Multiple sequence alignment - TraesCS2D01G110000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G110000 chr2D 100.000 2712 0 0 1 2712 61020556 61023267 0.000000e+00 5009.0
1 TraesCS2D01G110000 chr2D 91.860 86 7 0 2286 2371 61022557 61022642 1.320000e-23 121.0
2 TraesCS2D01G110000 chr2D 91.860 86 7 0 2002 2087 61022841 61022926 1.320000e-23 121.0
3 TraesCS2D01G110000 chr2D 96.923 65 2 0 2086 2150 61022309 61022373 2.850000e-20 110.0
4 TraesCS2D01G110000 chr2D 96.923 65 2 0 1754 1818 61022641 61022705 2.850000e-20 110.0
5 TraesCS2D01G110000 chr2D 81.579 114 17 1 68 181 419802641 419802532 1.030000e-14 91.6
6 TraesCS2D01G110000 chr2B 87.912 1638 85 34 225 1786 95795426 95797026 0.000000e+00 1823.0
7 TraesCS2D01G110000 chr2B 92.067 479 31 5 2193 2667 95797118 95797593 0.000000e+00 667.0
8 TraesCS2D01G110000 chr2B 81.250 288 20 4 292 549 95794528 95794811 4.580000e-48 202.0
9 TraesCS2D01G110000 chr2B 93.182 88 4 1 2002 2087 95797212 95797299 7.880000e-26 128.0
10 TraesCS2D01G110000 chr2A 83.124 1594 136 76 274 1781 61487329 61488875 0.000000e+00 1330.0
11 TraesCS2D01G110000 chr2A 89.837 492 42 5 2222 2712 61488991 61489475 2.290000e-175 625.0
12 TraesCS2D01G110000 chr5D 88.038 209 23 2 1319 1526 412960757 412960964 2.090000e-61 246.0
13 TraesCS2D01G110000 chr5A 88.038 209 23 2 1319 1526 525026091 525026298 2.090000e-61 246.0
14 TraesCS2D01G110000 chr5B 87.500 208 24 2 1319 1525 497504662 497504868 3.490000e-59 239.0
15 TraesCS2D01G110000 chr4B 88.439 173 20 0 1355 1527 585822540 585822368 2.740000e-50 209.0
16 TraesCS2D01G110000 chr4B 86.932 176 22 1 1355 1530 585963968 585963794 2.130000e-46 196.0
17 TraesCS2D01G110000 chr4B 85.393 178 25 1 2478 2654 362149612 362149435 1.660000e-42 183.0
18 TraesCS2D01G110000 chr4B 85.714 56 7 1 126 181 191659176 191659122 1.050000e-04 58.4
19 TraesCS2D01G110000 chr4A 87.861 173 21 0 1352 1524 3351564 3351736 1.270000e-48 204.0
20 TraesCS2D01G110000 chr4A 85.083 181 25 2 2475 2654 215223892 215224071 1.660000e-42 183.0
21 TraesCS2D01G110000 chr4D 87.283 173 22 0 1355 1527 467636291 467636119 5.920000e-47 198.0
22 TraesCS2D01G110000 chr4D 86.517 178 23 1 2478 2654 294352115 294351938 7.660000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G110000 chr2D 61020556 61023267 2711 False 1094.2 5009 95.51320 1 2712 5 chr2D.!!$F1 2711
1 TraesCS2D01G110000 chr2B 95794528 95797593 3065 False 705.0 1823 88.60275 225 2667 4 chr2B.!!$F1 2442
2 TraesCS2D01G110000 chr2A 61487329 61489475 2146 False 977.5 1330 86.48050 274 2712 2 chr2A.!!$F1 2438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.17691 TGCGTGGAGGCGATATTTGA 59.823 50.0 0.0 0.0 35.06 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 2657 0.310854 GCTGGTGGTGTTTGTGCTAC 59.689 55.0 0.0 0.0 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.757188 ATGCGGACTGTAGAGGGAGG 60.757 60.000 0.00 0.00 0.00 4.30
20 21 2.128507 GCGGACTGTAGAGGGAGGG 61.129 68.421 0.00 0.00 0.00 4.30
21 22 2.128507 CGGACTGTAGAGGGAGGGC 61.129 68.421 0.00 0.00 0.00 5.19
22 23 2.128507 GGACTGTAGAGGGAGGGCG 61.129 68.421 0.00 0.00 0.00 6.13
23 24 2.042843 ACTGTAGAGGGAGGGCGG 60.043 66.667 0.00 0.00 0.00 6.13
28 29 1.229400 TAGAGGGAGGGCGGTTTGT 60.229 57.895 0.00 0.00 0.00 2.83
29 30 1.550130 TAGAGGGAGGGCGGTTTGTG 61.550 60.000 0.00 0.00 0.00 3.33
30 31 3.920093 GAGGGAGGGCGGTTTGTGG 62.920 68.421 0.00 0.00 0.00 4.17
38 39 2.113139 CGGTTTGTGGGCCTCACT 59.887 61.111 20.61 0.00 46.20 3.41
40 41 1.903404 GGTTTGTGGGCCTCACTGG 60.903 63.158 20.61 0.00 46.20 4.00
41 42 1.150536 GTTTGTGGGCCTCACTGGA 59.849 57.895 20.61 8.13 46.20 3.86
43 44 0.467290 TTTGTGGGCCTCACTGGAAC 60.467 55.000 20.61 0.00 46.20 3.62
44 45 2.358737 GTGGGCCTCACTGGAACG 60.359 66.667 14.93 0.00 42.86 3.95
45 46 4.329545 TGGGCCTCACTGGAACGC 62.330 66.667 4.53 0.00 38.35 4.84
46 47 4.329545 GGGCCTCACTGGAACGCA 62.330 66.667 0.84 0.00 38.35 5.24
47 48 2.045926 GGCCTCACTGGAACGCAT 60.046 61.111 0.00 0.00 38.35 4.73
49 50 2.401766 GCCTCACTGGAACGCATGG 61.402 63.158 0.00 0.00 38.35 3.66
50 51 2.401766 CCTCACTGGAACGCATGGC 61.402 63.158 0.00 0.00 38.35 4.40
51 52 1.672030 CTCACTGGAACGCATGGCA 60.672 57.895 0.00 0.00 0.00 4.92
52 53 1.002257 TCACTGGAACGCATGGCAT 60.002 52.632 0.00 0.00 0.00 4.40
53 54 1.138036 CACTGGAACGCATGGCATG 59.862 57.895 22.99 22.99 0.00 4.06
62 63 3.896133 CATGGCATGCGTGGAGGC 61.896 66.667 15.53 0.00 0.00 4.70
66 67 2.280119 GCATGCGTGGAGGCGATA 60.280 61.111 8.27 0.00 35.06 2.92
67 68 1.669115 GCATGCGTGGAGGCGATAT 60.669 57.895 8.27 0.00 35.06 1.63
68 69 1.230635 GCATGCGTGGAGGCGATATT 61.231 55.000 8.27 0.00 35.06 1.28
69 70 1.229428 CATGCGTGGAGGCGATATTT 58.771 50.000 0.00 0.00 35.06 1.40
70 71 1.069703 CATGCGTGGAGGCGATATTTG 60.070 52.381 0.00 0.00 35.06 2.32
71 72 0.176910 TGCGTGGAGGCGATATTTGA 59.823 50.000 0.00 0.00 35.06 2.69
72 73 0.582005 GCGTGGAGGCGATATTTGAC 59.418 55.000 0.00 0.00 0.00 3.18
74 75 1.472552 CGTGGAGGCGATATTTGACCA 60.473 52.381 0.00 0.00 0.00 4.02
76 77 2.614057 GTGGAGGCGATATTTGACCAAG 59.386 50.000 0.00 0.00 0.00 3.61
77 78 2.238646 TGGAGGCGATATTTGACCAAGT 59.761 45.455 0.00 0.00 0.00 3.16
78 79 3.279434 GGAGGCGATATTTGACCAAGTT 58.721 45.455 0.00 0.00 0.00 2.66
79 80 3.312697 GGAGGCGATATTTGACCAAGTTC 59.687 47.826 0.00 0.00 0.00 3.01
81 82 4.526970 AGGCGATATTTGACCAAGTTCAT 58.473 39.130 0.00 0.00 0.00 2.57
82 83 5.680619 AGGCGATATTTGACCAAGTTCATA 58.319 37.500 0.00 0.00 0.00 2.15
84 85 5.295787 GGCGATATTTGACCAAGTTCATACA 59.704 40.000 0.00 0.00 0.00 2.29
85 86 6.183360 GGCGATATTTGACCAAGTTCATACAA 60.183 38.462 0.00 0.00 0.00 2.41
86 87 7.247728 GCGATATTTGACCAAGTTCATACAAA 58.752 34.615 0.00 0.00 0.00 2.83
87 88 7.753132 GCGATATTTGACCAAGTTCATACAAAA 59.247 33.333 0.00 0.00 32.51 2.44
88 89 9.619316 CGATATTTGACCAAGTTCATACAAAAA 57.381 29.630 0.00 0.00 32.51 1.94
130 131 9.797642 AATGCAACATTACTATCATTAGATCCA 57.202 29.630 0.00 0.00 35.67 3.41
131 132 9.970553 ATGCAACATTACTATCATTAGATCCAT 57.029 29.630 0.00 0.00 35.67 3.41
132 133 9.797642 TGCAACATTACTATCATTAGATCCATT 57.202 29.630 0.00 0.00 35.67 3.16
206 207 8.862325 GGATATTTTCCAAAACAATTTTCCCT 57.138 30.769 0.00 0.00 44.74 4.20
207 208 9.952030 GGATATTTTCCAAAACAATTTTCCCTA 57.048 29.630 0.00 0.00 44.74 3.53
246 921 4.062991 GACATCAAACCTTTCTACCACGT 58.937 43.478 0.00 0.00 0.00 4.49
247 922 5.217978 ACATCAAACCTTTCTACCACGTA 57.782 39.130 0.00 0.00 0.00 3.57
251 926 4.586001 TCAAACCTTTCTACCACGTAGAGT 59.414 41.667 2.07 0.00 44.46 3.24
256 931 6.685657 ACCTTTCTACCACGTAGAGTAAAAG 58.314 40.000 2.07 4.57 44.46 2.27
260 935 6.899393 TCTACCACGTAGAGTAAAAGGAAA 57.101 37.500 0.00 0.00 39.81 3.13
264 939 6.221659 ACCACGTAGAGTAAAAGGAAAAGAG 58.778 40.000 0.00 0.00 0.00 2.85
265 940 6.041296 ACCACGTAGAGTAAAAGGAAAAGAGA 59.959 38.462 0.00 0.00 0.00 3.10
266 941 6.365518 CCACGTAGAGTAAAAGGAAAAGAGAC 59.634 42.308 0.00 0.00 0.00 3.36
267 942 6.921857 CACGTAGAGTAAAAGGAAAAGAGACA 59.078 38.462 0.00 0.00 0.00 3.41
