>input_sequence_60128
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------------------------------------------------ATGCAGAACGAGGTGGGTGATATGGTGGACCT
CTATGTCCCAAGGAAGTGGTATGTATTGATATATTGTCGTCTTGGTTACAGTACTGTGGCATTGCAACCTTGCTCATTCT
TGCTTTGTATTGGTTCCTGCAGCTCTGCCACCAACAGGATCATAACTGCCAAGGACCACGCCTCTGTCCAGATCAACATC
GGGCATGTGGATGCGAATGGACTGTATAATGGCAGTTTCACCACGTTTGCCCTCTCTGGATTCGTCCGCGCCCAGGTGTT
TTACCCTTGCTAT--CCTGACCCCATTTATTTGTCTTAAAGCACACTGTGTGAGTGATCCAGATTCTCCATGTTCTGATT
GTTCTCACGAAATGGGTTGTTTTCT-TTTTTTTGCCTGTCTAGCTGTTTGGAATAATATTTATCATGACATTGACATGCT
GTCAGTAGTTTCTTAAGATGTCCTTTGCATTGGTCAAACCAGTAACTCTTTAGTATTCTCTATTCTGTACACATTGAGTC
CTCGAATTTCAGCGGTAATTTTTCTTCTCAGCAAAACATTCCATGATTCCAGTAAATTAGTATTAATAGTTATTGAAGAT
GGTTTTTGTTATTAGATCAGTAGCATGAAACTGTGTGCCCACTCAAATTGAAGGTTCATTCACTAATTCGCTTCAAGCTT
CTTTTATCTGCAGTTATACGTTTGTTACATATGTGACACAGTTTGAGATTCTCCAGAACCAAAATGCCAAAAATAAAATC
AAGCATTTGAAAATTATGATGTTTAGATGAACCCTGTTAAACATCTGAATTACATATACAGATATACTTGGTCAGCTGCG
CATGAGTATTGGTAACTTGACTGGCTGAAACGTTTTCTTTTTCGACTGGTCGTAGGGTGTATTACTATCCTTGTAGATTA
GTTTTCTGTTTGCATCGGTTATTACCGTA-TCTTGCGGCTACTCTGTACGACGATAATGACTGATTTGATTAAGTGGTGG
TGAGATCTTAATTCATACATGATTGTTGCTGCAACTCTGTCATTGGTTCTTACACCATCTGCCTTGCAGGGTGATGCCGA
TGGTTCTTTGGACAGGCTCTGGCAGCAGAAGAGGGCTGAGATCAAGCAGTAG----------------------------
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>chr2D_1_TraesCS2D01G115900
CCTCCGCCGAGGTACGTCACGATTCCATCCTCCCCAGATCCATCCACTGTTTGCGCTGGACAATCTCGCCCCATCTTAAT
TTGCCGTCGAGTCATCGCCGGACCTGTATCTGGGGATGATTTGTGTCCTACATTTATACGATTAGCATCAGCTAGAATTG
TCTACGCGTGATCTGTATGGTTCGGCTGCTGCGATTGCACTACCGTTCGATGCCCAGAGGATGCCAGAGAA-AAGCGATA
GGGTTTATGGCTGTAA-TTCTTAGACATTTTTAATAATGAGATAATTTCCGATTGTTTAGTGC---CAGTGGTAGTTGTT
TGTTGCGATTGATTTCACTGAGAATGCGTGTGGTCGTTGATCATAACTACTTCGTATAGAACCTAGAGGATTGGAGGCTG
GTTGGGTGTTTGGTTGAATTTATTGGATGGGTTCAGGTGGGTGTTCTGCTTTCTAAAGCATTGCACTTTAGTGATCTAAA
TGATCTTATATTTCTTTACAGTGTGTGTATTTAGCTAAATATCTAATCCATCTTTTATCATTCATGTAAAATTGTCCATG
CCTTGGCAACAAAGACGCC-AAATCCAGTTATTTTGGATCAATGGCTCCTACTATGCTTGCCTGGTTTTTATTCAAAAAA
CTATGCTTGCCTGGTGCAGGGTCGGGCTACTGATCAACGTGACTGATAAAACTTATTTTATCCTTTTAGTAAAACATTCT
TCAATGGTAATTGGACCAGAAAATTTTCCGGTTTGGCCGCTAGTGGTCTGATTTCCGAAGCTATGTTGCACAGTTTCCTG
CTGCTGACAGCAGCTGTGCTATTTGGAATAAACCACAGGAGAGTTCAGAGTCATCCTTGTATCTGGGTTTGATATATGGA
ACTAGCTTTTATAGTTATATAT--CATCTTTATACCATAGTGTCCTTTGCAACTAGTCTCGCTGCTAAATATGAATGTGT
TTCTTCGATGACCTGCAGCAGTGTCCCAGTATCCCTCCAGTCCCCATTATGCAGAACGAGGTGGGTGATATGGTGGACCT
