170 1.546589 TTCTATGGCAACGACGGGGT 61.547 55.000 0.00 0.00 42.51 4.95
175 177 2.203596 AACGACGGGGTGGAGTCT 60.204 61.111 0.00 0.00 35.38 3.24
205 207 2.483538 GCTACCGGCGACCCTATTTTTA 60.484 50.000 9.30 0.00 0.00 1.52
208 210 1.937899 CCGGCGACCCTATTTTTACTG 59.062 52.381 9.30 0.00 0.00 2.74
216 218 5.677567 GACCCTATTTTTACTGGAATCGGA 58.322 41.667 0.00 0.00 0.00 4.55
235 237 2.291605 GGAGCCCTATTTTGTTGGGACT 60.292 50.000 0.91 0.00 44.78 3.85
304 306 2.555199 GAGTTGGAACCATCATCTCGG 58.445 52.381 4.98 0.00 0.00 4.63
328 330 1.748122 GCTGGGACCGACGTCTCTA 60.748 63.158 14.70 0.00 40.49 2.43
335 337 1.299468 CCGACGTCTCTAGCATGCC 60.299 63.158 15.66 0.00 0.00 4.40
339 341 2.423446 GTCTCTAGCATGCCGGGG 59.577 66.667 15.66 7.61 0.00 5.73
343 345 1.459348 TCTAGCATGCCGGGGATCA 60.459 57.895 15.66 0.00 0.00 2.92
346 348 4.881440 GCATGCCGGGGATCAGCA 62.881 66.667 6.36 0.00 41.50 4.41
354 356 2.537560 GGGGATCAGCATTGCGACG 61.538 63.158 2.38 0.00 0.00 5.12
362 364 2.476051 CATTGCGACGTGCTGACC 59.524 61.111 0.00 0.00 46.63 4.02
364 366 2.029288 ATTGCGACGTGCTGACCAG 61.029 57.895 0.00 0.00 46.63 4.00
368 370 4.357947 GACGTGCTGACCAGGCGA 62.358 66.667 0.00 0.00 32.66 5.54
369 371 3.649277 GACGTGCTGACCAGGCGAT 62.649 63.158 0.00 0.00 32.66 4.58
370 372 2.434884 CGTGCTGACCAGGCGATT 60.435 61.111 0.00 0.00 0.00 3.34
371 373 2.034879 CGTGCTGACCAGGCGATTT 61.035 57.895 0.00 0.00 0.00 2.17
372 374 1.503542 GTGCTGACCAGGCGATTTG 59.496 57.895 0.00 0.00 0.00 2.32
373 375 1.675310 TGCTGACCAGGCGATTTGG 60.675 57.895 0.00 0.00 41.60 3.28
374 376 2.409870 GCTGACCAGGCGATTTGGG 61.410 63.158 5.46 0.00 40.11 4.12
375 377 2.361104 TGACCAGGCGATTTGGGC 60.361 61.111 5.46 2.71 44.45 5.36
376 378 2.361104 GACCAGGCGATTTGGGCA 60.361 61.111 1.67 0.00 43.60 5.36
377 379 1.976474 GACCAGGCGATTTGGGCAA 60.976 57.895 1.67 0.00 43.60 4.52
378 380 2.212900 GACCAGGCGATTTGGGCAAC 62.213 60.000 1.67 0.00 43.60 4.17
379 381 2.274645 CCAGGCGATTTGGGCAACA 61.275 57.895 0.00 0.00 39.74 3.33
380 382 1.664873 CAGGCGATTTGGGCAACAA 59.335 52.632 0.00 0.00 37.28 2.83
391 393 4.991153 TTGGGCAACAAATATAATCGCA 57.009 36.364 0.00 0.00 35.79 5.10
392 394 4.991153 TGGGCAACAAATATAATCGCAA 57.009 36.364 0.00 0.00 39.74 4.85
393 395 5.528043 TGGGCAACAAATATAATCGCAAT 57.472 34.783 0.00 0.00 39.74 3.56
394 396 6.641169 TGGGCAACAAATATAATCGCAATA 57.359 33.333 0.00 0.00 39.74 1.90
395 397 7.225784 TGGGCAACAAATATAATCGCAATAT 57.774 32.000 0.00 0.00 39.74 1.28
396 398 7.665690 TGGGCAACAAATATAATCGCAATATT 58.334 30.769 0.00 0.00 39.74 1.28
397 399 8.147058 TGGGCAACAAATATAATCGCAATATTT 58.853 29.630 0.00 0.00 39.13 1.40
398 400 8.647226 GGGCAACAAATATAATCGCAATATTTC 58.353 33.333 6.53 0.00 37.39 2.17
399 401 9.190858 GGCAACAAATATAATCGCAATATTTCA 57.809 29.630 6.53 0.00 37.39 2.69
442 444 1.392589 CCAACTTCCACACTGCAACT 58.607 50.000 0.00 0.00 0.00 3.16
443 445 2.571212 CCAACTTCCACACTGCAACTA 58.429 47.619 0.00 0.00 0.00 2.24
489 491 1.745489 GGTGATGGACCGGTTCTGC 60.745 63.158 15.59 6.52 34.02 4.26
524 526 3.127533 GGCAAGCGATGGCGAACT 61.128 61.111 0.00 0.00 45.46 3.01
582 584 4.789075 GGTCAACGGCGCTCGCTA 62.789 66.667 16.48 1.85 43.89 4.26
588 590 1.848932 AACGGCGCTCGCTATCGATA 61.849 55.000 16.48 4.78 44.56 2.92
602 604 5.163713 CGCTATCGATATCTTCCTCATGTGA 60.164 44.000 5.40 0.00 38.10 3.58
651 653 2.667473 AAGTGAAACGATACGAGGGG 57.333 50.000 0.00 0.00 45.86 4.79
652 654 1.843368 AGTGAAACGATACGAGGGGA 58.157 50.000 0.00 0.00 45.86 4.81
655 657 2.361438 GTGAAACGATACGAGGGGAGAT 59.639 50.000 0.00 0.00 0.00 2.75
667 669 3.092511 GGAGATGGAGCTGGGGCA 61.093 66.667 0.00 0.00 41.70 5.36
671 673 1.076485 GATGGAGCTGGGGCACATT 60.076 57.895 0.00 0.00 41.70 2.71
689 691 4.271816 CGACGGCTGGGGATCGAG 62.272 72.222 0.00 0.00 36.70 4.04
694 696 2.512896 GCTGGGGATCGAGGCATT 59.487 61.111 0.00 0.00 0.00 3.56
695 697 1.152881 GCTGGGGATCGAGGCATTT 60.153 57.895 0.00 0.00 0.00 2.32
696 698 1.450531 GCTGGGGATCGAGGCATTTG 61.451 60.000 0.00 0.00 0.00 2.32
697 699 0.181114 CTGGGGATCGAGGCATTTGA 59.819 55.000 0.00 0.00 0.00 2.69
698 700 0.846015 TGGGGATCGAGGCATTTGAT 59.154 50.000 0.00 0.00 32.30 2.57
699 701 1.242076 GGGGATCGAGGCATTTGATG 58.758 55.000 0.00 0.00 29.61 3.07
700 702 1.242076 GGGATCGAGGCATTTGATGG 58.758 55.000 0.00 0.00 29.61 3.51
754 771 7.874528 GCCGCCCTAAAAGATTACTATTACTTA 59.125 37.037 0.00 0.00 0.00 2.24
801 818 1.394618 ACTCAGGCTAGTCGATCCAC 58.605 55.000 0.00 0.00 0.00 4.02
831 848 4.464597 TGCCGCCCAAGAAAATTAATACTT 59.535 37.500 0.00 0.00 0.00 2.24
833 850 6.322712 TGCCGCCCAAGAAAATTAATACTTAT 59.677 34.615 0.00 0.00 0.00 1.73
929 946 8.844441 TTTGTTTCTGTAAAAAGTAATCCGTG 57.156 30.769 0.00 0.00 0.00 4.94
931 948 6.038382 TGTTTCTGTAAAAAGTAATCCGTGCA 59.962 34.615 0.00 0.00 0.00 4.57
934 951 5.407387 TCTGTAAAAAGTAATCCGTGCAGAC 59.593 40.000 0.00 0.00 0.00 3.51
935 952 3.806316 AAAAAGTAATCCGTGCAGACG 57.194 42.857 0.00 0.00 45.67 4.18
949 966 5.238006 GTGCAGACGAGTATTACTTCTCT 57.762 43.478 0.00 0.00 0.00 3.10
950 967 5.642686 GTGCAGACGAGTATTACTTCTCTT 58.357 41.667 0.00 0.00 0.00 2.85
951 968 6.783162 GTGCAGACGAGTATTACTTCTCTTA 58.217 40.000 0.00 0.00 0.00 2.10
952 969 6.687958 GTGCAGACGAGTATTACTTCTCTTAC 59.312 42.308 0.00 0.86 0.00 2.34
953 970 6.598457 TGCAGACGAGTATTACTTCTCTTACT 59.402 38.462 0.00 0.00 0.00 2.24
954 971 7.120873 TGCAGACGAGTATTACTTCTCTTACTT 59.879 37.037 0.00 0.00 0.00 2.24
955 972 7.641020 GCAGACGAGTATTACTTCTCTTACTTC 59.359 40.741 0.00 0.00 0.00 3.01
956 973 8.666573 CAGACGAGTATTACTTCTCTTACTTCA 58.333 37.037 0.00 0.00 0.00 3.02
