>input_sequence_70978
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-----------------------------------------------------------------------ATGTGTGGC
GGCGCGATCATCTCCGACTTCACCCCGGAGCGCGACCACCGCGGCGGCAGCAAGCGCAGCCTCTGCACCGCCGACTTCTG
GCCGCATGC------------CGCCGCCGCGTTCGACGACCCTACCGGCCACCACGACTTCTACCCAGCCGACCTGACCG
GCGCCTGCTCGTTCCCTCCCCAGCACCAAGGTACGTCAGTCAGCT---ATTACCATCAGGCTCCACTA-CAGGCCAAGTA
CTTTGCATTGC-----ATCCGTGCCCGAGCGTACCGTGACC-TTTTCTGCCGGCCGGCGTTTGTACGTGCAGCAGCTGCG
GCAGGGGAGGAGCCGAGCAGGAAGCGGGAGCGCAAGACGATGTACCGCGGCATCCGGCGGCGGCCCTGGGGCAAGTGGGC
GGCGGAGATCCGCGACCCGGCCAAGGGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGGCGCCGCCCGCGCCT
ACGACCGCGCCGCCCGCCGCATCCGCGGGACCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCGCTCGACCTGGAC
GACTACGACGTCGCCA------------ACGTCGCCGGCTTCTTCCACCAGCCGTCGTACATGGCCGATGCCGCCGCGCC
GGCGACGGAGGTGGCGTACGCGCACCAGCTGCCCCAGCAGGACGAGCCCGGGATGGAGCTCTGGAACTTTGACAACATCA
ACACGCAAGTGAT----------ATAG-----------------------------------------------------
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>chr2D_1_TraesCS2D01G110000
ATGCGGACTGTAGAGGGAGGGCGGTTTGTGGGCCTCACTGGAACGCATGGCATGCGTGGAGGCGATATTTGACCAAGTTC
ATACAAAAAATTATTGACATTCTTAATGCAACATTACTATCATTAGATCCATTATGGAATATATTTTTATATTATACGTA
TTTATTAGGTATTGTAGATGTGGATATTTTCCAAAACAATTTTCCCTATTTTTTTAAGAAGTTTGACAT-----------
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-----------------------CAAACCTTTCTACCACGTAGAGTAAAAGGAAAAGAGACAGTACTGAGTTGTACATAA
TGCTCGCTTGTTGAAGAGAATGTGCATGACTTGCTCGAAGGACAGCGACTATAGCACGTGCAATTAAGCGATGCGACGCG
AGCTTCGCCGTCCGGTCAGACGGACTCCAGGTCAGACAA-------------------------TGACAGGCCACGCCGG
CATCCGGTGGGCCGCCGCCGGGTTATTACGCATTTCATCCGGCAGGACAGCAGTGCATCGCC---ACTGTTCACCAGCGC
ATTACATCGCTGCCAACACGCATTGCGCGGCTGCGGCTTCGCACAGGGCTTCCTGAAAGCAGAG----------GCGGCG
GCCACGCCGGACCAG--------ACCAGACCACGCGTCTGCGGTG---ATGAAACCCGGGGGTCCGAGACTGTCCTAGGC
TCGTAGGCCAGGGAGTTGTTAATTCTATCTGAAGTAAAGTAAAGGCGGCATGGTTAGCAGATGATT--------------
--GGGATCACGCGCACGCGACGCACCGTCTCACGGTCACCGCCCGGGGAAAAACAGCGGCGCGCGGCCGGCTGGCGTCCA
CCGATTCGCCCGTCCGAGGAAGGAAGCTGCC--------CCGCCGTCACGTTCCACCTCCGAGGAATTCACTCGCGCGGC
TCCTCTACTTAAGCGCGCGCCGCACACGGCCTC--TCACCTCACCTCCTCTGCCACTGCCACCCCATCGCCACCTTTCTT
CATAGGTTCCTATACTA-CCGAGCTCCACAG-CAGCGCTATCCTCTGTCTACTCACTAAGCAGCGTACAACATGTGTGGC
GGCGCGATCATCTCCGACTTCACCCCGGAGCGCGACCACCGCGGCGGCAGCAAGCGCAGCCTCTGCACCGCCGACTTCTG
GCCGCATGC------------CGCCGCCGCGTTCGACGACCCTACCGGCCACCACGACTTCTACCCAGCCGACCTGACCG
GCGCCTGCTCGTTCCCTCCCCAGCACCAAGGTACGTCAGTCAGCT---ATTACCATCAGGCTCCACTA-CAGGCCAAGTA