CTATGTCCCAAGGAAGTGGTATGTATTGATATATTGTCGTCTTGGTTACAGTACTGTGGCATTGCAACCTTGCTCATTCT
TGCTTTGTATTGGTTCCTGCAGCTCTGCCACCAACAGGATCATAACTGCCAAGGACCACGCCTCTGTCCAGATCAACATC
GGGCATGTGGATGCGAATGGACTGTATAATGGCAGTTTCACCACGTTTGCCCTCTCTGGATTCGTCCGCGCCCAGGTGTT
TTACCCTTGCTAT--CCTGACCCCATTTATTTGTCTTAAAGCACACTGTGTGAGTGATCCAGATTCTCCATGTTCTGATT
GTTCTCACGAAATGGGTTGTTTTCT-TTTTTTTGCCTGTCTAGCTGTTTGGAATAATATTTATCATGACATTGACATGCT
GTCAGTAGTTTCTTAAGATGTCCTTTGCATTGGTCAAACCAGTAACTCTTTAGTATTCTCTATTCTGTACACATTGAGTC
CTCGAATTTCAGCGGTAATTTTTCTTCTCAGCAAAACATTCCATGATTCCAGTAAATTAGTATTAATAGTTATTGAAGAT
GGTTTTTGTTATTAGATCAGTAGCATGAAACTGTGTGCCCACTCAAATTGAAGGTTCATTCACTAATTCGCTTCAAGCTT
CTTTTATCTGCAGTTATACGTTTGTTACATATGTGACACAGTTTGAGATTCTCCAGAACCAAAATGCCAAAAATAAAATC
AAGCATTTGAAAATTATGATGTTTAGATGAACCCTGTTAAACATCTGAATTACATATACAGATATACTTGGTCAGCTGCG
CATGAGTATTGGTAACTTGACTGGCTGAAACGTTTTCTTTTTCGACTGGTCGTAGGGTGTATTACTATCCTTGTAGATTA
GTTTTCTGTTTGCATCGGTTATTACCGTA-TCTTGCGGCTACTCTGTACGACGATAATGACTGATTTGATTAAGTGGTGG
TGAGATCTTAATTCATACATGATTGTTGCTGCAACTCTGTCATTGGTTCTTACACCATCTGCCTTGCAGGGTGATGCCGA
TGGTTCTTTGGACAGGCTCTGGCAGCAGAAGAGGGCTGAGATCAAGCAGTAGATGAGTTCCGTGAGGAAGATTTTGCTAG
GATAGATATTTATGAAACCGCTTTAAACCTTTTCTCAGGAATCTGTTATGGGTGTTTATGCTTTGCCTATGAATGGTCTA
TGATAAAACCGTGGACTGCACGCAGTGCTTATGGAAACCTTGCTTGAAGAATCATTATATCTTTGTCCATGAATGGTCTA
TGTTTCTAAGAGGAAACACCAGACTTGGTGTAATATGCTTCCTGGCAATGTACCTGAATTCTGAAATGCATTTTAGTCGC
TGCTCTTATGG-CTGTCTTGGATTATTGTGCTTGCTTTCTCTAATAAGTTGGAGAAGGGGCTGTTTGCTGTTAAATGTGT
CGGATTCTAATTGGCATCAGCTCTAGAAGTCTCTTTACAAACTAAACCATGATGAAAAAACATGGGGGAGATCCATAAAA
ATGGTTAAGATTGTCGCGTATCTAACTATAATCATCATTAGCCATCAACCAGTGGCTTATTCCAAATATGAATAATTCCA
CATATTTGTTTGGCAAAATCATATGAATTTTACCTATTTATAGGATCTTAAGCAAATGTGCAAAAGCAACATATTGTGTG
TTACTGTGGGAGATGTAGTC-----------------TGATGAGCTATTTGAAGAACAAAAGGCTCACAGGAAACTACAT
ACTGCATTTAAAACTCAAAAGAAACCCCGTTAGAACATCATAAGCCCCCGGTAGATAAAA--------------------
----------------TTAACATAATTTTGTTTCTAGATGGTTTGTTGTGTTTAGCCAAGTATCAGCAGCAAAGCAAGCT
GCTATAACTGTTGGGGACATTGAGTACACTGTGCACCACAAGGTTGTGAGCACCATCCACCCAAAGCAGAGAGTCTCACT
CCTACCTTTTGTTACAAAAGTGTGTTGGGCTGTTGAAGAAAGATCCAGCCATTGGCGCACACAAAAAAATCCAGGTTGCA
GCTGCAGGTGCTCTCCTACTTAGCAGTGGATAGGAAGATGTGTAGTTCCTTCCTTGATGTCCCCCA
>chr2B_1
CCTCCGCCGAGGTACGTCGCGACTCCATCCTCCCCAGATCCATGCACTGTTCGCGCTCGACAATCTCGCCCCATCTTAAT
TTGCCGTCGAGTTATCGCCGGACCTGAATTTGGGGATGATTTGTGTCCTGCATTTATACGATTAGCATCCGCTAGAATTG
TCTACGCGTGATCTGTATGGTTCGGCTGCTGCGATTGCACTACCGTTCGATGCCCAGAGGATGCCAGAGA-GAAGGGATA