1059 1264 0.882927 TCTTGCGTGTTTTCCCCTCG 60.883 55.000 0.00 0.00 0.00 4.63
1100 1305 1.601171 CTTGGGAGGCAGAGTCCAG 59.399 63.158 0.00 0.00 35.57 3.86
1196 1401 3.764237 AGGTAATTCGTCAACCACACT 57.236 42.857 0.00 0.00 35.64 3.55
1279 1484 6.484643 CCCTAGATGGTTGACATAAACTGATG 59.515 42.308 0.00 0.00 40.72 3.07
1410 1660 3.020984 TGTTCACCCCTTTCTGTTGTTC 58.979 45.455 0.00 0.00 0.00 3.18
1518 1771 3.802948 AGTTGCTACATTCTACTCCCG 57.197 47.619 0.13 0.00 0.00 5.14
1523 1776 3.262405 TGCTACATTCTACTCCCGGTTTT 59.738 43.478 0.00 0.00 0.00 2.43
1546 1799 6.678568 TCCAAAATATTCTCCTTTTGCCAA 57.321 33.333 0.00 0.00 39.75 4.52
1547 1800 7.256494 TCCAAAATATTCTCCTTTTGCCAAT 57.744 32.000 0.00 0.00 39.75 3.16
1551 1804 2.437200 TTCTCCTTTTGCCAATTGCG 57.563 45.000 0.00 0.00 45.60 4.85
1555 1808 1.567746 CCTTTTGCCAATTGCGGTGC 61.568 55.000 0.00 0.00 45.60 5.01
1564 1817 1.670811 CAATTGCGGTGCCTACCTTAG 59.329 52.381 0.00 0.00 45.22 2.18
1586 1839 9.160496 CTTAGAAACAAGAAGCTGAATGATACT 57.840 33.333 0.00 0.00 0.00 2.12
1587 1840 7.608308 AGAAACAAGAAGCTGAATGATACTC 57.392 36.000 0.00 0.00 0.00 2.59
1588 1841 6.597280 AGAAACAAGAAGCTGAATGATACTCC 59.403 38.462 0.00 0.00 0.00 3.85
1589 1842 4.775236 ACAAGAAGCTGAATGATACTCCC 58.225 43.478 0.00 0.00 0.00 4.30
1590 1843 4.472833 ACAAGAAGCTGAATGATACTCCCT 59.527 41.667 0.00 0.00 0.00 4.20
1591 1844 4.953940 AGAAGCTGAATGATACTCCCTC 57.046 45.455 0.00 0.00 0.00 4.30
1592 1845 4.555689 AGAAGCTGAATGATACTCCCTCT 58.444 43.478 0.00 0.00 0.00 3.69
1593 1846 4.344679 AGAAGCTGAATGATACTCCCTCTG 59.655 45.833 0.00 0.00 0.00 3.35
1594 1847 3.652055 AGCTGAATGATACTCCCTCTGT 58.348 45.455 0.00 0.00 0.00 3.41
1595 1848 4.809193 AGCTGAATGATACTCCCTCTGTA 58.191 43.478 0.00 0.00 0.00 2.74
1596 1849 4.832266 AGCTGAATGATACTCCCTCTGTAG 59.168 45.833 0.00 0.00 0.00 2.74
1597 1850 4.830046 GCTGAATGATACTCCCTCTGTAGA 59.170 45.833 0.00 0.00 0.00 2.59
1598 1851 5.480073 GCTGAATGATACTCCCTCTGTAGAT 59.520 44.000 0.00 0.00 0.00 1.98
1599 1852 6.350110 GCTGAATGATACTCCCTCTGTAGATC 60.350 46.154 0.00 0.00 0.00 2.75
1600 1853 6.857848 TGAATGATACTCCCTCTGTAGATCT 58.142 40.000 0.00 0.00 0.00 2.75
1601 1854 6.718912 TGAATGATACTCCCTCTGTAGATCTG 59.281 42.308 5.18 0.00 0.00 2.90
1602 1855 5.654901 TGATACTCCCTCTGTAGATCTGT 57.345 43.478 5.18 0.00 0.00 3.41
1603 1856 5.380900 TGATACTCCCTCTGTAGATCTGTG 58.619 45.833 5.18 0.00 0.00 3.66
1604 1857 3.025322 ACTCCCTCTGTAGATCTGTGG 57.975 52.381 5.18 0.00 0.00 4.17
1605 1858 2.583101 ACTCCCTCTGTAGATCTGTGGA 59.417 50.000 5.18 1.46 32.75 4.02
1606 1859 3.221771 CTCCCTCTGTAGATCTGTGGAG 58.778 54.545 5.18 9.21 32.75 3.86
1610 1863 4.385865 CCCTCTGTAGATCTGTGGAGTACT 60.386 50.000 5.18 0.00 32.75 2.73
1619 1872 4.746535 TCTGTGGAGTACTTGTGTTCAA 57.253 40.909 0.00 0.00 0.00 2.69
1646 1899 7.558161 TTCATTACTCTGCATAAGAACATGG 57.442 36.000 0.00 0.00 33.37 3.66
1655 1908 4.411869 TGCATAAGAACATGGTAGATCCCA 59.588 41.667 0.00 0.00 39.27 4.37
1659 1916 2.171448 AGAACATGGTAGATCCCAGCAC 59.829 50.000 0.00 0.00 38.07 4.40
1679 1936 2.976882 ACCTAGTTCAACCAGGTGCTTA 59.023 45.455 6.89 0.00 41.18 3.09
1683 1940 5.123979 CCTAGTTCAACCAGGTGCTTAAATC 59.876 44.000 0.00 0.00 0.00 2.17
1689 1946 5.716228 TCAACCAGGTGCTTAAATCATTCAT 59.284 36.000 0.00 0.00 0.00 2.57
1691 1948 6.699575 ACCAGGTGCTTAAATCATTCATAC 57.300 37.500 0.00 0.00 0.00 2.39
1696 1953 9.060347 CAGGTGCTTAAATCATTCATACTATGT 57.940 33.333 0.00 0.00 0.00 2.29
1697 1954 9.277783 AGGTGCTTAAATCATTCATACTATGTC 57.722 33.333 0.00 0.00 0.00 3.06
1722 1980 4.542697 ACCAGTTAAACTCAATGGGTTGT 58.457 39.130 0.00 0.00 36.69 3.32
1723 1981 4.959839 ACCAGTTAAACTCAATGGGTTGTT 59.040 37.500 0.00 0.00 36.69 2.83
1725 1983 5.163457 CCAGTTAAACTCAATGGGTTGTTGT 60.163 40.000 0.00 0.00 36.69 3.32
1727 1985 6.255453 CAGTTAAACTCAATGGGTTGTTGTTG 59.745 38.462 0.00 0.00 35.28 3.33
1733 1991 0.390124 ATGGGTTGTTGTTGCTGCTG 59.610 50.000 0.00 0.00 0.00 4.41
1734 1992 1.592400 GGGTTGTTGTTGCTGCTGC 60.592 57.895 8.89 8.89 40.20 5.25
1735 1993 1.438814 GGTTGTTGTTGCTGCTGCT 59.561 52.632 17.00 0.00 40.48 4.24
1736 1994 0.872881 GGTTGTTGTTGCTGCTGCTG 60.873 55.000 17.00 0.77 40.48 4.41
1737 1995 1.227031 TTGTTGTTGCTGCTGCTGC 60.227 52.632 22.51 22.51 40.48 5.25
1761 2019 4.705110 TCTCAACCACCTGAATCTGAAA 57.295 40.909 0.00 0.00 0.00 2.69
1766 2024 6.778821 TCAACCACCTGAATCTGAAATTCTA 58.221 36.000 0.00 0.00 0.00 2.10
1768 2026 7.890127 TCAACCACCTGAATCTGAAATTCTAAT 59.110 33.333 0.00 0.00 0.00 1.73
1792 2050 1.272490 TCTTTACTCACAGGGACAGCG 59.728 52.381 0.00 0.00 0.00 5.18
1795 2053 0.965866 TACTCACAGGGACAGCGGAG 60.966 60.000 0.00 0.00 0.00 4.63
1796 2054 2.203640 TCACAGGGACAGCGGAGT 60.204 61.111 0.00 0.00 0.00 3.85
1802 2060 1.122019 AGGGACAGCGGAGTCAAGTT 61.122 55.000 8.79 0.00 40.29 2.66
1856 2132 2.099141 TAAGTGGTGAGTGCTGCATC 57.901 50.000 5.27 5.41 0.00 3.91
1866 2142 2.094675 AGTGCTGCATCCATTACAACC 58.905 47.619 5.27 0.00 0.00 3.77
1869 2145 2.290832 TGCTGCATCCATTACAACCTGA 60.291 45.455 0.00 0.00 0.00 3.86
1878 2154 7.063780 GCATCCATTACAACCTGAAAGAATTTG 59.936 37.037 0.00 0.00 39.27 2.32
1887 2163 8.046107 ACAACCTGAAAGAATTTGAATGGAAAA 58.954 29.630 0.00 0.00 39.27 2.29
1923 2199 4.380841 TCAGCATCTGATTTCATTTGGC 57.619 40.909 0.00 0.00 35.39 4.52
1935 2211 7.905265 TGATTTCATTTGGCCTGAGATTTTTA 58.095 30.769 3.32 0.00 0.00 1.52
1941 2217 9.120538 TCATTTGGCCTGAGATTTTTATACTAC 57.879 33.333 3.32 0.00 0.00 2.73
1943 2219 8.506168 TTTGGCCTGAGATTTTTATACTACTG 57.494 34.615 3.32 0.00 0.00 2.74