290 965 7.036220 ACAGTACTGAGTTGTACATAATGCTC 58.964 38.462 29.30 1.14 43.65 4.26
296 971 4.253685 AGTTGTACATAATGCTCGCTTGT 58.746 39.130 0.00 0.00 0.00 3.16
303 978 4.093998 ACATAATGCTCGCTTGTTGAAGAG 59.906 41.667 0.00 0.00 0.00 2.85
313 988 3.918591 GCTTGTTGAAGAGAATGTGCATG 59.081 43.478 0.00 0.00 0.00 4.06
371 1046 3.965701 CGATGCGACGCGAGCTTC 61.966 66.667 25.39 25.06 36.02 3.86
455 1155 0.658897 CGCCGGGTTATTACGCATTT 59.341 50.000 2.18 0.00 37.07 2.32
480 1180 2.747822 GCAGGACAGCAGTGCATCG 61.748 63.158 19.20 7.79 38.75 3.84
499 1202 1.968017 CCACTGTTCACCAGCGCAT 60.968 57.895 11.47 0.00 45.68 4.73
500 1203 1.518056 CCACTGTTCACCAGCGCATT 61.518 55.000 11.47 0.00 45.68 3.56
501 1204 1.155889 CACTGTTCACCAGCGCATTA 58.844 50.000 11.47 0.00 45.68 1.90
521 1224 2.334946 ATCGCTGCCAACACGCATT 61.335 52.632 0.00 0.00 38.30 3.56
631 1355 3.075641 GGGGGTCCGAGACTGTCC 61.076 72.222 3.76 0.00 32.47 4.02
811 1551 2.124942 CCGAGGAAGGAAGCTGCC 60.125 66.667 0.73 0.73 0.00 4.85
917 1667 4.371417 CTGCCACTGCCACCCCAT 62.371 66.667 0.00 0.00 36.33 4.00
935 1685 2.874701 CCATCGCCACCTTTCTTCATAG 59.125 50.000 0.00 0.00 0.00 2.23
943 1693 5.398012 GCCACCTTTCTTCATAGGTTCCTAT 60.398 44.000 5.62 5.62 42.01 2.57
944 1694 6.183361 GCCACCTTTCTTCATAGGTTCCTATA 60.183 42.308 10.57 0.00 42.01 1.31
946 1696 7.071321 CCACCTTTCTTCATAGGTTCCTATACT 59.929 40.741 10.57 0.00 42.01 2.12
947 1697 9.144298 CACCTTTCTTCATAGGTTCCTATACTA 57.856 37.037 10.57 0.00 42.01 1.82
960 1711 2.814919 CCTATACTACCGAGCTCCACAG 59.185 54.545 8.47 4.88 0.00 3.66
975 1727 0.875040 CACAGCAGCGCTATCCTCTG 60.875 60.000 10.99 14.54 36.40 3.35
998 1750 3.754850 TCTACTCACTAAGCAGCGTACAA 59.245 43.478 0.00 0.00 0.00 2.41
1214 1981 3.070159 TCAGTCAGCTATTACCATCAGGC 59.930 47.826 0.00 0.00 39.06 4.85
1217 1984 2.634940 TCAGCTATTACCATCAGGCTCC 59.365 50.000 0.00 0.00 39.06 4.70
1220 1987 2.370189 GCTATTACCATCAGGCTCCACT 59.630 50.000 0.00 0.00 39.06 4.00
1247 2020 3.514645 CCAAGTACTTTGCATTGCATCC 58.485 45.455 12.95 0.00 38.76 3.51
1301 2075 4.798152 CGTTTGTACGTGCAGCAG 57.202 55.556 6.41 0.00 42.72 4.24
1302 2076 1.438710 CGTTTGTACGTGCAGCAGC 60.439 57.895 6.41 0.00 42.72 5.25
1603 2389 2.415843 CCGTCGTACATGGCCGAT 59.584 61.111 11.38 0.00 35.30 4.18
1729 2525 6.381133 TGATATAGAAACTGGTCTCTTCTGCA 59.619 38.462 0.00 0.00 31.91 4.41
1752 2548 6.738176 GCATGCATGTAATATTGCCTTTACCA 60.738 38.462 26.79 0.00 38.08 3.25
1792 2591 8.996024 TGATGAATTACGATTGTTTAGTGAGA 57.004 30.769 0.00 0.00 0.00 3.27
1793 2592 9.430623 TGATGAATTACGATTGTTTAGTGAGAA 57.569 29.630 0.00 0.00 0.00 2.87
1796 2595 9.268268 TGAATTACGATTGTTTAGTGAGAAACT 57.732 29.630 0.00 0.00 43.40 2.66
1800 2599 7.548196 ACGATTGTTTAGTGAGAAACTTTGA 57.452 32.000 0.00 0.00 40.56 2.69
1801 2600 7.981142 ACGATTGTTTAGTGAGAAACTTTGAA 58.019 30.769 0.00 0.00 40.56 2.69
1802 2601 8.621286 ACGATTGTTTAGTGAGAAACTTTGAAT 58.379 29.630 0.00 0.00 40.56 2.57
1807 2606 9.268268 TGTTTAGTGAGAAACTTTGAATATCGT 57.732 29.630 1.22 0.00 40.56 3.73
1808 2607 9.742552 GTTTAGTGAGAAACTTTGAATATCGTC 57.257 33.333 0.00 0.00 40.56 4.20
1809 2608 9.483916 TTTAGTGAGAAACTTTGAATATCGTCA 57.516 29.630 0.00 0.00 40.56 4.35
1810 2609 7.962964 AGTGAGAAACTTTGAATATCGTCAA 57.037 32.000 0.00 0.00 34.57 3.18
1811 2610 8.378172 AGTGAGAAACTTTGAATATCGTCAAA 57.622 30.769 3.24 3.24 43.51 2.69
1812 2611 8.283291 AGTGAGAAACTTTGAATATCGTCAAAC 58.717 33.333 0.00 0.00 41.45 2.93
1813 2612 7.266335 GTGAGAAACTTTGAATATCGTCAAACG 59.734 37.037 0.00 0.00 41.45 3.60
1834 2633 9.716507 CAAACGAATATTTTACTCACTTATGGG 57.283 33.333 0.00 0.00 0.00 4.00
1835 2634 9.457436 AAACGAATATTTTACTCACTTATGGGT 57.543 29.630 0.00 0.00 43.97 4.51
1836 2635 8.658499 ACGAATATTTTACTCACTTATGGGTC 57.342 34.615 0.00 0.00 39.47 4.46
1837 2636 7.437267 ACGAATATTTTACTCACTTATGGGTCG 59.563 37.037 0.00 0.00 39.47 4.79
1838 2637 7.437267 CGAATATTTTACTCACTTATGGGTCGT 59.563 37.037 0.00 0.00 39.47 4.34
1839 2638 9.754382 GAATATTTTACTCACTTATGGGTCGTA 57.246 33.333 0.00 0.00 39.47 3.43
1840 2639 9.538508 AATATTTTACTCACTTATGGGTCGTAC 57.461 33.333 0.00 0.00 39.47 3.67
1841 2640 6.594788 TTTTACTCACTTATGGGTCGTACT 57.405 37.500 0.00 0.00 39.47 2.73
1842 2641 5.571784 TTACTCACTTATGGGTCGTACTG 57.428 43.478 0.00 0.00 39.47 2.74
1843 2642 2.165845 ACTCACTTATGGGTCGTACTGC 59.834 50.000 0.00 0.00 32.30 4.40
1844 2643 2.427453 CTCACTTATGGGTCGTACTGCT 59.573 50.000 0.00 0.00 0.00 4.24
1845 2644 3.623703 TCACTTATGGGTCGTACTGCTA 58.376 45.455 0.00 0.00 0.00 3.49
1846 2645 4.212716 TCACTTATGGGTCGTACTGCTAT 58.787 43.478 0.00 0.00 0.00 2.97
1847 2646 5.379187 TCACTTATGGGTCGTACTGCTATA 58.621 41.667 0.00 0.00 0.00 1.31
1848 2647 5.472478 TCACTTATGGGTCGTACTGCTATAG 59.528 44.000 0.00 0.00 0.00 1.31
1849 2648 5.241064 CACTTATGGGTCGTACTGCTATAGT 59.759 44.000 0.84 0.00 43.56 2.12
1850 2649 5.832060 ACTTATGGGTCGTACTGCTATAGTT 59.168 40.000 0.84 0.00 40.89 2.24
1851 2650 6.323225 ACTTATGGGTCGTACTGCTATAGTTT 59.677 38.462 0.84 0.00 40.89 2.66
1852 2651 5.609533 ATGGGTCGTACTGCTATAGTTTT 57.390 39.130 0.84 0.00 40.89 2.43
1853 2652 5.002464 TGGGTCGTACTGCTATAGTTTTC 57.998 43.478 0.84 0.00 40.89 2.29
1854 2653 4.463539 TGGGTCGTACTGCTATAGTTTTCA 59.536 41.667 0.84 0.00 40.89 2.69
1855 2654 5.047164 TGGGTCGTACTGCTATAGTTTTCAA 60.047 40.000 0.84 0.00 40.89 2.69
1856 2655 5.870978 GGGTCGTACTGCTATAGTTTTCAAA 59.129 40.000 0.84 0.00 40.89 2.69
1857 2656 6.537660 GGGTCGTACTGCTATAGTTTTCAAAT 59.462 38.462 0.84 0.00 40.89 2.32
1858 2657 7.399523 GGTCGTACTGCTATAGTTTTCAAATG 58.600 38.462 0.84 0.00 40.89 2.32
1859 2658 7.064253 GGTCGTACTGCTATAGTTTTCAAATGT 59.936 37.037 0.84 0.00 40.89 2.71
1860 2659 9.079833 GTCGTACTGCTATAGTTTTCAAATGTA 57.920 33.333 0.84 0.00 40.89 2.29
1861 2660 9.297586 TCGTACTGCTATAGTTTTCAAATGTAG 57.702 33.333 0.84 0.00 40.89 2.74
1862 2661 8.056571 CGTACTGCTATAGTTTTCAAATGTAGC 58.943 37.037 0.84 5.94 40.89 3.58
1863 2662 7.921786 ACTGCTATAGTTTTCAAATGTAGCA 57.078 32.000 12.71 12.71 40.26 3.49
1864 2663 7.752695 ACTGCTATAGTTTTCAAATGTAGCAC 58.247 34.615 10.21 0.00 38.39 4.40
1865 2664 7.390440 ACTGCTATAGTTTTCAAATGTAGCACA 59.610 33.333 10.21 0.00 38.39 4.57
1866 2665 8.105097 TGCTATAGTTTTCAAATGTAGCACAA 57.895 30.769 10.21 0.00 38.39 3.33
1867 2666 8.572185 TGCTATAGTTTTCAAATGTAGCACAAA 58.428 29.630 10.21 0.00 38.39 2.83
1868 2667 8.850452 GCTATAGTTTTCAAATGTAGCACAAAC 58.150 33.333 0.84 0.00 34.69 2.93
1869 2668 9.891828 CTATAGTTTTCAAATGTAGCACAAACA 57.108 29.630 0.00 0.00 0.00 2.83
1870 2669 6.885735 AGTTTTCAAATGTAGCACAAACAC 57.114 33.333 0.00 0.00 0.00 3.32
1871 2670 5.810074 AGTTTTCAAATGTAGCACAAACACC 59.190 36.000 0.00 0.00 0.00 4.16
1872 2671 4.991153 TTCAAATGTAGCACAAACACCA 57.009 36.364 0.00 0.00 0.00 4.17
1873 2672 4.300189 TCAAATGTAGCACAAACACCAC 57.700 40.909 0.00 0.00 0.00 4.16
1874 2673 3.067461 TCAAATGTAGCACAAACACCACC 59.933 43.478 0.00 0.00 0.00 4.61
1875 2674 2.356665 ATGTAGCACAAACACCACCA 57.643 45.000 0.00 0.00 0.00 4.17
