Multiple sequence alignment - TraesCS2D01G115900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G115900 chr2D 100.000 3120 0 0 1 3120 64192526 64189407 0.000000e+00 5762.0
1 TraesCS2D01G115900 chr2D 90.000 50 5 0 463 512 36748719 36748670 7.220000e-07 65.8
2 TraesCS2D01G115900 chr2A 93.721 2628 128 19 501 3120 65674757 65672159 0.000000e+00 3904.0
3 TraesCS2D01G115900 chr2A 89.348 460 42 7 7 461 65675218 65674761 3.490000e-159 571.0
4 TraesCS2D01G115900 chr2A 86.364 66 7 2 462 526 605168561 605168497 1.550000e-08 71.3
5 TraesCS2D01G115900 chr2A 91.837 49 2 2 460 507 581481416 581481369 2.010000e-07 67.6
6 TraesCS2D01G115900 chr2A 88.889 54 4 2 464 516 2340207 2340259 7.220000e-07 65.8
7 TraesCS2D01G115900 chr2B 93.398 2484 128 21 372 2832 100343896 100341426 0.000000e+00 3646.0
8 TraesCS2D01G115900 chr2B 93.750 336 21 0 1 336 100344237 100343902 3.590000e-139 505.0
9 TraesCS2D01G115900 chr2B 94.977 219 10 1 2869 3087 100341425 100341208 2.980000e-90 342.0
10 TraesCS2D01G115900 chr2B 77.174 276 46 13 1001 1269 29005775 29005510 9.020000e-31 145.0
11 TraesCS2D01G115900 chr2B 89.796 49 5 0 460 508 225436036 225436084 2.600000e-06 63.9
12 TraesCS2D01G115900 chr4A 79.038 291 48 11 988 1269 211000041 211000327 1.480000e-43 187.0
13 TraesCS2D01G115900 chr4D 78.840 293 46 11 985 1269 291737042 291736758 1.910000e-42 183.0
14 TraesCS2D01G115900 chr4B 77.397 292 49 13 985 1269 273688356 273688637 1.160000e-34 158.0
15 TraesCS2D01G115900 chr4B 76.897 290 54 10 985 1269 565112011 565112292 5.390000e-33 152.0
16 TraesCS2D01G115900 chr7B 84.722 144 22 0 1126 1269 613375179 613375036 9.020000e-31 145.0
17 TraesCS2D01G115900 chr7B 76.207 290 56 10 985 1269 709129001 709129282 1.170000e-29 141.0
18 TraesCS2D01G115900 chr5B 97.619 42 1 0 460 501 259541744 259541703 4.320000e-09 73.1
19 TraesCS2D01G115900 chr5B 100.000 37 0 0 460 496 8543965 8543929 5.580000e-08 69.4
20 TraesCS2D01G115900 chr1A 100.000 37 0 0 460 496 572016786 572016822 5.580000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G115900 chr2D 64189407 64192526 3119 True 5762.000000 5762 100.000000 1 3120 1 chr2D.!!$R2 3119
1 TraesCS2D01G115900 chr2A 65672159 65675218 3059 True 2237.500000 3904 91.534500 7 3120 2 chr2A.!!$R3 3113
2 TraesCS2D01G115900 chr2B 100341208 100344237 3029 True 1497.666667 3646 94.041667 1 3087 3 chr2B.!!$R2 3086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 360 0.249699 AGAATGCGTGTGGTCGTTGA 60.250 50.0 0.0 0.0 0.00 3.18 F