1945 2221 8.034313 TGGCCTGAGATTTTTATACTACTGAT 57.966 34.615 3.32 0.00 0.00 2.90
1946 2222 7.933577 TGGCCTGAGATTTTTATACTACTGATG 59.066 37.037 3.32 0.00 0.00 3.07
1960 2244 0.677098 CTGATGGCAACTGCAGAGCT 60.677 55.000 23.35 8.95 44.36 4.09
1968 2252 0.034616 AACTGCAGAGCTCCACAGAC 59.965 55.000 30.29 8.88 34.25 3.51
1971 2255 2.587247 GCAGAGCTCCACAGACCCA 61.587 63.158 10.93 0.00 0.00 4.51
2035 2322 3.181467 GGAGCAGCTATGTCAAGATCTGT 60.181 47.826 0.00 0.00 0.00 3.41
2055 2342 7.601073 TCTGTAGATGCTGTAAGTTTTCATG 57.399 36.000 0.00 0.00 35.30 3.07
2076 2363 2.227865 GCCGATGTATCTCTGAGAGACC 59.772 54.545 24.88 9.05 41.76 3.85
2087 2374 0.545071 TGAGAGACCCTGTGGATGCA 60.545 55.000 0.00 0.00 34.81 3.96
2129 2416 2.254152 TCTCTGGCTACTGGATTGGT 57.746 50.000 0.00 0.00 0.00 3.67
2135 2422 0.105039 GCTACTGGATTGGTCCCGAG 59.895 60.000 0.00 0.00 44.41 4.63
2148 2435 0.546747 TCCCGAGGTGGAAGATGGTT 60.547 55.000 0.00 0.00 42.00 3.67
2198 2485 4.338400 AGAATTGGCTGATGATGTGTCATG 59.662 41.667 0.00 0.00 44.96 3.07
2219 2506 5.586155 TGGTTAACAAGGTGATTTCCCTA 57.414 39.130 8.10 0.00 0.00 3.53
2220 2507 5.954757 TGGTTAACAAGGTGATTTCCCTAA 58.045 37.500 8.10 0.00 0.00 2.69
2385 2677 8.167392 TGGGGAAATTAGACTGAATTTTGTCTA 58.833 33.333 13.85 13.85 42.67 2.59
2438 2730 6.476706 GCTCTTTGTGATTTTGCTTTTGTAGT 59.523 34.615 0.00 0.00 0.00 2.73
2441 2733 9.296400 TCTTTGTGATTTTGCTTTTGTAGTAAC 57.704 29.630 0.00 0.00 0.00 2.50
2466 2758 0.250081 GCAGATGGGCTGTACCTAGC 60.250 60.000 0.00 0.00 46.62 3.42
2517 2809 1.040646 CTGCCCGATAAGCCAGTAGA 58.959 55.000 0.00 0.00 0.00 2.59
2558 2850 5.566032 CGTTCAATGTGTACTGGTTCCTAGA 60.566 44.000 0.00 0.00 0.00 2.43
2562 2854 1.134560 GTGTACTGGTTCCTAGAGCGG 59.865 57.143 0.00 0.00 0.00 5.52
2563 2855 1.272313 TGTACTGGTTCCTAGAGCGGT 60.272 52.381 0.00 0.00 39.70 5.68
2565 2857 1.313812 ACTGGTTCCTAGAGCGGTCG 61.314 60.000 9.28 0.00 31.32 4.79
2566 2858 1.001764 TGGTTCCTAGAGCGGTCGA 60.002 57.895 9.28 2.62 0.00 4.20
2605 5168 0.405585 CCCACATCCAGGGTCAGTTT 59.594 55.000 0.00 0.00 41.61 2.66
2714 5560 8.617809 TCAAATTGTTAATCTAAAGGATACGCC 58.382 33.333 0.00 0.00 46.39 5.68
2764 5610 2.160721 ACACTACTGATCGGACCCAT 57.839 50.000 9.00 0.00 0.00 4.00
2765 5611 2.467880 ACACTACTGATCGGACCCATT 58.532 47.619 9.00 0.00 0.00 3.16
2766 5612 3.638860 ACACTACTGATCGGACCCATTA 58.361 45.455 9.00 0.00 0.00 1.90
2767 5613 4.028131 ACACTACTGATCGGACCCATTAA 58.972 43.478 9.00 0.00 0.00 1.40
2768 5614 4.099573 ACACTACTGATCGGACCCATTAAG 59.900 45.833 9.00 0.00 0.00 1.85
2769 5615 3.641906 ACTACTGATCGGACCCATTAAGG 59.358 47.826 9.00 0.00 37.03 2.69
2770 5616 1.141053 ACTGATCGGACCCATTAAGGC 59.859 52.381 9.00 0.00 35.39 4.35
2771 5617 0.472471 TGATCGGACCCATTAAGGCC 59.528 55.000 0.00 0.00 35.39 5.19
2772 5618 0.765510 GATCGGACCCATTAAGGCCT 59.234 55.000 0.00 0.00 35.39 5.19
2773 5619 1.143073 GATCGGACCCATTAAGGCCTT 59.857 52.381 24.18 24.18 35.39 4.35
2774 5620 0.254747 TCGGACCCATTAAGGCCTTG 59.745 55.000 28.77 12.40 35.39 3.61
2775 5621 0.034477 CGGACCCATTAAGGCCTTGT 60.034 55.000 28.77 16.69 35.39 3.16
2776 5622 1.210967 CGGACCCATTAAGGCCTTGTA 59.789 52.381 28.77 16.03 35.39 2.41
2777 5623 2.651455 GGACCCATTAAGGCCTTGTAC 58.349 52.381 28.77 13.75 35.39 2.90
2778 5624 2.025699 GGACCCATTAAGGCCTTGTACA 60.026 50.000 28.77 4.66 35.39 2.90
2779 5625 3.562609 GGACCCATTAAGGCCTTGTACAA 60.563 47.826 28.77 14.62 35.39 2.41
2780 5626 4.278310 GACCCATTAAGGCCTTGTACAAT 58.722 43.478 28.77 16.33 35.39 2.71
2781 5627 4.278310 ACCCATTAAGGCCTTGTACAATC 58.722 43.478 28.77 4.19 35.39 2.67
2782 5628 3.636764 CCCATTAAGGCCTTGTACAATCC 59.363 47.826 28.77 13.07 35.39 3.01
2783 5629 4.277476 CCATTAAGGCCTTGTACAATCCA 58.723 43.478 28.77 0.77 0.00 3.41
2784 5630 4.709397 CCATTAAGGCCTTGTACAATCCAA 59.291 41.667 28.77 11.10 0.00 3.53
2785 5631 5.163519 CCATTAAGGCCTTGTACAATCCAAG 60.164 44.000 28.77 7.41 39.19 3.61
2792 5638 4.853924 CTTGTACAATCCAAGGTGCTTT 57.146 40.909 9.13 0.00 36.50 3.51
2793 5639 4.549458 CTTGTACAATCCAAGGTGCTTTG 58.451 43.478 9.13 0.00 36.50 2.77
2794 5640 2.295909 TGTACAATCCAAGGTGCTTTGC 59.704 45.455 0.00 0.00 0.00 3.68
2795 5641 0.314935 ACAATCCAAGGTGCTTTGCG 59.685 50.000 0.00 0.00 0.00 4.85
2796 5642 0.388907 CAATCCAAGGTGCTTTGCGG 60.389 55.000 0.00 0.00 0.00 5.69
2797 5643 0.539438 AATCCAAGGTGCTTTGCGGA 60.539 50.000 0.00 0.00 0.00 5.54
2798 5644 0.962356 ATCCAAGGTGCTTTGCGGAG 60.962 55.000 0.00 0.00 0.00 4.63
2799 5645 2.629656 CCAAGGTGCTTTGCGGAGG 61.630 63.158 0.00 0.00 0.00 4.30
2800 5646 1.898574 CAAGGTGCTTTGCGGAGGT 60.899 57.895 0.00 0.00 0.00 3.85
2801 5647 1.898574 AAGGTGCTTTGCGGAGGTG 60.899 57.895 0.00 0.00 0.00 4.00
2802 5648 4.043200 GGTGCTTTGCGGAGGTGC 62.043 66.667 0.00 0.00 0.00 5.01
2803 5649 2.980233 GTGCTTTGCGGAGGTGCT 60.980 61.111 0.00 0.00 35.36 4.40
2804 5650 2.203337 TGCTTTGCGGAGGTGCTT 60.203 55.556 0.00 0.00 35.36 3.91
2805 5651 1.072332 TGCTTTGCGGAGGTGCTTA 59.928 52.632 0.00 0.00 35.36 3.09
2806 5652 0.955428 TGCTTTGCGGAGGTGCTTAG 60.955 55.000 0.00 0.00 35.36 2.18
2807 5653 0.673644 GCTTTGCGGAGGTGCTTAGA 60.674 55.000 0.00 0.00 35.36 2.10
2808 5654 1.363744 CTTTGCGGAGGTGCTTAGAG 58.636 55.000 0.00 0.00 35.36 2.43
2809 5655 0.973632 TTTGCGGAGGTGCTTAGAGA 59.026 50.000 0.00 0.00 35.36 3.10
2810 5656 0.973632 TTGCGGAGGTGCTTAGAGAA 59.026 50.000 0.00 0.00 35.36 2.87
2811 5657 0.973632 TGCGGAGGTGCTTAGAGAAA 59.026 50.000 0.00 0.00 35.36 2.52
2812 5658 1.555075 TGCGGAGGTGCTTAGAGAAAT 59.445 47.619 0.00 0.00 35.36 2.17