1876 2675 1.674359 TGTAGCACAAACACCACCAG 58.326 50.000 0.00 0.00 0.00 4.00
1877 2676 0.310854 GTAGCACAAACACCACCAGC 59.689 55.000 0.00 0.00 0.00 4.85
1878 2677 0.821711 TAGCACAAACACCACCAGCC 60.822 55.000 0.00 0.00 0.00 4.85
1879 2678 2.422231 GCACAAACACCACCAGCCA 61.422 57.895 0.00 0.00 0.00 4.75
1880 2679 1.437160 CACAAACACCACCAGCCAC 59.563 57.895 0.00 0.00 0.00 5.01
1881 2680 2.118404 ACAAACACCACCAGCCACG 61.118 57.895 0.00 0.00 0.00 4.94
1882 2681 3.216292 AAACACCACCAGCCACGC 61.216 61.111 0.00 0.00 0.00 5.34
1883 2682 3.714487 AAACACCACCAGCCACGCT 62.714 57.895 0.00 0.00 40.77 5.07
1884 2683 4.626081 ACACCACCAGCCACGCTC 62.626 66.667 0.00 0.00 36.40 5.03
1887 2686 4.335647 CCACCAGCCACGCTCCTT 62.336 66.667 0.00 0.00 36.40 3.36
1888 2687 3.052082 CACCAGCCACGCTCCTTG 61.052 66.667 0.00 0.00 36.40 3.61
1889 2688 3.560251 ACCAGCCACGCTCCTTGT 61.560 61.111 0.00 0.00 36.40 3.16
1890 2689 2.281761 CCAGCCACGCTCCTTGTT 60.282 61.111 0.00 0.00 36.40 2.83
1891 2690 2.328099 CCAGCCACGCTCCTTGTTC 61.328 63.158 0.00 0.00 36.40 3.18
1892 2691 2.357517 AGCCACGCTCCTTGTTCG 60.358 61.111 0.00 0.00 30.62 3.95
1893 2692 4.090057 GCCACGCTCCTTGTTCGC 62.090 66.667 0.00 0.00 0.00 4.70
1894 2693 2.664851 CCACGCTCCTTGTTCGCA 60.665 61.111 0.00 0.00 0.00 5.10
1895 2694 2.671177 CCACGCTCCTTGTTCGCAG 61.671 63.158 0.00 0.00 0.00 5.18
1896 2695 1.956170 CACGCTCCTTGTTCGCAGT 60.956 57.895 0.00 0.00 0.00 4.40
1897 2696 0.666274 CACGCTCCTTGTTCGCAGTA 60.666 55.000 0.00 0.00 0.00 2.74
1898 2697 0.388649 ACGCTCCTTGTTCGCAGTAG 60.389 55.000 0.00 0.00 0.00 2.57
1899 2698 0.388649 CGCTCCTTGTTCGCAGTAGT 60.389 55.000 0.00 0.00 0.00 2.73
1900 2699 1.135489 CGCTCCTTGTTCGCAGTAGTA 60.135 52.381 0.00 0.00 0.00 1.82
1901 2700 2.479730 CGCTCCTTGTTCGCAGTAGTAT 60.480 50.000 0.00 0.00 0.00 2.12
1902 2701 3.522553 GCTCCTTGTTCGCAGTAGTATT 58.477 45.455 0.00 0.00 0.00 1.89
1903 2702 3.552294 GCTCCTTGTTCGCAGTAGTATTC 59.448 47.826 0.00 0.00 0.00 1.75
1904 2703 4.678309 GCTCCTTGTTCGCAGTAGTATTCT 60.678 45.833 0.00 0.00 0.00 2.40
1905 2704 5.401531 TCCTTGTTCGCAGTAGTATTCTT 57.598 39.130 0.00 0.00 0.00 2.52
1906 2705 5.168569 TCCTTGTTCGCAGTAGTATTCTTG 58.831 41.667 0.00 0.00 0.00 3.02
1907 2706 4.929808 CCTTGTTCGCAGTAGTATTCTTGT 59.070 41.667 0.00 0.00 0.00 3.16
1908 2707 6.071784 TCCTTGTTCGCAGTAGTATTCTTGTA 60.072 38.462 0.00 0.00 0.00 2.41
1909 2708 6.034683 CCTTGTTCGCAGTAGTATTCTTGTAC 59.965 42.308 0.00 0.00 0.00 2.90
1910 2709 6.263516 TGTTCGCAGTAGTATTCTTGTACT 57.736 37.500 0.00 0.00 38.42 2.73
1911 2710 6.684686 TGTTCGCAGTAGTATTCTTGTACTT 58.315 36.000 0.00 0.00 36.39 2.24
1912 2711 7.819644 TGTTCGCAGTAGTATTCTTGTACTTA 58.180 34.615 0.00 0.00 36.39 2.24
1913 2712 8.464404 TGTTCGCAGTAGTATTCTTGTACTTAT 58.536 33.333 0.00 0.00 36.39 1.73
1914 2713 9.941664 GTTCGCAGTAGTATTCTTGTACTTATA 57.058 33.333 0.00 0.00 36.39 0.98
1943 2742 8.454894 TCTGCATTCTATAAAGCTATACTCTCG 58.545 37.037 0.00 0.00 30.67 4.04
1944 2743 7.539436 TGCATTCTATAAAGCTATACTCTCGG 58.461 38.462 0.00 0.00 30.67 4.63
1945 2744 7.393515 TGCATTCTATAAAGCTATACTCTCGGA 59.606 37.037 0.00 0.00 30.67 4.55
1946 2745 8.244802 GCATTCTATAAAGCTATACTCTCGGAA 58.755 37.037 0.00 0.00 0.00 4.30
1972 2771 6.632171 AAACTTAAATTCGCAATAAGCAGC 57.368 33.333 0.00 0.00 46.13 5.25
1973 2772 5.309323 ACTTAAATTCGCAATAAGCAGCA 57.691 34.783 0.00 0.00 46.13 4.41
1974 2773 5.894807 ACTTAAATTCGCAATAAGCAGCAT 58.105 33.333 0.00 0.00 46.13 3.79
1975 2774 7.026631 ACTTAAATTCGCAATAAGCAGCATA 57.973 32.000 0.00 0.00 46.13 3.14
1976 2775 6.912591 ACTTAAATTCGCAATAAGCAGCATAC 59.087 34.615 0.00 0.00 46.13 2.39
1977 2776 4.898829 AATTCGCAATAAGCAGCATACA 57.101 36.364 0.00 0.00 46.13 2.29
1978 2777 3.673746 TTCGCAATAAGCAGCATACAC 57.326 42.857 0.00 0.00 46.13 2.90
1979 2778 2.905075 TCGCAATAAGCAGCATACACT 58.095 42.857 0.00 0.00 46.13 3.55
1980 2779 2.609002 TCGCAATAAGCAGCATACACTG 59.391 45.455 0.00 0.00 46.13 3.66
1995 2794 6.939551 CATACACTGCAAAGGAGAAATTTG 57.060 37.500 0.00 0.00 39.99 2.32
1996 2795 4.326504 ACACTGCAAAGGAGAAATTTGG 57.673 40.909 0.00 0.00 37.96 3.28
1997 2796 3.706086 ACACTGCAAAGGAGAAATTTGGT 59.294 39.130 0.00 0.00 37.96 3.67
1998 2797 4.053295 CACTGCAAAGGAGAAATTTGGTG 58.947 43.478 0.00 0.00 37.96 4.17
1999 2798 3.062042 CTGCAAAGGAGAAATTTGGTGC 58.938 45.455 0.00 0.00 37.96 5.01
2000 2799 2.699846 TGCAAAGGAGAAATTTGGTGCT 59.300 40.909 0.00 0.00 37.96 4.40
2001 2800 3.894427 TGCAAAGGAGAAATTTGGTGCTA 59.106 39.130 0.00 0.00 37.96 3.49
2002 2801 4.527816 TGCAAAGGAGAAATTTGGTGCTAT 59.472 37.500 0.00 0.00 37.96 2.97
2003 2802 5.714333 TGCAAAGGAGAAATTTGGTGCTATA 59.286 36.000 0.00 0.00 37.96 1.31
2004 2803 6.380846 TGCAAAGGAGAAATTTGGTGCTATAT 59.619 34.615 0.00 0.00 37.96 0.86
2005 2804 7.093377 TGCAAAGGAGAAATTTGGTGCTATATT 60.093 33.333 0.00 0.00 37.96 1.28
2006 2805 7.436376 GCAAAGGAGAAATTTGGTGCTATATTC 59.564 37.037 0.00 0.00 37.96 1.75
2007 2806 8.469200 CAAAGGAGAAATTTGGTGCTATATTCA 58.531 33.333 0.00 0.00 34.66 2.57
2008 2807 8.773033 AAGGAGAAATTTGGTGCTATATTCAT 57.227 30.769 0.00 0.00 0.00 2.57
2009 2808 9.866655 AAGGAGAAATTTGGTGCTATATTCATA 57.133 29.630 0.00 0.00 0.00 2.15
2010 2809 9.866655 AGGAGAAATTTGGTGCTATATTCATAA 57.133 29.630 0.00 0.00 0.00 1.90
2011 2810 9.899226 GGAGAAATTTGGTGCTATATTCATAAC 57.101 33.333 0.00 0.00 0.00 1.89
2014 2813 9.683069 GAAATTTGGTGCTATATTCATAACTGG 57.317 33.333 0.00 0.00 0.00 4.00
2015 2814 6.633500 TTTGGTGCTATATTCATAACTGGC 57.367 37.500 0.00 0.00 0.00 4.85
2016 2815 5.567037 TGGTGCTATATTCATAACTGGCT 57.433 39.130 0.00 0.00 0.00 4.75
2017 2816 5.940617 TGGTGCTATATTCATAACTGGCTT 58.059 37.500 0.00 0.00 0.00 4.35
2018 2817 5.764686 TGGTGCTATATTCATAACTGGCTTG 59.235 40.000 0.00 0.00 0.00 4.01
2019 2818 5.335191 GGTGCTATATTCATAACTGGCTTGC 60.335 44.000 0.00 0.00 0.00 4.01
2020 2819 5.239306 GTGCTATATTCATAACTGGCTTGCA 59.761 40.000 0.00 0.00 0.00 4.08
2021 2820 5.827267 TGCTATATTCATAACTGGCTTGCAA 59.173 36.000 0.00 0.00 0.00 4.08
2022 2821 6.016860 TGCTATATTCATAACTGGCTTGCAAG 60.017 38.462 22.44 22.44 0.00 4.01
2034 2833 2.631418 CTTGCAAGCATGGTCTCAAG 57.369 50.000 14.65 18.38 0.00 3.02
2035 2834 1.884579 CTTGCAAGCATGGTCTCAAGT 59.115 47.619 14.65 0.00 0.00 3.16
2036 2835 1.985473 TGCAAGCATGGTCTCAAGTT 58.015 45.000 0.00 0.00 0.00 2.66
2037 2836 1.610038 TGCAAGCATGGTCTCAAGTTG 59.390 47.619 0.00 0.00 0.00 3.16
2038 2837 1.668047 GCAAGCATGGTCTCAAGTTGC 60.668 52.381 0.00 0.00 32.80 4.17
2039 2838 1.610038 CAAGCATGGTCTCAAGTTGCA 59.390 47.619 0.00 0.00 35.79 4.08
2040 2839 1.985473 AGCATGGTCTCAAGTTGCAA 58.015 45.000 0.00 0.00 35.79 4.08
2041 2840 2.309613 AGCATGGTCTCAAGTTGCAAA 58.690 42.857 0.00 0.00 35.79 3.68
2042 2841 2.694628 AGCATGGTCTCAAGTTGCAAAA 59.305 40.909 0.00 0.00 35.79 2.44
2043 2842 2.796593 GCATGGTCTCAAGTTGCAAAAC 59.203 45.455 0.00 0.00 33.58 2.43
2044 2843 3.737663 GCATGGTCTCAAGTTGCAAAACA 60.738 43.478 0.00 0.00 33.58 2.83
