>input_sequence_75479
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-----------------------------------------------------------ACGCGTACG------TGCTGT
TTAAAACCCCGGTCACAACACAAACTCCCCGGCCATCAGCATTCAGCCGTCTCCCAAACCCAAAGCATCCTCGC------
-----AACGCGCTGCGACCAGGACAGCCATGGCACGCCGTGCTCTGCCTCTGCTCCTCCTGCTCCTGGCCGTCGCCGCCG
TCGCGGCAGCACCCATCGTCCACGCGAGCGCCGAGGACGGCGAGGTCGGCACGAGGAGGCGGTTGCTGCAGGACGTCGGC
AGCAACAACAGCACCGACACCAACGGCACGGCGGGGTACATCAGCTACGGCGCGCTGTACGCCAGCACGGTGCCGTGCCC
CTACACCGGCGCGTCCTACTACAACTGCCGCCCCGGCGCGGAGGCCAACCCCTACGAGCGCGGCTGCTCCGCCATCACGC
AGTGCCGCGACTGATGAACCGACGAGGGAGTAACGCGGTTTCTGCTGCTCGTTGGTTGATGTCGCTGTTTCCTTGGGCCA
CGGGGGTTGAACTTTCCTTGACATGAATATTTTCCATTCATTTTGGTGTTGTTGTGCTTCGATGTACTATAC---GTGCA
TGAGATGATT-GATG-----------------------------------------------------------------
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>chr2D_1_TraesCS2D01G115000
GGGCTCGCTACCGAAGTCAGACATGGTGGCGCTTGGAAGGTACGGACACAAACCGAAGCGAAACATGAAGGAAGTGAAGC
CGGCAAGAGTGATAGGGTTTGATCCGATTGGGAATGAGGTGGGGTTTATGTGGCGTCGAGGTGGGCCAACATGGGACGGT
CCCACGTGACGGCTGCGTCTGGGCGTATTCAGATCACCTCATATCCATCTAACATGAGTTGGATTCAAGGGATGCAGGAC
AGCCCAGACATTTGGGTTAGATTTGAGGGGAGAATATCACATGATACCAACACTTATATGCTCCCATGATACCAATTTGA
AAAATTCAAATTTAAACGTGTCAAAAAATTCCAAAAAAAATCATAGATGTTCTCAACATATGTGTCTACAAGCCCTAAAA
AAATCAGATCCAAATTCGATATACACATTGACAAACAAAAAAAGAAAAATCTGTTGTGAATAGTGTAGTATTTTTACACT
ATTCATGTTTTGTCTTTATTGACACTATTCATGCTGAATTTGTCTTTTTTGTTTCTCATTGCACAATTTGAATTTGGATC
TGATTTTTTTAGGGCTTGTGGAAACATATGGTAAGAACATTCATGATTTTTTTCGGAATTTTTTGAAACGATTAAATTTG
AATTTTTCAAATTGATATCATGGGAGTATATAAGTGTTGGTATCATGTGATATTCTTCCTAGATTTGAGGAGTCGGGATG
CGATTTTTCGATTGGGGCAGCATCTTACACAGAGGCAGTAAA--------------------------------------
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---------------------------------------------------AGAGATGAATAAACTATCCAAGCCAGTA-
--TCTTGATTCGTGTTCCGGCA-------AGGCAGTAAGAGAGATGAATAAACTAGCCAATTAGTATCTTGATTCGTGTT
CCGGCTGGCACCTGCAGGCCGGGCAAAGTCTCCTCCAGCTGCGGAAATGGTAGTGGATCCCCAGTCCTAACGCGAGCCCC
AAAGTCAACCGGCGGAGTGGCCACCCACCCGTCCTTCCGACGAACCCTGCTCCTCCTACACGCGTACG------TGCTGT
TTAAAACCCCGGTCACAACACAAACTCCCCGGCCATCAGCATTCAGCCGTCTCCCAAACCCAAAGCATCCTCGC------
-----AACGCGCTGCGACCAGGACAGCCATGGCACGCCGTGCTCTGCCTCTGCTCCTCCTGCTCCTGGCCGTCGCCGCCG
TCGCGGCAGCACCCATCGTCCACGCGAGCGCCGAGGACGGCGAGGTCGGCACGAGGAGGCGGTTGCTGCAGGACGTCGGC
AGCAACAACAGCACCGACACCAACGGCACGGCGGGGTACATCAGCTACGGCGCGCTGTACGCCAGCACGGTGCCGTGCCC
CTACACCGGCGCGTCCTACTACAACTGCCGCCCCGGCGCGGAGGCCAACCCCTACGAGCGCGGCTGCTCCGCCATCACGC