2813 5659 2.764010 TGCGGAGGTGCTTAGAGAAATA 59.236 45.455 0.00 0.00 35.36 1.40
2814 5660 3.196901 TGCGGAGGTGCTTAGAGAAATAA 59.803 43.478 0.00 0.00 35.36 1.40
2815 5661 4.189231 GCGGAGGTGCTTAGAGAAATAAA 58.811 43.478 0.00 0.00 0.00 1.40
2816 5662 4.816925 GCGGAGGTGCTTAGAGAAATAAAT 59.183 41.667 0.00 0.00 0.00 1.40
2817 5663 5.050023 GCGGAGGTGCTTAGAGAAATAAATC 60.050 44.000 0.00 0.00 0.00 2.17
2818 5664 6.049149 CGGAGGTGCTTAGAGAAATAAATCA 58.951 40.000 0.00 0.00 0.00 2.57
2819 5665 6.538742 CGGAGGTGCTTAGAGAAATAAATCAA 59.461 38.462 0.00 0.00 0.00 2.57
2820 5666 7.254590 CGGAGGTGCTTAGAGAAATAAATCAAG 60.255 40.741 0.00 0.00 0.00 3.02
2821 5667 7.770897 GGAGGTGCTTAGAGAAATAAATCAAGA 59.229 37.037 0.00 0.00 0.00 3.02
2822 5668 9.336171 GAGGTGCTTAGAGAAATAAATCAAGAT 57.664 33.333 0.00 0.00 0.00 2.40
2823 5669 9.692325 AGGTGCTTAGAGAAATAAATCAAGATT 57.308 29.630 0.00 0.00 0.00 2.40
2835 5681 9.875691 AAATAAATCAAGATTTTCCTAAGCACC 57.124 29.630 12.73 0.00 40.99 5.01
2836 5682 5.567138 AATCAAGATTTTCCTAAGCACCG 57.433 39.130 0.00 0.00 0.00 4.94
2837 5683 3.343617 TCAAGATTTTCCTAAGCACCGG 58.656 45.455 0.00 0.00 0.00 5.28
2838 5684 3.081804 CAAGATTTTCCTAAGCACCGGT 58.918 45.455 0.00 0.00 0.00 5.28
2839 5685 2.711542 AGATTTTCCTAAGCACCGGTG 58.288 47.619 30.66 30.66 0.00 4.94
2852 5698 3.634568 CACCGGTGCTTATTTGTTCAA 57.365 42.857 24.02 0.00 0.00 2.69
2853 5699 3.564511 CACCGGTGCTTATTTGTTCAAG 58.435 45.455 24.02 0.00 0.00 3.02
2854 5700 2.556622 ACCGGTGCTTATTTGTTCAAGG 59.443 45.455 6.12 0.00 0.00 3.61
2855 5701 2.556622 CCGGTGCTTATTTGTTCAAGGT 59.443 45.455 0.00 0.00 0.00 3.50
2856 5702 3.754323 CCGGTGCTTATTTGTTCAAGGTA 59.246 43.478 0.00 0.00 0.00 3.08
2857 5703 4.142687 CCGGTGCTTATTTGTTCAAGGTAG 60.143 45.833 0.00 0.00 0.00 3.18
2858 5704 4.693566 CGGTGCTTATTTGTTCAAGGTAGA 59.306 41.667 0.00 0.00 0.00 2.59
2859 5705 5.354234 CGGTGCTTATTTGTTCAAGGTAGAT 59.646 40.000 0.00 0.00 0.00 1.98
2860 5706 6.555315 GGTGCTTATTTGTTCAAGGTAGATG 58.445 40.000 0.00 0.00 0.00 2.90
2861 5707 6.030228 GTGCTTATTTGTTCAAGGTAGATGC 58.970 40.000 0.00 0.00 0.00 3.91
2862 5708 5.945784 TGCTTATTTGTTCAAGGTAGATGCT 59.054 36.000 0.00 0.00 0.00 3.79
2863 5709 6.434028 TGCTTATTTGTTCAAGGTAGATGCTT 59.566 34.615 0.00 0.00 0.00 3.91
2864 5710 7.609918 TGCTTATTTGTTCAAGGTAGATGCTTA 59.390 33.333 0.00 0.00 0.00 3.09
2865 5711 8.458843 GCTTATTTGTTCAAGGTAGATGCTTAA 58.541 33.333 0.00 0.00 0.00 1.85
2870 5716 9.733556 TTTGTTCAAGGTAGATGCTTAATTAGA 57.266 29.630 0.00 0.00 0.00 2.10
2871 5717 9.905713 TTGTTCAAGGTAGATGCTTAATTAGAT 57.094 29.630 0.00 0.00 0.00 1.98
2872 5718 9.330063 TGTTCAAGGTAGATGCTTAATTAGATG 57.670 33.333 0.00 0.00 0.00 2.90
2873 5719 9.331282 GTTCAAGGTAGATGCTTAATTAGATGT 57.669 33.333 0.00 0.00 0.00 3.06
2874 5720 9.547753 TTCAAGGTAGATGCTTAATTAGATGTC 57.452 33.333 0.00 0.00 0.00 3.06
2875 5721 8.928448 TCAAGGTAGATGCTTAATTAGATGTCT 58.072 33.333 0.00 0.00 0.00 3.41
2876 5722 9.202273 CAAGGTAGATGCTTAATTAGATGTCTC 57.798 37.037 0.00 0.00 0.00 3.36
2877 5723 8.719645 AGGTAGATGCTTAATTAGATGTCTCT 57.280 34.615 0.00 0.00 35.39 3.10
2878 5724 9.153479 AGGTAGATGCTTAATTAGATGTCTCTT 57.847 33.333 0.00 0.00 32.66 2.85
2879 5725 9.418045 GGTAGATGCTTAATTAGATGTCTCTTC 57.582 37.037 0.00 0.00 32.66 2.87
2882 5728 8.703743 AGATGCTTAATTAGATGTCTCTTCTGT 58.296 33.333 0.00 0.00 32.66 3.41
2883 5729 9.973450 GATGCTTAATTAGATGTCTCTTCTGTA 57.027 33.333 0.00 0.00 32.66 2.74
2884 5730 9.979578 ATGCTTAATTAGATGTCTCTTCTGTAG 57.020 33.333 0.00 0.00 32.66 2.74
2885 5731 9.190317 TGCTTAATTAGATGTCTCTTCTGTAGA 57.810 33.333 0.00 0.00 32.66 2.59
2897 5743 9.698309 TGTCTCTTCTGTAGAAATAAAACTCAG 57.302 33.333 0.00 0.00 33.07 3.35
2898 5744 9.699703 GTCTCTTCTGTAGAAATAAAACTCAGT 57.300 33.333 0.00 0.00 33.07 3.41
2915 5761 9.529325 AAAACTCAGTTTATTTTTCTAAGCACC 57.471 29.630 2.38 0.00 34.43 5.01
2916 5762 8.465273 AACTCAGTTTATTTTTCTAAGCACCT 57.535 30.769 0.00 0.00 0.00 4.00
2917 5763 9.569122 AACTCAGTTTATTTTTCTAAGCACCTA 57.431 29.630 0.00 0.00 0.00 3.08
2918 5764 9.220767 ACTCAGTTTATTTTTCTAAGCACCTAG 57.779 33.333 0.00 0.00 0.00 3.02
2919 5765 8.040716 TCAGTTTATTTTTCTAAGCACCTAGC 57.959 34.615 0.00 0.00 46.19 3.42
3027 6564 9.827198 ATCTAGAGATACTCAAGAGATGGATTT 57.173 33.333 3.73 0.00 30.83 2.17
3028 6565 9.076781 TCTAGAGATACTCAAGAGATGGATTTG 57.923 37.037 3.73 0.00 32.06 2.32
3039 6576 7.833682 TCAAGAGATGGATTTGTTAATTAGCCA 59.166 33.333 0.00 0.00 0.00 4.75
3043 6580 4.027437 TGGATTTGTTAATTAGCCACCCC 58.973 43.478 0.00 0.00 0.00 4.95
3095 6632 3.257127 CACCAATGCATGCATATCCATCA 59.743 43.478 32.36 1.82 35.31 3.07
3171 6712 3.712881 GGACACACGCTCAACCGC 61.713 66.667 0.00 0.00 0.00 5.68
3208 6749 4.942483 TCGAACATAGCCCTAGTATAGAGC 59.058 45.833 0.00 0.00 43.50 4.09
3287 6828 1.675310 CTGAATTCGGCCAGCCACA 60.675 57.895 9.78 0.00 35.37 4.17
3361 6902 0.250793 TCGTGTCCAACCACAACACT 59.749 50.000 3.69 0.00 40.84 3.55
3364 6905 0.034574 TGTCCAACCACAACACTGCT 60.035 50.000 0.00 0.00 0.00 4.24
3369 6910 0.756442 AACCACAACACTGCTGGCAT 60.756 50.000 0.00 0.00 30.91 4.40
3506 7047 4.671590 TCGGGCTGGACCTCGTCA 62.672 66.667 0.00 0.00 39.10 4.35
3581 7122 1.080434 GCCGTCTTCGACTCTGCTT 60.080 57.895 0.00 0.00 39.71 3.91
3582 7123 0.667792 GCCGTCTTCGACTCTGCTTT 60.668 55.000 0.00 0.00 39.71 3.51
3629 7170 0.320421 CACAGACCCCAAGTGTACGG 60.320 60.000 0.00 0.00 0.00 4.02
3647 7188 4.033251 CCCCCTACACCCCCTCCA 62.033 72.222 0.00 0.00 0.00 3.86
3650 7191 2.285368 CCTACACCCCCTCCAGCA 60.285 66.667 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 1.345089 TCGGCTACAGCAAACCAGTTA 59.655 47.619 3.24 0.00 44.36 2.24