2045 2844 4.431809 CATGGTCTCAAGTTGCAAAACAA 58.568 39.130 0.00 0.00 35.33 2.83
2055 2854 2.613730 TGCAAAACAACGAAACACGA 57.386 40.000 0.00 0.00 45.77 4.35
2056 2855 2.929960 TGCAAAACAACGAAACACGAA 58.070 38.095 0.00 0.00 45.77 3.85
2057 2856 3.502920 TGCAAAACAACGAAACACGAAT 58.497 36.364 0.00 0.00 45.77 3.34
2058 2857 3.921021 TGCAAAACAACGAAACACGAATT 59.079 34.783 0.00 0.00 45.77 2.17
2059 2858 5.093457 TGCAAAACAACGAAACACGAATTA 58.907 33.333 0.00 0.00 45.77 1.40
2060 2859 5.571741 TGCAAAACAACGAAACACGAATTAA 59.428 32.000 0.00 0.00 45.77 1.40
2061 2860 5.886755 GCAAAACAACGAAACACGAATTAAC 59.113 36.000 0.00 0.00 45.77 2.01
2062 2861 6.237358 GCAAAACAACGAAACACGAATTAACT 60.237 34.615 0.00 0.00 45.77 2.24
2063 2862 6.784068 AAACAACGAAACACGAATTAACTG 57.216 33.333 0.00 0.00 45.77 3.16
2064 2863 4.839796 ACAACGAAACACGAATTAACTGG 58.160 39.130 0.00 0.00 45.77 4.00
2065 2864 4.333372 ACAACGAAACACGAATTAACTGGT 59.667 37.500 0.00 0.00 45.77 4.00
2066 2865 5.163733 ACAACGAAACACGAATTAACTGGTT 60.164 36.000 0.00 0.00 45.77 3.67
2067 2866 5.086888 ACGAAACACGAATTAACTGGTTC 57.913 39.130 0.00 0.00 45.77 3.62
2068 2867 4.812626 ACGAAACACGAATTAACTGGTTCT 59.187 37.500 0.00 0.00 45.77 3.01
2069 2868 5.137403 CGAAACACGAATTAACTGGTTCTG 58.863 41.667 0.00 0.00 45.77 3.02
2070 2869 5.050634 CGAAACACGAATTAACTGGTTCTGA 60.051 40.000 0.00 0.00 45.77 3.27
2071 2870 6.510478 CGAAACACGAATTAACTGGTTCTGAA 60.510 38.462 0.00 0.00 45.77 3.02
2072 2871 6.877611 AACACGAATTAACTGGTTCTGAAT 57.122 33.333 0.00 0.00 0.00 2.57
2073 2872 7.972832 AACACGAATTAACTGGTTCTGAATA 57.027 32.000 0.00 0.00 0.00 1.75
2074 2873 7.360575 ACACGAATTAACTGGTTCTGAATAC 57.639 36.000 0.00 0.00 0.00 1.89
2075 2874 7.159372 ACACGAATTAACTGGTTCTGAATACT 58.841 34.615 0.00 0.00 0.00 2.12
2076 2875 7.331193 ACACGAATTAACTGGTTCTGAATACTC 59.669 37.037 0.00 0.00 0.00 2.59
2077 2876 6.530534 ACGAATTAACTGGTTCTGAATACTCG 59.469 38.462 0.00 0.00 0.00 4.18
2078 2877 6.530534 CGAATTAACTGGTTCTGAATACTCGT 59.469 38.462 0.00 0.00 0.00 4.18
2079 2878 7.063074 CGAATTAACTGGTTCTGAATACTCGTT 59.937 37.037 0.00 2.15 0.00 3.85
2080 2879 7.596749 ATTAACTGGTTCTGAATACTCGTTG 57.403 36.000 0.00 0.00 0.00 4.10
2081 2880 4.866508 ACTGGTTCTGAATACTCGTTGA 57.133 40.909 0.00 0.00 0.00 3.18
2082 2881 4.557205 ACTGGTTCTGAATACTCGTTGAC 58.443 43.478 0.00 0.00 0.00 3.18
2083 2882 4.038763 ACTGGTTCTGAATACTCGTTGACA 59.961 41.667 0.00 0.00 0.00 3.58
2084 2883 4.304110 TGGTTCTGAATACTCGTTGACAC 58.696 43.478 0.00 0.00 0.00 3.67
2085 2884 4.202172 TGGTTCTGAATACTCGTTGACACA 60.202 41.667 0.00 0.00 0.00 3.72
2086 2885 4.748102 GGTTCTGAATACTCGTTGACACAA 59.252 41.667 0.00 0.00 0.00 3.33
2087 2886 5.408604 GGTTCTGAATACTCGTTGACACAAT 59.591 40.000 0.00 0.00 0.00 2.71
2088 2887 6.073222 GGTTCTGAATACTCGTTGACACAATT 60.073 38.462 0.00 0.00 0.00 2.32
2089 2888 7.117236 GGTTCTGAATACTCGTTGACACAATTA 59.883 37.037 0.00 0.00 0.00 1.40
2090 2889 8.656849 GTTCTGAATACTCGTTGACACAATTAT 58.343 33.333 0.00 0.00 0.00 1.28
2091 2890 8.771920 TCTGAATACTCGTTGACACAATTATT 57.228 30.769 0.00 0.00 0.00 1.40
2092 2891 9.863845 TCTGAATACTCGTTGACACAATTATTA 57.136 29.630 0.00 0.00 0.00 0.98
2095 2894 9.422196 GAATACTCGTTGACACAATTATTAAGC 57.578 33.333 0.00 0.00 0.00 3.09
2096 2895 6.795098 ACTCGTTGACACAATTATTAAGCA 57.205 33.333 0.00 0.00 0.00 3.91
2097 2896 7.377766 ACTCGTTGACACAATTATTAAGCAT 57.622 32.000 0.00 0.00 0.00 3.79
2098 2897 8.487313 ACTCGTTGACACAATTATTAAGCATA 57.513 30.769 0.00 0.00 0.00 3.14
2099 2898 9.109393 ACTCGTTGACACAATTATTAAGCATAT 57.891 29.630 0.00 0.00 0.00 1.78
2100 2899 9.373750 CTCGTTGACACAATTATTAAGCATATG 57.626 33.333 0.00 0.00 0.00 1.78
2101 2900 9.103861 TCGTTGACACAATTATTAAGCATATGA 57.896 29.630 6.97 0.00 0.00 2.15
2102 2901 9.882996 CGTTGACACAATTATTAAGCATATGAT 57.117 29.630 6.97 0.00 0.00 2.45
2130 2929 4.056050 ACGATTGTTTAGTGAGAAACGCT 58.944 39.130 0.00 0.00 41.36 5.07
2131 2930 4.084537 ACGATTGTTTAGTGAGAAACGCTG 60.085 41.667 0.00 0.00 41.36 5.18
2141 2940 3.857665 GTGAGAAACGCTGAATATCGTCA 59.142 43.478 0.00 0.00 38.03 4.35
2158 2957 4.563524 CGTCAAACGAATACTGAACTCC 57.436 45.455 0.00 0.00 46.05 3.85
2159 2958 3.367025 CGTCAAACGAATACTGAACTCCC 59.633 47.826 0.00 0.00 46.05 4.30
2160 2959 4.312443 GTCAAACGAATACTGAACTCCCA 58.688 43.478 0.00 0.00 0.00 4.37
2161 2960 4.753107 GTCAAACGAATACTGAACTCCCAA 59.247 41.667 0.00 0.00 0.00 4.12
2162 2961 5.237779 GTCAAACGAATACTGAACTCCCAAA 59.762 40.000 0.00 0.00 0.00 3.28
2163 2962 5.237779 TCAAACGAATACTGAACTCCCAAAC 59.762 40.000 0.00 0.00 0.00 2.93
2164 2963 3.323243 ACGAATACTGAACTCCCAAACG 58.677 45.455 0.00 0.00 0.00 3.60
2165 2964 2.671396 CGAATACTGAACTCCCAAACGG 59.329 50.000 0.00 0.00 0.00 4.44
2166 2965 3.615592 CGAATACTGAACTCCCAAACGGA 60.616 47.826 0.00 0.00 38.83 4.69
2167 2966 2.825861 TACTGAACTCCCAAACGGAC 57.174 50.000 0.00 0.00 34.86 4.79
2168 2967 0.834612 ACTGAACTCCCAAACGGACA 59.165 50.000 0.00 0.00 34.86 4.02
2169 2968 1.226746 CTGAACTCCCAAACGGACAC 58.773 55.000 0.00 0.00 34.86 3.67
2170 2969 0.179040 TGAACTCCCAAACGGACACC 60.179 55.000 0.00 0.00 34.86 4.16
2171 2970 0.179040 GAACTCCCAAACGGACACCA 60.179 55.000 0.00 0.00 34.86 4.17
2172 2971 0.476771 AACTCCCAAACGGACACCAT 59.523 50.000 0.00 0.00 34.86 3.55
2173 2972 0.476771 ACTCCCAAACGGACACCATT 59.523 50.000 0.00 0.00 34.86 3.16
2174 2973 1.133606 ACTCCCAAACGGACACCATTT 60.134 47.619 0.00 0.00 34.86 2.32
2175 2974 1.269448 CTCCCAAACGGACACCATTTG 59.731 52.381 2.90 2.90 34.86 2.32
2176 2975 1.036707 CCCAAACGGACACCATTTGT 58.963 50.000 8.18 0.00 43.10 2.83
2177 2976 2.158652 TCCCAAACGGACACCATTTGTA 60.159 45.455 8.18 0.00 39.17 2.41
2178 2977 2.623889 CCCAAACGGACACCATTTGTAA 59.376 45.455 8.18 0.00 39.17 2.41
2179 2978 3.068307 CCCAAACGGACACCATTTGTAAA 59.932 43.478 8.18 0.00 39.17 2.01
2180 2979 4.262249 CCCAAACGGACACCATTTGTAAAT 60.262 41.667 8.18 0.00 39.17 1.40
2181 2980 4.683781 CCAAACGGACACCATTTGTAAATG 59.316 41.667 9.76 9.76 44.12 2.32
2182 2981 5.508153 CCAAACGGACACCATTTGTAAATGA 60.508 40.000 16.67 0.00 46.72 2.57
2183 2982 5.975693 AACGGACACCATTTGTAAATGAT 57.024 34.783 16.67 0.00 46.72 2.45
2184 2983 5.309323 ACGGACACCATTTGTAAATGATG 57.691 39.130 16.67 13.18 46.72 3.07
2185 2984 5.007034 ACGGACACCATTTGTAAATGATGA 58.993 37.500 16.52 0.00 46.72 2.92
2186 2985 5.106317 ACGGACACCATTTGTAAATGATGAC 60.106 40.000 16.52 11.00 46.72 3.06
2187 2986 5.106357 CGGACACCATTTGTAAATGATGACA 60.106 40.000 16.52 0.00 46.72 3.58
2188 2987 6.569418 CGGACACCATTTGTAAATGATGACAA 60.569 38.462 16.52 0.00 46.72 3.18
2189 2988 6.586082 GGACACCATTTGTAAATGATGACAAC 59.414 38.462 16.52 6.57 46.72 3.32
2190 2989 6.148948 ACACCATTTGTAAATGATGACAACG 58.851 36.000 16.52 2.66 46.72 4.10
2191 2990 5.572511 CACCATTTGTAAATGATGACAACGG 59.427 40.000 16.67 2.46 46.72 4.44
2205 3004 5.176407 TGACAACGGGTTACATTTGAAAG 57.824 39.130 0.00 0.00 0.00 2.62
2206 3005 3.972403 ACAACGGGTTACATTTGAAAGC 58.028 40.909 0.00 0.00 0.00 3.51
