Multiple sequence alignment - TraesCS2D01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G115000 chr2D 100.000 2575 0 0 1 2575 63704701 63702127 0.000000e+00 4756.0
1 TraesCS2D01G115000 chr2D 91.765 170 14 0 1670 1839 425286932 425287101 1.190000e-58 237.0
2 TraesCS2D01G115000 chr2B 91.684 938 33 19 743 1654 99773775 99772857 0.000000e+00 1258.0
3 TraesCS2D01G115000 chr2B 94.118 425 20 5 276 699 247393087 247392667 2.160000e-180 641.0
4 TraesCS2D01G115000 chr2B 85.515 359 33 10 1841 2189 99772779 99772430 8.760000e-95 357.0
5 TraesCS2D01G115000 chr2B 82.946 387 18 25 2174 2559 99772401 99772062 3.220000e-79 305.0
6 TraesCS2D01G115000 chr2A 92.155 905 38 13 763 1654 65396429 65395545 0.000000e+00 1247.0
7 TraesCS2D01G115000 chr2A 90.657 396 18 8 2159 2554 65395029 65394653 2.290000e-140 508.0
8 TraesCS2D01G115000 chr2A 95.055 182 9 0 87 268 65397952 65397771 1.170000e-73 287.0
9 TraesCS2D01G115000 chr2A 97.619 42 1 0 706 747 65397775 65397734 3.550000e-09 73.1
10 TraesCS2D01G115000 chr5D 93.088 434 27 3 267 700 416588317 416588747 1.300000e-177 632.0
11 TraesCS2D01G115000 chr5B 91.935 434 32 3 267 699 527945433 527945002 2.830000e-169 604.0
12 TraesCS2D01G115000 chr1B 91.705 434 32 4 268 699 664069422 664068991 1.320000e-167 599.0
13 TraesCS2D01G115000 chr1B 92.363 419 25 7 268 683 586296669 586297083 7.940000e-165 590.0
14 TraesCS2D01G115000 chr1B 92.308 169 13 0 1670 1838 519817806 519817974 9.210000e-60 241.0
15 TraesCS2D01G115000 chr7B 91.034 435 35 4 267 699 269796509 269796077 3.690000e-163 584.0
16 TraesCS2D01G115000 chr7B 91.142 429 33 4 268 696 715819514 715819937 6.180000e-161 577.0
17 TraesCS2D01G115000 chr3A 92.476 412 23 6 287 696 204861759 204862164 1.330000e-162 582.0
18 TraesCS2D01G115000 chr3A 82.308 130 20 3 1274 1402 690079904 690079777 2.710000e-20 110.0
19 TraesCS2D01G115000 chr3D 90.531 433 33 6 269 700 382826407 382826832 1.340000e-157 566.0
20 TraesCS2D01G115000 chr3D 81.538 130 21 3 1274 1402 553679525 553679398 1.260000e-18 104.0
21 TraesCS2D01G115000 chr6D 91.429 175 13 2 1671 1844 315624174 315624001 3.310000e-59 239.0
22 TraesCS2D01G115000 chr6D 92.262 168 13 0 1671 1838 389700705 389700538 3.310000e-59 239.0
23 TraesCS2D01G115000 chr6D 92.262 168 13 0 1670 1837 406391524 406391357 3.310000e-59 239.0
24 TraesCS2D01G115000 chr6B 91.429 175 13 2 1671 1843 400964520 400964346 3.310000e-59 239.0
25 TraesCS2D01G115000 chr6B 89.362 188 14 5 1671 1855 696483389 696483573 5.540000e-57 231.0
26 TraesCS2D01G115000 chr4D 91.279 172 15 0 1671 1842 477898959 477898788 4.280000e-58 235.0
27 TraesCS2D01G115000 chr5A 89.944 179 18 0 1671 1849 618189842 618189664 5.540000e-57 231.0
28 TraesCS2D01G115000 chr3B 82.836 134 17 6 1273 1402 734686482 734686351 5.820000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G115000 chr2D 63702127 63704701 2574 True 4756.000 4756 100.0000 1 2575 1 chr2D.!!$R1 2574
1 TraesCS2D01G115000 chr2B 99772062 99773775 1713 True 640.000 1258 86.7150 743 2559 3 chr2B.!!$R2 1816
2 TraesCS2D01G115000 chr2A 65394653 65397952 3299 True 528.775 1247 93.8715 87 2554 4 chr2A.!!$R1 2467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.034337 GCTTGGAAGGTACGGACACA 59.966 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 3377 0.109153 TCAGTTCTGCATGCACAGGT 59.891 50.0 18.46 0.0 38.26 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.104530 GGGCTCGCTACCGAAGTC 59.895 66.667 0.00 0.00 43.87 3.01
18 19 2.707849 GGGCTCGCTACCGAAGTCA 61.708 63.158 0.00 0.00 43.87 3.41
19 20 1.226717 GGCTCGCTACCGAAGTCAG 60.227 63.158 0.00 0.00 43.87 3.51
20 21 1.654954 GGCTCGCTACCGAAGTCAGA 61.655 60.000 0.00 0.00 43.87 3.27
21 22 0.523757 GCTCGCTACCGAAGTCAGAC 60.524 60.000 0.00 0.00 43.87 3.51
22 23 0.803117 CTCGCTACCGAAGTCAGACA 59.197 55.000 2.66 0.00 43.87 3.41
23 24 1.402259 CTCGCTACCGAAGTCAGACAT 59.598 52.381 2.66 0.00 43.87 3.06
24 25 1.132453 TCGCTACCGAAGTCAGACATG 59.868 52.381 2.66 0.00 41.17 3.21
25 26 1.799181 CGCTACCGAAGTCAGACATGG 60.799 57.143 2.66 3.82 36.29 3.66
26 27 1.204941 GCTACCGAAGTCAGACATGGT 59.795 52.381 13.89 13.89 0.00 3.55
27 28 2.881074 CTACCGAAGTCAGACATGGTG 58.119 52.381 17.30 0.00 0.00 4.17
28 29 0.321671 ACCGAAGTCAGACATGGTGG 59.678 55.000 9.82 3.85 0.00 4.61
29 30 1.021390 CCGAAGTCAGACATGGTGGC 61.021 60.000 2.66 0.00 0.00 5.01
30 31 1.354337 CGAAGTCAGACATGGTGGCG 61.354 60.000 2.66 0.00 0.00 5.69
31 32 1.639298 GAAGTCAGACATGGTGGCGC 61.639 60.000 0.00 0.00 0.00 6.53
32 33 2.046892 GTCAGACATGGTGGCGCT 60.047 61.111 7.64 0.00 0.00 5.92
33 34 1.672356 GTCAGACATGGTGGCGCTT 60.672 57.895 7.64 0.00 0.00 4.68
34 35 1.672030 TCAGACATGGTGGCGCTTG 60.672 57.895 7.64 0.16 0.00 4.01
35 36 2.360350 AGACATGGTGGCGCTTGG 60.360 61.111 7.64 0.00 0.00 3.61
36 37 2.359850 GACATGGTGGCGCTTGGA 60.360 61.111 7.64 0.00 0.00 3.53
37 38 1.971167 GACATGGTGGCGCTTGGAA 60.971 57.895 7.64 0.00 0.00 3.53
38 39 1.926511 GACATGGTGGCGCTTGGAAG 61.927 60.000 7.64 0.00 0.00 3.46
39 40 2.361610 ATGGTGGCGCTTGGAAGG 60.362 61.111 7.64 0.00 0.00 3.46
40 41 3.210012 ATGGTGGCGCTTGGAAGGT 62.210 57.895 7.64 0.00 0.00 3.50
41 42 1.847798 ATGGTGGCGCTTGGAAGGTA 61.848 55.000 7.64 0.00 0.00 3.08
42 43 2.038837 GGTGGCGCTTGGAAGGTAC 61.039 63.158 7.64 0.00 0.00 3.34
43 44 2.047655 TGGCGCTTGGAAGGTACG 60.048 61.111 7.64 0.00 0.00 3.67
44 45 2.818274 GGCGCTTGGAAGGTACGG 60.818 66.667 7.64 0.00 0.00 4.02
45 46 2.263540 GCGCTTGGAAGGTACGGA 59.736 61.111 0.00 0.00 0.00 4.69
46 47 2.098831 GCGCTTGGAAGGTACGGAC 61.099 63.158 0.00 0.00 0.00 4.79
47 48 1.290955 CGCTTGGAAGGTACGGACA 59.709 57.895 0.00 0.00 0.00 4.02
48 49 1.012486 CGCTTGGAAGGTACGGACAC 61.012 60.000 0.00 0.00 0.00 3.67
49 50 0.034337 GCTTGGAAGGTACGGACACA 59.966 55.000 0.00 0.00 0.00 3.72
50 51 1.541670 GCTTGGAAGGTACGGACACAA 60.542 52.381 0.00 0.00 0.00 3.33
51 52 2.841215 CTTGGAAGGTACGGACACAAA 58.159 47.619 0.00 0.00 0.00 2.83
52 53 2.243602 TGGAAGGTACGGACACAAAC 57.756 50.000 0.00 0.00 0.00 2.93
53 54 1.202675 TGGAAGGTACGGACACAAACC 60.203 52.381 0.00 0.00 0.00 3.27
60 61 4.036977 GGACACAAACCGAAGCGA 57.963 55.556 0.00 0.00 0.00 4.93
61 62 2.313267 GGACACAAACCGAAGCGAA 58.687 52.632 0.00 0.00 0.00 4.70
62 63 0.658897 GGACACAAACCGAAGCGAAA 59.341 50.000 0.00 0.00 0.00 3.46
63 64 1.596220 GGACACAAACCGAAGCGAAAC 60.596 52.381 0.00 0.00 0.00 2.78
64 65 1.062880 GACACAAACCGAAGCGAAACA 59.937 47.619 0.00 0.00 0.00 2.83
65 66 1.673920 ACACAAACCGAAGCGAAACAT 59.326 42.857 0.00 0.00 0.00 2.71
66 67 2.043411 CACAAACCGAAGCGAAACATG 58.957 47.619 0.00 0.00 0.00 3.21
67 68 1.944024 ACAAACCGAAGCGAAACATGA 59.056 42.857 0.00 0.00 0.00 3.07
68 69 2.356382 ACAAACCGAAGCGAAACATGAA 59.644 40.909 0.00 0.00 0.00 2.57
69 70 2.969443 AACCGAAGCGAAACATGAAG 57.031 45.000 0.00 0.00 0.00 3.02
70 71 1.156736 ACCGAAGCGAAACATGAAGG 58.843 50.000 0.00 0.00 0.00 3.46
71 72 1.270625 ACCGAAGCGAAACATGAAGGA 60.271 47.619 0.00 0.00 0.00 3.36
72 73 1.804151 CCGAAGCGAAACATGAAGGAA 59.196 47.619 0.00 0.00 0.00 3.36
73 74 2.159653 CCGAAGCGAAACATGAAGGAAG 60.160 50.000 0.00 0.00 0.00 3.46
74 75 2.480419 CGAAGCGAAACATGAAGGAAGT 59.520 45.455 0.00 0.00 0.00 3.01
75 76 3.665323 CGAAGCGAAACATGAAGGAAGTG 60.665 47.826 0.00 0.00 0.00 3.16
76 77 3.126001 AGCGAAACATGAAGGAAGTGA 57.874 42.857 0.00 0.00 0.00 3.41
77 78 3.476552 AGCGAAACATGAAGGAAGTGAA 58.523 40.909 0.00 0.00 0.00 3.18
78 79 3.499918 AGCGAAACATGAAGGAAGTGAAG 59.500 43.478 0.00 0.00 0.00 3.02
79 80 3.814945 CGAAACATGAAGGAAGTGAAGC 58.185 45.455 0.00 0.00 0.00 3.86
80 81 3.365364 CGAAACATGAAGGAAGTGAAGCC 60.365 47.826 0.00 0.00 0.00 4.35
81 82 1.813513 ACATGAAGGAAGTGAAGCCG 58.186 50.000 0.00 0.00 0.00 5.52