131 133 2.367567 AGAAAACCACTCAAGTCGGCTA 59.632 45.455 0.00 0.00 0.00 3.93
133 135 1.594331 AGAAAACCACTCAAGTCGGC 58.406 50.000 0.00 0.00 0.00 5.54
158 160 1.835712 AAGACTCCACCCCGTCGTT 60.836 57.895 0.00 0.00 35.38 3.85
168 170 3.674997 GGTAGCAACAATCAAGACTCCA 58.325 45.455 0.00 0.00 0.00 3.86
175 177 0.320858 TCGCCGGTAGCAACAATCAA 60.321 50.000 1.90 0.00 44.04 2.57
205 207 1.807814 AATAGGGCTCCGATTCCAGT 58.192 50.000 0.00 0.00 0.00 4.00
208 210 2.932261 ACAAAATAGGGCTCCGATTCC 58.068 47.619 1.24 0.00 28.95 3.01
216 218 2.557452 CCAGTCCCAACAAAATAGGGCT 60.557 50.000 0.00 0.00 42.52 5.19
328 330 4.575973 GCTGATCCCCGGCATGCT 62.576 66.667 18.92 0.00 46.40 3.79
335 337 2.203056 TCGCAATGCTGATCCCCG 60.203 61.111 2.94 0.00 0.00 5.73
339 341 1.297158 GCACGTCGCAATGCTGATC 60.297 57.895 2.94 0.00 41.79 2.92
346 348 2.029288 CTGGTCAGCACGTCGCAAT 61.029 57.895 11.58 0.00 46.13 3.56
354 356 1.503542 CAAATCGCCTGGTCAGCAC 59.496 57.895 0.00 0.00 0.00 4.40
362 364 0.033228 TTTGTTGCCCAAATCGCCTG 59.967 50.000 0.00 0.00 38.12 4.85
369 371 5.330455 TGCGATTATATTTGTTGCCCAAA 57.670 34.783 1.65 1.65 46.59 3.28
370 372 4.991153 TGCGATTATATTTGTTGCCCAA 57.009 36.364 0.00 0.00 0.00 4.12
371 373 4.991153 TTGCGATTATATTTGTTGCCCA 57.009 36.364 0.00 0.00 0.00 5.36
372 374 8.532977 AAATATTGCGATTATATTTGTTGCCC 57.467 30.769 0.00 0.00 37.00 5.36
373 375 9.190858 TGAAATATTGCGATTATATTTGTTGCC 57.809 29.630 11.90 2.63 37.95 4.52
377 379 9.831737 GCTCTGAAATATTGCGATTATATTTGT 57.168 29.630 11.90 0.00 37.95 2.83
378 380 9.282247 GGCTCTGAAATATTGCGATTATATTTG 57.718 33.333 11.90 3.32 37.95 2.32
379 381 8.177663 CGGCTCTGAAATATTGCGATTATATTT 58.822 33.333 0.00 8.60 39.59 1.40
380 382 7.677276 GCGGCTCTGAAATATTGCGATTATATT 60.677 37.037 0.00 0.00 31.26 1.28
381 383 6.238211 GCGGCTCTGAAATATTGCGATTATAT 60.238 38.462 0.00 0.00 0.00 0.86
382 384 5.063438 GCGGCTCTGAAATATTGCGATTATA 59.937 40.000 0.00 0.00 0.00 0.98
383 385 4.142816 GCGGCTCTGAAATATTGCGATTAT 60.143 41.667 0.00 0.00 0.00 1.28
384 386 3.186409 GCGGCTCTGAAATATTGCGATTA 59.814 43.478 0.00 0.00 0.00 1.75
385 387 2.031682 GCGGCTCTGAAATATTGCGATT 60.032 45.455 0.00 0.00 0.00 3.34
386 388 1.532868 GCGGCTCTGAAATATTGCGAT 59.467 47.619 0.00 0.00 0.00 4.58
387 389 0.937304 GCGGCTCTGAAATATTGCGA 59.063 50.000 0.00 0.00 0.00 5.10
388 390 0.383491 CGCGGCTCTGAAATATTGCG 60.383 55.000 0.00 0.00 38.28 4.85
389 391 0.658536 GCGCGGCTCTGAAATATTGC 60.659 55.000 8.83 0.00 0.00 3.56
390 392 0.040958 GGCGCGGCTCTGAAATATTG 60.041 55.000 27.05 0.00 0.00 1.90
391 393 1.498865 CGGCGCGGCTCTGAAATATT 61.499 55.000 30.60 0.00 0.00 1.28
392 394 1.956170 CGGCGCGGCTCTGAAATAT 60.956 57.895 30.60 0.00 0.00 1.28
393 395 2.584970 CGGCGCGGCTCTGAAATA 60.585 61.111 30.60 0.00 0.00 1.40
394 396 4.760047 ACGGCGCGGCTCTGAAAT 62.760 61.111 30.60 4.02 0.00 2.17
413 415 2.955609 GGAAGTTGGCCGATTCCAA 58.044 52.632 22.19 0.00 43.36 3.53
442 444 2.421314 CATGGGTGCTCGCCGATA 59.579 61.111 0.00 0.00 0.00 2.92
460 462 3.797353 CATCACCCCCGTCCCCAG 61.797 72.222 0.00 0.00 0.00 4.45
473 475 2.225791 CTCGCAGAACCGGTCCATCA 62.226 60.000 8.04 0.00 34.09 3.07
502 504 3.064324 GCCATCGCTTGCCCTGTT 61.064 61.111 0.00 0.00 0.00 3.16
506 508 4.179579 GTTCGCCATCGCTTGCCC 62.180 66.667 0.00 0.00 35.26 5.36
519 521 1.134530 CTCGAAGCACCGCTAGTTCG 61.135 60.000 4.93 4.93 38.25 3.95
524 526 1.801332 GACTCTCGAAGCACCGCTA 59.199 57.895 0.00 0.00 38.25 4.26
582 584 4.082517 CGGTCACATGAGGAAGATATCGAT 60.083 45.833 2.16 2.16 0.00 3.59
588 590 1.406069 GCACGGTCACATGAGGAAGAT 60.406 52.381 0.00 0.00 0.00 2.40
627 629 3.060895 CCTCGTATCGTTTCACTTTGCTC 59.939 47.826 0.00 0.00 0.00 4.26
635 637 2.133281 TCTCCCCTCGTATCGTTTCA 57.867 50.000 0.00 0.00 0.00 2.69
651 653 1.992519 ATGTGCCCCAGCTCCATCTC 61.993 60.000 0.00 0.00 40.80 2.75
652 654 1.578215 AATGTGCCCCAGCTCCATCT 61.578 55.000 0.00 0.00 40.80 2.90
655 657 2.356278 GAATGTGCCCCAGCTCCA 59.644 61.111 0.00 0.00 40.80 3.86
667 669 2.311688 GATCCCCAGCCGTCGAATGT 62.312 60.000 0.00 0.00 0.00 2.71
671 673 4.807631 TCGATCCCCAGCCGTCGA 62.808 66.667 0.00 0.00 40.38 4.20
689 691 0.462375 TGCATGAGCCATCAAATGCC 59.538 50.000 0.00 0.00 39.62 4.40
694 696 2.409055 GCCGTGCATGAGCCATCAA 61.409 57.895 7.72 0.00 39.39 2.57
695 697 2.825075 AAGCCGTGCATGAGCCATCA 62.825 55.000 7.72 0.00 41.13 3.07
696 698 1.660560 AAAGCCGTGCATGAGCCATC 61.661 55.000 7.72 0.00 41.13 3.51
697 699 1.660560 GAAAGCCGTGCATGAGCCAT 61.661 55.000 7.72 1.20 41.13 4.40
698 700 2.282391 AAAGCCGTGCATGAGCCA 60.282 55.556 7.72 0.00 41.13 4.75
699 701 2.486966 GAAAGCCGTGCATGAGCC 59.513 61.111 7.72 0.00 41.13 4.70
700 702 2.099062 CGAAAGCCGTGCATGAGC 59.901 61.111 7.72 9.34 42.57 4.26
701 703 2.787249 CCGAAAGCCGTGCATGAG 59.213 61.111 7.72 0.00 36.31 2.90
702 704 3.430862 GCCGAAAGCCGTGCATGA 61.431 61.111 7.72 0.00 35.50 3.07
772 789 6.409704 TCGACTAGCCTGAGTAAGTTACTTA 58.590 40.000 16.56 11.71 39.59 2.24
773 790 5.251764 TCGACTAGCCTGAGTAAGTTACTT 58.748 41.667 16.56 2.32 39.59 2.24
775 792 5.277925 GGATCGACTAGCCTGAGTAAGTTAC 60.278 48.000 4.78 4.78 0.00 2.50
833 850 8.596271 TGTATGACAAGTAATTTCAGACGAAA 57.404 30.769 0.00 0.00 44.99 3.46
906 923 6.038382 TGCACGGATTACTTTTTACAGAAACA 59.962 34.615 0.00 0.00 0.00 2.83
907 924 6.432107 TGCACGGATTACTTTTTACAGAAAC 58.568 36.000 0.00 0.00 0.00 2.78
913 930 4.386652 TCGTCTGCACGGATTACTTTTTAC 59.613 41.667 0.00 0.00 46.70 2.01
914 931 4.558178 TCGTCTGCACGGATTACTTTTTA 58.442 39.130 0.00 0.00 46.70 1.52