2230 3029 3.313526 AGAACATCGCAATAATGAGCACC 59.686 43.478 0.00 0.00 0.00 5.01
2235 3034 1.132834 CGCAATAATGAGCACCAGCAA 59.867 47.619 0.00 0.00 45.49 3.91
2237 3036 2.094597 GCAATAATGAGCACCAGCAACA 60.095 45.455 0.00 0.00 45.49 3.33
2264 3064 0.532862 AACCACACTGCAACGGAGAG 60.533 55.000 0.00 0.00 0.00 3.20
2267 3067 1.581934 CACACTGCAACGGAGAGAAA 58.418 50.000 0.00 0.00 0.00 2.52
2270 3070 3.003689 CACACTGCAACGGAGAGAAATTT 59.996 43.478 0.00 0.00 0.00 1.82
2273 3073 3.004734 ACTGCAACGGAGAGAAATTTTGG 59.995 43.478 0.00 0.00 0.00 3.28
2275 3075 3.243367 TGCAACGGAGAGAAATTTTGGTG 60.243 43.478 0.00 0.00 0.00 4.17
2279 3079 3.751698 ACGGAGAGAAATTTTGGTGCTAC 59.248 43.478 0.00 0.00 0.00 3.58
2324 3126 1.242076 AGCATGGTCTCAAGTTGCAC 58.758 50.000 0.00 0.00 35.79 4.57
2417 3219 4.463050 TTCTGGTACCCAAAAAGGTGAT 57.537 40.909 10.07 0.00 41.42 3.06
2421 3223 4.085733 TGGTACCCAAAAAGGTGATGATG 58.914 43.478 10.07 0.00 41.42 3.07
2428 3230 4.158394 CCAAAAAGGTGATGATGAACCGAT 59.842 41.667 0.00 0.00 41.61 4.18
2429 3231 5.356751 CCAAAAAGGTGATGATGAACCGATA 59.643 40.000 0.00 0.00 41.61 2.92
2430 3232 6.127758 CCAAAAAGGTGATGATGAACCGATAA 60.128 38.462 0.00 0.00 41.61 1.75
2431 3233 7.416664 CCAAAAAGGTGATGATGAACCGATAAT 60.417 37.037 0.00 0.00 41.61 1.28
2432 3234 8.620416 CAAAAAGGTGATGATGAACCGATAATA 58.380 33.333 0.00 0.00 41.61 0.98
2617 3419 3.204467 TTCCCTGGCGTTCTTGGGG 62.204 63.158 0.00 0.00 40.05 4.96
2681 3483 9.912634 AAAATGGTTGTCTGTAACATTTATCTG 57.087 29.630 0.00 0.00 37.82 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.757188 CCTCCCTCTACAGTCCGCAT 60.757 60.000 0.00 0.00 0.00 4.73
1 2 1.379977 CCTCCCTCTACAGTCCGCA 60.380 63.158 0.00 0.00 0.00 5.69
2 3 2.128507 CCCTCCCTCTACAGTCCGC 61.129 68.421 0.00 0.00 0.00 5.54
3 4 2.128507 GCCCTCCCTCTACAGTCCG 61.129 68.421 0.00 0.00 0.00 4.79
5 6 2.128507 CCGCCCTCCCTCTACAGTC 61.129 68.421 0.00 0.00 0.00 3.51
6 7 2.042843 CCGCCCTCCCTCTACAGT 60.043 66.667 0.00 0.00 0.00 3.55
7 8 1.265454 AAACCGCCCTCCCTCTACAG 61.265 60.000 0.00 0.00 0.00 2.74
8 9 1.229400 AAACCGCCCTCCCTCTACA 60.229 57.895 0.00 0.00 0.00 2.74
9 10 1.221021 CAAACCGCCCTCCCTCTAC 59.779 63.158 0.00 0.00 0.00 2.59
10 11 1.229400 ACAAACCGCCCTCCCTCTA 60.229 57.895 0.00 0.00 0.00 2.43
12 13 2.359975 CACAAACCGCCCTCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
19 20 4.966787 TGAGGCCCACAAACCGCC 62.967 66.667 0.00 0.00 43.35 6.13
20 21 3.670377 GTGAGGCCCACAAACCGC 61.670 66.667 16.71 0.00 45.03 5.68
28 29 4.329545 GCGTTCCAGTGAGGCCCA 62.330 66.667 0.00 0.00 37.29 5.36
29 30 3.628646 ATGCGTTCCAGTGAGGCCC 62.629 63.158 0.00 0.00 37.29 5.80
30 31 2.045926 ATGCGTTCCAGTGAGGCC 60.046 61.111 0.00 0.00 37.29 5.19
31 32 2.401766 CCATGCGTTCCAGTGAGGC 61.402 63.158 0.00 0.00 37.29 4.70
32 33 2.401766 GCCATGCGTTCCAGTGAGG 61.402 63.158 0.00 0.00 39.47 3.86
33 34 1.028330 ATGCCATGCGTTCCAGTGAG 61.028 55.000 0.00 0.00 0.00 3.51
34 35 1.002257 ATGCCATGCGTTCCAGTGA 60.002 52.632 0.00 0.00 0.00 3.41
35 36 1.138036 CATGCCATGCGTTCCAGTG 59.862 57.895 0.00 0.00 0.00 3.66
45 46 3.896133 GCCTCCACGCATGCCATG 61.896 66.667 13.15 10.87 0.00 3.66
49 50 1.230635 AATATCGCCTCCACGCATGC 61.231 55.000 7.91 7.91 0.00 4.06
50 51 1.069703 CAAATATCGCCTCCACGCATG 60.070 52.381 0.00 0.00 0.00 4.06
51 52 1.202639 TCAAATATCGCCTCCACGCAT 60.203 47.619 0.00 0.00 0.00 4.73
52 53 0.176910 TCAAATATCGCCTCCACGCA 59.823 50.000 0.00 0.00 0.00 5.24
53 54 0.582005 GTCAAATATCGCCTCCACGC 59.418 55.000 0.00 0.00 0.00 5.34
54 55 1.217882 GGTCAAATATCGCCTCCACG 58.782 55.000 0.00 0.00 0.00 4.94
55 56 2.325583 TGGTCAAATATCGCCTCCAC 57.674 50.000 0.00 0.00 0.00 4.02
56 57 2.238646 ACTTGGTCAAATATCGCCTCCA 59.761 45.455 0.00 0.00 0.00 3.86
57 58 2.919228 ACTTGGTCAAATATCGCCTCC 58.081 47.619 0.00 0.00 0.00 4.30
58 59 3.938963 TGAACTTGGTCAAATATCGCCTC 59.061 43.478 0.00 0.00 0.00 4.70
59 60 3.950397 TGAACTTGGTCAAATATCGCCT 58.050 40.909 0.00 0.00 0.00 5.52
60 61 4.900635 ATGAACTTGGTCAAATATCGCC 57.099 40.909 0.00 0.00 0.00 5.54
61 62 6.358118 TGTATGAACTTGGTCAAATATCGC 57.642 37.500 0.00 0.00 0.00 4.58
62 63 9.619316 TTTTTGTATGAACTTGGTCAAATATCG 57.381 29.630 0.00 0.00 0.00 2.92
104 105 9.797642 TGGATCTAATGATAGTAATGTTGCATT 57.202 29.630 0.00 0.00 32.19 3.56
105 106 9.970553 ATGGATCTAATGATAGTAATGTTGCAT 57.029 29.630 0.00 0.00 32.19 3.96
106 107 9.797642 AATGGATCTAATGATAGTAATGTTGCA 57.202 29.630 0.00 0.00 32.19 4.08
222 223 4.513692 CGTGGTAGAAAGGTTTGATGTCAA 59.486 41.667 0.00 0.00 0.00 3.18
223 224 4.062293 CGTGGTAGAAAGGTTTGATGTCA 58.938 43.478 0.00 0.00 0.00 3.58
224 225 4.062991 ACGTGGTAGAAAGGTTTGATGTC 58.937 43.478 0.00 0.00 0.00 3.06
225 226 4.081322 ACGTGGTAGAAAGGTTTGATGT 57.919 40.909 0.00 0.00 0.00 3.06
226 227 5.475719 TCTACGTGGTAGAAAGGTTTGATG 58.524 41.667 0.00 0.00 41.45 3.07
227 228 5.245526 ACTCTACGTGGTAGAAAGGTTTGAT 59.754 40.000 0.00 0.00 43.36 2.57
228 229 4.586001 ACTCTACGTGGTAGAAAGGTTTGA 59.414 41.667 0.00 0.00 43.36 2.69
234 909 6.917533 TCCTTTTACTCTACGTGGTAGAAAG 58.082 40.000 0.00 5.71 43.36 2.62
235 910 6.899393 TCCTTTTACTCTACGTGGTAGAAA 57.101 37.500 0.00 0.00 43.36 2.52
241 916 6.365518 GTCTCTTTTCCTTTTACTCTACGTGG 59.634 42.308 0.00 0.00 0.00 4.94
242 917 6.921857 TGTCTCTTTTCCTTTTACTCTACGTG 59.078 38.462 0.00 0.00 0.00 4.49
246 921 9.364653 AGTACTGTCTCTTTTCCTTTTACTCTA 57.635 33.333 0.00 0.00 0.00 2.43
247 922 8.145122 CAGTACTGTCTCTTTTCCTTTTACTCT 58.855 37.037 15.06 0.00 0.00 3.24
251 926 8.019656 ACTCAGTACTGTCTCTTTTCCTTTTA 57.980 34.615 21.99 0.00 0.00 1.52
256 931 5.602628 ACAACTCAGTACTGTCTCTTTTCC 58.397 41.667 21.99 0.00 0.00 3.13
260 935 6.902771 ATGTACAACTCAGTACTGTCTCTT 57.097 37.500 21.99 8.25 43.65 2.85
264 939 7.036220 AGCATTATGTACAACTCAGTACTGTC 58.964 38.462 21.99 6.50 43.65 3.51
265 940 6.936279 AGCATTATGTACAACTCAGTACTGT 58.064 36.000 21.99 6.36 43.65 3.55
266 941 6.197282 CGAGCATTATGTACAACTCAGTACTG 59.803 42.308 17.17 17.17 43.65 2.74
267 942 6.266323 CGAGCATTATGTACAACTCAGTACT 58.734 40.000 0.00 0.00 43.65 2.73
290 965 2.031769 TGCACATTCTCTTCAACAAGCG 60.032 45.455 0.00 0.00 0.00 4.68
296 971 5.366829 CAAGTCATGCACATTCTCTTCAA 57.633 39.130 0.00 0.00 0.00 2.69
313 988 1.347817 CGCTGTCCTTCGAGCAAGTC 61.348 60.000 0.00 0.00 34.69 3.01
378 1053 2.701780 CCTGGAGTCCGTCTGACCG 61.702 68.421 4.30 0.00 45.68 4.79
455 1155 3.002583 TGCTGTCCTGCCGGATGA 61.003 61.111 5.05 0.00 42.43 2.92
499 1202 1.906994 GCGTGTTGGCAGCGATGTAA 61.907 55.000 1.22 0.00 0.00 2.41
500 1203 2.387445 GCGTGTTGGCAGCGATGTA 61.387 57.895 1.22 0.00 0.00 2.29
501 1204 3.726517 GCGTGTTGGCAGCGATGT 61.727 61.111 1.22 0.00 0.00 3.06
576 1289 2.657237 CGTGGTCTGGTCTGGTCC 59.343 66.667 0.00 0.00 0.00 4.46
676 1400 0.034960 TGCTAACCATGCCGCCTTTA 60.035 50.000 0.00 0.00 0.00 1.85
677 1401 1.304052 TGCTAACCATGCCGCCTTT 60.304 52.632 0.00 0.00 0.00 3.11
678 1402 1.750399 CTGCTAACCATGCCGCCTT 60.750 57.895 0.00 0.00 0.00 4.35
679 1403 1.987807 ATCTGCTAACCATGCCGCCT 61.988 55.000 0.00 0.00 0.00 5.52