82 83 1.089920 CATGAAGGAAGTGAAGCCGG 58.910 55.000 0.00 0.00 0.00 6.13
83 84 0.678048 ATGAAGGAAGTGAAGCCGGC 60.678 55.000 21.89 21.89 0.00 6.13
84 85 1.302511 GAAGGAAGTGAAGCCGGCA 60.303 57.895 31.54 4.59 0.00 5.69
85 86 0.889186 GAAGGAAGTGAAGCCGGCAA 60.889 55.000 31.54 11.29 0.00 4.52
94 95 1.134699 TGAAGCCGGCAAGAGTGATAG 60.135 52.381 31.54 0.00 0.00 2.08
110 111 3.815401 GTGATAGGGTTTGATCCGATTGG 59.185 47.826 0.00 0.00 0.00 3.16
156 157 2.679996 GGTGGGCCAACATGGGAC 60.680 66.667 18.85 0.00 38.19 4.46
204 205 5.105752 GGCGTATTCAGATCACCTCATATC 58.894 45.833 0.00 0.00 0.00 1.63
209 210 7.147932 CGTATTCAGATCACCTCATATCCATCT 60.148 40.741 0.00 0.00 0.00 2.90
210 211 9.194972 GTATTCAGATCACCTCATATCCATCTA 57.805 37.037 0.00 0.00 0.00 1.98
266 267 6.199937 CCAGACATTTGGGTTAGATTTGAG 57.800 41.667 0.00 0.00 34.46 3.02
267 268 5.126061 CCAGACATTTGGGTTAGATTTGAGG 59.874 44.000 0.00 0.00 34.46 3.86
268 269 5.126061 CAGACATTTGGGTTAGATTTGAGGG 59.874 44.000 0.00 0.00 0.00 4.30
269 270 4.352893 ACATTTGGGTTAGATTTGAGGGG 58.647 43.478 0.00 0.00 0.00 4.79
270 271 4.045334 ACATTTGGGTTAGATTTGAGGGGA 59.955 41.667 0.00 0.00 0.00 4.81
271 272 4.316025 TTTGGGTTAGATTTGAGGGGAG 57.684 45.455 0.00 0.00 0.00 4.30
272 273 3.214694 TGGGTTAGATTTGAGGGGAGA 57.785 47.619 0.00 0.00 0.00 3.71
273 274 3.537337 TGGGTTAGATTTGAGGGGAGAA 58.463 45.455 0.00 0.00 0.00 2.87
274 275 4.119155 TGGGTTAGATTTGAGGGGAGAAT 58.881 43.478 0.00 0.00 0.00 2.40
275 276 5.293643 TGGGTTAGATTTGAGGGGAGAATA 58.706 41.667 0.00 0.00 0.00 1.75
276 277 5.917087 TGGGTTAGATTTGAGGGGAGAATAT 59.083 40.000 0.00 0.00 0.00 1.28
277 278 6.044404 TGGGTTAGATTTGAGGGGAGAATATC 59.956 42.308 0.00 0.00 0.00 1.63
278 279 6.044404 GGGTTAGATTTGAGGGGAGAATATCA 59.956 42.308 0.00 0.00 0.00 2.15
279 280 6.937465 GGTTAGATTTGAGGGGAGAATATCAC 59.063 42.308 0.00 0.00 0.00 3.06
280 281 7.420214 GGTTAGATTTGAGGGGAGAATATCACA 60.420 40.741 0.00 0.00 30.31 3.58
281 282 6.776887 AGATTTGAGGGGAGAATATCACAT 57.223 37.500 0.00 0.00 30.31 3.21
282 283 6.540995 AGATTTGAGGGGAGAATATCACATG 58.459 40.000 0.00 0.00 30.31 3.21
283 284 5.974156 TTTGAGGGGAGAATATCACATGA 57.026 39.130 0.00 0.00 30.31 3.07
284 285 6.520021 TTTGAGGGGAGAATATCACATGAT 57.480 37.500 0.00 0.00 38.51 2.45
285 286 7.631510 TTTGAGGGGAGAATATCACATGATA 57.368 36.000 0.00 4.11 40.85 2.15
286 287 6.611613 TGAGGGGAGAATATCACATGATAC 57.388 41.667 0.00 0.00 39.57 2.24
287 288 5.485353 TGAGGGGAGAATATCACATGATACC 59.515 44.000 0.00 1.52 39.57 2.73
288 289 5.415065 AGGGGAGAATATCACATGATACCA 58.585 41.667 0.00 0.00 39.57 3.25
289 290 5.851693 AGGGGAGAATATCACATGATACCAA 59.148 40.000 0.00 0.00 39.57 3.67
290 291 5.940470 GGGGAGAATATCACATGATACCAAC 59.060 44.000 0.00 0.00 39.57 3.77
291 292 6.465751 GGGGAGAATATCACATGATACCAACA 60.466 42.308 0.00 0.00 39.57 3.33
292 293 6.428159 GGGAGAATATCACATGATACCAACAC 59.572 42.308 0.00 0.00 39.57 3.32
293 294 7.220030 GGAGAATATCACATGATACCAACACT 58.780 38.462 0.00 0.00 39.57 3.55
294 295 7.716998 GGAGAATATCACATGATACCAACACTT 59.283 37.037 0.00 0.00 39.57 3.16
295 296 9.764363 GAGAATATCACATGATACCAACACTTA 57.236 33.333 0.00 0.00 39.57 2.24
300 301 7.728847 TCACATGATACCAACACTTATATGC 57.271 36.000 0.00 0.00 0.00 3.14
301 302 7.508687 TCACATGATACCAACACTTATATGCT 58.491 34.615 0.00 0.00 0.00 3.79
302 303 7.657354 TCACATGATACCAACACTTATATGCTC 59.343 37.037 0.00 0.00 0.00 4.26
303 304 6.936900 ACATGATACCAACACTTATATGCTCC 59.063 38.462 0.00 0.00 0.00 4.70
304 305 5.865085 TGATACCAACACTTATATGCTCCC 58.135 41.667 0.00 0.00 0.00 4.30
305 306 5.368230 TGATACCAACACTTATATGCTCCCA 59.632 40.000 0.00 0.00 0.00 4.37
306 307 4.796110 ACCAACACTTATATGCTCCCAT 57.204 40.909 0.00 0.00 35.44 4.00
307 308 4.464008 ACCAACACTTATATGCTCCCATG 58.536 43.478 0.00 0.00 32.85 3.66
308 309 4.165950 ACCAACACTTATATGCTCCCATGA 59.834 41.667 0.00 0.00 32.85 3.07
309 310 5.163055 ACCAACACTTATATGCTCCCATGAT 60.163 40.000 0.00 0.00 32.85 2.45
310 311 6.044287 ACCAACACTTATATGCTCCCATGATA 59.956 38.462 0.00 0.00 32.85 2.15
311 312 6.372659 CCAACACTTATATGCTCCCATGATAC 59.627 42.308 0.00 0.00 32.85 2.24
312 313 6.054860 ACACTTATATGCTCCCATGATACC 57.945 41.667 0.00 0.00 32.85 2.73
313 314 5.547666 ACACTTATATGCTCCCATGATACCA 59.452 40.000 0.00 0.00 32.85 3.25
314 315 6.044287 ACACTTATATGCTCCCATGATACCAA 59.956 38.462 0.00 0.00 32.85 3.67
315 316 7.114754 CACTTATATGCTCCCATGATACCAAT 58.885 38.462 0.00 0.00 32.85 3.16
316 317 7.613022 CACTTATATGCTCCCATGATACCAATT 59.387 37.037 0.00 0.00 32.85 2.32
317 318 8.172741 ACTTATATGCTCCCATGATACCAATTT 58.827 33.333 0.00 0.00 32.85 1.82
318 319 6.845758 ATATGCTCCCATGATACCAATTTG 57.154 37.500 0.00 0.00 32.85 2.32
319 320 4.248174 TGCTCCCATGATACCAATTTGA 57.752 40.909 0.00 0.00 0.00 2.69
320 321 4.608269 TGCTCCCATGATACCAATTTGAA 58.392 39.130 0.00 0.00 0.00 2.69
321 322 5.022122 TGCTCCCATGATACCAATTTGAAA 58.978 37.500 0.00 0.00 0.00 2.69
322 323 5.483231 TGCTCCCATGATACCAATTTGAAAA 59.517 36.000 0.00 0.00 0.00 2.29
323 324 6.013898 TGCTCCCATGATACCAATTTGAAAAA 60.014 34.615 0.00 0.00 0.00 1.94
324 325 7.049754 GCTCCCATGATACCAATTTGAAAAAT 58.950 34.615 0.00 0.00 0.00 1.82
325 326 7.553760 GCTCCCATGATACCAATTTGAAAAATT 59.446 33.333 0.00 0.00 0.00 1.82
326 327 9.101655 CTCCCATGATACCAATTTGAAAAATTC 57.898 33.333 0.00 0.00 0.00 2.17
327 328 8.600668 TCCCATGATACCAATTTGAAAAATTCA 58.399 29.630 0.00 0.00 38.04 2.57
391 392 7.889589 TGTTCTCAACATATGTGTCTACAAG 57.110 36.000 9.63 0.32 37.08 3.16
392 393 6.368791 TGTTCTCAACATATGTGTCTACAAGC 59.631 38.462 9.63 0.00 37.08 4.01
393 394 5.419542 TCTCAACATATGTGTCTACAAGCC 58.580 41.667 9.63 0.00 40.84 4.35
394 395 4.513442 TCAACATATGTGTCTACAAGCCC 58.487 43.478 9.63 0.00 40.84 5.19
395 396 4.225042 TCAACATATGTGTCTACAAGCCCT 59.775 41.667 9.63 0.00 40.84 5.19
396 397 5.423931 TCAACATATGTGTCTACAAGCCCTA 59.576 40.000 9.63 0.00 40.84 3.53
397 398 5.950544 ACATATGTGTCTACAAGCCCTAA 57.049 39.130 7.78 0.00 40.84 2.69
398 399 6.308015 ACATATGTGTCTACAAGCCCTAAA 57.692 37.500 7.78 0.00 40.84 1.85
399 400 6.717289 ACATATGTGTCTACAAGCCCTAAAA 58.283 36.000 7.78 0.00 40.84 1.52
400 401 7.172342 ACATATGTGTCTACAAGCCCTAAAAA 58.828 34.615 7.78 0.00 40.84 1.94
426 427 9.559732 AAATCAGATCCAAATTCGATATACACA 57.440 29.630 0.00 0.00 0.00 3.72
427 428 9.730705 AATCAGATCCAAATTCGATATACACAT 57.269 29.630 0.00 0.00 0.00 3.21
428 429 9.730705 ATCAGATCCAAATTCGATATACACATT 57.269 29.630 0.00 0.00 0.00 2.71
429 430 8.992073 TCAGATCCAAATTCGATATACACATTG 58.008 33.333 0.00 0.00 0.00 2.82
430 431 8.992073 CAGATCCAAATTCGATATACACATTGA 58.008 33.333 0.00 0.00 0.00 2.57
431 432 8.993121 AGATCCAAATTCGATATACACATTGAC 58.007 33.333 0.00 0.00 0.00 3.18
432 433 8.675705 ATCCAAATTCGATATACACATTGACA 57.324 30.769 0.00 0.00 0.00 3.58
433 434 8.499403 TCCAAATTCGATATACACATTGACAA 57.501 30.769 0.00 0.00 0.00 3.18
434 435 8.951243 TCCAAATTCGATATACACATTGACAAA 58.049 29.630 0.00 0.00 0.00 2.83
435 436 9.009327 CCAAATTCGATATACACATTGACAAAC 57.991 33.333 0.00 0.00 0.00 2.93
436 437 9.553418 CAAATTCGATATACACATTGACAAACA 57.447 29.630 0.00 0.00 0.00 2.83
440 441 9.952188 TTCGATATACACATTGACAAACAAAAA 57.048 25.926 0.00 0.00 42.03 1.94
468 469 9.561069 AGAAAAATCTGTTGTGAATAGTGTAGT 57.439 29.630 0.00 0.00 0.00 2.73
513 514 9.624697 TTTTGTCTTTATTGACACTATTCATGC 57.375 29.630 0.00 0.00 45.32 4.06
514 515 8.565896 TTGTCTTTATTGACACTATTCATGCT 57.434 30.769 0.00 0.00 45.32 3.79
515 516 7.977904 TGTCTTTATTGACACTATTCATGCTG 58.022 34.615 0.00 0.00 41.43 4.41
516 517 7.823799 TGTCTTTATTGACACTATTCATGCTGA 59.176 33.333 0.00 0.00 41.43 4.26
517 518 8.668353 GTCTTTATTGACACTATTCATGCTGAA 58.332 33.333 1.85 1.85 37.55 3.02
521 522 9.791820 TTATTGACACTATTCATGCTGAATTTG 57.208 29.630 14.02 13.44 44.03 2.32