915 932 3.395639 TCGTCTGCACGGATTACTTTTT 58.604 40.909 0.00 0.00 46.70 1.94
917 934 2.029290 ACTCGTCTGCACGGATTACTTT 60.029 45.455 0.00 0.00 46.70 2.66
925 942 2.846039 AGTAATACTCGTCTGCACGG 57.154 50.000 0.00 0.00 46.70 4.94
929 946 7.018635 AGTAAGAGAAGTAATACTCGTCTGC 57.981 40.000 0.00 1.04 38.08 4.26
931 948 8.789825 TGAAGTAAGAGAAGTAATACTCGTCT 57.210 34.615 0.00 0.00 38.08 4.18
941 958 9.702253 ATCCTGAAGTATGAAGTAAGAGAAGTA 57.298 33.333 0.00 0.00 0.00 2.24
942 959 8.602472 ATCCTGAAGTATGAAGTAAGAGAAGT 57.398 34.615 0.00 0.00 0.00 3.01
951 968 9.442047 CAACTCTTTTATCCTGAAGTATGAAGT 57.558 33.333 0.00 0.00 0.00 3.01
952 969 8.394121 GCAACTCTTTTATCCTGAAGTATGAAG 58.606 37.037 0.00 0.00 0.00 3.02
953 970 7.064609 CGCAACTCTTTTATCCTGAAGTATGAA 59.935 37.037 0.00 0.00 0.00 2.57
954 971 6.535150 CGCAACTCTTTTATCCTGAAGTATGA 59.465 38.462 0.00 0.00 0.00 2.15
955 972 6.535150 TCGCAACTCTTTTATCCTGAAGTATG 59.465 38.462 0.00 0.00 0.00 2.39
956 973 6.535508 GTCGCAACTCTTTTATCCTGAAGTAT 59.464 38.462 0.00 0.00 0.00 2.12
1027 1232 1.336702 ACGCAAGACAGAGCAGAAGAG 60.337 52.381 0.00 0.00 43.62 2.85
1140 1345 2.124403 GGCGAGGAGACGGTAGGA 60.124 66.667 0.00 0.00 0.00 2.94
1186 1391 3.181448 GGGGTAGAAGAAAGTGTGGTTGA 60.181 47.826 0.00 0.00 0.00 3.18
1191 1396 1.346722 ACGGGGGTAGAAGAAAGTGTG 59.653 52.381 0.00 0.00 0.00 3.82
1196 1401 3.560453 CCATGAAACGGGGGTAGAAGAAA 60.560 47.826 0.00 0.00 0.00 2.52
1279 1484 1.293963 TGCAGTCTCGCAAGCATCAC 61.294 55.000 0.00 0.00 39.45 3.06
1372 1577 0.700564 ACATCTTGGGGCAGTCATGT 59.299 50.000 0.00 0.00 0.00 3.21
1518 1771 7.094805 GGCAAAAGGAGAATATTTTGGAAAACC 60.095 37.037 11.16 1.92 43.42 3.27
1523 1776 6.678568 TTGGCAAAAGGAGAATATTTTGGA 57.321 33.333 0.00 0.00 43.42 3.53
1551 1804 4.281898 TCTTGTTTCTAAGGTAGGCACC 57.718 45.455 0.00 0.00 46.19 5.01
1555 1808 5.794894 TCAGCTTCTTGTTTCTAAGGTAGG 58.205 41.667 0.00 0.00 30.29 3.18
1564 1817 6.183360 GGGAGTATCATTCAGCTTCTTGTTTC 60.183 42.308 0.00 0.00 36.25 2.78
1586 1839 2.583101 ACTCCACAGATCTACAGAGGGA 59.417 50.000 15.62 7.60 0.00 4.20
1587 1840 3.025322 ACTCCACAGATCTACAGAGGG 57.975 52.381 15.62 4.37 0.00 4.30
1588 1841 4.787551 AGTACTCCACAGATCTACAGAGG 58.212 47.826 15.62 4.84 0.00 3.69
1589 1842 5.650266 ACAAGTACTCCACAGATCTACAGAG 59.350 44.000 11.57 11.57 0.00 3.35
1590 1843 5.416013 CACAAGTACTCCACAGATCTACAGA 59.584 44.000 0.00 0.00 0.00 3.41
1591 1844 5.184096 ACACAAGTACTCCACAGATCTACAG 59.816 44.000 0.00 0.00 0.00 2.74
1592 1845 5.077564 ACACAAGTACTCCACAGATCTACA 58.922 41.667 0.00 0.00 0.00 2.74
1593 1846 5.646577 ACACAAGTACTCCACAGATCTAC 57.353 43.478 0.00 0.00 0.00 2.59
1594 1847 5.773176 TGAACACAAGTACTCCACAGATCTA 59.227 40.000 0.00 0.00 0.00 1.98
1595 1848 4.588951 TGAACACAAGTACTCCACAGATCT 59.411 41.667 0.00 0.00 0.00 2.75
1596 1849 4.883083 TGAACACAAGTACTCCACAGATC 58.117 43.478 0.00 0.00 0.00 2.75
1597 1850 4.955811 TGAACACAAGTACTCCACAGAT 57.044 40.909 0.00 0.00 0.00 2.90
1598 1851 4.746535 TTGAACACAAGTACTCCACAGA 57.253 40.909 0.00 0.00 0.00 3.41
1599 1852 6.377327 AAATTGAACACAAGTACTCCACAG 57.623 37.500 0.00 0.00 0.00 3.66
1600 1853 6.375736 TGAAAATTGAACACAAGTACTCCACA 59.624 34.615 0.00 0.00 0.00 4.17
1601 1854 6.791303 TGAAAATTGAACACAAGTACTCCAC 58.209 36.000 0.00 0.00 0.00 4.02
1602 1855 7.581213 ATGAAAATTGAACACAAGTACTCCA 57.419 32.000 0.00 0.00 0.00 3.86
1603 1856 9.394477 GTAATGAAAATTGAACACAAGTACTCC 57.606 33.333 0.00 0.00 0.00 3.85
1610 1863 7.487484 TGCAGAGTAATGAAAATTGAACACAA 58.513 30.769 0.00 0.00 0.00 3.33
1646 1899 3.031736 TGAACTAGGTGCTGGGATCTAC 58.968 50.000 0.00 0.00 0.00 2.59
1691 1948 8.883731 CCATTGAGTTTAACTGGTTAGACATAG 58.116 37.037 0.93 0.00 33.94 2.23
1696 1953 6.195600 ACCCATTGAGTTTAACTGGTTAGA 57.804 37.500 0.93 0.00 0.00 2.10
1697 1954 6.264518 ACAACCCATTGAGTTTAACTGGTTAG 59.735 38.462 13.88 11.47 39.30 2.34
1704 1961 5.006261 GCAACAACAACCCATTGAGTTTAAC 59.994 40.000 0.00 0.00 39.30 2.01
1722 1980 0.249155 GAAAGCAGCAGCAGCAACAA 60.249 50.000 12.92 0.00 45.49 2.83
1723 1981 1.105167 AGAAAGCAGCAGCAGCAACA 61.105 50.000 12.92 0.00 45.49 3.33
1725 1983 0.820482 TGAGAAAGCAGCAGCAGCAA 60.820 50.000 12.92 0.00 45.49 3.91
1727 1985 0.386985 GTTGAGAAAGCAGCAGCAGC 60.387 55.000 3.17 0.46 45.49 5.25
1733 1991 0.595095 CAGGTGGTTGAGAAAGCAGC 59.405 55.000 10.84 10.84 45.71 5.25
1734 1992 2.260844 TCAGGTGGTTGAGAAAGCAG 57.739 50.000 0.00 0.00 0.00 4.24
1735 1993 2.727123 TTCAGGTGGTTGAGAAAGCA 57.273 45.000 0.00 0.00 0.00 3.91
1736 1994 3.190118 CAGATTCAGGTGGTTGAGAAAGC 59.810 47.826 0.00 0.00 0.00 3.51
1737 1995 4.645535 TCAGATTCAGGTGGTTGAGAAAG 58.354 43.478 0.00 0.00 0.00 2.62
1761 2019 9.213777 TCCCTGTGAGTAAAGATGTATTAGAAT 57.786 33.333 0.00 0.00 0.00 2.40
1766 2024 6.620877 TGTCCCTGTGAGTAAAGATGTATT 57.379 37.500 0.00 0.00 0.00 1.89
1768 2026 4.081642 GCTGTCCCTGTGAGTAAAGATGTA 60.082 45.833 0.00 0.00 0.00 2.29
1777 2035 2.203640 TCCGCTGTCCCTGTGAGT 60.204 61.111 0.00 0.00 0.00 3.41
1792 2050 1.279840 GTGCACGCAACTTGACTCC 59.720 57.895 0.00 0.00 0.00 3.85
1795 2053 0.923911 GTTCGTGCACGCAACTTGAC 60.924 55.000 33.63 17.44 39.60 3.18
1796 2054 1.350319 GTTCGTGCACGCAACTTGA 59.650 52.632 33.63 12.62 39.60 3.02
1802 2060 4.908687 AGCTGGTTCGTGCACGCA 62.909 61.111 33.63 22.21 39.60 5.24
1831 2089 1.421646 AGCACTCACCACTTAAAGGCT 59.578 47.619 0.00 0.00 0.00 4.58
1856 2132 8.928733 CATTCAAATTCTTTCAGGTTGTAATGG 58.071 33.333 0.00 0.00 0.00 3.16
1866 2142 9.754382 TCTCTTTTTCCATTCAAATTCTTTCAG 57.246 29.630 0.00 0.00 0.00 3.02
1902 2178 3.131577 GGCCAAATGAAATCAGATGCTGA 59.868 43.478 0.00 0.00 44.99 4.26