GGGTTTATGTCTGTAAGT-TTTAGGCATTTTTAGTAATGAGGCAATTTCCGATTGTTTGGTGC---CAGTGGTAGCTGTT
TGTTGCGATTGATTTCACTGACAGTC------------------------------TAGATCCTAGGGGATTATAGGCTG
GTTGGATGTTTGGTCGAGTTTCTTGGATGGGTTCAGGTGGGTGTTCTGCTTTCTAAAGCACTGCACTTTAGTGATCTAAA
TGATCTTATATTTCTCTACAGTGTGTGTATTTGGCTAAATATCCAATCCATCTTTTATCATTCATGTAAAAGTGATCATG
CCTTGGCAACAAAGACGCCCAAATCCTGTTATTTTGGATCAATGGCTCCTACTATGCTTGCCTGGTTTTCATTC-AAAAA
CTATGCTTGCCTGGAGCACGGTCGGGGTACTGATCAACATGACTGATAAAACATATTTTATCCTTTTGGTAAAACATTCT
TGAATGGGAATTGGACCA-----CTTTCCTGTTCGGCTGCTAGGGGTCTGGTTTCTGAAGCTATGTTGCGCAGTTGCATA
CTGTTGACAACAGCTGTACTATTTGGAATAAACCACAGGAGAGTTCAGAGTCATCCTTGTATCTGGGTTTGATATATGGA
ACTAGTTTTTATAGTTATATATATTATCTTTATACCATAGTGTCCTTTGCAACTAGTCTCGCTTCTAAATATGAATGTCT
TTCTTCGATGACCTGCAGCAGCGTCCCAGTATCCCTCCAGTCCCCATTATGCAGAACGAGGTGGGTGATATGGTGGACCT
CTATGTCCCAAGGAAGTGGTACGTATTGATGTACTGTTGTCTTGGTTACAGTACTGTGGCATTGCAACTTTGCTCATTCT
TGCTTTGTATTGGTTCCTGCAGCTCTGCCACGAACAGGATCATAACTGCCAAGGACCACGCCTCTGTCCAGATCAACATC
GGGCATGTGGATGCGAATGGACTGTATAATGGCAGTTTCACCACGTTTGCCCTCTCTGGATTCGTCCGTGCCCAGGTGTT
TTACCCTTGCTATATCCTGACTCCGTTTATTTGTCTTAAAGCACACAGTGTGAGTGATCCAGATTCTCCATGTTCTGATT
GTTCTCACGAAATGGGTTGTTTTCTCTTTTTTTGTCTGTCTAGCTGATTGGGATAATATTTATCATGACATTGACATGCT
GCCAGTAGTTTCTTAAGATATCCTTTGCGTTGGTCAAACCAGTAACTCTGTAGTATTCTCTATTCTGCACACATTAAGTC
CTTGAATTTCAGCGGTAATTTTTCTTCTCAGCAAAACATTCCATGATTCCAGTAAATTAGTATTAATAGTTATTGAAGAT
CG-TTTTGTTATTAGATCAGTAGCATGAAACTGTGTGCCCACTCAAATTGAAGGTTCATTCACTAATTCGCTTCAAACTT
CTTTTATCTGCAGCTATACATTTGTTACATATGTGACACAGTTTGAGATTCTCCAGAACTAAAATGCCAAAAATAAAATC
AAGCATTTGAAAATTATGATGTTTAGATGAACCGTATTAAACATCTGAATTACATATACAGATATACTTGGTCAGCTGCG
CATGGGTATTGGTAACTTGACTG-CTGAAACGTTTTCTATTTTGACTGGTCGTAGGGTGTATTACTATCCTTGTAGATTA
GTTTTCTGTTTGCATCGGTTATTACCGTA-TCTTGCGGCTACTCTGTACGACGATAATGACTGATCTGATTAAGTGGTGG
TGAGATCTTAATTCGTACATGATTGTTGCTGCAACTCTGTCATTGGTTCTTACACCATCTGCCTTGCAGGGTGATGCCGA
TGGTTCTTTGGACAGGCTCTGGCAGCAGAAGAGGGCTGAGATCAAGCAGTAGATGAGTTCTGCGAGGAAGATTTTGCTAG
GATAAATATTTATAAAACCGCTTAAAACCTTTTTTGAGGAATCTGTTATGGGTGTTTATGCTTTGCCTATGAATGGTCTA
TGATAAAACCGTGGACTGCATGCAGTGCTTATGGAAACCTTGCTTGAAGAATCATTATATCTTTGTCCATGAATGGTCTA
TGTTTCTCAGACGAAACACTAAACTTGGTGTAATATGCTTCCTGGCAATGTACCTGAATTCTGAAATGCATTTTTGTCGC
TGCTCTTATGACCTGTCTTGGATTATTGTGCTTGCTTTCTCCCATAAGTTGGAGAAGGGGCTGTTTGCCGTTAAATGTGT
TGGATTCTATTTGGCATCAGCTCTAGAAGTCTCTTTACAAACTAAACCATCATGAAAAAACATGGGGGAGATTCATAGAA