522 523 6.822667 TGACACTATTCATGCTGAATTTGT 57.177 33.333 14.02 15.56 44.03 2.83
523 524 6.845302 TGACACTATTCATGCTGAATTTGTC 58.155 36.000 24.40 24.40 44.03 3.18
524 525 6.656270 TGACACTATTCATGCTGAATTTGTCT 59.344 34.615 27.04 14.91 44.03 3.41
525 526 7.175467 TGACACTATTCATGCTGAATTTGTCTT 59.825 33.333 27.04 15.15 44.03 3.01
526 527 7.889469 ACACTATTCATGCTGAATTTGTCTTT 58.111 30.769 14.02 0.00 44.03 2.52
527 528 8.362639 ACACTATTCATGCTGAATTTGTCTTTT 58.637 29.630 14.02 0.00 44.03 2.27
528 529 9.199982 CACTATTCATGCTGAATTTGTCTTTTT 57.800 29.630 14.02 0.00 44.03 1.94
550 551 7.606858 TTTTGTTTCTCATTGCACAATTTGA 57.393 28.000 2.79 0.00 0.00 2.69
551 552 7.606858 TTTGTTTCTCATTGCACAATTTGAA 57.393 28.000 2.79 0.00 0.00 2.69
552 553 7.789273 TTGTTTCTCATTGCACAATTTGAAT 57.211 28.000 2.79 0.00 0.00 2.57
553 554 7.789273 TGTTTCTCATTGCACAATTTGAATT 57.211 28.000 2.79 0.00 0.00 2.17
554 555 8.211116 TGTTTCTCATTGCACAATTTGAATTT 57.789 26.923 2.79 0.00 0.00 1.82
555 556 8.123575 TGTTTCTCATTGCACAATTTGAATTTG 58.876 29.630 2.79 0.00 0.00 2.32
556 557 6.788684 TCTCATTGCACAATTTGAATTTGG 57.211 33.333 2.79 0.00 0.00 3.28
557 558 6.522946 TCTCATTGCACAATTTGAATTTGGA 58.477 32.000 2.79 0.00 0.00 3.53
558 559 7.162761 TCTCATTGCACAATTTGAATTTGGAT 58.837 30.769 2.79 0.00 0.00 3.41
559 560 7.332430 TCTCATTGCACAATTTGAATTTGGATC 59.668 33.333 2.79 0.00 0.00 3.36
560 561 7.162761 TCATTGCACAATTTGAATTTGGATCT 58.837 30.769 2.79 0.00 0.00 2.75
561 562 6.788684 TTGCACAATTTGAATTTGGATCTG 57.211 33.333 2.79 0.00 0.00 2.90
562 563 6.099159 TGCACAATTTGAATTTGGATCTGA 57.901 33.333 2.79 0.00 0.00 3.27
563 564 6.703319 TGCACAATTTGAATTTGGATCTGAT 58.297 32.000 2.79 0.00 0.00 2.90
564 565 7.162761 TGCACAATTTGAATTTGGATCTGATT 58.837 30.769 2.79 0.00 0.00 2.57
565 566 7.662258 TGCACAATTTGAATTTGGATCTGATTT 59.338 29.630 2.79 0.00 0.00 2.17
566 567 8.508875 GCACAATTTGAATTTGGATCTGATTTT 58.491 29.630 2.79 0.00 0.00 1.82
588 589 6.926630 TTTTTAGGGCTTGTGGAAACATAT 57.073 33.333 0.00 0.00 46.14 1.78
589 590 5.913137 TTTAGGGCTTGTGGAAACATATG 57.087 39.130 0.00 0.00 46.14 1.78
590 591 2.738743 AGGGCTTGTGGAAACATATGG 58.261 47.619 7.80 0.00 46.14 2.74
591 592 2.042979 AGGGCTTGTGGAAACATATGGT 59.957 45.455 7.80 0.00 46.14 3.55
592 593 3.268334 AGGGCTTGTGGAAACATATGGTA 59.732 43.478 7.80 0.00 46.14 3.25
593 594 4.020543 GGGCTTGTGGAAACATATGGTAA 58.979 43.478 7.80 0.00 46.14 2.85
594 595 4.097892 GGGCTTGTGGAAACATATGGTAAG 59.902 45.833 7.80 1.77 46.14 2.34
595 596 4.947388 GGCTTGTGGAAACATATGGTAAGA 59.053 41.667 7.80 0.00 46.14 2.10
596 597 5.417580 GGCTTGTGGAAACATATGGTAAGAA 59.582 40.000 7.80 0.00 46.14 2.52
597 598 6.322491 GCTTGTGGAAACATATGGTAAGAAC 58.678 40.000 7.80 0.00 46.14 3.01
598 599 6.072175 GCTTGTGGAAACATATGGTAAGAACA 60.072 38.462 7.80 1.31 46.14 3.18
599 600 7.362920 GCTTGTGGAAACATATGGTAAGAACAT 60.363 37.037 7.80 0.00 46.14 2.71
600 601 8.415950 TTGTGGAAACATATGGTAAGAACATT 57.584 30.769 7.80 0.00 46.14 2.71
601 602 8.050778 TGTGGAAACATATGGTAAGAACATTC 57.949 34.615 7.80 0.00 46.14 2.67
602 603 7.667635 TGTGGAAACATATGGTAAGAACATTCA 59.332 33.333 7.80 0.00 46.14 2.57
603 604 8.686334 GTGGAAACATATGGTAAGAACATTCAT 58.314 33.333 7.80 0.00 46.14 2.57
604 605 8.685427 TGGAAACATATGGTAAGAACATTCATG 58.315 33.333 7.80 0.00 33.40 3.07
605 606 8.902806 GGAAACATATGGTAAGAACATTCATGA 58.097 33.333 7.80 0.00 0.00 3.07
679 680 9.823647 GATATCATGGGAGTATATAAGTGTTGG 57.176 37.037 0.00 0.00 0.00 3.77
680 681 7.633018 ATCATGGGAGTATATAAGTGTTGGT 57.367 36.000 0.00 0.00 0.00 3.67
681 682 8.736097 ATCATGGGAGTATATAAGTGTTGGTA 57.264 34.615 0.00 0.00 0.00 3.25
682 683 8.736097 TCATGGGAGTATATAAGTGTTGGTAT 57.264 34.615 0.00 0.00 0.00 2.73
683 684 8.812972 TCATGGGAGTATATAAGTGTTGGTATC 58.187 37.037 0.00 0.00 0.00 2.24
684 685 8.593679 CATGGGAGTATATAAGTGTTGGTATCA 58.406 37.037 0.00 0.00 0.00 2.15
685 686 8.736097 TGGGAGTATATAAGTGTTGGTATCAT 57.264 34.615 0.00 0.00 0.00 2.45
686 687 8.593679 TGGGAGTATATAAGTGTTGGTATCATG 58.406 37.037 0.00 0.00 0.00 3.07
687 688 8.594550 GGGAGTATATAAGTGTTGGTATCATGT 58.405 37.037 0.00 0.00 0.00 3.21
688 689 9.424319 GGAGTATATAAGTGTTGGTATCATGTG 57.576 37.037 0.00 0.00 0.00 3.21
697 698 8.668510 AGTGTTGGTATCATGTGATATTCTTC 57.331 34.615 6.04 0.00 39.03 2.87
698 699 7.716998 AGTGTTGGTATCATGTGATATTCTTCC 59.283 37.037 6.04 3.56 39.03 3.46
699 700 7.716998 GTGTTGGTATCATGTGATATTCTTCCT 59.283 37.037 6.04 0.00 39.03 3.36
700 701 8.933653 TGTTGGTATCATGTGATATTCTTCCTA 58.066 33.333 6.04 0.00 39.03 2.94
701 702 9.429359 GTTGGTATCATGTGATATTCTTCCTAG 57.571 37.037 6.04 0.00 39.03 3.02
702 703 8.956446 TGGTATCATGTGATATTCTTCCTAGA 57.044 34.615 6.04 0.00 39.03 2.43
703 704 9.552695 TGGTATCATGTGATATTCTTCCTAGAT 57.447 33.333 6.04 0.00 39.03 1.98
739 740 1.798813 GCGATTTTTCGATTGGGGCAG 60.799 52.381 0.00 0.00 34.64 4.85
751 752 0.035152 TGGGGCAGCATCTTACACAG 60.035 55.000 0.00 0.00 0.00 3.66
819 2119 0.605319 TGTTCCGGCAAGGCAGTAAG 60.605 55.000 0.00 0.00 40.77 2.34
1000 2300 0.970937 CGAACCCTGCTCCTCCTACA 60.971 60.000 0.00 0.00 0.00 2.74
1001 2301 0.537653 GAACCCTGCTCCTCCTACAC 59.462 60.000 0.00 0.00 0.00 2.90
1002 2302 1.258445 AACCCTGCTCCTCCTACACG 61.258 60.000 0.00 0.00 0.00 4.49
1003 2303 2.496817 CCTGCTCCTCCTACACGC 59.503 66.667 0.00 0.00 0.00 5.34
1004 2304 2.103143 CTGCTCCTCCTACACGCG 59.897 66.667 3.53 3.53 0.00 6.01
1005 2305 2.675423 TGCTCCTCCTACACGCGT 60.675 61.111 5.58 5.58 0.00 6.01
1006 2306 1.374343 CTGCTCCTCCTACACGCGTA 61.374 60.000 13.44 0.00 0.00 4.42
1119 2436 3.129502 CAGGACAGCCATGGCACG 61.130 66.667 37.18 28.61 44.88 5.34
1144 2461 1.678598 CTCTGCCTCTGCTCCTCCTG 61.679 65.000 0.00 0.00 38.71 3.86
1145 2462 3.388703 CTGCCTCTGCTCCTCCTGC 62.389 68.421 0.00 0.00 38.71 4.85
1185 2502 4.408821 GGCAGCACCCATCGTCCA 62.409 66.667 0.00 0.00 0.00 4.02
1249 2566 3.414700 CAGGACGTCGGCAGCAAC 61.415 66.667 9.92 0.00 0.00 4.17
1429 2746 1.134530 GCGACTGATGAACCGACGAG 61.135 60.000 0.00 0.00 0.00 4.18
1454 2771 4.139420 CGCGGTTTCTGCTGCTCG 62.139 66.667 0.00 0.00 38.54 5.03
1455 2772 3.044305 GCGGTTTCTGCTGCTCGT 61.044 61.111 0.00 0.00 37.74 4.18
1456 2773 2.607892 GCGGTTTCTGCTGCTCGTT 61.608 57.895 0.00 0.00 37.74 3.85
1457 2774 1.205064 CGGTTTCTGCTGCTCGTTG 59.795 57.895 0.00 0.00 0.00 4.10
1479 2796 1.522668 TGATGTCGCTGTTTCCTTGG 58.477 50.000 0.00 0.00 0.00 3.61
1517 2834 9.912634 TGAACTTTCCTTGACATGAATATTTTC 57.087 29.630 0.00 0.00 0.00 2.29
1559 2879 3.421231 GTGCTTCGATGTACTATACGTGC 59.579 47.826 11.47 0.00 0.00 5.34
1614 2939 1.039785 AGAGCGGCTGAGCAGTATCA 61.040 55.000 7.50 0.00 40.15 2.15
1621 2946 3.273434 GGCTGAGCAGTATCAAATGTGA 58.727 45.455 6.82 0.00 38.41 3.58
1670 3057 6.761714 CCCGTTTTAACACTATCTATTGAGCT 59.238 38.462 0.00 0.00 0.00 4.09
1671 3058 7.924412 CCCGTTTTAACACTATCTATTGAGCTA 59.076 37.037 0.00 0.00 0.00 3.32
1672 3059 8.753175 CCGTTTTAACACTATCTATTGAGCTAC 58.247 37.037 0.00 0.00 0.00 3.58
1673 3060 9.517609 CGTTTTAACACTATCTATTGAGCTACT 57.482 33.333 0.00 0.00 0.00 2.57
1676 3063 6.658188 AACACTATCTATTGAGCTACTCCC 57.342 41.667 0.00 0.00 0.00 4.30
1677 3064 5.959512 ACACTATCTATTGAGCTACTCCCT 58.040 41.667 0.00 0.00 0.00 4.20
1678 3065 6.007703 ACACTATCTATTGAGCTACTCCCTC 58.992 44.000 0.00 0.00 0.00 4.30
1679 3066 5.417580 CACTATCTATTGAGCTACTCCCTCC 59.582 48.000 0.00 0.00 0.00 4.30
1680 3067 2.865079 TCTATTGAGCTACTCCCTCCG 58.135 52.381 0.00 0.00 0.00 4.63
1681 3068 2.175069 TCTATTGAGCTACTCCCTCCGT 59.825 50.000 0.00 0.00 0.00 4.69
1682 3069 1.867363 ATTGAGCTACTCCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
1683 3070 1.640917 TTGAGCTACTCCCTCCGTTT 58.359 50.000 0.00 0.00 0.00 3.60
1684 3071 1.183549 TGAGCTACTCCCTCCGTTTC 58.816 55.000 0.00 0.00 0.00 2.78