1904 2180 3.132289 CAGGCCAAATGAAATCAGATGCT 59.868 43.478 5.01 0.00 0.00 3.79
1905 2181 3.131577 TCAGGCCAAATGAAATCAGATGC 59.868 43.478 5.01 0.00 0.00 3.91
1923 2199 7.933577 TGCCATCAGTAGTATAAAAATCTCAGG 59.066 37.037 0.00 0.00 0.00 3.86
1935 2211 3.452264 TCTGCAGTTGCCATCAGTAGTAT 59.548 43.478 14.67 0.00 41.18 2.12
1941 2217 0.677098 AGCTCTGCAGTTGCCATCAG 60.677 55.000 23.33 9.87 41.18 2.90
1943 2219 1.375098 GGAGCTCTGCAGTTGCCATC 61.375 60.000 23.33 17.32 41.18 3.51
1945 2221 2.033141 GGAGCTCTGCAGTTGCCA 59.967 61.111 23.33 1.85 41.18 4.92
1946 2222 2.033141 TGGAGCTCTGCAGTTGCC 59.967 61.111 23.33 16.66 41.18 4.52
1960 2244 2.607750 GGCTCCTGGGTCTGTGGA 60.608 66.667 0.00 0.00 0.00 4.02
2035 2322 4.332543 CGGCATGAAAACTTACAGCATCTA 59.667 41.667 0.00 0.00 0.00 1.98
2055 2342 2.227865 GGTCTCTCAGAGATACATCGGC 59.772 54.545 7.89 0.00 40.98 5.54
2076 2363 1.556911 ACCTAGAACTGCATCCACAGG 59.443 52.381 0.00 0.00 42.21 4.00
2087 2374 2.379972 ACTATCTGCGCACCTAGAACT 58.620 47.619 22.07 2.90 0.00 3.01
2129 2416 0.546747 AACCATCTTCCACCTCGGGA 60.547 55.000 0.00 0.00 34.36 5.14
2135 2422 1.202879 TGACCACAACCATCTTCCACC 60.203 52.381 0.00 0.00 0.00 4.61
2148 2435 0.250684 ATGGCATGAACGTGACCACA 60.251 50.000 0.00 0.00 31.41 4.17
2198 2485 8.762481 ATATTAGGGAAATCACCTTGTTAACC 57.238 34.615 2.48 0.00 39.54 2.85
2239 2526 5.278873 TCTGTGGGTAGTAGAGAGTAGAGA 58.721 45.833 0.00 0.00 0.00 3.10
2240 2527 5.617528 TCTGTGGGTAGTAGAGAGTAGAG 57.382 47.826 0.00 0.00 0.00 2.43
2241 2528 6.409464 GGATTCTGTGGGTAGTAGAGAGTAGA 60.409 46.154 0.00 0.00 0.00 2.59
2242 2529 5.766174 GGATTCTGTGGGTAGTAGAGAGTAG 59.234 48.000 0.00 0.00 0.00 2.57
2243 2530 5.193124 TGGATTCTGTGGGTAGTAGAGAGTA 59.807 44.000 0.00 0.00 0.00 2.59
2244 2531 4.017407 TGGATTCTGTGGGTAGTAGAGAGT 60.017 45.833 0.00 0.00 0.00 3.24
2245 2532 4.537751 TGGATTCTGTGGGTAGTAGAGAG 58.462 47.826 0.00 0.00 0.00 3.20
2246 2533 4.603094 TGGATTCTGTGGGTAGTAGAGA 57.397 45.455 0.00 0.00 0.00 3.10
2329 2617 0.521735 GGGGCATCGAGAACAAACAC 59.478 55.000 0.00 0.00 0.00 3.32
2438 2730 1.134007 CAGCCCATCTGCATCCTGTTA 60.134 52.381 0.00 0.00 35.78 2.41
2441 2733 0.471191 TACAGCCCATCTGCATCCTG 59.529 55.000 0.00 0.00 46.76 3.86
2517 2809 4.385825 TGAACGTTTCCTGCTATCTGTTT 58.614 39.130 0.46 0.00 0.00 2.83
2566 2858 2.820787 GGTAGATCCCAGATCGAACGAT 59.179 50.000 9.46 9.46 37.59 3.73
2594 5157 3.945285 ACCGCAATATTAAACTGACCCTG 59.055 43.478 0.00 0.00 0.00 4.45
2596 5159 3.314357 GGACCGCAATATTAAACTGACCC 59.686 47.826 0.00 0.00 0.00 4.46
2605 5168 9.733556 AGTCATATAATTTGGACCGCAATATTA 57.266 29.630 0.00 0.00 0.00 0.98
2714 5560 5.890334 TCTTTTCAATTTATTAGGGCTGCG 58.110 37.500 0.00 0.00 0.00 5.18
2745 5591 2.160721 ATGGGTCCGATCAGTAGTGT 57.839 50.000 0.00 0.00 0.00 3.55
2771 5617 4.549458 CAAAGCACCTTGGATTGTACAAG 58.451 43.478 14.65 1.64 43.73 3.16
2772 5618 3.243704 GCAAAGCACCTTGGATTGTACAA 60.244 43.478 11.41 11.41 0.00 2.41
2773 5619 2.295909 GCAAAGCACCTTGGATTGTACA 59.704 45.455 0.00 0.00 0.00 2.90
2774 5620 2.668279 CGCAAAGCACCTTGGATTGTAC 60.668 50.000 0.00 0.00 0.00 2.90
2775 5621 1.539388 CGCAAAGCACCTTGGATTGTA 59.461 47.619 0.00 0.00 0.00 2.41
2776 5622 0.314935 CGCAAAGCACCTTGGATTGT 59.685 50.000 0.00 0.00 0.00 2.71
2777 5623 0.388907 CCGCAAAGCACCTTGGATTG 60.389 55.000 0.00 0.00 0.00 2.67
2778 5624 0.539438 TCCGCAAAGCACCTTGGATT 60.539 50.000 0.00 0.00 0.00 3.01
2779 5625 0.962356 CTCCGCAAAGCACCTTGGAT 60.962 55.000 0.00 0.00 0.00 3.41
2780 5626 1.600636 CTCCGCAAAGCACCTTGGA 60.601 57.895 0.00 0.00 0.00 3.53
2781 5627 2.629656 CCTCCGCAAAGCACCTTGG 61.630 63.158 0.00 0.00 0.00 3.61
2782 5628 1.898574 ACCTCCGCAAAGCACCTTG 60.899 57.895 0.00 0.00 0.00 3.61
2783 5629 1.898574 CACCTCCGCAAAGCACCTT 60.899 57.895 0.00 0.00 0.00 3.50
2784 5630 2.281761 CACCTCCGCAAAGCACCT 60.282 61.111 0.00 0.00 0.00 4.00
2785 5631 4.043200 GCACCTCCGCAAAGCACC 62.043 66.667 0.00 0.00 0.00 5.01
2786 5632 1.234615 TAAGCACCTCCGCAAAGCAC 61.235 55.000 0.00 0.00 0.00 4.40
2787 5633 0.955428 CTAAGCACCTCCGCAAAGCA 60.955 55.000 0.00 0.00 0.00 3.91
2788 5634 0.673644 TCTAAGCACCTCCGCAAAGC 60.674 55.000 0.00 0.00 0.00 3.51
2789 5635 1.066858 TCTCTAAGCACCTCCGCAAAG 60.067 52.381 0.00 0.00 0.00 2.77
2790 5636 0.973632 TCTCTAAGCACCTCCGCAAA 59.026 50.000 0.00 0.00 0.00 3.68
2791 5637 0.973632 TTCTCTAAGCACCTCCGCAA 59.026 50.000 0.00 0.00 0.00 4.85
2792 5638 0.973632 TTTCTCTAAGCACCTCCGCA 59.026 50.000 0.00 0.00 0.00 5.69
2793 5639 2.317530 ATTTCTCTAAGCACCTCCGC 57.682 50.000 0.00 0.00 0.00 5.54
2794 5640 6.049149 TGATTTATTTCTCTAAGCACCTCCG 58.951 40.000 0.00 0.00 0.00 4.63
2795 5641 7.770897 TCTTGATTTATTTCTCTAAGCACCTCC 59.229 37.037 0.00 0.00 0.00 4.30
2796 5642 8.723942 TCTTGATTTATTTCTCTAAGCACCTC 57.276 34.615 0.00 0.00 0.00 3.85
2797 5643 9.692325 AATCTTGATTTATTTCTCTAAGCACCT 57.308 29.630 0.00 0.00 0.00 4.00
2809 5655 9.875691 GGTGCTTAGGAAAATCTTGATTTATTT 57.124 29.630 8.75 0.00 0.00 1.40
2810 5656 8.190784 CGGTGCTTAGGAAAATCTTGATTTATT 58.809 33.333 8.75 0.00 0.00 1.40
2811 5657 7.201821 CCGGTGCTTAGGAAAATCTTGATTTAT 60.202 37.037 8.75 2.53 0.00 1.40
2812 5658 6.094881 CCGGTGCTTAGGAAAATCTTGATTTA 59.905 38.462 8.75 0.00 0.00 1.40
2813 5659 5.105756 CCGGTGCTTAGGAAAATCTTGATTT 60.106 40.000 0.00 3.04 0.00 2.17
2814 5660 4.399303 CCGGTGCTTAGGAAAATCTTGATT 59.601 41.667 0.00 0.00 0.00 2.57
2815 5661 3.947834 CCGGTGCTTAGGAAAATCTTGAT 59.052 43.478 0.00 0.00 0.00 2.57
2816 5662 3.244770 ACCGGTGCTTAGGAAAATCTTGA 60.245 43.478 6.12 0.00 0.00 3.02