ATTGGGCAAGAT-TCGTGTATCTAACTTTAATCATCATTAGCCAGCAACCAGTGGCTTATTCCAAACATGAATAATTCCA
CATATTTGTATGGCAAAATCATATGAATTTTACCTATTTCTAGGATCTTACACAAATGTGTAAAAGCAACTTGCCATGGT
TGATTCTT---GATAGGGAGTTCCTGTTGCAGATGTTTGATGTGCTATCTGAGAAACAGAAGGCTCACAGGAAACAACAC
ACTGCATTTAAAACTCGAAATAAACC--GTTAGAACATCACGAGCCCTTGGTAGATAAAA--------------------
----------------TT------------------------------------GCCTAGTATCAGCAGCCAAGCAAGCT
GCTATAACTGTAGGAGACACTGAGTACTCTGTGCACCACAGGGTTGTGAGCACCATCCACCCAAAGCAGAGAGTCTCACT
CCTACCTTTTGTTACAAAAGTGTGTTGGGCTGTTGAAGAAAGATCCAGCCATTGGCGCGCACACAAAAATCCAGGTTGCA
GCTGTAGGTGCTCTCCTACTTA-CAGTGGATAG---------------------------------
>chr2A_7
------CCGAGGTACGTCGCGATCCCATCCTCCCCAAATCTATCCACTGTTTGCGCTTGAAAATCTCGCTCCGTCTTAAT
TTGCCGTCGAGTTATCGCCGGACCTGTATCCTGGGATGATTTGTGTCCTACATTTATACGATTAGCATCCGCTAGAATTT
TGTGCGCGTGATCTTTATGGTTCGGCTGCTGCGATTGCACTCCCGTTCGATGCCCAGAGGATGCCAGAGCGGAGGAGATA
GGGTTTTTGGCTGTAA-T-CTTAGATATTTTTCATAATGAGGTACCAATCGCTTAGTGCCAGTGGACAGTGGTAGTTGTT
TGTTGCGATTGATTTCACTGAGAATGCGTGTGGTCGTTGCTCATAACTACTTCGTATAAAACCTAGCAGATTATAGGCTG
GTTGGGTGTTTGGGCGAATTTCTTTGATGGGTTCAGGTGGGTGTTCTGCTTTCTAAAGCATTGCAC--------------
----------------------GTATGTATTTGGCTAAATGTCCAATCCATCTTTTATCATTCATGTAAAGTTGTTCATG
CCTTGCCAAATT-GACGCCCAAATCCTGTTATTTTGGATCAATGGCTCCTACTAGGCTTGCCTGGTTTTTATTC-AAAAA
CCATGCTTGCCTGGTGCAGGGTCAGGGTACTGATCAACGTGACTGATAAAACATATTTTATCATTTTGGTAAAACATTCT
TAAATGGGA-TTGGACCA-----TTTTCCTGTTTGGCCGCAAGGGGTCTGGTTTCTTTAGCTATTTTGCGCAGTTGCGTA
CTGTTGACAGCAGCTGTACTATTTGGAATAAACCATAGGAGAGTTCACAGTCATCCTTGTATCTGGGTTTGATCTATGGA
ACTAGCTTTTATAGTTATATATATCATCTTTATACCATAGTGTCCTTTGCAACTAGTCTCACTGCTAAATATGAATGTGT
TTCTTCGACGACCTGCAGCAGTGTCCCAGTATCCCTCCAGTCCCCATTATGCAGAACGAGGTGGGTGATATGGTGGACCT
CTATGTCCCAAGGAAGTGGTACGTATTGATGTATTGTCGTCTTGGTTACGGTACTGTGGCATTGCAACCTTGCTCATTCT
TGCTTTGTATTGGTTCCTGCAGCTCTGCCACCAACAGGATCATAACTGCCAAGGACCATGCCTCTGTCCAGATCAACATC
GGGCATGTGGATGCGAATGGACTGTATAATGGCAGTTTCACCACGTTTGCCCTCTCTGGATTCGTCCGCGCCCAGGTGTT
TTACCCTTGCTAT--CCTGACCCCATTTATTTGTCTTAAAGCACACTGTG--AGTGATCCAGATTCTCCATGTTCTGATT
GTTCTCACGAAATGGGTTGTTTTCT----TTTTGCCTGTCTAGCTGATTGGAATAATATTTATCATGACATTGACATGCT
GTCAGTAGTTTGTTAAGATATCCTTTGCATTGGTCAAACCAGTAACTCTTTAGTATTCTCTATTCTGCACACATTGAGTC
CTTGAGTTTCAGCAGTAATTTTTCTTCTAAGCAAAACATTCCATGATTCCAGTAAATTAGTATTAATAGTTATTGAAGAT
GTTTTTTGTTATGAGATCAGTAGCATGAAACTGTTTGCCCACTCAAATTGAAGGTTCATTCTCTAATTCACATCAAGCTT
CTTTTATCTGCAGTTATACATGTTTTACATATGTGACACAGTTTGAGATTCTCCAGAACCAAAATGACAAAAATAAAATC