680 1404 1.526917 ATCTGCTAACCATGCCGCC 60.527 57.895 0.00 0.00 0.00 6.13
771 1511 2.885644 CGAATCGGTGGACGCCAG 60.886 66.667 2.51 0.00 43.86 4.85
881 1629 1.305718 AGGAGGTGAGGTGAGAGGC 60.306 63.158 0.00 0.00 0.00 4.70
917 1667 1.906574 ACCTATGAAGAAAGGTGGCGA 59.093 47.619 0.00 0.00 44.53 5.54
935 1685 2.819019 GGAGCTCGGTAGTATAGGAACC 59.181 54.545 7.83 0.00 0.00 3.62
943 1693 0.323087 TGCTGTGGAGCTCGGTAGTA 60.323 55.000 7.83 2.14 46.39 1.82
944 1694 1.599606 CTGCTGTGGAGCTCGGTAGT 61.600 60.000 7.83 0.00 46.39 2.73
946 1696 3.006756 GCTGCTGTGGAGCTCGGTA 62.007 63.158 7.83 0.00 46.39 4.02
947 1697 4.385405 GCTGCTGTGGAGCTCGGT 62.385 66.667 7.83 0.00 46.39 4.69
960 1711 0.955178 TAGACAGAGGATAGCGCTGC 59.045 55.000 22.90 12.14 33.03 5.25
975 1727 2.923605 ACGCTGCTTAGTGAGTAGAC 57.076 50.000 4.13 0.00 40.20 2.59
1162 1926 3.003173 CTGGGGAGGGAACGAGCA 61.003 66.667 0.00 0.00 0.00 4.26
1214 1981 2.180276 AGTACTTGGCCTGTAGTGGAG 58.820 52.381 3.32 0.00 0.00 3.86
1217 1984 2.484264 GCAAAGTACTTGGCCTGTAGTG 59.516 50.000 22.44 8.52 33.45 2.74
1220 1987 2.940994 TGCAAAGTACTTGGCCTGTA 57.059 45.000 28.25 11.44 38.73 2.74
1534 2308 1.428620 GTAGTCGTCCAGGTCGAGC 59.571 63.158 9.23 6.48 37.99 5.03
1617 2403 4.824166 CGTACGCCACCTCCGTCG 62.824 72.222 0.52 0.00 39.88 5.12
1699 2485 6.578023 AGAGACCAGTTTCTATATCACTTGC 58.422 40.000 0.00 0.00 0.00 4.01
1706 2492 6.798427 TGCAGAAGAGACCAGTTTCTATAT 57.202 37.500 0.00 0.00 30.43 0.86
1707 2493 6.577103 CATGCAGAAGAGACCAGTTTCTATA 58.423 40.000 0.00 0.00 30.43 1.31
1729 2525 6.975196 TGGTAAAGGCAATATTACATGCAT 57.025 33.333 0.00 0.00 44.32 3.96
1782 2581 9.742552 GACGATATTCAAAGTTTCTCACTAAAC 57.257 33.333 0.00 0.00 39.22 2.01
1783 2582 9.483916 TGACGATATTCAAAGTTTCTCACTAAA 57.516 29.630 0.00 0.00 32.94 1.85
1786 2585 7.962964 TTGACGATATTCAAAGTTTCTCACT 57.037 32.000 0.00 0.00 37.30 3.41
1787 2586 7.266335 CGTTTGACGATATTCAAAGTTTCTCAC 59.734 37.037 3.33 0.00 46.05 3.51
1808 2607 9.716507 CCCATAAGTGAGTAAAATATTCGTTTG 57.283 33.333 0.00 0.00 0.00 2.93
1809 2608 9.457436 ACCCATAAGTGAGTAAAATATTCGTTT 57.543 29.630 0.00 0.00 0.00 3.60
1810 2609 9.106070 GACCCATAAGTGAGTAAAATATTCGTT 57.894 33.333 0.00 0.00 0.00 3.85
1811 2610 7.437267 CGACCCATAAGTGAGTAAAATATTCGT 59.563 37.037 0.00 0.00 0.00 3.85
1812 2611 7.437267 ACGACCCATAAGTGAGTAAAATATTCG 59.563 37.037 0.00 0.00 0.00 3.34
1813 2612 8.658499 ACGACCCATAAGTGAGTAAAATATTC 57.342 34.615 0.00 0.00 0.00 1.75
1814 2613 9.538508 GTACGACCCATAAGTGAGTAAAATATT 57.461 33.333 0.00 0.00 0.00 1.28
1816 2615 8.192774 CAGTACGACCCATAAGTGAGTAAAATA 58.807 37.037 0.00 0.00 0.00 1.40
1817 2616 7.039882 CAGTACGACCCATAAGTGAGTAAAAT 58.960 38.462 0.00 0.00 0.00 1.82
1818 2617 6.392354 CAGTACGACCCATAAGTGAGTAAAA 58.608 40.000 0.00 0.00 0.00 1.52
1819 2618 5.622914 GCAGTACGACCCATAAGTGAGTAAA 60.623 44.000 0.00 0.00 0.00 2.01
1820 2619 4.142315 GCAGTACGACCCATAAGTGAGTAA 60.142 45.833 0.00 0.00 0.00 2.24
1821 2620 3.379372 GCAGTACGACCCATAAGTGAGTA 59.621 47.826 0.00 0.00 0.00 2.59
1823 2622 2.427453 AGCAGTACGACCCATAAGTGAG 59.573 50.000 0.00 0.00 0.00 3.51
1824 2623 2.453521 AGCAGTACGACCCATAAGTGA 58.546 47.619 0.00 0.00 0.00 3.41
1826 2625 5.383476 ACTATAGCAGTACGACCCATAAGT 58.617 41.667 0.00 0.00 34.98 2.24
1828 2627 6.720112 AAACTATAGCAGTACGACCCATAA 57.280 37.500 0.00 0.00 36.04 1.90
1830 2629 5.128171 TGAAAACTATAGCAGTACGACCCAT 59.872 40.000 0.00 0.00 36.04 4.00
1831 2630 4.463539 TGAAAACTATAGCAGTACGACCCA 59.536 41.667 0.00 0.00 36.04 4.51
1832 2631 5.002464 TGAAAACTATAGCAGTACGACCC 57.998 43.478 0.00 0.00 36.04 4.46
1833 2632 6.956299 TTTGAAAACTATAGCAGTACGACC 57.044 37.500 0.00 0.00 36.04 4.79
1834 2633 7.960793 ACATTTGAAAACTATAGCAGTACGAC 58.039 34.615 0.00 0.00 36.04 4.34
1835 2634 9.297586 CTACATTTGAAAACTATAGCAGTACGA 57.702 33.333 0.00 0.00 36.04 3.43
1836 2635 8.056571 GCTACATTTGAAAACTATAGCAGTACG 58.943 37.037 0.00 0.00 36.04 3.67
1837 2636 8.879759 TGCTACATTTGAAAACTATAGCAGTAC 58.120 33.333 0.00 0.00 38.81 2.73
1838 2637 8.879759 GTGCTACATTTGAAAACTATAGCAGTA 58.120 33.333 12.82 0.00 42.94 2.74
1839 2638 7.390440 TGTGCTACATTTGAAAACTATAGCAGT 59.610 33.333 12.82 0.00 42.94 4.40
1840 2639 7.751732 TGTGCTACATTTGAAAACTATAGCAG 58.248 34.615 12.82 0.00 42.94 4.24
1841 2640 7.680442 TGTGCTACATTTGAAAACTATAGCA 57.320 32.000 0.00 10.00 40.79 3.49
1842 2641 8.850452 GTTTGTGCTACATTTGAAAACTATAGC 58.150 33.333 0.00 0.00 35.28 2.97
1843 2642 9.891828 TGTTTGTGCTACATTTGAAAACTATAG 57.108 29.630 0.00 0.00 0.00 1.31
1844 2643 9.672086 GTGTTTGTGCTACATTTGAAAACTATA 57.328 29.630 0.00 0.00 0.00 1.31
1845 2644 7.651704 GGTGTTTGTGCTACATTTGAAAACTAT 59.348 33.333 0.00 0.00 0.00 2.12
1846 2645 6.975772 GGTGTTTGTGCTACATTTGAAAACTA 59.024 34.615 0.00 0.00 0.00 2.24
1847 2646 5.810074 GGTGTTTGTGCTACATTTGAAAACT 59.190 36.000 0.00 0.00 0.00 2.66
1848 2647 5.578727 TGGTGTTTGTGCTACATTTGAAAAC 59.421 36.000 0.00 0.00 0.00 2.43
1849 2648 5.578727 GTGGTGTTTGTGCTACATTTGAAAA 59.421 36.000 0.00 0.00 0.00 2.29
1850 2649 5.105752 GTGGTGTTTGTGCTACATTTGAAA 58.894 37.500 0.00 0.00 0.00 2.69
1851 2650 4.440802 GGTGGTGTTTGTGCTACATTTGAA 60.441 41.667 0.00 0.00 0.00 2.69
1852 2651 3.067461 GGTGGTGTTTGTGCTACATTTGA 59.933 43.478 0.00 0.00 0.00 2.69
1853 2652 3.181482 TGGTGGTGTTTGTGCTACATTTG 60.181 43.478 0.00 0.00 0.00 2.32
1854 2653 3.027412 TGGTGGTGTTTGTGCTACATTT 58.973 40.909 0.00 0.00 0.00 2.32
1855 2654 2.622942 CTGGTGGTGTTTGTGCTACATT 59.377 45.455 0.00 0.00 0.00 2.71
1856 2655 2.229792 CTGGTGGTGTTTGTGCTACAT 58.770 47.619 0.00 0.00 0.00 2.29
1857 2656 1.674359 CTGGTGGTGTTTGTGCTACA 58.326 50.000 0.00 0.00 0.00 2.74
1858 2657 0.310854 GCTGGTGGTGTTTGTGCTAC 59.689 55.000 0.00 0.00 0.00 3.58
1859 2658 0.821711 GGCTGGTGGTGTTTGTGCTA 60.822 55.000 0.00 0.00 0.00 3.49
1860 2659 2.127232 GGCTGGTGGTGTTTGTGCT 61.127 57.895 0.00 0.00 0.00 4.40
1861 2660 2.417097 GGCTGGTGGTGTTTGTGC 59.583 61.111 0.00 0.00 0.00 4.57
1862 2661 1.437160 GTGGCTGGTGGTGTTTGTG 59.563 57.895 0.00 0.00 0.00 3.33
1863 2662 2.118404 CGTGGCTGGTGGTGTTTGT 61.118 57.895 0.00 0.00 0.00 2.83
1864 2663 2.721231 CGTGGCTGGTGGTGTTTG 59.279 61.111 0.00 0.00 0.00 2.93
1865 2664 3.216292 GCGTGGCTGGTGGTGTTT 61.216 61.111 0.00 0.00 0.00 2.83
1866 2665 4.189580 AGCGTGGCTGGTGGTGTT 62.190 61.111 0.00 0.00 37.57 3.32
1867 2666 4.626081 GAGCGTGGCTGGTGGTGT 62.626 66.667 0.00 0.00 39.88 4.16
1870 2669 4.335647 AAGGAGCGTGGCTGGTGG 62.336 66.667 0.00 0.00 39.88 4.61
1871 2670 3.052082 CAAGGAGCGTGGCTGGTG 61.052 66.667 0.00 0.00 39.88 4.17
1872 2671 3.120086 AACAAGGAGCGTGGCTGGT 62.120 57.895 0.00 0.00 39.88 4.00
1873 2672 2.281761 AACAAGGAGCGTGGCTGG 60.282 61.111 0.00 0.00 39.88 4.85
1874 2673 2.671177 CGAACAAGGAGCGTGGCTG 61.671 63.158 0.00 0.00 39.88 4.85
1875 2674 2.357517 CGAACAAGGAGCGTGGCT 60.358 61.111 0.00 0.00 43.88 4.75
1876 2675 4.090057 GCGAACAAGGAGCGTGGC 62.090 66.667 0.00 0.00 0.00 5.01
1877 2676 2.664851 TGCGAACAAGGAGCGTGG 60.665 61.111 0.00 0.00 0.00 4.94