797 804 0.595825 GTTGCACAGTTTCCTGCTGC 60.596 55.0 0.0 0.0 42.81 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1460 2.754472 GGTTTGACCAATGCAAAGGAC 58.246 47.619 14.09 8.73 38.42 3.85 R
2700 2714 3.135712 ACATCTCCCACAGTAACACACAA 59.864 43.478 0.00 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.129502 CTCCGCCGAGGTACGTCA 61.130 66.667 15.36 0.00 41.99 4.35
57 58 1.210931 CCATCCACTGTTTGCGCTG 59.789 57.895 9.73 0.00 0.00 5.18
92 93 3.001330 CCATCTTAATTTGCCGTCGAGTC 59.999 47.826 0.00 0.00 0.00 3.36
149 150 8.581578 TGTCCTACATTTATACGATTAGCATCA 58.418 33.333 0.00 0.00 0.00 3.07
230 231 1.630126 GCCCAGAGGATGCCAGAGAA 61.630 60.000 0.00 0.00 33.47 2.87
234 236 2.015587 CAGAGGATGCCAGAGAAAAGC 58.984 52.381 0.00 0.00 0.00 3.51
256 259 4.760204 GCGATAGGGTTTATGGCTGTAATT 59.240 41.667 0.00 0.00 0.00 1.40
354 360 0.249699 AGAATGCGTGTGGTCGTTGA 60.250 50.000 0.00 0.00 0.00 3.18
387 393 7.513371 ACTTCGTATAGAACCTAGAGGATTG 57.487 40.000 1.60 0.00 38.94 2.67
388 394 6.490721 ACTTCGTATAGAACCTAGAGGATTGG 59.509 42.308 1.60 0.00 38.94 3.16
409 415 1.334384 GGCTGGTTGGGTGTTTGGTT 61.334 55.000 0.00 0.00 0.00 3.67
416 422 4.469945 TGGTTGGGTGTTTGGTTGAATTTA 59.530 37.500 0.00 0.00 0.00 1.40
580 587 1.269517 GCAACAAAGACGCCAAATCCA 60.270 47.619 0.00 0.00 0.00 3.41
628 635 4.888326 ATGCTTGCCTGGTTTTTATTCA 57.112 36.364 0.00 0.00 0.00 2.57
686 693 6.223852 ACTGATCAACGTGACTGATAAAACT 58.776 36.000 1.29 0.00 33.63 2.66
721 728 9.981114 CCTTTTAGTAAAACATTCTTCAATGGT 57.019 29.630 3.88 0.00 42.14 3.55
743 750 5.867174 GGTAATTGGACCAGAAAATTTTCCG 59.133 40.000 24.01 15.78 39.51 4.30
764 771 1.476845 TTTGGCCGCTAGTGGTCTGA 61.477 55.000 26.44 13.22 33.69 3.27
769 776 1.941325 CCGCTAGTGGTCTGATTTCC 58.059 55.000 14.58 0.00 0.00 3.13
783 790 3.342719 TGATTTCCGAAGCTATGTTGCA 58.657 40.909 0.00 0.00 34.99 4.08
789 796 2.226437 CCGAAGCTATGTTGCACAGTTT 59.774 45.455 0.00 0.00 34.99 2.66
791 798 3.667960 CGAAGCTATGTTGCACAGTTTCC 60.668 47.826 0.00 0.00 34.99 3.13
793 800 2.816087 AGCTATGTTGCACAGTTTCCTG 59.184 45.455 0.00 0.00 44.68 3.86
797 804 0.595825 GTTGCACAGTTTCCTGCTGC 60.596 55.000 0.00 0.00 42.81 5.25
1053 1062 4.631234 TCTATGTCCCAAGGAAGTGGTAT 58.369 43.478 0.00 0.00 36.90 2.73
1062 1071 6.617784 TCCCAAGGAAGTGGTATGTATTGATA 59.382 38.462 0.00 0.00 36.90 2.15