1685 3072 1.272536 TGAGCTACTCCCTCCGTTTCT 60.273 52.381 0.00 0.00 0.00 2.52
1686 3073 2.025605 TGAGCTACTCCCTCCGTTTCTA 60.026 50.000 0.00 0.00 0.00 2.10
1687 3074 3.022406 GAGCTACTCCCTCCGTTTCTAA 58.978 50.000 0.00 0.00 0.00 2.10
1688 3075 3.438183 AGCTACTCCCTCCGTTTCTAAA 58.562 45.455 0.00 0.00 0.00 1.85
1689 3076 4.031611 AGCTACTCCCTCCGTTTCTAAAT 58.968 43.478 0.00 0.00 0.00 1.40
1690 3077 5.206587 AGCTACTCCCTCCGTTTCTAAATA 58.793 41.667 0.00 0.00 0.00 1.40
1691 3078 5.839606 AGCTACTCCCTCCGTTTCTAAATAT 59.160 40.000 0.00 0.00 0.00 1.28
1692 3079 6.326843 AGCTACTCCCTCCGTTTCTAAATATT 59.673 38.462 0.00 0.00 0.00 1.28
1693 3080 6.990939 GCTACTCCCTCCGTTTCTAAATATTT 59.009 38.462 5.89 5.89 0.00 1.40
1694 3081 7.041984 GCTACTCCCTCCGTTTCTAAATATTTG 60.042 40.741 11.05 1.65 0.00 2.32
1695 3082 6.954232 ACTCCCTCCGTTTCTAAATATTTGA 58.046 36.000 11.05 3.94 0.00 2.69
1696 3083 6.822170 ACTCCCTCCGTTTCTAAATATTTGAC 59.178 38.462 11.05 3.92 0.00 3.18
1697 3084 6.117488 TCCCTCCGTTTCTAAATATTTGACC 58.883 40.000 11.05 0.51 0.00 4.02
1698 3085 6.069847 TCCCTCCGTTTCTAAATATTTGACCT 60.070 38.462 11.05 0.00 0.00 3.85
1699 3086 6.602009 CCCTCCGTTTCTAAATATTTGACCTT 59.398 38.462 11.05 0.00 0.00 3.50
1700 3087 7.122204 CCCTCCGTTTCTAAATATTTGACCTTT 59.878 37.037 11.05 0.00 0.00 3.11
1701 3088 8.520351 CCTCCGTTTCTAAATATTTGACCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
1716 3103 9.933723 ATTTGACCTTTTAGAGATTTCAAATGG 57.066 29.630 5.98 9.43 37.54 3.16
1717 3104 8.704849 TTGACCTTTTAGAGATTTCAAATGGA 57.295 30.769 14.18 0.00 33.16 3.41
1718 3105 8.110860 TGACCTTTTAGAGATTTCAAATGGAC 57.889 34.615 14.18 10.82 33.16 4.02
1719 3106 7.944554 TGACCTTTTAGAGATTTCAAATGGACT 59.055 33.333 14.18 0.00 33.16 3.85
1720 3107 9.449719 GACCTTTTAGAGATTTCAAATGGACTA 57.550 33.333 14.18 0.00 33.16 2.59
1721 3108 9.232473 ACCTTTTAGAGATTTCAAATGGACTAC 57.768 33.333 14.18 0.00 33.16 2.73
1722 3109 8.678199 CCTTTTAGAGATTTCAAATGGACTACC 58.322 37.037 0.00 0.00 31.44 3.18
1776 3163 8.854614 AAGTGTAGATTTACTGATTTTGCTCT 57.145 30.769 0.00 0.00 0.00 4.09
1777 3164 8.261492 AGTGTAGATTTACTGATTTTGCTCTG 57.739 34.615 0.00 0.00 0.00 3.35
1778 3165 7.880195 AGTGTAGATTTACTGATTTTGCTCTGT 59.120 33.333 0.00 0.00 0.00 3.41
1779 3166 7.959651 GTGTAGATTTACTGATTTTGCTCTGTG 59.040 37.037 0.00 0.00 0.00 3.66
1780 3167 7.661437 TGTAGATTTACTGATTTTGCTCTGTGT 59.339 33.333 0.00 0.00 0.00 3.72
1781 3168 6.906659 AGATTTACTGATTTTGCTCTGTGTG 58.093 36.000 0.00 0.00 0.00 3.82
1782 3169 6.488006 AGATTTACTGATTTTGCTCTGTGTGT 59.512 34.615 0.00 0.00 0.00 3.72
1783 3170 7.661437 AGATTTACTGATTTTGCTCTGTGTGTA 59.339 33.333 0.00 0.00 0.00 2.90
1784 3171 6.785488 TTACTGATTTTGCTCTGTGTGTAG 57.215 37.500 0.00 0.00 0.00 2.74
1785 3172 4.708177 ACTGATTTTGCTCTGTGTGTAGT 58.292 39.130 0.00 0.00 0.00 2.73
1786 3173 4.752101 ACTGATTTTGCTCTGTGTGTAGTC 59.248 41.667 0.00 0.00 0.00 2.59
1787 3174 4.702831 TGATTTTGCTCTGTGTGTAGTCA 58.297 39.130 0.00 0.00 0.00 3.41
1788 3175 5.308014 TGATTTTGCTCTGTGTGTAGTCAT 58.692 37.500 0.00 0.00 0.00 3.06
1789 3176 5.764686 TGATTTTGCTCTGTGTGTAGTCATT 59.235 36.000 0.00 0.00 0.00 2.57
1790 3177 6.262944 TGATTTTGCTCTGTGTGTAGTCATTT 59.737 34.615 0.00 0.00 0.00 2.32
1791 3178 5.422666 TTTGCTCTGTGTGTAGTCATTTG 57.577 39.130 0.00 0.00 0.00 2.32
1792 3179 4.071961 TGCTCTGTGTGTAGTCATTTGT 57.928 40.909 0.00 0.00 0.00 2.83
1793 3180 4.450976 TGCTCTGTGTGTAGTCATTTGTT 58.549 39.130 0.00 0.00 0.00 2.83
1794 3181 5.606505 TGCTCTGTGTGTAGTCATTTGTTA 58.393 37.500 0.00 0.00 0.00 2.41
1795 3182 6.052360 TGCTCTGTGTGTAGTCATTTGTTAA 58.948 36.000 0.00 0.00 0.00 2.01
1796 3183 6.540551 TGCTCTGTGTGTAGTCATTTGTTAAA 59.459 34.615 0.00 0.00 0.00 1.52
1797 3184 7.066404 TGCTCTGTGTGTAGTCATTTGTTAAAA 59.934 33.333 0.00 0.00 0.00 1.52
1798 3185 8.076178 GCTCTGTGTGTAGTCATTTGTTAAAAT 58.924 33.333 0.00 0.00 36.39 1.82
1799 3186 9.599322 CTCTGTGTGTAGTCATTTGTTAAAATC 57.401 33.333 0.00 0.00 33.59 2.17
1800 3187 9.337396 TCTGTGTGTAGTCATTTGTTAAAATCT 57.663 29.630 0.00 0.00 33.59 2.40
1801 3188 9.599322 CTGTGTGTAGTCATTTGTTAAAATCTC 57.401 33.333 0.00 0.00 33.59 2.75
1802 3189 9.337396 TGTGTGTAGTCATTTGTTAAAATCTCT 57.663 29.630 0.00 0.00 33.59 3.10
1830 3217 8.459911 AAATACAAATATTTAGGAACGGAGGG 57.540 34.615 0.00 0.00 38.89 4.30
1831 3218 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
1832 3219 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1833 3220 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1834 3221 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1835 3222 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
1836 3223 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
1837 3224 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
1866 3254 2.751166 ATGATCTACTGCCGCCATAC 57.249 50.000 0.00 0.00 0.00 2.39
1879 3267 1.878088 CGCCATACCTACGAAGAGCTA 59.122 52.381 0.00 0.00 0.00 3.32
1880 3268 2.488545 CGCCATACCTACGAAGAGCTAT 59.511 50.000 0.00 0.00 0.00 2.97
1881 3269 3.057456 CGCCATACCTACGAAGAGCTATT 60.057 47.826 0.00 0.00 0.00 1.73
1884 3273 5.704888 CCATACCTACGAAGAGCTATTCTG 58.295 45.833 18.33 13.78 35.91 3.02
1887 3276 3.633065 ACCTACGAAGAGCTATTCTGGTC 59.367 47.826 18.33 0.00 35.91 4.02
1891 3280 2.287308 CGAAGAGCTATTCTGGTCCTCG 60.287 54.545 18.33 0.01 40.37 4.63
1892 3281 1.036707 AGAGCTATTCTGGTCCTCGC 58.963 55.000 0.00 0.00 33.93 5.03
1987 3377 3.639561 TCAGCACGGCCAGAACTAATATA 59.360 43.478 2.24 0.00 0.00 0.86
1997 3387 5.180117 GCCAGAACTAATATACCTGTGCATG 59.820 44.000 0.00 0.00 0.00 4.06
2004 3394 2.795231 ATACCTGTGCATGCAGAACT 57.205 45.000 23.41 9.86 38.70 3.01
2005 3395 1.812235 TACCTGTGCATGCAGAACTG 58.188 50.000 23.41 13.43 38.70 3.16
2006 3396 0.109153 ACCTGTGCATGCAGAACTGA 59.891 50.000 23.41 0.00 38.70 3.41
2007 3397 1.271762 ACCTGTGCATGCAGAACTGAT 60.272 47.619 23.41 0.00 38.70 2.90
2008 3398 1.132453 CCTGTGCATGCAGAACTGATG 59.868 52.381 23.41 6.58 38.70 3.07
2009 3399 2.081462 CTGTGCATGCAGAACTGATGA 58.919 47.619 23.41 0.00 38.70 2.92
2010 3400 2.081462 TGTGCATGCAGAACTGATGAG 58.919 47.619 23.41 0.00 0.00 2.90
2061 3454 0.390860 GGATGGAGGATGTGAGGTCG 59.609 60.000 0.00 0.00 0.00 4.79
2070 3463 0.896940 ATGTGAGGTCGTACCGGTGT 60.897 55.000 19.93 0.00 44.90 4.16
2095 3488 6.604930 GCATTTGCAAGCATTTTTAATGAGT 58.395 32.000 16.37 0.00 41.59 3.41
2103 3503 7.592164 GCAAGCATTTTTAATGAGTTTTTGCAT 59.408 29.630 3.70 0.00 36.83 3.96
2106 3506 8.077386 AGCATTTTTAATGAGTTTTTGCATTGG 58.923 29.630 3.70 0.00 36.27 3.16
2109 3509 2.083167 ATGAGTTTTTGCATTGGCGG 57.917 45.000 0.00 0.00 45.35 6.13
2112 3512 0.249826 AGTTTTTGCATTGGCGGTGG 60.250 50.000 0.00 0.00 45.35 4.61
2146 3548 1.786937 TGGTGTTGCAGGTTCCAAAT 58.213 45.000 0.00 0.00 0.00 2.32
2165 3693 4.833478 AATCAGCAGTTCTCTACATGGT 57.167 40.909 0.00 0.00 0.00 3.55
2246 3818 2.327568 CAAAATGAAGGAACGCGCAAT 58.672 42.857 5.73 0.00 0.00 3.56
2247 3819 2.723124 AAATGAAGGAACGCGCAATT 57.277 40.000 5.73 0.00 0.00 2.32
2248 3820 2.262572 AATGAAGGAACGCGCAATTC 57.737 45.000 5.73 10.69 0.00 2.17
2266 3838 2.941453 TCTTCTGTAGTAAGCTGGCG 57.059 50.000 0.00 0.00 0.00 5.69
2312 3884 1.154016 CGGTAGCTGGAGACGTGTG 60.154 63.158 0.00 0.00 0.00 3.82
2326 3898 2.666508 GACGTGTGTTGGCACTAGTATG 59.333 50.000 0.00 0.00 45.44 2.39
2327 3899 1.999735 CGTGTGTTGGCACTAGTATGG 59.000 52.381 0.00 0.00 45.44 2.74
2329 3901 3.262420 GTGTGTTGGCACTAGTATGGAG 58.738 50.000 0.00 0.00 45.44 3.86
2385 3957 5.486526 CTCTCAAATGTTCTTCAGGTAGCT 58.513 41.667 0.00 0.00 0.00 3.32
2409 3981 7.646922 GCTGTTTTATTTCAGGATATTCTGCTG 59.353 37.037 6.09 0.00 44.23 4.41
2415 3987 4.307443 TCAGGATATTCTGCTGTGTACG 57.693 45.455 6.09 0.00 43.39 3.67
2437 4009 0.625316 TAGGTGCAATCATGGGCAGT 59.375 50.000 7.68 2.65 41.35 4.40