2817 5663 3.081804 ACCGGTGCTTAGGAAAATCTTG 58.918 45.455 6.12 0.00 0.00 3.02
2818 5664 3.081804 CACCGGTGCTTAGGAAAATCTT 58.918 45.455 24.02 0.00 0.00 2.40
2819 5665 2.711542 CACCGGTGCTTAGGAAAATCT 58.288 47.619 24.02 0.00 0.00 2.40
2832 5678 3.564511 CTTGAACAAATAAGCACCGGTG 58.435 45.455 30.66 30.66 0.00 4.94
2833 5679 2.556622 CCTTGAACAAATAAGCACCGGT 59.443 45.455 0.00 0.00 0.00 5.28
2834 5680 2.556622 ACCTTGAACAAATAAGCACCGG 59.443 45.455 0.00 0.00 0.00 5.28
2835 5681 3.915437 ACCTTGAACAAATAAGCACCG 57.085 42.857 0.00 0.00 0.00 4.94
2836 5682 6.555315 CATCTACCTTGAACAAATAAGCACC 58.445 40.000 0.00 0.00 0.00 5.01
2837 5683 6.030228 GCATCTACCTTGAACAAATAAGCAC 58.970 40.000 0.00 0.00 0.00 4.40
2838 5684 5.945784 AGCATCTACCTTGAACAAATAAGCA 59.054 36.000 0.00 0.00 0.00 3.91
2839 5685 6.442513 AGCATCTACCTTGAACAAATAAGC 57.557 37.500 0.00 0.00 0.00 3.09
2844 5690 9.733556 TCTAATTAAGCATCTACCTTGAACAAA 57.266 29.630 0.00 0.00 0.00 2.83
2845 5691 9.905713 ATCTAATTAAGCATCTACCTTGAACAA 57.094 29.630 0.00 0.00 0.00 2.83
2846 5692 9.330063 CATCTAATTAAGCATCTACCTTGAACA 57.670 33.333 0.00 0.00 0.00 3.18
2847 5693 9.331282 ACATCTAATTAAGCATCTACCTTGAAC 57.669 33.333 0.00 0.00 0.00 3.18
2848 5694 9.547753 GACATCTAATTAAGCATCTACCTTGAA 57.452 33.333 0.00 0.00 0.00 2.69
2849 5695 8.928448 AGACATCTAATTAAGCATCTACCTTGA 58.072 33.333 0.00 0.00 0.00 3.02
2850 5696 9.202273 GAGACATCTAATTAAGCATCTACCTTG 57.798 37.037 0.00 0.00 0.00 3.61
2851 5697 9.153479 AGAGACATCTAATTAAGCATCTACCTT 57.847 33.333 0.00 0.00 32.54 3.50
2852 5698 8.719645 AGAGACATCTAATTAAGCATCTACCT 57.280 34.615 0.00 0.00 32.54 3.08
2853 5699 9.418045 GAAGAGACATCTAATTAAGCATCTACC 57.582 37.037 0.00 0.00 33.45 3.18
2856 5702 8.703743 ACAGAAGAGACATCTAATTAAGCATCT 58.296 33.333 0.00 0.00 33.45 2.90
2857 5703 8.885494 ACAGAAGAGACATCTAATTAAGCATC 57.115 34.615 0.00 0.00 33.45 3.91
2858 5704 9.979578 CTACAGAAGAGACATCTAATTAAGCAT 57.020 33.333 0.00 0.00 33.45 3.79
2859 5705 9.190317 TCTACAGAAGAGACATCTAATTAAGCA 57.810 33.333 0.00 0.00 33.45 3.91
2871 5717 9.698309 CTGAGTTTTATTTCTACAGAAGAGACA 57.302 33.333 0.00 0.00 35.05 3.41
2872 5718 9.699703 ACTGAGTTTTATTTCTACAGAAGAGAC 57.300 33.333 0.00 0.00 35.05 3.36
2889 5735 9.529325 GGTGCTTAGAAAAATAAACTGAGTTTT 57.471 29.630 16.49 0.00 37.01 2.43
2890 5736 8.914011 AGGTGCTTAGAAAAATAAACTGAGTTT 58.086 29.630 15.57 15.57 39.24 2.66
2891 5737 8.465273 AGGTGCTTAGAAAAATAAACTGAGTT 57.535 30.769 0.00 0.00 0.00 3.01
2892 5738 9.220767 CTAGGTGCTTAGAAAAATAAACTGAGT 57.779 33.333 0.00 0.00 0.00 3.41
2893 5739 8.178313 GCTAGGTGCTTAGAAAAATAAACTGAG 58.822 37.037 0.00 0.00 38.95 3.35
2894 5740 7.663905 TGCTAGGTGCTTAGAAAAATAAACTGA 59.336 33.333 0.00 0.00 43.37 3.41
2895 5741 7.816640 TGCTAGGTGCTTAGAAAAATAAACTG 58.183 34.615 0.00 0.00 43.37 3.16
2896 5742 7.996098 TGCTAGGTGCTTAGAAAAATAAACT 57.004 32.000 0.00 0.00 43.37 2.66
2897 5743 9.076596 CAATGCTAGGTGCTTAGAAAAATAAAC 57.923 33.333 0.00 0.00 43.37 2.01
2898 5744 8.802267 ACAATGCTAGGTGCTTAGAAAAATAAA 58.198 29.630 0.00 0.00 43.37 1.40
2899 5745 8.348285 ACAATGCTAGGTGCTTAGAAAAATAA 57.652 30.769 0.00 0.00 43.37 1.40
2900 5746 7.938140 ACAATGCTAGGTGCTTAGAAAAATA 57.062 32.000 0.00 0.00 43.37 1.40
2901 5747 6.840780 ACAATGCTAGGTGCTTAGAAAAAT 57.159 33.333 0.00 0.00 43.37 1.82
2902 5748 6.648879 AACAATGCTAGGTGCTTAGAAAAA 57.351 33.333 0.00 0.00 43.37 1.94
2903 5749 7.229707 TGTTAACAATGCTAGGTGCTTAGAAAA 59.770 33.333 5.64 0.00 43.37 2.29
2904 5750 6.712998 TGTTAACAATGCTAGGTGCTTAGAAA 59.287 34.615 5.64 0.00 43.37 2.52
2905 5751 6.234920 TGTTAACAATGCTAGGTGCTTAGAA 58.765 36.000 5.64 0.00 43.37 2.10
2906 5752 5.800296 TGTTAACAATGCTAGGTGCTTAGA 58.200 37.500 5.64 0.00 43.37 2.10
2907 5753 6.371548 TCTTGTTAACAATGCTAGGTGCTTAG 59.628 38.462 20.83 4.83 43.37 2.18
2908 5754 6.148811 GTCTTGTTAACAATGCTAGGTGCTTA 59.851 38.462 20.83 0.00 43.37 3.09
2909 5755 5.048713 GTCTTGTTAACAATGCTAGGTGCTT 60.049 40.000 20.83 0.00 43.37 3.91
2910 5756 4.455877 GTCTTGTTAACAATGCTAGGTGCT 59.544 41.667 20.83 0.00 43.37 4.40
2911 5757 4.455877 AGTCTTGTTAACAATGCTAGGTGC 59.544 41.667 20.83 6.80 43.25 5.01
2912 5758 5.470098 ACAGTCTTGTTAACAATGCTAGGTG 59.530 40.000 20.83 13.20 32.28 4.00
2913 5759 5.621193 ACAGTCTTGTTAACAATGCTAGGT 58.379 37.500 20.83 13.08 32.28 3.08
2914 5760 6.560253 AACAGTCTTGTTAACAATGCTAGG 57.440 37.500 20.83 8.82 45.45 3.02
2929 5775 6.867550 TGATACTGATTCATCGAACAGTCTT 58.132 36.000 12.91 5.89 42.39 3.01
3027 6564 3.712733 AGATACGGGGTGGCTAATTAACA 59.287 43.478 0.00 0.00 0.00 2.41
3028 6565 4.347360 AGATACGGGGTGGCTAATTAAC 57.653 45.455 0.00 0.00 0.00 2.01
3039 6576 2.355986 TGCAGCGAAGATACGGGGT 61.356 57.895 0.00 0.00 0.00 4.95
3043 6580 2.798680 ACTTAGTGCAGCGAAGATACG 58.201 47.619 13.18 0.00 34.51 3.06
3171 6712 2.426522 TGTTCGATGAAGCCAGAAAGG 58.573 47.619 0.00 0.00 41.84 3.11
3208 6749 2.169352 AGACATGGTTGATTCCTCCGAG 59.831 50.000 0.00 0.00 0.00 4.63
3254 6795 2.847327 TTCAGCAGAACAAGGAGGAG 57.153 50.000 0.00 0.00 0.00 3.69
3325 6866 1.689273 ACGATAGGCAGACTGAATCCC 59.311 52.381 6.65 0.00 43.77 3.85
3380 6921 3.777925 CGTGAGGTTCGCGCCAAG 61.778 66.667 0.00 0.00 43.59 3.61
3506 7047 2.290768 ACTGCATCCAAGTCAGATTGCT 60.291 45.455 0.00 0.00 0.00 3.91
3581 7122 1.295423 GCTTGTAGCGAGGGGACAA 59.705 57.895 0.00 0.00 0.00 3.18
3582 7123 1.911269 TGCTTGTAGCGAGGGGACA 60.911 57.895 0.00 0.00 46.26 4.02
3650 7191 1.192146 TAGAAGCTGCACCGGTTCCT 61.192 55.000 2.97 0.00 41.12 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.