1448 1460 7.332926 ACATGCTGTCAGTAGTTTCTTAAGATG 59.667 37.037 5.89 0.44 0.00 2.90
1511 1523 7.067615 TCTCTATTCTGTACACATTGAGTCCTC 59.932 40.741 15.50 0.00 0.00 3.71
1688 1700 7.470289 AGCTTCTTTTATCTGCAGTTATACG 57.530 36.000 14.67 3.25 0.00 3.06
2130 2143 2.826128 TCAAGCAGTAGATGAGTTCCGT 59.174 45.455 0.00 0.00 0.00 4.69
2181 2194 7.933728 TTATGAAACCGCTTTAAACCTTTTC 57.066 32.000 0.00 0.00 0.00 2.29
2183 2196 5.584442 TGAAACCGCTTTAAACCTTTTCTC 58.416 37.500 0.00 0.00 0.00 2.87
2428 2442 5.012239 TGGATTATTGTGCTTGCTTTCTCT 58.988 37.500 0.00 0.00 0.00 3.10
2551 2565 3.535590 TGGGGGAGATCCATAAAAATGGT 59.464 43.478 0.47 0.00 42.28 3.55
2552 2566 4.015730 TGGGGGAGATCCATAAAAATGGTT 60.016 41.667 0.47 0.00 42.28 3.67
2613 2627 4.415596 TCAACCAGTGGCTTATTCCAAAT 58.584 39.130 9.78 0.00 37.96 2.32
2705 2719 4.691175 TGTGCAAAAGCAACATATTGTGT 58.309 34.783 0.00 0.00 44.84 3.72
2706 2720 4.507021 TGTGCAAAAGCAACATATTGTGTG 59.493 37.500 0.00 0.00 41.14 3.82
2708 2722 5.006552 GTGCAAAAGCAACATATTGTGTGTT 59.993 36.000 0.00 0.00 41.14 3.32
2710 2724 6.199908 TGCAAAAGCAACATATTGTGTGTTAC 59.800 34.615 0.00 0.00 41.14 2.50
2712 2726 7.567409 GCAAAAGCAACATATTGTGTGTTACTG 60.567 37.037 0.00 0.00 41.14 2.74
2714 2728 6.000891 AGCAACATATTGTGTGTTACTGTG 57.999 37.500 0.00 0.00 41.14 3.66
2715 2729 5.048782 AGCAACATATTGTGTGTTACTGTGG 60.049 40.000 0.00 0.00 41.14 4.17
2716 2730 5.698832 CAACATATTGTGTGTTACTGTGGG 58.301 41.667 0.00 0.00 41.14 4.61
2717 2731 5.235850 ACATATTGTGTGTTACTGTGGGA 57.764 39.130 0.00 0.00 40.28 4.37
2725 2739 4.021368 GTGTGTTACTGTGGGAGATGTAGT 60.021 45.833 0.00 0.00 0.00 2.73
2743 2774 8.143193 AGATGTAGTCTGATGAGCTATTTGAAG 58.857 37.037 0.00 0.00 35.31 3.02
2748 2779 7.164122 AGTCTGATGAGCTATTTGAAGAACAA 58.836 34.615 0.00 0.00 36.65 2.83
2797 2828 6.540551 TGCATTTAAAACTCAAAAGAAACCCC 59.459 34.615 0.00 0.00 0.00 4.95
2811 2842 5.687166 AGAAACCCCGTTAGAACATCATA 57.313 39.130 0.00 0.00 0.00 2.15
2832 2899 6.272792 TCATAAGCCCCCGGTAGATAAAATTA 59.727 38.462 0.00 0.00 0.00 1.40
2833 2900 5.391577 AAGCCCCCGGTAGATAAAATTAA 57.608 39.130 0.00 0.00 0.00 1.40
2834 2901 4.722220 AGCCCCCGGTAGATAAAATTAAC 58.278 43.478 0.00 0.00 0.00 2.01
2835 2902 4.166531 AGCCCCCGGTAGATAAAATTAACA 59.833 41.667 0.00 0.00 0.00 2.41
2836 2903 5.074804 GCCCCCGGTAGATAAAATTAACAT 58.925 41.667 0.00 0.00 0.00 2.71
2837 2904 6.044637 AGCCCCCGGTAGATAAAATTAACATA 59.955 38.462 0.00 0.00 0.00 2.29