2438 4010 0.682209 AGGTGCAATCATGGGCAGTC 60.682 55.000 7.68 4.68 41.35 3.51
2439 4011 0.682209 GGTGCAATCATGGGCAGTCT 60.682 55.000 7.68 0.00 41.35 3.24
2440 4012 0.454600 GTGCAATCATGGGCAGTCTG 59.545 55.000 7.68 0.00 41.35 3.51
2441 4013 0.038599 TGCAATCATGGGCAGTCTGT 59.961 50.000 0.93 0.00 34.58 3.41
2442 4014 1.281577 TGCAATCATGGGCAGTCTGTA 59.718 47.619 0.93 0.00 34.58 2.74
2443 4015 1.672881 GCAATCATGGGCAGTCTGTAC 59.327 52.381 0.93 0.00 0.00 2.90
2500 4072 9.288576 TGACATCAGTTCCCATCAAATATTATC 57.711 33.333 0.00 0.00 0.00 1.75
2542 4114 0.250858 TGAGCTCATTGTGGGGTGTG 60.251 55.000 13.74 0.00 0.00 3.82
2556 4128 2.997315 TGTGCTGGACCCTCTCCG 60.997 66.667 0.00 0.00 43.03 4.63
2557 4129 2.680352 GTGCTGGACCCTCTCCGA 60.680 66.667 0.00 0.00 43.03 4.55
2559 4131 1.306141 TGCTGGACCCTCTCCGAAT 60.306 57.895 0.00 0.00 43.03 3.34
2560 4132 0.909610 TGCTGGACCCTCTCCGAATT 60.910 55.000 0.00 0.00 43.03 2.17
2561 4133 0.253327 GCTGGACCCTCTCCGAATTT 59.747 55.000 0.00 0.00 43.03 1.82
2562 4134 1.744114 GCTGGACCCTCTCCGAATTTC 60.744 57.143 0.00 0.00 43.03 2.17
2563 4135 1.834263 CTGGACCCTCTCCGAATTTCT 59.166 52.381 0.00 0.00 43.03 2.52
2564 4136 1.555075 TGGACCCTCTCCGAATTTCTG 59.445 52.381 0.00 0.00 43.03 3.02
2565 4137 1.657822 GACCCTCTCCGAATTTCTGC 58.342 55.000 0.00 0.00 0.00 4.26
2566 4138 0.984230 ACCCTCTCCGAATTTCTGCA 59.016 50.000 0.00 0.00 0.00 4.41
2567 4139 1.351017 ACCCTCTCCGAATTTCTGCAA 59.649 47.619 0.00 0.00 0.00 4.08
2568 4140 2.012673 CCCTCTCCGAATTTCTGCAAG 58.987 52.381 0.00 0.00 0.00 4.01
2569 4141 1.399791 CCTCTCCGAATTTCTGCAAGC 59.600 52.381 0.00 0.00 0.00 4.01
2570 4142 2.354259 CTCTCCGAATTTCTGCAAGCT 58.646 47.619 0.00 0.00 0.00 3.74
2571 4143 2.746362 CTCTCCGAATTTCTGCAAGCTT 59.254 45.455 0.00 0.00 0.00 3.74
2572 4144 2.744202 TCTCCGAATTTCTGCAAGCTTC 59.256 45.455 0.00 0.00 0.00 3.86
2573 4145 1.464608 TCCGAATTTCTGCAAGCTTCG 59.535 47.619 0.00 11.32 38.71 3.79
2574 4146 1.197721 CCGAATTTCTGCAAGCTTCGT 59.802 47.619 15.00 0.00 37.93 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.104530 GACTTCGGTAGCGAGCCC 59.895 66.667 17.37 6.64 0.00 5.19
1 2 1.226717 CTGACTTCGGTAGCGAGCC 60.227 63.158 17.37 10.75 0.00 4.70
2 3 0.523757 GTCTGACTTCGGTAGCGAGC 60.524 60.000 17.37 11.33 0.00 5.03
3 4 0.803117 TGTCTGACTTCGGTAGCGAG 59.197 55.000 17.37 13.52 0.00 5.03
4 5 1.132453 CATGTCTGACTTCGGTAGCGA 59.868 52.381 13.94 13.94 0.00 4.93
5 6 1.550065 CATGTCTGACTTCGGTAGCG 58.450 55.000 8.29 8.29 0.00 4.26
6 7 1.204941 ACCATGTCTGACTTCGGTAGC 59.795 52.381 9.51 0.00 0.00 3.58
7 8 2.417379 CCACCATGTCTGACTTCGGTAG 60.417 54.545 9.51 2.68 0.00 3.18
8 9 1.548719 CCACCATGTCTGACTTCGGTA 59.451 52.381 9.51 0.00 0.00 4.02
9 10 0.321671 CCACCATGTCTGACTTCGGT 59.678 55.000 9.51 9.54 0.00 4.69
10 11 1.021390 GCCACCATGTCTGACTTCGG 61.021 60.000 9.51 8.93 0.00 4.30
11 12 1.354337 CGCCACCATGTCTGACTTCG 61.354 60.000 9.51 0.00 0.00 3.79
12 13 1.639298 GCGCCACCATGTCTGACTTC 61.639 60.000 9.51 0.00 0.00 3.01
13 14 1.672356 GCGCCACCATGTCTGACTT 60.672 57.895 9.51 0.00 0.00 3.01
14 15 2.046892 GCGCCACCATGTCTGACT 60.047 61.111 9.51 0.00 0.00 3.41
15 16 1.672356 AAGCGCCACCATGTCTGAC 60.672 57.895 2.29 0.00 0.00 3.51
16 17 1.672030 CAAGCGCCACCATGTCTGA 60.672 57.895 2.29 0.00 0.00 3.27
17 18 2.693762 CCAAGCGCCACCATGTCTG 61.694 63.158 2.29 0.00 0.00 3.51
18 19 2.360350 CCAAGCGCCACCATGTCT 60.360 61.111 2.29 0.00 0.00 3.41
19 20 1.926511 CTTCCAAGCGCCACCATGTC 61.927 60.000 2.29 0.00 0.00 3.06
20 21 1.973281 CTTCCAAGCGCCACCATGT 60.973 57.895 2.29 0.00 0.00 3.21
21 22 2.703798 CCTTCCAAGCGCCACCATG 61.704 63.158 2.29 0.00 0.00 3.66
22 23 1.847798 TACCTTCCAAGCGCCACCAT 61.848 55.000 2.29 0.00 0.00 3.55
23 24 2.521451 TACCTTCCAAGCGCCACCA 61.521 57.895 2.29 0.00 0.00 4.17
24 25 2.038837 GTACCTTCCAAGCGCCACC 61.039 63.158 2.29 0.00 0.00 4.61
25 26 2.388232 CGTACCTTCCAAGCGCCAC 61.388 63.158 2.29 0.00 0.00 5.01
26 27 2.047655 CGTACCTTCCAAGCGCCA 60.048 61.111 2.29 0.00 0.00 5.69
27 28 2.818274 CCGTACCTTCCAAGCGCC 60.818 66.667 2.29 0.00 0.00 6.53
28 29 2.098831 GTCCGTACCTTCCAAGCGC 61.099 63.158 0.00 0.00 0.00 5.92
29 30 1.012486 GTGTCCGTACCTTCCAAGCG 61.012 60.000 0.00 0.00 0.00 4.68
30 31 0.034337 TGTGTCCGTACCTTCCAAGC 59.966 55.000 0.00 0.00 0.00 4.01
31 32 2.536761 TTGTGTCCGTACCTTCCAAG 57.463 50.000 0.00 0.00 0.00 3.61
32 33 2.563702 GTTTGTGTCCGTACCTTCCAA 58.436 47.619 0.00 0.00 0.00 3.53
33 34 1.202675 GGTTTGTGTCCGTACCTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
34 35 1.516161 GGTTTGTGTCCGTACCTTCC 58.484 55.000 0.00 0.00 0.00 3.46
35 36 1.142474 CGGTTTGTGTCCGTACCTTC 58.858 55.000 0.00 0.00 42.62 3.46
36 37 0.752054 TCGGTTTGTGTCCGTACCTT 59.248 50.000 4.36 0.00 46.86 3.50
37 38 0.752054 TTCGGTTTGTGTCCGTACCT 59.248 50.000 4.36 0.00 46.86 3.08
38 39 1.142474 CTTCGGTTTGTGTCCGTACC 58.858 55.000 4.36 0.00 46.86 3.34
39 40 0.509929 GCTTCGGTTTGTGTCCGTAC 59.490 55.000 4.36 0.00 46.86 3.67
40 41 0.940519 CGCTTCGGTTTGTGTCCGTA 60.941 55.000 4.36 0.00 46.86 4.02
41 42 2.241880 CGCTTCGGTTTGTGTCCGT 61.242 57.895 4.36 0.00 46.86 4.69
43 44 0.658897 TTTCGCTTCGGTTTGTGTCC 59.341 50.000 0.00 0.00 0.00 4.02
44 45 1.062880 TGTTTCGCTTCGGTTTGTGTC 59.937 47.619 0.00 0.00 0.00 3.67
45 46 1.088306 TGTTTCGCTTCGGTTTGTGT 58.912 45.000 0.00 0.00 0.00 3.72
46 47 2.043411 CATGTTTCGCTTCGGTTTGTG 58.957 47.619 0.00 0.00 0.00 3.33
47 48 1.944024 TCATGTTTCGCTTCGGTTTGT 59.056 42.857 0.00 0.00 0.00 2.83
48 49 2.679355 TCATGTTTCGCTTCGGTTTG 57.321 45.000 0.00 0.00 0.00 2.93
49 50 2.031157 CCTTCATGTTTCGCTTCGGTTT 60.031 45.455 0.00 0.00 0.00 3.27
50 51 1.535462 CCTTCATGTTTCGCTTCGGTT 59.465 47.619 0.00 0.00 0.00 4.44
51 52 1.156736 CCTTCATGTTTCGCTTCGGT 58.843 50.000 0.00 0.00 0.00 4.69
52 53 1.438651 TCCTTCATGTTTCGCTTCGG 58.561 50.000 0.00 0.00 0.00 4.30
53 54 2.480419 ACTTCCTTCATGTTTCGCTTCG 59.520 45.455 0.00 0.00 0.00 3.79
54 55 3.498397 TCACTTCCTTCATGTTTCGCTTC 59.502 43.478 0.00 0.00 0.00 3.86
55 56 3.476552 TCACTTCCTTCATGTTTCGCTT 58.523 40.909 0.00 0.00 0.00 4.68
56 57 3.126001 TCACTTCCTTCATGTTTCGCT 57.874 42.857 0.00 0.00 0.00 4.93
57 58 3.814945 CTTCACTTCCTTCATGTTTCGC 58.185 45.455 0.00 0.00 0.00 4.70
58 59 3.365364 GGCTTCACTTCCTTCATGTTTCG 60.365 47.826 0.00 0.00 0.00 3.46
59 60 3.365364 CGGCTTCACTTCCTTCATGTTTC 60.365 47.826 0.00 0.00 0.00 2.78
60 61 2.554032 CGGCTTCACTTCCTTCATGTTT 59.446 45.455 0.00 0.00 0.00 2.83
61 62 2.154462 CGGCTTCACTTCCTTCATGTT 58.846 47.619 0.00 0.00 0.00 2.71
62 63 1.611673 CCGGCTTCACTTCCTTCATGT 60.612 52.381 0.00 0.00 0.00 3.21
63 64 1.089920 CCGGCTTCACTTCCTTCATG 58.910 55.000 0.00 0.00 0.00 3.07
64 65 0.678048 GCCGGCTTCACTTCCTTCAT 60.678 55.000 22.15 0.00 0.00 2.57
65 66 1.302511 GCCGGCTTCACTTCCTTCA 60.303 57.895 22.15 0.00 0.00 3.02
66 67 0.889186 TTGCCGGCTTCACTTCCTTC 60.889 55.000 29.70 0.00 0.00 3.46
67 68 0.890996 CTTGCCGGCTTCACTTCCTT 60.891 55.000 29.70 0.00 0.00 3.36
68 69 1.302832 CTTGCCGGCTTCACTTCCT 60.303 57.895 29.70 0.00 0.00 3.36
69 70 1.301677 CTCTTGCCGGCTTCACTTCC 61.302 60.000 29.70 0.00 0.00 3.46
70 71 0.603975 ACTCTTGCCGGCTTCACTTC 60.604 55.000 29.70 0.00 0.00 3.01
71 72 0.886490 CACTCTTGCCGGCTTCACTT 60.886 55.000 29.70 4.45 0.00 3.16
72 73 1.302033 CACTCTTGCCGGCTTCACT 60.302 57.895 29.70 4.13 0.00 3.41
73 74 0.674895 ATCACTCTTGCCGGCTTCAC 60.675 55.000 29.70 0.00 0.00 3.18
74 75 0.901827 TATCACTCTTGCCGGCTTCA 59.098 50.000 29.70 10.82 0.00 3.02
75 76 1.576356 CTATCACTCTTGCCGGCTTC 58.424 55.000 29.70 0.00 0.00 3.86
76 77 0.179000 CCTATCACTCTTGCCGGCTT 59.821 55.000 29.70 3.41 0.00 4.35
77 78 1.690219 CCCTATCACTCTTGCCGGCT 61.690 60.000 29.70 6.93 0.00 5.52
78 79 1.227674 CCCTATCACTCTTGCCGGC 60.228 63.158 22.73 22.73 0.00 6.13