AGTGCCGCGACTGATGAACCGACGAGGGAGTAACGCGGTTTCTGCTGCTCGTTGGTTGATGTCGCTGTTTCCTTGGGCCA
CGGGGGTTGAACTTTCCTTGACATGAATATTTTCCATTCATTTTGGTGTTGTTGTGCTTCGATGTACTATAC---GTGCA
TGAGATGATT-GATGGTTAATTTCGAGCATTTAACAGAGCGGCTGA----GCAGTATCAAATGTGACATGAGACC--TAT
TGCCATTTCCCCCCGTTTTA------------------------------------------------------------
ACACTATCTATTGAGCTACTCCCTCCGTTTCTAAATATTTGACCTTTTAGAGATTTCAAATGGACTACCACATATGGCTG
TATATAGACATATTTTAAAGTGTAGATTTACTGATTTTGCTCTGTGTGTAGTCATTTGTTAAAATCTCTAAAAATACAAA
TATTTAGGAACGGAGGGAGTAGATTAGAACAATATGATC-TACTGCCGCCATACCTACGAAGAGCTATT-CTGGTCCTCG
CACGGAAACGAGGCAGAGCCTGCTAGCATTTTTTCCAATCTCCGTTCACCAAAACAGTCCTCTGTTTCACAG-TTCAGCA
CGGCCAGAACTAATATACCTGTGCATGCAGAACTGATGAGTGATGACCACTAGAAACGATGGTAAAAAAT---TGGATGG
AGGATGTGAGGTCGTACCGGTGTGCATTTGCAAGCATTTTTAATGAGTT-------TTTGCATTGGCGGTGGCGCCACGC
CATTGTTG--GTGTTGCAGGTTCCAAATCAGCAGTTCTC-----------------------------------------
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-----TACATGGTAGCCACTAATAAGGCAAGTGTTT--------------------------------------------
GACCAAAGAGACTTAACATGGCAACCACTAAATCTAGCAAAATGAAGGAACGCGCAATTCTTCTGTAGTAAGCTGGCGGT
TTGCAAGATACTGGGAATCAGTGTTCGGTAGCTGGAGACGTGTGTTGGCACTAGTATGGAGTATGTTTAATCCAATCATG
CAGACGACTTATCCTCTCAAATGTTCTTCAGGTAGCTGTTTTATTTCAGGATATTCTGCTGTGTACGCCTAGGTGCAATC
ATGGGCAGTCTGTACTCTGTAGGGAAACTATTTGATATTTAATTATGACATCAGTTCCCATCAAATATTATCATCACATC
TTGCATTTGTTCTCTGAGCTCATTGTGGGGTGTGCTGGACCCTCTCCGAATTTCTGCAAGCTTCGT
>chr2A_87
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------GAGTGATAAGGTTTGATCCGATTGAGAATGAGGTGGGGTTTATGTGGCGTCGAGGTGGGCCAACATGGGATGGT
CCCACATGACGGCTGCGTCTGGGCGTATTCAGATCACCTCATATTCATCCCACATGAGTTGGATTCAAGGGATGCAGGAC
AGCCCAGACATTTGGGTTAGGTC---------------------------------------------------------
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-----------------------------------------------------------------TGAGGAGTCGGGATG
CGATTTTTCGATTGGGGCAACATCTTAGAGCAACTCTAGCAGACCCTGCATCCCGCCCCGACCCGCAAAATAACCGCCAA
AATGCGCGTCGGGGCGGAAAAACCTGCCCGGTCAGACCCCGCATCTCGCTCCGCCCCGCAAAAATTTTTGGGGGCGCGGC
AAAATCCCGACCCTAACCCGGGAATACGTCCCTCCCCTCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTTTCCCCACCAACCACCTTTCCTCCCCCCTCGCGCC
GCCGTCGGGCCGCCGCCCAAGATTCCAGCGAAAGCCGCCGGCAGGAGCACGCCGAAAGGCCTCCACGCGCACGAGACCTT
CCCTCCCTCCCCCCATGCGTTGGCGGGCCGCCAGATTTGCGGATCTGCGGCACTTCATCGCGGGCCGCCGAATTTGGCTT
TTCTGGCCTCCTGTTGCTGCGTCAAGCGATGGAGTGGTCGGGGAGCCTCTCCCGCAGCCCCGGCAAGGGCGCATCGCCGC
ATGCAGGTTCGGGTTCGTCCGCCCGCCGCCGCGAACGGTTTGCAAGCATGGATTCGTCCGGCCGTCCACCGGGCTCGGCG