2838 2905 6.716173 GCCCCCGGTAGATAAAATTAACATAA 59.284 38.462 0.00 0.00 0.00 1.90
2839 2906 7.395206 GCCCCCGGTAGATAAAATTAACATAAT 59.605 37.037 0.00 0.00 0.00 1.28
2840 2907 9.304335 CCCCCGGTAGATAAAATTAACATAATT 57.696 33.333 0.00 0.00 0.00 1.40
2863 2930 8.647143 ATTTTGTTTCTAGATGGTTTGTTGTG 57.353 30.769 0.00 0.00 0.00 3.33
2864 2931 6.767524 TTGTTTCTAGATGGTTTGTTGTGT 57.232 33.333 0.00 0.00 0.00 3.72
2865 2932 6.767524 TGTTTCTAGATGGTTTGTTGTGTT 57.232 33.333 0.00 0.00 0.00 3.32
2866 2933 7.164230 TGTTTCTAGATGGTTTGTTGTGTTT 57.836 32.000 0.00 0.00 0.00 2.83
2867 2934 8.282455 TGTTTCTAGATGGTTTGTTGTGTTTA 57.718 30.769 0.00 0.00 0.00 2.01
2908 2975 2.098117 GCAAGCTGCTATAACTGTTGGG 59.902 50.000 0.90 0.00 40.96 4.12
3058 3125 0.319405 AAAATCCAGGTTGCAGCTGC 59.681 50.000 31.89 31.89 42.05 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.031111 TCTGGGGAGGATGGAATCGT 60.031 55.000 0.00 0.00 46.86 3.73
57 58 0.181350 AAGATGGGGCGAGATTGTCC 59.819 55.000 0.00 0.00 0.00 4.02
92 93 0.319040 CAGATACAGGTCCGGCGATG 60.319 60.000 9.30 4.00 0.00 3.84
149 150 2.422479 TCACGCGTAGACAATTCTAGCT 59.578 45.455 13.44 0.00 34.84 3.32
230 231 3.214328 CAGCCATAAACCCTATCGCTTT 58.786 45.455 0.00 0.00 0.00 3.51
234 236 6.231211 AGAATTACAGCCATAAACCCTATCG 58.769 40.000 0.00 0.00 0.00 2.92
279 282 6.377146 ACTGGCACTAAACAATCGGAAATTAT 59.623 34.615 0.00 0.00 0.00 1.28
296 299 2.297701 CAAACAACTACCACTGGCACT 58.702 47.619 0.00 0.00 0.00 4.40
381 387 1.693640 CCAACCAGCCTCCAATCCT 59.306 57.895 0.00 0.00 0.00 3.24
387 393 1.152546 AAACACCCAACCAGCCTCC 60.153 57.895 0.00 0.00 0.00 4.30
388 394 1.463553 CCAAACACCCAACCAGCCTC 61.464 60.000 0.00 0.00 0.00 4.70
409 415 5.421693 CACCTGAACCCATCCAATAAATTCA 59.578 40.000 0.00 0.00 0.00 2.57
416 422 0.336048 CCCACCTGAACCCATCCAAT 59.664 55.000 0.00 0.00 0.00 3.16
580 587 5.859205 GGAGCCATTGATCCAAAATAACT 57.141 39.130 0.00 0.00 46.65 2.24
660 667 7.542477 AGTTTTATCAGTCACGTTGATCAGTAG 59.458 37.037 4.53 0.00 36.68 2.57
701 708 9.927668 CCAATTACCATTGAAGAATGTTTTACT 57.072 29.630 0.00 0.00 42.35 2.24
743 750 2.033602 ACCACTAGCGGCCAAACC 59.966 61.111 2.24 0.00 0.00 3.27
757 764 3.197766 ACATAGCTTCGGAAATCAGACCA 59.802 43.478 0.00 0.00 0.00 4.02
764 771 3.081061 TGTGCAACATAGCTTCGGAAAT 58.919 40.909 0.00 0.00 45.67 2.17
811 818 5.885912 TCTCCTGTGGTTTATTCCAAATAGC 59.114 40.000 0.00 0.00 39.34 2.97