79 80 0.541863 AACCCTATCACTCTTGCCGG 59.458 55.000 0.00 0.00 0.00 6.13
80 81 2.009774 CAAACCCTATCACTCTTGCCG 58.990 52.381 0.00 0.00 0.00 5.69
81 82 3.350219 TCAAACCCTATCACTCTTGCC 57.650 47.619 0.00 0.00 0.00 4.52
82 83 3.879892 GGATCAAACCCTATCACTCTTGC 59.120 47.826 0.00 0.00 0.00 4.01
83 84 4.122776 CGGATCAAACCCTATCACTCTTG 58.877 47.826 0.00 0.00 0.00 3.02
84 85 4.030913 TCGGATCAAACCCTATCACTCTT 58.969 43.478 0.00 0.00 0.00 2.85
85 86 3.643237 TCGGATCAAACCCTATCACTCT 58.357 45.455 0.00 0.00 0.00 3.24
94 95 2.137810 TTCCCAATCGGATCAAACCC 57.862 50.000 0.00 0.00 41.63 4.11
110 111 3.023832 CACATAAACCCCACCTCATTCC 58.976 50.000 0.00 0.00 0.00 3.01
204 205 6.039047 CCTTGAATCCAACTCATGTTAGATGG 59.961 42.308 4.77 4.77 39.99 3.51
209 210 5.512942 TCCCTTGAATCCAACTCATGTTA 57.487 39.130 0.00 0.00 34.60 2.41
210 211 4.387026 TCCCTTGAATCCAACTCATGTT 57.613 40.909 0.00 0.00 36.75 2.71
260 261 6.520021 TCATGTGATATTCTCCCCTCAAAT 57.480 37.500 0.00 0.00 0.00 2.32
262 263 6.013379 GGTATCATGTGATATTCTCCCCTCAA 60.013 42.308 6.04 0.00 39.03 3.02
263 264 5.485353 GGTATCATGTGATATTCTCCCCTCA 59.515 44.000 6.04 0.00 39.03 3.86
264 265 5.485353 TGGTATCATGTGATATTCTCCCCTC 59.515 44.000 6.04 0.00 39.03 4.30
265 266 5.415065 TGGTATCATGTGATATTCTCCCCT 58.585 41.667 6.04 0.00 39.03 4.79
266 267 5.762179 TGGTATCATGTGATATTCTCCCC 57.238 43.478 6.04 2.96 39.03 4.81
267 268 6.428159 GTGTTGGTATCATGTGATATTCTCCC 59.572 42.308 6.04 3.56 39.03 4.30
268 269 7.220030 AGTGTTGGTATCATGTGATATTCTCC 58.780 38.462 6.04 3.87 39.03 3.71
269 270 8.668510 AAGTGTTGGTATCATGTGATATTCTC 57.331 34.615 6.04 0.00 39.03 2.87
274 275 9.435688 GCATATAAGTGTTGGTATCATGTGATA 57.564 33.333 0.00 0.00 36.05 2.15
275 276 8.159447 AGCATATAAGTGTTGGTATCATGTGAT 58.841 33.333 0.68 0.68 38.51 3.06
276 277 7.508687 AGCATATAAGTGTTGGTATCATGTGA 58.491 34.615 0.00 0.00 0.00 3.58
277 278 7.095060 GGAGCATATAAGTGTTGGTATCATGTG 60.095 40.741 0.00 0.00 0.00 3.21
278 279 6.936900 GGAGCATATAAGTGTTGGTATCATGT 59.063 38.462 0.00 0.00 0.00 3.21
279 280 6.372659 GGGAGCATATAAGTGTTGGTATCATG 59.627 42.308 0.00 0.00 0.00 3.07
280 281 6.044287 TGGGAGCATATAAGTGTTGGTATCAT 59.956 38.462 0.00 0.00 0.00 2.45
281 282 5.368230 TGGGAGCATATAAGTGTTGGTATCA 59.632 40.000 0.00 0.00 0.00 2.15
282 283 5.865085 TGGGAGCATATAAGTGTTGGTATC 58.135 41.667 0.00 0.00 0.00 2.24
283 284 5.904984 TGGGAGCATATAAGTGTTGGTAT 57.095 39.130 0.00 0.00 0.00 2.73
284 285 5.368230 TCATGGGAGCATATAAGTGTTGGTA 59.632 40.000 0.00 0.00 0.00 3.25
285 286 4.165950 TCATGGGAGCATATAAGTGTTGGT 59.834 41.667 0.00 0.00 0.00 3.67
286 287 4.717877 TCATGGGAGCATATAAGTGTTGG 58.282 43.478 0.00 0.00 0.00 3.77
287 288 6.372659 GGTATCATGGGAGCATATAAGTGTTG 59.627 42.308 0.00 0.00 0.00 3.33
288 289 6.044287 TGGTATCATGGGAGCATATAAGTGTT 59.956 38.462 0.00 0.00 0.00 3.32
289 290 5.547666 TGGTATCATGGGAGCATATAAGTGT 59.452 40.000 0.00 0.00 0.00 3.55
290 291 6.053632 TGGTATCATGGGAGCATATAAGTG 57.946 41.667 0.00 0.00 0.00 3.16
291 292 6.702449 TTGGTATCATGGGAGCATATAAGT 57.298 37.500 0.00 0.00 0.00 2.24
292 293 8.464404 CAAATTGGTATCATGGGAGCATATAAG 58.536 37.037 0.00 0.00 0.00 1.73
293 294 8.169393 TCAAATTGGTATCATGGGAGCATATAA 58.831 33.333 0.00 0.00 0.00 0.98
294 295 7.697946 TCAAATTGGTATCATGGGAGCATATA 58.302 34.615 0.00 0.00 0.00 0.86
295 296 6.554784 TCAAATTGGTATCATGGGAGCATAT 58.445 36.000 0.00 0.00 0.00 1.78
296 297 5.951204 TCAAATTGGTATCATGGGAGCATA 58.049 37.500 0.00 0.00 0.00 3.14
297 298 4.806892 TCAAATTGGTATCATGGGAGCAT 58.193 39.130 0.00 0.00 0.00 3.79
298 299 4.248174 TCAAATTGGTATCATGGGAGCA 57.752 40.909 0.00 0.00 0.00 4.26
299 300 5.596836 TTTCAAATTGGTATCATGGGAGC 57.403 39.130 0.00 0.00 0.00 4.70
300 301 9.101655 GAATTTTTCAAATTGGTATCATGGGAG 57.898 33.333 0.00 0.00 0.00 4.30
301 302 8.600668 TGAATTTTTCAAATTGGTATCATGGGA 58.399 29.630 0.00 0.00 36.59 4.37
302 303 8.789825 TGAATTTTTCAAATTGGTATCATGGG 57.210 30.769 0.00 0.00 36.59 4.00
367 368 6.368791 GCTTGTAGACACATATGTTGAGAACA 59.631 38.462 5.37 4.83 39.95 3.18
368 369 6.183360 GGCTTGTAGACACATATGTTGAGAAC 60.183 42.308 5.37 2.24 39.95 3.01
369 370 5.874810 GGCTTGTAGACACATATGTTGAGAA 59.125 40.000 5.37 0.00 39.95 2.87
370 371 5.419542 GGCTTGTAGACACATATGTTGAGA 58.580 41.667 5.37 0.00 39.95 3.27
371 372 4.572389 GGGCTTGTAGACACATATGTTGAG 59.428 45.833 5.37 0.00 39.95 3.02
372 373 4.225042 AGGGCTTGTAGACACATATGTTGA 59.775 41.667 5.37 0.00 39.95 3.18
373 374 4.517285 AGGGCTTGTAGACACATATGTTG 58.483 43.478 5.37 4.77 39.95 3.33
374 375 4.844349 AGGGCTTGTAGACACATATGTT 57.156 40.909 5.37 0.00 39.95 2.71
375 376 5.950544 TTAGGGCTTGTAGACACATATGT 57.049 39.130 1.41 1.41 43.71 2.29
376 377 7.624360 TTTTTAGGGCTTGTAGACACATATG 57.376 36.000 0.00 0.00 33.76 1.78
400 401 9.559732 TGTGTATATCGAATTTGGATCTGATTT 57.440 29.630 0.00 0.00 0.00 2.17
401 402 9.730705 ATGTGTATATCGAATTTGGATCTGATT 57.269 29.630 0.00 0.00 0.00 2.57
402 403 9.730705 AATGTGTATATCGAATTTGGATCTGAT 57.269 29.630 0.00 0.00 0.00 2.90
403 404 8.992073 CAATGTGTATATCGAATTTGGATCTGA 58.008 33.333 0.00 0.00 0.00 3.27
404 405 8.992073 TCAATGTGTATATCGAATTTGGATCTG 58.008 33.333 0.00 0.00 0.00 2.90
405 406 8.993121 GTCAATGTGTATATCGAATTTGGATCT 58.007 33.333 0.00 0.00 0.00 2.75
406 407 8.773645 TGTCAATGTGTATATCGAATTTGGATC 58.226 33.333 0.00 0.00 0.00 3.36
407 408 8.675705 TGTCAATGTGTATATCGAATTTGGAT 57.324 30.769 0.00 0.00 0.00 3.41
408 409 8.499403 TTGTCAATGTGTATATCGAATTTGGA 57.501 30.769 0.00 0.00 0.00 3.53
409 410 9.009327 GTTTGTCAATGTGTATATCGAATTTGG 57.991 33.333 0.00 0.00 0.00 3.28
410 411 9.553418 TGTTTGTCAATGTGTATATCGAATTTG 57.447 29.630 0.00 0.00 0.00 2.32
414 415 9.952188 TTTTTGTTTGTCAATGTGTATATCGAA 57.048 25.926 0.00 0.00 35.84 3.71
442 443 9.561069 ACTACACTATTCACAACAGATTTTTCT 57.439 29.630 0.00 0.00 0.00 2.52
489 490 8.453320 CAGCATGAATAGTGTCAATAAAGACAA 58.547 33.333 0.00 0.00 44.70 3.18
490 491 7.823799 TCAGCATGAATAGTGTCAATAAAGACA 59.176 33.333 0.00 0.00 45.97 3.41
491 492 8.201554 TCAGCATGAATAGTGTCAATAAAGAC 57.798 34.615 0.00 0.00 45.97 3.01
525 526 8.037382 TCAAATTGTGCAATGAGAAACAAAAA 57.963 26.923 0.00 0.00 36.23 1.94
526 527 7.606858 TCAAATTGTGCAATGAGAAACAAAA 57.393 28.000 0.00 0.00 36.23 2.44
527 528 7.606858 TTCAAATTGTGCAATGAGAAACAAA 57.393 28.000 0.00 0.00 36.23 2.83
528 529 7.789273 ATTCAAATTGTGCAATGAGAAACAA 57.211 28.000 12.78 0.00 36.98 2.83
529 530 7.789273 AATTCAAATTGTGCAATGAGAAACA 57.211 28.000 12.78 0.00 32.22 2.83
530 531 7.588488 CCAAATTCAAATTGTGCAATGAGAAAC 59.412 33.333 12.78 0.00 32.22 2.78
531 532 7.498239 TCCAAATTCAAATTGTGCAATGAGAAA 59.502 29.630 12.78 2.53 32.22 2.52
532 533 6.990939 TCCAAATTCAAATTGTGCAATGAGAA 59.009 30.769 11.78 11.78 32.66 2.87
533 534 6.522946 TCCAAATTCAAATTGTGCAATGAGA 58.477 32.000 0.00 0.00 0.00 3.27
534 535 6.788684 TCCAAATTCAAATTGTGCAATGAG 57.211 33.333 0.00 0.00 0.00 2.90
535 536 7.118535 CAGATCCAAATTCAAATTGTGCAATGA 59.881 33.333 0.00 0.00 0.00 2.57
536 537 7.118535 TCAGATCCAAATTCAAATTGTGCAATG 59.881 33.333 0.00 0.00 0.00 2.82
537 538 7.162761 TCAGATCCAAATTCAAATTGTGCAAT 58.837 30.769 0.00 0.00 0.00 3.56
538 539 6.522946 TCAGATCCAAATTCAAATTGTGCAA 58.477 32.000 0.00 0.00 0.00 4.08
539 540 6.099159 TCAGATCCAAATTCAAATTGTGCA 57.901 33.333 0.00 0.00 0.00 4.57
540 541 7.605410 AATCAGATCCAAATTCAAATTGTGC 57.395 32.000 0.00 0.00 0.00 4.57
565 566 6.295575 CCATATGTTTCCACAAGCCCTAAAAA 60.296 38.462 1.24 0.00 36.16 1.94
566 567 5.186797 CCATATGTTTCCACAAGCCCTAAAA 59.813 40.000 1.24 0.00 36.16 1.52
567 568 4.709397 CCATATGTTTCCACAAGCCCTAAA 59.291 41.667 1.24 0.00 36.16 1.85
568 569 4.264172 ACCATATGTTTCCACAAGCCCTAA 60.264 41.667 1.24 0.00 36.16 2.69
569 570 3.268334 ACCATATGTTTCCACAAGCCCTA 59.732 43.478 1.24 0.00 36.16 3.53