CTCGCGCAACGTCTCTGTAGCTTGCCGGTGTCGCTCATATAGTGTGATGACTGCACGCGGACAGTGCTGCGGCTAACTTC
GGGCACGCTGAAGCACCCCGGATGGGTGTTCTTCAAATGCGAAAACGACGGGGTACGTGAATTTGCGGTAGCTCATTTGA
TAGCTTATTCTTTAGTTCAATTGCGGATCCTCATTTTGAACATGGTCATTCTTTTGTGTAGGGCGGTGGGTGCTCATTTT
GGTTTTGGGAAGGCCAATACATTGATTTATTAATAGAAAGAAACTTAATAGATGGTAGTGCACTCCTTAGTAGAATCGAA
GGCAATGATACGTCTGCATGACACCACTTATATGTTACTACCCACTATGAAAGTAGTAATATAGACTAGTAACATCGGCA
AGTTACTACCTTATGTTACTCTTCATTGTGAGATGAATAAACTAGCCAATTAGAGATGAATAAACTATCCAAGCCAGTA-
--TCTTGATTCGTGTTCCGGCG-------AGGCAGTAAAAGAGATGAATAAACTAGCCAATTAGTATCTTGATTTGTGTT
CCGGCTGGCACCTGCAGGCCGGGCAAAGTCTCCTCCAGCTGCGGAAATGGTAGTGGATCCCCAGTCCTAACGCGAGCCCC
AAAGTCAACCGGCGGAGTGGCCACCCACCCGTCATTCCGACGAACCCTGCCCCTCCTACC------CG------TGCTGT
TTAAAGCCCCGGTCACAACACAAACTCCCCGGCCATCAGCATTCAGCCGTCTCCCAAACCCAGAGCATCCTCGCT---CA
CCGGCAACGCGCTGCGACCAGGGCAGCCATGGCACCCCGTGCTCTGCCTCTGCTCCTCCTCGTCCTGGCCGTCGCCGCCG
TGTCGGCAGCACCCATCGTCCGCGCGAGCGCCGAGGACGGCGAGGTCGGCACGAGGAGGCGGCTGCTGCAGGTCGCCGGC
AGC---AACAGCACCGACACCAACGGCACGGCGGGGTACATCAGCTACGGCGCGCTGTTCGCCGACACGGTGCCGTGCCC
CTACTCCGGCGCGTCCTACTACAACTGCCGCCCCAGCGCGGAGGCCAACCCCTACGAGCGCGGCTGCTCCGCCATCACGC
AGTGCCGCGACTGATGACACGCGAACGACCCAC----GTTCCTGCTGCTC----GTTGCTGTCGCTGTTTCCTTGAGCCA
CGGGGTTGAGTTTTTCCTTGACATGAATATTTT-CATTCATTTTGGTGTTGTTGTGCTTCGATGTACTATATGTGGTGTA
TGAGATGATTTGATGGTTAATTTCGAGCATTTAACAGAGCGGCCGA----GCAGTATC-AATGTGGCATGAGACC--TAT
TGCCATTTCCCCCCGTTTTATCC-GCGGTTACATGTTCCCACGCTATGCTTTCAACGGAGTTACAGTCGCACGTAACGCG
GCACTGTCCATTGAGC----------------------------------------------------------------
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------------------------TAGAACAATATGATGTTACAACCGCCATAGCTATAAGAGGAGCACAT---------
--CGGAAACGAGGCAGAGC-TGCTAGCATT--TTCCAGTCTCCATTCACCAAAACAGTCCTCCGTTTCACAGTTTCAGCA
TGGCCAGAAGTAATATGCCTGTGCATACAGAAC-------TGATGACCACGATAAACGATGGTAAAAAAGAAATGGACGG
AGGCTGGGTGGTCATACCGGTGAGCATTTGCAAGCATTTTTTATAGAGTTTTTGCATTTGCAGTGACGCTGACGCCACTC
CATTGTTGGTGTGTTGCAGGTTCCAAAACAGCAGTTTCTCTACTCCCTTCGTTCTAAATTACTTGACCCATATTTATCTA
GACACGGATGCATCTAGACACTAAATAAATATAGATGCATTCATATTTAGACAAATTCAAGTCAACTAATTTGGAATGGA
GGGAGTACATGGCAGCCACTAATAAGGCAAGCGTTT--------------------------------------------
GACCAAAGAGGCTTAACATGGCAACCACTAAATCTAGCAAAATGAAGGAACGCGCAA---TTCTGTAGTAAGCTGGCAAT
TTGCAAGATACCGGGAATCAGTGTTCGGTAGCTGGAGACGTGTATTGGCACCAGTATA---TATGTTTAATCCAATCATG
CAGACGACTTATCCTCTCAAATGTTGTTCAGGTAGCCGTTTTATTTCAGGATATTCTGCTATGTACTCATAGGTGCAATC