1062 1071 7.033791 CAGTACTGTAACCAAGACGACAATAT 58.966 38.462 15.06 0.00 0.00 1.28
1448 1460 2.754472 GGTTTGACCAATGCAAAGGAC 58.246 47.619 14.09 8.73 38.42 3.85
1496 1508 5.789521 TGAAATTCGAGGACTCAATGTGTA 58.210 37.500 0.00 0.00 0.00 2.90
1511 1523 6.801862 AGAAGAAAAATTACCGCTGAAATTCG 59.198 34.615 0.00 0.00 0.00 3.34
1688 1700 8.126074 TCAAACTGTGTCACATATGTAACAAAC 58.874 33.333 13.53 3.31 0.00 2.93
2130 2143 7.623999 ATCTATCCTAGCAAAATCTTCCTCA 57.376 36.000 0.00 0.00 0.00 3.86
2181 2194 4.494091 ACACCCATAACAGATTCCTGAG 57.506 45.455 0.00 0.00 43.02 3.35
2183 2196 6.460123 GCATAAACACCCATAACAGATTCCTG 60.460 42.308 0.00 0.00 45.76 3.86
2327 2340 5.295292 CAGGAAGCATATTACACCAAGTCTG 59.705 44.000 0.00 0.00 0.00 3.51
2428 2442 3.850173 ACAGCCCCTTCTCCAACTTATTA 59.150 43.478 0.00 0.00 0.00 0.98
2591 2605 3.517296 TTGGAATAAGCCACTGGTTGA 57.483 42.857 0.00 0.00 37.75 3.18
2697 2711 5.755409 TCTCCCACAGTAACACACAATAT 57.245 39.130 0.00 0.00 0.00 1.28
2700 2714 3.135712 ACATCTCCCACAGTAACACACAA 59.864 43.478 0.00 0.00 0.00 3.33
2702 2716 3.402628 ACATCTCCCACAGTAACACAC 57.597 47.619 0.00 0.00 0.00 3.82
2705 2719 4.462834 CAGACTACATCTCCCACAGTAACA 59.537 45.833 0.00 0.00 34.41 2.41
2706 2720 4.705507 TCAGACTACATCTCCCACAGTAAC 59.294 45.833 0.00 0.00 34.41 2.50
2708 2722 4.586306 TCAGACTACATCTCCCACAGTA 57.414 45.455 0.00 0.00 34.41 2.74
2710 2724 3.956848 TCATCAGACTACATCTCCCACAG 59.043 47.826 0.00 0.00 34.41 3.66
2712 2726 3.243704 GCTCATCAGACTACATCTCCCAC 60.244 52.174 0.00 0.00 34.41 4.61
2714 2728 3.230134 AGCTCATCAGACTACATCTCCC 58.770 50.000 0.00 0.00 34.41 4.30
2715 2729 6.588719 AATAGCTCATCAGACTACATCTCC 57.411 41.667 0.00 0.00 34.41 3.71
2716 2730 7.656412 TCAAATAGCTCATCAGACTACATCTC 58.344 38.462 0.00 0.00 34.41 2.75
2717 2731 7.594351 TCAAATAGCTCATCAGACTACATCT 57.406 36.000 0.00 0.00 38.66 2.90
2725 2739 7.984422 TTTGTTCTTCAAATAGCTCATCAGA 57.016 32.000 0.00 0.00 40.56 3.27
2743 2774 3.381590 AGTTTCCTGTGAGCCTTTTGTTC 59.618 43.478 0.00 0.00 0.00 3.18
2748 2779 3.857157 TGTAGTTTCCTGTGAGCCTTT 57.143 42.857 0.00 0.00 0.00 3.11
2797 2828 3.139077 GGGGGCTTATGATGTTCTAACG 58.861 50.000 0.00 0.00 0.00 3.18
2811 2842 3.965470 AATTTTATCTACCGGGGGCTT 57.035 42.857 6.32 0.00 0.00 4.35
2837 2904 9.097257 CACAACAAACCATCTAGAAACAAAATT 57.903 29.630 0.00 0.00 0.00 1.82
2838 2905 8.257306 ACACAACAAACCATCTAGAAACAAAAT 58.743 29.630 0.00 0.00 0.00 1.82