570 571 2.042979 ACCATATGTTTCCACAAGCCCT 59.957 45.455 1.24 0.00 36.16 5.19
571 572 2.456577 ACCATATGTTTCCACAAGCCC 58.543 47.619 1.24 0.00 36.16 5.19
572 573 4.947388 TCTTACCATATGTTTCCACAAGCC 59.053 41.667 1.24 0.00 36.16 4.35
573 574 6.072175 TGTTCTTACCATATGTTTCCACAAGC 60.072 38.462 1.24 0.00 36.16 4.01
574 575 7.447374 TGTTCTTACCATATGTTTCCACAAG 57.553 36.000 1.24 0.00 36.16 3.16
575 576 8.415950 AATGTTCTTACCATATGTTTCCACAA 57.584 30.769 1.24 0.00 36.16 3.33
576 577 7.667635 TGAATGTTCTTACCATATGTTTCCACA 59.332 33.333 1.24 0.00 37.31 4.17
577 578 8.050778 TGAATGTTCTTACCATATGTTTCCAC 57.949 34.615 1.24 0.00 0.00 4.02
578 579 8.685427 CATGAATGTTCTTACCATATGTTTCCA 58.315 33.333 1.24 0.00 0.00 3.53
579 580 8.902806 TCATGAATGTTCTTACCATATGTTTCC 58.097 33.333 1.24 0.00 0.00 3.13
653 654 9.823647 CCAACACTTATATACTCCCATGATATC 57.176 37.037 0.00 0.00 0.00 1.63
654 655 9.338968 ACCAACACTTATATACTCCCATGATAT 57.661 33.333 0.00 0.00 0.00 1.63
655 656 8.736097 ACCAACACTTATATACTCCCATGATA 57.264 34.615 0.00 0.00 0.00 2.15
656 657 7.633018 ACCAACACTTATATACTCCCATGAT 57.367 36.000 0.00 0.00 0.00 2.45
657 658 8.736097 ATACCAACACTTATATACTCCCATGA 57.264 34.615 0.00 0.00 0.00 3.07
658 659 8.593679 TGATACCAACACTTATATACTCCCATG 58.406 37.037 0.00 0.00 0.00 3.66
659 660 8.736097 TGATACCAACACTTATATACTCCCAT 57.264 34.615 0.00 0.00 0.00 4.00
660 661 8.593679 CATGATACCAACACTTATATACTCCCA 58.406 37.037 0.00 0.00 0.00 4.37
661 662 8.594550 ACATGATACCAACACTTATATACTCCC 58.405 37.037 0.00 0.00 0.00 4.30
662 663 9.424319 CACATGATACCAACACTTATATACTCC 57.576 37.037 0.00 0.00 0.00 3.85
671 672 9.113838 GAAGAATATCACATGATACCAACACTT 57.886 33.333 0.00 4.52 39.57 3.16
672 673 7.716998 GGAAGAATATCACATGATACCAACACT 59.283 37.037 0.00 0.00 39.57 3.55
673 674 7.716998 AGGAAGAATATCACATGATACCAACAC 59.283 37.037 0.00 0.00 39.57 3.32
674 675 7.805163 AGGAAGAATATCACATGATACCAACA 58.195 34.615 0.00 0.00 39.57 3.33
675 676 9.429359 CTAGGAAGAATATCACATGATACCAAC 57.571 37.037 0.00 0.00 39.57 3.77
676 677 9.379770 TCTAGGAAGAATATCACATGATACCAA 57.620 33.333 0.00 0.00 39.57 3.67
677 678 8.956446 TCTAGGAAGAATATCACATGATACCA 57.044 34.615 0.00 0.00 39.57 3.25
682 683 9.993454 CTCAAATCTAGGAAGAATATCACATGA 57.007 33.333 0.00 0.00 34.73 3.07
683 684 9.217278 CCTCAAATCTAGGAAGAATATCACATG 57.783 37.037 0.00 0.00 36.08 3.21
684 685 9.163894 TCCTCAAATCTAGGAAGAATATCACAT 57.836 33.333 0.00 0.00 40.23 3.21
685 686 8.553085 TCCTCAAATCTAGGAAGAATATCACA 57.447 34.615 0.00 0.00 40.23 3.58
686 687 8.646900 ACTCCTCAAATCTAGGAAGAATATCAC 58.353 37.037 0.00 0.00 42.56 3.06
687 688 8.789767 ACTCCTCAAATCTAGGAAGAATATCA 57.210 34.615 0.00 0.00 42.56 2.15
688 689 8.026607 CGACTCCTCAAATCTAGGAAGAATATC 58.973 40.741 0.00 0.00 42.56 1.63
689 690 7.039363 CCGACTCCTCAAATCTAGGAAGAATAT 60.039 40.741 0.00 0.00 42.56 1.28
690 691 6.265649 CCGACTCCTCAAATCTAGGAAGAATA 59.734 42.308 0.00 0.00 42.56 1.75
691 692 5.069781 CCGACTCCTCAAATCTAGGAAGAAT 59.930 44.000 0.00 0.00 42.56 2.40
692 693 4.402793 CCGACTCCTCAAATCTAGGAAGAA 59.597 45.833 0.00 0.00 42.56 2.52
693 694 3.954904 CCGACTCCTCAAATCTAGGAAGA 59.045 47.826 0.00 0.00 42.56 2.87
694 695 3.068873 CCCGACTCCTCAAATCTAGGAAG 59.931 52.174 0.00 0.00 42.56 3.46
695 696 3.031736 CCCGACTCCTCAAATCTAGGAA 58.968 50.000 0.00 0.00 42.56 3.36
696 697 2.243994 TCCCGACTCCTCAAATCTAGGA 59.756 50.000 0.00 0.00 40.92 2.94
697 698 2.667470 TCCCGACTCCTCAAATCTAGG 58.333 52.381 0.00 0.00 35.26 3.02
698 699 3.553922 GCATCCCGACTCCTCAAATCTAG 60.554 52.174 0.00 0.00 0.00 2.43
699 700 2.365617 GCATCCCGACTCCTCAAATCTA 59.634 50.000 0.00 0.00 0.00 1.98
700 701 1.139853 GCATCCCGACTCCTCAAATCT 59.860 52.381 0.00 0.00 0.00 2.40
701 702 1.587547 GCATCCCGACTCCTCAAATC 58.412 55.000 0.00 0.00 0.00 2.17
702 703 0.179073 CGCATCCCGACTCCTCAAAT 60.179 55.000 0.00 0.00 40.02 2.32
703 704 1.218047 CGCATCCCGACTCCTCAAA 59.782 57.895 0.00 0.00 40.02 2.69
704 705 1.680989 TCGCATCCCGACTCCTCAA 60.681 57.895 0.00 0.00 41.89 3.02
739 740 2.393271 ACTGCCTCTGTGTAAGATGC 57.607 50.000 0.00 0.00 44.39 3.91
751 752 8.499403 AGTTTATTCATCTCTTTTACTGCCTC 57.501 34.615 0.00 0.00 0.00 4.70
819 2119 9.771534 ACTAATTGGCTAGTTTATTCATCTCTC 57.228 33.333 0.00 0.00 0.00 3.20
974 2274 1.446272 GAGCAGGGTTCGTCGGAAG 60.446 63.158 0.00 0.00 31.49 3.46
1001 2301 1.957897 GTTTTAAACAGCACGTACGCG 59.042 47.619 16.72 3.53 44.93 6.01
1002 2302 2.300914 GGTTTTAAACAGCACGTACGC 58.699 47.619 16.72 0.00 0.00 4.42
1003 2303 2.349722 GGGGTTTTAAACAGCACGTACG 60.350 50.000 15.01 15.01 0.00 3.67
1004 2304 2.349722 CGGGGTTTTAAACAGCACGTAC 60.350 50.000 10.14 0.00 0.00 3.67
1005 2305 1.872313 CGGGGTTTTAAACAGCACGTA 59.128 47.619 10.14 0.00 0.00 3.57
1006 2306 0.664224 CGGGGTTTTAAACAGCACGT 59.336 50.000 10.14 0.00 0.00 4.49
1239 2556 2.515757 TGCTGTTGTTGCTGCCGA 60.516 55.556 0.00 0.00 33.25 5.54
1247 2564 0.678366 TTGGTGTCGGTGCTGTTGTT 60.678 50.000 0.00 0.00 0.00 2.83
1248 2565 1.078072 TTGGTGTCGGTGCTGTTGT 60.078 52.632 0.00 0.00 0.00 3.32
1249 2566 1.355210 GTTGGTGTCGGTGCTGTTG 59.645 57.895 0.00 0.00 0.00 3.33
1328 2645 3.512516 GTAGTAGGACGCGCCGGT 61.513 66.667 5.73 0.00 43.43 5.28
1429 2746 1.632948 GCAGAAACCGCGTTACTCCC 61.633 60.000 4.92 0.00 0.00 4.30
1454 2771 2.604614 GGAAACAGCGACATCAACCAAC 60.605 50.000 0.00 0.00 0.00 3.77
1455 2772 1.606668 GGAAACAGCGACATCAACCAA 59.393 47.619 0.00 0.00 0.00 3.67
1456 2773 1.202758 AGGAAACAGCGACATCAACCA 60.203 47.619 0.00 0.00 0.00 3.67
1457 2774 1.523758 AGGAAACAGCGACATCAACC 58.476 50.000 0.00 0.00 0.00 3.77
1479 2796 3.802852 AAGTTCAACCCCCGTGGCC 62.803 63.158 0.00 0.00 37.83 5.36
1489 2806 9.696917 AAATATTCATGTCAAGGAAAGTTCAAC 57.303 29.630 0.00 0.00 28.40 3.18
1491 2808 9.912634 GAAAATATTCATGTCAAGGAAAGTTCA 57.087 29.630 0.00 0.00 35.54 3.18
1495 2812 9.880157 AATGGAAAATATTCATGTCAAGGAAAG 57.120 29.630 0.00 0.00 37.29 2.62
1517 2834 4.260702 GCACAACAACACCAAAATGAATGG 60.261 41.667 0.00 0.00 43.84 3.16
1559 2879 8.562052 TCGAAATTAACCATCAATCATCTCATG 58.438 33.333 0.00 0.00 0.00 3.07
1614 2939 4.641989 GGCAATAGGTCTCATGTCACATTT 59.358 41.667 0.00 0.00 0.00 2.32
1621 2946 4.210331 GGAAATGGCAATAGGTCTCATGT 58.790 43.478 0.00 0.00 0.00 3.21
1662 3049 2.750141 ACGGAGGGAGTAGCTCAATA 57.250 50.000 0.00 0.00 31.08 1.90
1670 3057 7.983484 GTCAAATATTTAGAAACGGAGGGAGTA 59.017 37.037 0.00 0.00 0.00 2.59
1671 3058 6.822170 GTCAAATATTTAGAAACGGAGGGAGT 59.178 38.462 0.00 0.00 0.00 3.85
1672 3059 6.260271 GGTCAAATATTTAGAAACGGAGGGAG 59.740 42.308 0.00 0.00 0.00 4.30
1673 3060 6.069847 AGGTCAAATATTTAGAAACGGAGGGA 60.070 38.462 0.00 0.00 0.00 4.20
1674 3061 6.120220 AGGTCAAATATTTAGAAACGGAGGG 58.880 40.000 0.00 0.00 0.00 4.30
1675 3062 7.625828 AAGGTCAAATATTTAGAAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1690 3077 9.933723 CCATTTGAAATCTCTAAAAGGTCAAAT 57.066 29.630 0.00 0.00 39.41 2.32
1691 3078 9.142014 TCCATTTGAAATCTCTAAAAGGTCAAA 57.858 29.630 0.00 0.00 36.25 2.69
1692 3079 8.576442 GTCCATTTGAAATCTCTAAAAGGTCAA 58.424 33.333 0.00 0.00 0.00 3.18
1693 3080 7.944554 AGTCCATTTGAAATCTCTAAAAGGTCA 59.055 33.333 0.00 0.00 0.00 4.02
1694 3081 8.341892 AGTCCATTTGAAATCTCTAAAAGGTC 57.658 34.615 0.00 0.00 0.00 3.85
1695 3082 9.232473 GTAGTCCATTTGAAATCTCTAAAAGGT 57.768 33.333 0.00 0.00 0.00 3.50
1696 3083 8.678199 GGTAGTCCATTTGAAATCTCTAAAAGG 58.322 37.037 0.00 0.00 0.00 3.11
1697 3084 9.231297 TGGTAGTCCATTTGAAATCTCTAAAAG 57.769 33.333 0.00 0.00 39.03 2.27
1698 3085 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
1699 3086 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
1700 3087 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
1701 3088 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
1702 3089 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