ATGGGTAG-------TCTGTAGGGTAACTATTTGATATTTA----TGACATCAGTCCCCATCAAATATTATTATCACA--
TTGCATTTGTTCTCTGAGCTCATTGTGGGGTGTTCTGGACCCTCT---------------------
>chr2B_743
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----------------------TCTTACACATAGGCAGTAAA--------------------------------------
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---------------------------------------------------AGAGATGAATAAACTATCCAAGCCAGTAG
TATCTTGATTGGTGCTCCGGCATACACATAGGCAGTAAAAGAGATGAATAAACTAGCCAATTAGTATCTTGATTTGTGTT
CCGGCTGGCACCTGCAGACCGGGCAAAGTCTCCTCCAGCTGCGGAAATGGTAGTGGATCCCCAGTCCTAACGCGAGCCCC
AAAGTCAACCGGCGGAGTGGCCACCCACCCGTCATTCCGACGAACCCTGCTCCTCCTACC------CGCGTACGTGCTGT
TTAAAACCTCGCTCACAACACAAACTCCCCGGCCATCAGCATTCAGCCGTCTCCCAAACCCAAAGCATCCTCGCCCACCA
CCGGCAACGCGC-GCGACCAGGACAGCCATGGCATCCCGTGCTCTGCCTCTGCTCCTCCTCGTCCTGGCCGTCGCCGCCG
TCGCGGCAGCGCCCATCGTCCGCGCGAGCGCCGAGGACGGCC---------CGAGGAGGCGGCTGCTGCAGGACGCCGGC
GGC---AACAGCACCGACACCAACGGCACGGCGGGGTACATCAGCTACGGCGCGCTGTACGCCAGCACGGTGCCGTGCGC
CTACTCCGGCGCGTCCTACTACAACTGCCGCCCCGGCGCGGAGGCCAACCCCTACGAGCGCGGCTGCTCCGCCATCACGC
AGTGCCGCGACTGATGGACCGACGACGGAGTAACGCGGTTTCTGCTGCTA----GTTGATGTCGCTGTTTCCTTGAGCCA
CGGGATC-GAATTTTCCTTGACATGAATATTTT-CATTCATTTTGGTGTTGTTGTGCTTCGATGTACTATAC---GTGTA
TGAGATGATT-GATGGTTAATTTCGAGCATTTAACAGAGCGGCTGAGCATGCAGTATC-AATGTGGCATGAGACATATAT
TGCCATTTCCCCCCGTTCTATCCCGCGGTTCCATGTTT-CATGCTATGCTTTCTACGGAGTTACAGTCGCACGTGACGCC
ACACTATCCGTTGAGC----------------------------------------------------------------
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------------------------TGGAACAATATGATC-TACATCTGCCATAGCTACGAAGAGCTTCAGCTTGTTCTCA
AACGTAAACGAGGCAGAGC-TGCTAGCATTTTTTCCAATCTCCGTTCACCAAAACAGTCCTCTGTTCCACAGTTTCAGCG
CGGCCAGAACTGATATGCCTGTGCATACAGAAC-------TGATGGCCACTGGAAACGATGGTAAAAA-GAAATGGATGG
AGGCTGCGGGGTCATACCGCTGAGCATCTGCAAGCATTTTACT--GAGTTTTTGCATTTGCAGTGACGCTGACGCCACGC
CATTGTCG--GTGTTGCAGGTTCCAAAACAGCAGTTCTC-----------------------------------------
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-----TACATGGCAGCCACTAATAAGGCAAGCGTTTTTTTTTGTTTTTTTTTTTTTTGCGGGCGAATAAGGTAAGCGTTT
GACCAAAGAGACTTAACATGGCAACCACTAAATCTAGCAAAATGGAGGAACACGCAA---TCCTGTAGTAAGCTGGCAGT
TTGCAAGATACTGGGAATCGGTGTTCGGTAGCTGGAGACGTGTATTGGCACTCGCATATATGT-----------------
--------TTATCCTCTCAAATGTTCTCCAGGTAGCCGTTTTATTTCAGGATATACTGCTATGTGCTCCTAGGTGCAATC
ATGGGCAGG-------CTGTAGGGAAACTATTTGATATTTA----TGACATCAGCCATTATTTT--------ATCACATC