2839 2906 7.607250 ACACAACAAACCATCTAGAAACAAAA 58.393 30.769 0.00 0.00 0.00 2.44
2840 2907 7.164230 ACACAACAAACCATCTAGAAACAAA 57.836 32.000 0.00 0.00 0.00 2.83
2841 2908 6.767524 ACACAACAAACCATCTAGAAACAA 57.232 33.333 0.00 0.00 0.00 2.83
2842 2909 6.767524 AACACAACAAACCATCTAGAAACA 57.232 33.333 0.00 0.00 0.00 2.83
2843 2910 7.378728 GCTAAACACAACAAACCATCTAGAAAC 59.621 37.037 0.00 0.00 0.00 2.78
2844 2911 7.422399 GCTAAACACAACAAACCATCTAGAAA 58.578 34.615 0.00 0.00 0.00 2.52
2845 2912 6.016610 GGCTAAACACAACAAACCATCTAGAA 60.017 38.462 0.00 0.00 0.00 2.10
2846 2913 5.472137 GGCTAAACACAACAAACCATCTAGA 59.528 40.000 0.00 0.00 0.00 2.43
2847 2914 5.240623 TGGCTAAACACAACAAACCATCTAG 59.759 40.000 0.00 0.00 0.00 2.43
2848 2915 5.133941 TGGCTAAACACAACAAACCATCTA 58.866 37.500 0.00 0.00 0.00 1.98
2849 2916 3.957497 TGGCTAAACACAACAAACCATCT 59.043 39.130 0.00 0.00 0.00 2.90
2850 2917 4.314740 TGGCTAAACACAACAAACCATC 57.685 40.909 0.00 0.00 0.00 3.51
2851 2918 4.161377 ACTTGGCTAAACACAACAAACCAT 59.839 37.500 0.00 0.00 0.00 3.55
2852 2919 3.511934 ACTTGGCTAAACACAACAAACCA 59.488 39.130 0.00 0.00 0.00 3.67
2853 2920 4.118093 ACTTGGCTAAACACAACAAACC 57.882 40.909 0.00 0.00 0.00 3.27
2854 2921 6.500041 TGATACTTGGCTAAACACAACAAAC 58.500 36.000 0.00 0.00 0.00 2.93
2855 2922 6.701145 TGATACTTGGCTAAACACAACAAA 57.299 33.333 0.00 0.00 0.00 2.83
2856 2923 5.278266 GCTGATACTTGGCTAAACACAACAA 60.278 40.000 0.00 0.00 0.00 2.83
2857 2924 4.215399 GCTGATACTTGGCTAAACACAACA 59.785 41.667 0.00 0.00 0.00 3.33
2858 2925 4.215399 TGCTGATACTTGGCTAAACACAAC 59.785 41.667 0.00 0.00 0.00 3.32
2859 2926 4.393834 TGCTGATACTTGGCTAAACACAA 58.606 39.130 0.00 0.00 0.00 3.33
2860 2927 4.002982 CTGCTGATACTTGGCTAAACACA 58.997 43.478 0.00 0.00 0.00 3.72
2861 2928 3.181506 GCTGCTGATACTTGGCTAAACAC 60.182 47.826 0.00 0.00 0.00 3.32
2862 2929 3.009723 GCTGCTGATACTTGGCTAAACA 58.990 45.455 0.00 0.00 0.00 2.83
2863 2930 3.009723 TGCTGCTGATACTTGGCTAAAC 58.990 45.455 0.00 0.00 0.00 2.01
2864 2931 3.348647 TGCTGCTGATACTTGGCTAAA 57.651 42.857 0.00 0.00 0.00 1.85
2865 2932 3.348647 TTGCTGCTGATACTTGGCTAA 57.651 42.857 0.00 0.00 0.00 3.09
2866 2933 3.273434 CTTTGCTGCTGATACTTGGCTA 58.727 45.455 0.00 0.00 0.00 3.93
2867 2934 2.089980 CTTTGCTGCTGATACTTGGCT 58.910 47.619 0.00 0.00 0.00 4.75
3058 3125 2.100584 CTGCTAAGTAGGAGAGCACCTG 59.899 54.545 0.79 0.00 43.52 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.