1703 3090 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
1704 3091 7.503566 CCATATGTGGTAGTCCATTTGAAATCT 59.496 37.037 0.00 0.00 46.20 2.40
1705 3092 7.651808 CCATATGTGGTAGTCCATTTGAAATC 58.348 38.462 0.00 0.00 46.20 2.17
1706 3093 7.587037 CCATATGTGGTAGTCCATTTGAAAT 57.413 36.000 0.00 0.00 46.20 2.17
1750 3137 9.289782 AGAGCAAAATCAGTAAATCTACACTTT 57.710 29.630 0.00 0.00 0.00 2.66
1751 3138 8.725148 CAGAGCAAAATCAGTAAATCTACACTT 58.275 33.333 0.00 0.00 0.00 3.16
1752 3139 7.880195 ACAGAGCAAAATCAGTAAATCTACACT 59.120 33.333 0.00 0.00 0.00 3.55
1753 3140 7.959651 CACAGAGCAAAATCAGTAAATCTACAC 59.040 37.037 0.00 0.00 0.00 2.90
1754 3141 7.661437 ACACAGAGCAAAATCAGTAAATCTACA 59.339 33.333 0.00 0.00 0.00 2.74
1755 3142 7.959651 CACACAGAGCAAAATCAGTAAATCTAC 59.040 37.037 0.00 0.00 0.00 2.59
1756 3143 7.661437 ACACACAGAGCAAAATCAGTAAATCTA 59.339 33.333 0.00 0.00 0.00 1.98
1757 3144 6.488006 ACACACAGAGCAAAATCAGTAAATCT 59.512 34.615 0.00 0.00 0.00 2.40
1758 3145 6.672147 ACACACAGAGCAAAATCAGTAAATC 58.328 36.000 0.00 0.00 0.00 2.17
1759 3146 6.639632 ACACACAGAGCAAAATCAGTAAAT 57.360 33.333 0.00 0.00 0.00 1.40
1760 3147 6.765989 ACTACACACAGAGCAAAATCAGTAAA 59.234 34.615 0.00 0.00 0.00 2.01
1761 3148 6.288294 ACTACACACAGAGCAAAATCAGTAA 58.712 36.000 0.00 0.00 0.00 2.24
1762 3149 5.853936 ACTACACACAGAGCAAAATCAGTA 58.146 37.500 0.00 0.00 0.00 2.74
1763 3150 4.708177 ACTACACACAGAGCAAAATCAGT 58.292 39.130 0.00 0.00 0.00 3.41
1764 3151 4.751600 TGACTACACACAGAGCAAAATCAG 59.248 41.667 0.00 0.00 0.00 2.90
1765 3152 4.702831 TGACTACACACAGAGCAAAATCA 58.297 39.130 0.00 0.00 0.00 2.57
1766 3153 5.869753 ATGACTACACACAGAGCAAAATC 57.130 39.130 0.00 0.00 0.00 2.17
1767 3154 6.039717 ACAAATGACTACACACAGAGCAAAAT 59.960 34.615 0.00 0.00 0.00 1.82
1768 3155 5.356751 ACAAATGACTACACACAGAGCAAAA 59.643 36.000 0.00 0.00 0.00 2.44
1769 3156 4.881273 ACAAATGACTACACACAGAGCAAA 59.119 37.500 0.00 0.00 0.00 3.68
1770 3157 4.450976 ACAAATGACTACACACAGAGCAA 58.549 39.130 0.00 0.00 0.00 3.91
1771 3158 4.071961 ACAAATGACTACACACAGAGCA 57.928 40.909 0.00 0.00 0.00 4.26
1772 3159 6.539649 TTAACAAATGACTACACACAGAGC 57.460 37.500 0.00 0.00 0.00 4.09
1773 3160 9.599322 GATTTTAACAAATGACTACACACAGAG 57.401 33.333 0.00 0.00 32.35 3.35
1774 3161 9.337396 AGATTTTAACAAATGACTACACACAGA 57.663 29.630 0.00 0.00 32.35 3.41
1775 3162 9.599322 GAGATTTTAACAAATGACTACACACAG 57.401 33.333 0.00 0.00 32.35 3.66
1776 3163 9.337396 AGAGATTTTAACAAATGACTACACACA 57.663 29.630 0.00 0.00 32.35 3.72
1804 3191 8.909923 CCCTCCGTTCCTAAATATTTGTATTTT 58.090 33.333 11.05 0.00 32.49 1.82
1805 3192 8.276477 TCCCTCCGTTCCTAAATATTTGTATTT 58.724 33.333 11.05 0.00 34.41 1.40
1806 3193 7.808218 TCCCTCCGTTCCTAAATATTTGTATT 58.192 34.615 11.05 0.00 0.00 1.89
1807 3194 7.072076 ACTCCCTCCGTTCCTAAATATTTGTAT 59.928 37.037 11.05 0.00 0.00 2.29
1808 3195 6.384886 ACTCCCTCCGTTCCTAAATATTTGTA 59.615 38.462 11.05 0.00 0.00 2.41
1809 3196 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1810 3197 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1811 3198 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1812 3199 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
1813 3200 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1814 3201 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1815 3202 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1816 3203 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1817 3204 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
1818 3205 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
1819 3206 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
1820 3207 3.830121 TCTAATCTACTCCCTCCGTTCC 58.170 50.000 0.00 0.00 0.00 3.62
1821 3208 4.643784 TGTTCTAATCTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
1822 3209 4.607239 TGTTCTAATCTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
1823 3210 4.246712 TGTTCTAATCTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
1824 3211 5.793030 ATTGTTCTAATCTACTCCCTCCG 57.207 43.478 0.00 0.00 0.00 4.63
1825 3212 8.423906 TCATATTGTTCTAATCTACTCCCTCC 57.576 38.462 0.00 0.00 0.00 4.30
1827 3214 9.836179 AGATCATATTGTTCTAATCTACTCCCT 57.164 33.333 0.00 0.00 0.00 4.20
1834 3221 8.031864 CGGCAGTAGATCATATTGTTCTAATCT 58.968 37.037 0.00 0.00 32.38 2.40
1835 3222 7.201478 GCGGCAGTAGATCATATTGTTCTAATC 60.201 40.741 0.00 0.00 32.38 1.75
1836 3223 6.591834 GCGGCAGTAGATCATATTGTTCTAAT 59.408 38.462 0.00 0.00 32.38 1.73
1837 3224 5.926542 GCGGCAGTAGATCATATTGTTCTAA 59.073 40.000 0.00 0.00 32.38 2.10
1856 3244 1.038681 TCTTCGTAGGTATGGCGGCA 61.039 55.000 16.34 16.34 0.00 5.69
1857 3245 0.318784 CTCTTCGTAGGTATGGCGGC 60.319 60.000 0.00 0.00 0.00 6.53
1866 3254 3.004944 GGACCAGAATAGCTCTTCGTAGG 59.995 52.174 14.81 14.81 29.07 3.18
1879 3267 1.541310 TTCCGTGCGAGGACCAGAAT 61.541 55.000 0.00 0.00 40.56 2.40
1880 3268 1.750341 TTTCCGTGCGAGGACCAGAA 61.750 55.000 0.00 0.00 40.56 3.02
1881 3269 2.204461 TTTCCGTGCGAGGACCAGA 61.204 57.895 0.00 0.00 40.56 3.86
1884 3273 3.110178 CGTTTCCGTGCGAGGACC 61.110 66.667 0.00 0.00 40.56 4.46
1891 3280 2.357034 TCTGCCTCGTTTCCGTGC 60.357 61.111 0.00 0.00 34.87 5.34
1892 3281 2.383527 GCTCTGCCTCGTTTCCGTG 61.384 63.158 0.00 0.00 35.01 4.94
1987 3377 0.109153 TCAGTTCTGCATGCACAGGT 59.891 50.000 18.46 0.00 38.26 4.00
1997 3387 2.935201 GGTCATCACTCATCAGTTCTGC 59.065 50.000 0.00 0.00 0.00 4.26
2010 3400 3.865745 CCATCGTTTCTAGTGGTCATCAC 59.134 47.826 0.00 0.00 46.39 3.06
2040 3430 1.839994 GACCTCACATCCTCCATCCAA 59.160 52.381 0.00 0.00 0.00 3.53
2061 3454 4.859784 GCAAATGCACACCGGTAC 57.140 55.556 6.87 0.00 41.59 3.34
2089 3482 2.224257 ACCGCCAATGCAAAAACTCATT 60.224 40.909 0.00 0.00 37.32 2.57
2092 3485 1.139163 CACCGCCAATGCAAAAACTC 58.861 50.000 0.00 0.00 37.32 3.01
2093 3486 0.249826 CCACCGCCAATGCAAAAACT 60.250 50.000 0.00 0.00 37.32 2.66
2094 3487 1.840630 GCCACCGCCAATGCAAAAAC 61.841 55.000 0.00 0.00 37.32 2.43
2095 3488 1.596477 GCCACCGCCAATGCAAAAA 60.596 52.632 0.00 0.00 37.32 1.94
2146 3548 3.131223 GCTACCATGTAGAGAACTGCTGA 59.869 47.826 5.48 0.00 0.00 4.26
2184 3712 6.039270 CCATGTTAAGTCTCTTTGGTCAAACA 59.961 38.462 0.00 0.00 0.00 2.83
2246 3818 2.094182 CCGCCAGCTTACTACAGAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
2247 3819 1.476891 CCGCCAGCTTACTACAGAAGA 59.523 52.381 0.00 0.00 0.00 2.87
2248 3820 1.204941 ACCGCCAGCTTACTACAGAAG 59.795 52.381 0.00 0.00 0.00 2.85
2266 3838 4.016444 TGATTCCCAGTATCTTGCAAACC 58.984 43.478 0.00 0.00 0.00 3.27
2312 3884 5.277857 ACATACTCCATACTAGTGCCAAC 57.722 43.478 5.39 0.00 0.00 3.77
2326 3898 7.229306 TCTGCATGATTGGATTAAACATACTCC 59.771 37.037 0.00 0.00 31.42 3.85
2327 3899 8.072567 GTCTGCATGATTGGATTAAACATACTC 58.927 37.037 0.00 0.00 31.42 2.59
2329 3901 6.852853 CGTCTGCATGATTGGATTAAACATAC 59.147 38.462 0.00 0.00 31.42 2.39
2385 3957 8.461222 CACAGCAGAATATCCTGAAATAAAACA 58.539 33.333 0.00 0.00 36.29 2.83
2409 3981 1.287425 GATTGCACCTAGGCGTACAC 58.713 55.000 9.30 0.00 36.28 2.90
2415 3987 1.458639 GCCCATGATTGCACCTAGGC 61.459 60.000 9.30 0.00 0.00 3.93
2437 4009 7.672660 TCAAATAGTTTCCCTACAGAGTACAGA 59.327 37.037 0.00 0.00 0.00 3.41
2438 4010 7.837863 TCAAATAGTTTCCCTACAGAGTACAG 58.162 38.462 0.00 0.00 0.00 2.74
2439 4011 7.786046 TCAAATAGTTTCCCTACAGAGTACA 57.214 36.000 0.00 0.00 0.00 2.90
2470 4042 9.818270 ATATTTGATGGGAACTGATGTCATAAT 57.182 29.630 0.00 0.00 0.00 1.28
2471 4043 9.645128 AATATTTGATGGGAACTGATGTCATAA 57.355 29.630 0.00 0.00 0.00 1.90
2473 4045 9.818270 ATAATATTTGATGGGAACTGATGTCAT 57.182 29.630 0.00 0.00 0.00 3.06
2500 4072 5.800438 CAGAGAACAAATGCAAGATGTGATG 59.200 40.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.