TTGCATTTGTTCTCTGAGCTCATTGTGGGGTGTTCCGGACCCTCTCCAGAA---------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S---------------S---------------------------------------------S---
-----S--------------------------------------S----SS-----------------------------
--------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-------------------S-----------S------------------------------------------------
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--------------------------------------S-----------------------------------S-----
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---------------------------------S-------------------------SSSSSSS--------------
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-----------------------------------S------------------------SS------------------
---------------------S----------------------------------------S------------S----
---SSS--------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------S------------------------SSSS---------------------S----
-----S-S---S---------------------S--------------------------------------------S-
----------------------------------------------------------S------S--------------
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--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------------SS--------S------------SSS---S--S---S
S------------------S------------------------------------------------------------
----------------S---------S------SSSSSSS-----------------------------S----------
---S--S-S----S--------S------------------S--SSSS--------------S--S--S--S--------
---------------------------S----------------------------------------------------
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------------S------------------S------------------------------------------------
---------------------------------------------------------SSS-----------------S--
-------------------------------------------S-------------SS-S-------------------
------------------------------------S-----------------------S-----S-------------
--------SSSSSSS--------------------------SSSS----------S---------------S--------
---------------------------------S-------------SS-SSSSSSSSSSSSSSSS
>forward_50
------------------------------GCTTGGAAGGTACGGACACA------------------------------
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>reverse_3377
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----------------ACCTGTGCATGCAGAACTGA--------------------------------------------
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