1878 2677 0.666274 TACTGCGAACAAGGAGCGTG 60.666 55.000 0.00 0.00 32.47 5.34
1879 2678 0.388649 CTACTGCGAACAAGGAGCGT 60.389 55.000 0.00 0.00 32.47 5.07
1880 2679 0.388649 ACTACTGCGAACAAGGAGCG 60.389 55.000 0.00 0.00 32.47 5.03
1881 2680 2.649331 TACTACTGCGAACAAGGAGC 57.351 50.000 0.00 0.00 32.47 4.70
1882 2681 5.000012 AGAATACTACTGCGAACAAGGAG 58.000 43.478 0.00 0.00 35.59 3.69
1883 2682 5.168569 CAAGAATACTACTGCGAACAAGGA 58.831 41.667 0.00 0.00 0.00 3.36
1884 2683 4.929808 ACAAGAATACTACTGCGAACAAGG 59.070 41.667 0.00 0.00 0.00 3.61
1885 2684 6.807230 AGTACAAGAATACTACTGCGAACAAG 59.193 38.462 0.00 0.00 33.50 3.16
1886 2685 6.684686 AGTACAAGAATACTACTGCGAACAA 58.315 36.000 0.00 0.00 33.50 2.83
1887 2686 6.263516 AGTACAAGAATACTACTGCGAACA 57.736 37.500 0.00 0.00 33.50 3.18
1888 2687 8.853469 ATAAGTACAAGAATACTACTGCGAAC 57.147 34.615 0.00 0.00 34.18 3.95
1917 2716 8.454894 CGAGAGTATAGCTTTATAGAATGCAGA 58.545 37.037 10.20 0.00 38.01 4.26
1918 2717 7.700234 CCGAGAGTATAGCTTTATAGAATGCAG 59.300 40.741 10.20 0.00 38.01 4.41
1919 2718 7.393515 TCCGAGAGTATAGCTTTATAGAATGCA 59.606 37.037 10.20 0.00 38.01 3.96
1920 2719 7.763356 TCCGAGAGTATAGCTTTATAGAATGC 58.237 38.462 0.00 0.00 36.27 3.56
1947 2746 7.170658 TGCTGCTTATTGCGAATTTAAGTTTTT 59.829 29.630 0.00 0.00 46.63 1.94
1948 2747 6.644592 TGCTGCTTATTGCGAATTTAAGTTTT 59.355 30.769 0.00 0.00 46.63 2.43
1949 2748 6.155827 TGCTGCTTATTGCGAATTTAAGTTT 58.844 32.000 0.00 0.00 46.63 2.66
1950 2749 5.708948 TGCTGCTTATTGCGAATTTAAGTT 58.291 33.333 0.00 0.00 46.63 2.66
1951 2750 5.309323 TGCTGCTTATTGCGAATTTAAGT 57.691 34.783 0.00 0.00 46.63 2.24
1952 2751 6.912051 TGTATGCTGCTTATTGCGAATTTAAG 59.088 34.615 0.00 0.00 46.63 1.85
1953 2752 6.690957 GTGTATGCTGCTTATTGCGAATTTAA 59.309 34.615 0.00 0.00 46.63 1.52
1954 2753 6.038161 AGTGTATGCTGCTTATTGCGAATTTA 59.962 34.615 0.00 0.00 46.63 1.40
1955 2754 5.036737 GTGTATGCTGCTTATTGCGAATTT 58.963 37.500 0.00 0.00 46.63 1.82
1956 2755 4.336433 AGTGTATGCTGCTTATTGCGAATT 59.664 37.500 0.00 0.00 46.63 2.17
1957 2756 3.879295 AGTGTATGCTGCTTATTGCGAAT 59.121 39.130 0.00 0.00 46.63 3.34
1958 2757 3.063861 CAGTGTATGCTGCTTATTGCGAA 59.936 43.478 0.00 0.00 46.63 4.70
1959 2758 2.609002 CAGTGTATGCTGCTTATTGCGA 59.391 45.455 0.00 0.00 46.63 5.10
1960 2759 2.978013 CAGTGTATGCTGCTTATTGCG 58.022 47.619 0.00 0.00 46.63 4.85
1972 2771 5.865552 CCAAATTTCTCCTTTGCAGTGTATG 59.134 40.000 0.00 0.00 33.27 2.39
1973 2772 5.539955 ACCAAATTTCTCCTTTGCAGTGTAT 59.460 36.000 0.00 0.00 33.27 2.29
1974 2773 4.892934 ACCAAATTTCTCCTTTGCAGTGTA 59.107 37.500 0.00 0.00 33.27 2.90
1975 2774 3.706086 ACCAAATTTCTCCTTTGCAGTGT 59.294 39.130 0.00 0.00 33.27 3.55
1976 2775 4.053295 CACCAAATTTCTCCTTTGCAGTG 58.947 43.478 0.00 0.00 33.27 3.66
1977 2776 3.493176 GCACCAAATTTCTCCTTTGCAGT 60.493 43.478 0.00 0.00 33.27 4.40
1978 2777 3.062042 GCACCAAATTTCTCCTTTGCAG 58.938 45.455 0.00 0.00 33.27 4.41
1979 2778 2.699846 AGCACCAAATTTCTCCTTTGCA 59.300 40.909 0.00 0.00 33.27 4.08
1980 2779 3.391506 AGCACCAAATTTCTCCTTTGC 57.608 42.857 0.00 0.00 33.27 3.68
1981 2780 8.469200 TGAATATAGCACCAAATTTCTCCTTTG 58.531 33.333 0.00 0.00 34.17 2.77
1982 2781 8.593945 TGAATATAGCACCAAATTTCTCCTTT 57.406 30.769 0.00 0.00 0.00 3.11
1983 2782 8.773033 ATGAATATAGCACCAAATTTCTCCTT 57.227 30.769 0.00 0.00 0.00 3.36
1984 2783 9.866655 TTATGAATATAGCACCAAATTTCTCCT 57.133 29.630 0.00 0.00 0.00 3.69
1985 2784 9.899226 GTTATGAATATAGCACCAAATTTCTCC 57.101 33.333 0.00 0.00 0.00 3.71
1988 2787 9.683069 CCAGTTATGAATATAGCACCAAATTTC 57.317 33.333 0.00 0.00 0.00 2.17
1989 2788 8.143835 GCCAGTTATGAATATAGCACCAAATTT 58.856 33.333 0.00 0.00 0.00 1.82
1990 2789 7.506938 AGCCAGTTATGAATATAGCACCAAATT 59.493 33.333 0.00 0.00 0.00 1.82
1991 2790 7.006509 AGCCAGTTATGAATATAGCACCAAAT 58.993 34.615 0.00 0.00 0.00 2.32
1992 2791 6.364701 AGCCAGTTATGAATATAGCACCAAA 58.635 36.000 0.00 0.00 0.00 3.28
1993 2792 5.940617 AGCCAGTTATGAATATAGCACCAA 58.059 37.500 0.00 0.00 0.00 3.67
1994 2793 5.567037 AGCCAGTTATGAATATAGCACCA 57.433 39.130 0.00 0.00 0.00 4.17
1995 2794 5.335191 GCAAGCCAGTTATGAATATAGCACC 60.335 44.000 0.00 0.00 0.00 5.01
1996 2795 5.239306 TGCAAGCCAGTTATGAATATAGCAC 59.761 40.000 0.00 0.00 0.00 4.40
1997 2796 5.375773 TGCAAGCCAGTTATGAATATAGCA 58.624 37.500 0.00 0.00 0.00 3.49
1998 2797 5.947228 TGCAAGCCAGTTATGAATATAGC 57.053 39.130 0.00 0.00 0.00 2.97
1999 2798 6.376978 GCTTGCAAGCCAGTTATGAATATAG 58.623 40.000 36.21 2.46 46.20 1.31
2000 2799 6.317789 GCTTGCAAGCCAGTTATGAATATA 57.682 37.500 36.21 0.00 46.20 0.86
2001 2800 5.192327 GCTTGCAAGCCAGTTATGAATAT 57.808 39.130 36.21 0.00 46.20 1.28
2002 2801 4.637483 GCTTGCAAGCCAGTTATGAATA 57.363 40.909 36.21 0.00 46.20 1.75
2003 2802 3.515330 GCTTGCAAGCCAGTTATGAAT 57.485 42.857 36.21 0.00 46.20 2.57
2015 2814 1.884579 ACTTGAGACCATGCTTGCAAG 59.115 47.619 22.44 22.44 38.81 4.01
2016 2815 1.985473 ACTTGAGACCATGCTTGCAA 58.015 45.000 0.00 0.00 0.00 4.08
2017 2816 1.610038 CAACTTGAGACCATGCTTGCA 59.390 47.619 0.00 0.00 0.00 4.08
2018 2817 1.668047 GCAACTTGAGACCATGCTTGC 60.668 52.381 0.00 0.00 34.29 4.01
2019 2818 1.610038 TGCAACTTGAGACCATGCTTG 59.390 47.619 0.00 0.00 37.86 4.01
2020 2819 1.985473 TGCAACTTGAGACCATGCTT 58.015 45.000 0.00 0.00 37.86 3.91
2021 2820 1.985473 TTGCAACTTGAGACCATGCT 58.015 45.000 0.00 0.00 37.86 3.79
2022 2821 2.796593 GTTTTGCAACTTGAGACCATGC 59.203 45.455 0.00 0.00 37.52 4.06
2023 2822 4.044336 TGTTTTGCAACTTGAGACCATG 57.956 40.909 0.00 0.00 33.58 3.66
2024 2823 4.734398 TTGTTTTGCAACTTGAGACCAT 57.266 36.364 0.00 0.00 33.58 3.55
2035 2834 2.929960 TCGTGTTTCGTTGTTTTGCAA 58.070 38.095 0.00 0.00 40.80 4.08
2036 2835 2.613730 TCGTGTTTCGTTGTTTTGCA 57.386 40.000 0.00 0.00 40.80 4.08
2037 2836 4.493074 AATTCGTGTTTCGTTGTTTTGC 57.507 36.364 0.00 0.00 40.80 3.68
2038 2837 7.101781 CAGTTAATTCGTGTTTCGTTGTTTTG 58.898 34.615 0.00 0.00 40.80 2.44
2039 2838 6.251801 CCAGTTAATTCGTGTTTCGTTGTTTT 59.748 34.615 0.00 0.00 40.80 2.43
2040 2839 5.740099 CCAGTTAATTCGTGTTTCGTTGTTT 59.260 36.000 0.00 0.00 40.80 2.83
2041 2840 5.163733 ACCAGTTAATTCGTGTTTCGTTGTT 60.164 36.000 0.00 0.00 40.80 2.83
2042 2841 4.333372 ACCAGTTAATTCGTGTTTCGTTGT 59.667 37.500 0.00 0.00 40.80 3.32
2043 2842 4.839796 ACCAGTTAATTCGTGTTTCGTTG 58.160 39.130 0.00 0.00 40.80 4.10
2044 2843 5.295045 AGAACCAGTTAATTCGTGTTTCGTT 59.705 36.000 0.00 0.00 40.80 3.85
2045 2844 4.812626 AGAACCAGTTAATTCGTGTTTCGT 59.187 37.500 0.00 0.00 40.80 3.85
2046 2845 5.050634 TCAGAACCAGTTAATTCGTGTTTCG 60.051 40.000 0.00 0.00 41.41 3.46
2047 2846 6.295039 TCAGAACCAGTTAATTCGTGTTTC 57.705 37.500 0.00 0.00 0.00 2.78
2048 2847 6.687081 TTCAGAACCAGTTAATTCGTGTTT 57.313 33.333 0.00 0.00 0.00 2.83
2049 2848 6.877611 ATTCAGAACCAGTTAATTCGTGTT 57.122 33.333 0.00 0.00 0.00 3.32
2050 2849 7.159372 AGTATTCAGAACCAGTTAATTCGTGT 58.841 34.615 0.00 0.00 0.00 4.49
2051 2850 7.462856 CGAGTATTCAGAACCAGTTAATTCGTG 60.463 40.741 0.00 0.00 0.00 4.35