AAGCATTCGAAAATCATGATGTTTAGATGAACCCTATT-AACATCTGAATTACATGTACAGATATACTTGGTCAGTTGTG
CATGAGTATTGGTAACTTGACTGGCTGAAACGTTTTCTTTTTCTACTGGTCATACAGTGTATTGCTATCCTTGTACACTT
GTTTTCTGTTTGCATCGGTTATTACTGTATTCTTGCGGCTACTCTGTACGACGATAATGACTGATTTGATTAAGTGGTGG
TGAGATCTTAATTCATACATGATTGTTGCTGCAACTCTGTCATTGGTTCTTACACCATCTGCCTTGCAGGGTGATGCCGA
TGGTTCTTTGGACAGGCTCTGGCAGCAGAAGAGGGCTGAGATCAAGCAGTAGATGAGTTCCGCGTGGCAGATTTTGCTAG
GATGGATATTTATGAAACCGCTTTAAACCTTTTTTGAGGAATCTGTTATGGGTGTTTATGCTTTGCCTATGAATGGTCTA
TGATAAAACCGTGGACTGCACGCAGTGCTTATGGAAACATTACTTGAAGAATCATTATATCTTTGTCCATGAATGGTCTA
TGTTTCTAAGAGGAAACACTAGACTTGGTGTAATATGCTTCCTGGCAATGTGCCTGAATTCTTAAATGCATTTTAGTCGC
TGCTCTTATGG-CTCTCTTGGATTATTGTGCTTGCTTTCTCCAATAATTTGGTGAAGGGGCTGTTTGCTGTTATATGTTT
C----TCTAATTGCCATCGGCTCTAGAAGTCTCTTTACAAACTAAACCATGATGAAAAAACACGGGGGAGATCCATAAAA
ATGGGCAAGATTGTTGCGCATCTAACTATAATCATCATTAGCCAGCAACCAGTGGCTTATTCCAAGCATGAATAAATCCA
CATATTTGTTTGGCAAAATCATATCAATGTTACCTATTTATAGAATCTTAAGCAAATGTGCAAAAGCAACGTACTATTGT
TGATTCTT---GATGTAGCC-----------------TGATGAGCTATTTGAAAAACAGAAGGCTCATAGGAAAATACAT
ACTGCGTTTAGAAGTCAGAAGAAACCCTGTTAGAACATCATGAGCCCCCGGTAGATAAAATTCACATAATTTTGTTTCTA
GATGGTTTGCTGTGTTTT------------------------------------GCCAAGTATCAGCAGCAAAGCAAGCT
GACTGTTG----GGAGACATTGAGTACACTGTGCACCACAAGGTTGTGAGCACCATCCACCCAAAGCAGAGAGTCTAGCT
CCTACCTTTTGTTACAAAAGTGTGTTGGGCTGTTGAAGAAAGATCCAGCCATTGGTGCACACACAAAAATCCAAGTTGCA
GCTGTAGGTGCTCTCCTACATAGCAGTGGATAGGAAGATGTGTAGTTCCTTCCTTGATGTCCCCCA
>SNPs
------------------S--------------------------------------S----------------------
------------S--------------------------------------------------------S----------
----------------------------------------------------------------------S----S----
------------------S----------------------S----------------S---------------------
---------------------------------------S--------------------------S-----SS------
--------------S------S----------------------------------------------------------
---------------S----------------S----------S-------------------------------S----
--------------------------S-----------------------------------------------S-----
--------------------------S-------------------------S--------------S------------
-S-----S----------SSSSS------S-------------S------S----S-------------S-----S-S-S
---S-------------S--------------------------------------------------------------
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---------------------S--------S-------------------------------------------------
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----------------------------------------------S---------------------------------
-------------------S-----------------------------------------------S------------
--S-----------------------------------------------------------------------------
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-------------------S------------------------------------------------------------
-----------------------------------S--------------------------------------------
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--------------------------------------------------------------S-----------------
---------------------------------S-S--------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------S--------------------------------------
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----SS--------------------------------------S---------------------S-------------
----------------------------------------------------------------------S--S-S--SS
-S-S-S-SSSS-------S----------------------------------S----S---------------------
---------------------------S-------------S--------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------S--S-----------------------------------------------------------------
---------------------------------------------------------------S----------------
----S-------------------------------------------------------------
>forward_360
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--------------------AGAATGCGTGTGGTCGTTGA----------------------------------------
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>reverse_1460
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-------------------GTCCTTTGCATTGGTCAAACC----------------------------------------
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>forward_804
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----------------------------------------------------------------GTTGCACAGTTTCCTG
CTGC----------------------------------------------------------------------------
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>reverse_2714
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-------------------------------------------------------------------------TTGTGTG
TTACTGTGGGAGATGT----------------------------------------------------------------
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