2052 2851 6.530534 CGAGTATTCAGAACCAGTTAATTCGT 59.469 38.462 0.00 0.00 0.00 3.85
2053 2852 6.530534 ACGAGTATTCAGAACCAGTTAATTCG 59.469 38.462 0.00 0.00 0.00 3.34
2054 2853 7.829378 ACGAGTATTCAGAACCAGTTAATTC 57.171 36.000 0.00 0.00 0.00 2.17
2055 2854 7.876068 TCAACGAGTATTCAGAACCAGTTAATT 59.124 33.333 0.00 0.00 0.00 1.40
2056 2855 7.331193 GTCAACGAGTATTCAGAACCAGTTAAT 59.669 37.037 0.00 0.00 0.00 1.40
2057 2856 6.643770 GTCAACGAGTATTCAGAACCAGTTAA 59.356 38.462 0.00 0.00 0.00 2.01
2058 2857 6.154445 GTCAACGAGTATTCAGAACCAGTTA 58.846 40.000 0.00 0.00 0.00 2.24
2059 2858 4.989168 GTCAACGAGTATTCAGAACCAGTT 59.011 41.667 0.00 0.00 0.00 3.16
2060 2859 4.038763 TGTCAACGAGTATTCAGAACCAGT 59.961 41.667 0.00 0.00 0.00 4.00
2061 2860 4.386049 GTGTCAACGAGTATTCAGAACCAG 59.614 45.833 0.00 0.00 0.00 4.00
2062 2861 4.202172 TGTGTCAACGAGTATTCAGAACCA 60.202 41.667 0.00 0.00 0.00 3.67
2063 2862 4.304110 TGTGTCAACGAGTATTCAGAACC 58.696 43.478 0.00 0.00 0.00 3.62
2064 2863 5.900339 TTGTGTCAACGAGTATTCAGAAC 57.100 39.130 0.00 0.00 0.00 3.01
2065 2864 8.771920 ATAATTGTGTCAACGAGTATTCAGAA 57.228 30.769 0.00 0.00 28.62 3.02
2066 2865 8.771920 AATAATTGTGTCAACGAGTATTCAGA 57.228 30.769 0.00 0.00 36.63 3.27
2069 2868 9.422196 GCTTAATAATTGTGTCAACGAGTATTC 57.578 33.333 2.92 0.00 39.22 1.75
2070 2869 8.941977 TGCTTAATAATTGTGTCAACGAGTATT 58.058 29.630 0.00 4.71 41.54 1.89
2071 2870 8.487313 TGCTTAATAATTGTGTCAACGAGTAT 57.513 30.769 0.00 0.00 33.37 2.12
2072 2871 7.892778 TGCTTAATAATTGTGTCAACGAGTA 57.107 32.000 0.00 0.00 0.00 2.59
2073 2872 6.795098 TGCTTAATAATTGTGTCAACGAGT 57.205 33.333 0.00 0.00 0.00 4.18
2074 2873 9.373750 CATATGCTTAATAATTGTGTCAACGAG 57.626 33.333 0.00 0.00 0.00 4.18
2075 2874 9.103861 TCATATGCTTAATAATTGTGTCAACGA 57.896 29.630 0.00 0.00 0.00 3.85
2076 2875 9.882996 ATCATATGCTTAATAATTGTGTCAACG 57.117 29.630 0.00 0.00 0.00 4.10
2098 2897 9.599866 TCTCACTAAACAATCGTAATTCATCAT 57.400 29.630 0.00 0.00 0.00 2.45
2099 2898 8.996024 TCTCACTAAACAATCGTAATTCATCA 57.004 30.769 0.00 0.00 0.00 3.07
2102 2901 8.218441 CGTTTCTCACTAAACAATCGTAATTCA 58.782 33.333 0.00 0.00 38.93 2.57
2103 2902 7.213891 GCGTTTCTCACTAAACAATCGTAATTC 59.786 37.037 0.00 0.00 38.93 2.17
2104 2903 7.013529 GCGTTTCTCACTAAACAATCGTAATT 58.986 34.615 0.00 0.00 38.93 1.40
2105 2904 6.367969 AGCGTTTCTCACTAAACAATCGTAAT 59.632 34.615 0.00 0.00 38.93 1.89
2106 2905 5.693104 AGCGTTTCTCACTAAACAATCGTAA 59.307 36.000 0.00 0.00 38.93 3.18
2107 2906 5.118050 CAGCGTTTCTCACTAAACAATCGTA 59.882 40.000 0.00 0.00 38.93 3.43
2108 2907 4.056050 AGCGTTTCTCACTAAACAATCGT 58.944 39.130 0.00 0.00 38.93 3.73
2109 2908 4.149922 TCAGCGTTTCTCACTAAACAATCG 59.850 41.667 0.00 0.00 38.93 3.34
2110 2909 5.591643 TCAGCGTTTCTCACTAAACAATC 57.408 39.130 0.00 0.00 38.93 2.67
2111 2910 6.560253 ATTCAGCGTTTCTCACTAAACAAT 57.440 33.333 0.00 0.00 38.93 2.71
2112 2911 7.411480 CGATATTCAGCGTTTCTCACTAAACAA 60.411 37.037 0.00 0.00 38.93 2.83
2113 2912 6.034577 CGATATTCAGCGTTTCTCACTAAACA 59.965 38.462 0.00 0.00 38.93 2.83
2114 2913 6.034683 ACGATATTCAGCGTTTCTCACTAAAC 59.965 38.462 0.00 0.00 46.33 2.01
2141 2940 4.212636 CGTTTGGGAGTTCAGTATTCGTTT 59.787 41.667 0.00 0.00 0.00 3.60
2156 2955 3.831651 AAATGGTGTCCGTTTGGGA 57.168 47.368 5.34 0.00 40.72 4.37
2160 2959 5.776173 TCATTTACAAATGGTGTCCGTTT 57.224 34.783 13.30 0.73 44.51 3.60
2161 2960 5.975693 ATCATTTACAAATGGTGTCCGTT 57.024 34.783 13.30 0.00 44.51 4.44
2168 2967 5.336372 CCCGTTGTCATCATTTACAAATGGT 60.336 40.000 13.30 4.91 44.51 3.55
2169 2968 5.101628 CCCGTTGTCATCATTTACAAATGG 58.898 41.667 13.30 1.74 44.51 3.16
2170 2969 5.708948 ACCCGTTGTCATCATTTACAAATG 58.291 37.500 8.14 8.14 45.49 2.32
2171 2970 5.975693 ACCCGTTGTCATCATTTACAAAT 57.024 34.783 0.00 0.00 37.35 2.32
2172 2971 5.776173 AACCCGTTGTCATCATTTACAAA 57.224 34.783 0.00 0.00 37.35 2.83
2173 2972 5.763698 TGTAACCCGTTGTCATCATTTACAA 59.236 36.000 0.00 0.00 33.35 2.41
2174 2973 5.306394 TGTAACCCGTTGTCATCATTTACA 58.694 37.500 0.00 0.00 0.00 2.41
2175 2974 5.866335 TGTAACCCGTTGTCATCATTTAC 57.134 39.130 0.00 0.00 0.00 2.01
2176 2975 7.175119 TCAAATGTAACCCGTTGTCATCATTTA 59.825 33.333 0.00 0.00 33.69 1.40
2177 2976 5.975693 AATGTAACCCGTTGTCATCATTT 57.024 34.783 0.00 0.00 0.00 2.32
2178 2977 5.475220 TCAAATGTAACCCGTTGTCATCATT 59.525 36.000 0.00 0.00 0.00 2.57
2179 2978 5.007034 TCAAATGTAACCCGTTGTCATCAT 58.993 37.500 0.00 0.00 0.00 2.45
2180 2979 4.390264 TCAAATGTAACCCGTTGTCATCA 58.610 39.130 0.00 0.00 0.00 3.07
2181 2980 5.365403 TTCAAATGTAACCCGTTGTCATC 57.635 39.130 0.00 0.00 0.00 2.92
2182 2981 5.768317 CTTTCAAATGTAACCCGTTGTCAT 58.232 37.500 0.00 0.00 0.00 3.06
2183 2982 4.498345 GCTTTCAAATGTAACCCGTTGTCA 60.498 41.667 0.00 0.00 0.00 3.58
2184 2983 3.978855 GCTTTCAAATGTAACCCGTTGTC 59.021 43.478 0.00 0.00 0.00 3.18
2185 2984 3.634910 AGCTTTCAAATGTAACCCGTTGT 59.365 39.130 0.00 0.00 0.00 3.32
2186 2985 4.237349 AGCTTTCAAATGTAACCCGTTG 57.763 40.909 0.00 0.00 0.00 4.10
2187 2986 5.310451 TCTAGCTTTCAAATGTAACCCGTT 58.690 37.500 0.00 0.00 0.00 4.44
2188 2987 4.901868 TCTAGCTTTCAAATGTAACCCGT 58.098 39.130 0.00 0.00 0.00 5.28
2189 2988 5.180492 TGTTCTAGCTTTCAAATGTAACCCG 59.820 40.000 0.00 0.00 0.00 5.28
2190 2989 6.569179 TGTTCTAGCTTTCAAATGTAACCC 57.431 37.500 0.00 0.00 0.00 4.11
2191 2990 6.961554 CGATGTTCTAGCTTTCAAATGTAACC 59.038 38.462 0.00 0.00 0.00 2.85
2205 3004 4.212004 TGCTCATTATTGCGATGTTCTAGC 59.788 41.667 0.00 0.45 0.00 3.42
2206 3005 5.333645 GGTGCTCATTATTGCGATGTTCTAG 60.334 44.000 0.00 0.00 0.00 2.43
2230 3029 2.360483 TGTGGTTGGTGTTATGTTGCTG 59.640 45.455 0.00 0.00 0.00 4.41
2235 3034 1.953686 GCAGTGTGGTTGGTGTTATGT 59.046 47.619 0.00 0.00 0.00 2.29
2237 3036 2.356665 TGCAGTGTGGTTGGTGTTAT 57.643 45.000 0.00 0.00 0.00 1.89
2273 3073 9.612620 GCCAGTTATTAATATCATTTGTAGCAC 57.387 33.333 6.37 0.00 0.00 4.40
2279 3079 9.531942 TTGCAAGCCAGTTATTAATATCATTTG 57.468 29.630 0.00 5.97 0.00 2.32
2324 3126 9.965824 AACCAGTTAATTCTTGTTTCAGTATTG 57.034 29.630 0.00 0.00 0.00 1.90
2429 3231 9.520204 GCACTTGTGTCATATTTTGCTATTATT 57.480 29.630 2.61 0.00 0.00 1.40
2430 3232 7.857389 CGCACTTGTGTCATATTTTGCTATTAT 59.143 33.333 2.61 0.00 0.00 1.28
2431 3233 7.186128 CGCACTTGTGTCATATTTTGCTATTA 58.814 34.615 2.61 0.00 0.00 0.98
2432 3234 6.029607 CGCACTTGTGTCATATTTTGCTATT 58.970 36.000 2.61 0.00 0.00 1.73
2617 3419 1.135960 AATAGCTTCTCCTGAGGGGC 58.864 55.000 0.00 0.00 34.39 5.80
2670 3472 9.685276 TGAGGTGTTATTCATCAGATAAATGTT 57.315 29.630 0.00 0.00 0.00 2.71
2671 3473 9.685276 TTGAGGTGTTATTCATCAGATAAATGT 57.315 29.630 0.00 0.00 0.00 2.71
2680 3482 4.661222 TGCCTTTGAGGTGTTATTCATCA 58.339 39.130 0.00 0.00 37.80 3.07
2681 3483 5.585390 CATGCCTTTGAGGTGTTATTCATC 58.415 41.667 0.00 0.00 37.80 2.92
2691 3493 0.964358 GAGCTGCATGCCTTTGAGGT 60.964 55.000 16.68 10.96 44.23 3.85
2693 3495 2.563297 TGAGCTGCATGCCTTTGAG 58.437 52.632 16.68 6.41 44.23 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.