CTTTGCATTGC-----ATCCGTGCCCGAGCGTACCGTGACC-TTTTCTGCCGGCCGGCGTTTGTACGTGCAGCAGCTGCG
GCAGGGGAGGAGCCGAGCAGGAAGCGGGAGCGCAAGACGATGTACCGCGGCATCCGGCGGCGGCCCTGGGGCAAGTGGGC
GGCGGAGATCCGCGACCCGGCCAAGGGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCGCCGAGGGCGCCGCCCGCGCCT
ACGACCGCGCCGCCCGCCGCATCCGCGGGACCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCGCTCGACCTGGAC
GACTACGACGTCGCCA------------ACGTCGCCGGCTTCTTCCACCAGCCGTCGTACATGGCCGATGCCGCCGCGCC
GGCGACGGAGGTGGCGTACGCGCACCAGCTGCCCCAGCAGGACGAGCCCGGGATGGAGCTCTGGAACTTTGACAACATCA
ACACGCAAGTGAT----------ATAGAAACTGGTCTCTTCTGCATGCATGTAATATTGCCTTTACCAAATTATTA---A
GCATATGATGAATTACGATTGTTTAGTGAGAAACTTTGAATATCGTCAAACGAATATTTTACTCACTTATGGGTCGTACT
GCTATAGTTTTCAAATGTAGCACAAACACCACCAGCCACGCTCCTTGTTCGCAGTAGTATTCTTGTACTTATAATTCTGC
ATTCTATAAAGCTATACTCTCGGAAAAAAACTTAAATTCGCAATAAGCAGCATACACTGCAAAGGAGAAATTTGGTGCTA
TATTCATAACTGGCTTGCAAGCATGGTCTCAAGTTGCAAAACAACGAAACACGAATTAACTGGTTCTGAATACTCGTTGA
CACAATTATTAAGCATATGATGAATTACGATTGTTTAGTGAGAAACGCTGAATATCGTCAAACGAATACTGAACTCCCAA
ACGGACACCATTTGTAAATGATGACAACGGGTTACATTTGAAAGCTAGAACATCGCAATAATGAGCACCAGCAACATAAC
ACCAACCACACTGCAA-CGGAGAGAAATTTTGGTGCTACAAATGATATTAATAACTGGCTTGCAAGCATGGTCTC--AAG
TTGCACAATACTGAAACAAGAATTAACTGGTTCTGAATACTCATTGACACAAGACACTGACATCTAAAGCGGTATGATTC
TGGTACCCAAAAAGGTGATGATGAACCGATAATAATAGCAAAATATGACACAAGTGCGCCAGAAATTCCACAGCTTAAAC
CTTGAAGCCCCTGCTGTTCCTCCTTCCTCTTGCCTTCTCGAATTTCCTGCCCTTTGAGCGGACATATGGCTTGGTGTGGC
TGTGTGGCACTCCTGGAGCTTTGCCAAAGTGCCTAACAGCTTCCCTGGCGTTCTTGGGGCCCCTCAGGAGAAGCTATTAA
GAAAATGTAATTTGTTAAAATGGTTGTCTGTAACATTTATCTGATGAATAACACCTCAAAGGCATGCAGCTCA
>chr2B_225
GCTTGCTGAAGAAAATGTGAATAATTTGCTCCAAGGACAGCGAGTATAGCACGTGCAATTAAGCGATGCGATGCGACGCG
AGCCTCGCCGTCAAGTCAGACGGACTCCAGGTCAGACAAAGGGCGAAGACGACCGTCCACGGGATGACAGGCCACGCCGG
CATCCGGTGGGCCGCCGCCGGGTTACGCGTTCGATCCGGCAGGACAGCAGTGCATCACCACTGCTCACCGGCGCACGCAT
CGCTGCCAACACGCATGGCGCGGCGGCGGCTTCGCACAGGGCTTGCCGCCCTTGTGAACTCGATGGAGGCCTCCAGTGCG
CAGACCTCCACCGTGCAAGCCGCGGCCAGCACCATCGGCGATCGCTAAGGCCGGCGAGGAGGAAGGACCCCGGGTGGAAG
CACCCCGGGGGGGATCCTGGATATCGCCTCCATGCGTGGCCTTGCGATGCTGAGGCGGGGAGGGTTGGATCGGAATTCCC
TCCACCGCGCAGCCTGCGCCGGATCTGGCGAGTCCGCCTCCTGGATCGCCCAGAAGAGGAACTCCACATCCGGTGCGCCA
TCGTCGCCGGTGAATCTCGCGTATTCGTAGTACCTGGCGTGTTGCAGGATGCTCTCAAAGATCTCCGACCACATCGAGCG
GTCCGGGAATCGCTCCCGCACCACACGCTCCATCTCCTGGTACGCCTCCGGTGAGTTCGCATCGACTGGAGGAGACAGAA
GCCGCAACGGCACCGCCACCCACGTCGCCGGCTGAAGGCGACGGATCTGAGCACCCCGGCGGCGGGGTGCTGTCATCCAG
TCCAGTGGCGAGAGGGGAAGTGGATAAGCTCGGGGGAGCGCATCAACGGTGGTGGAGAGGGAGGTAGGTGGGGGAGGGGG
AAAATCGCCTCTTCTAAGGACTTCAAACAATTCTAATACGCTGAGAAAAAAGAAGAGACGG-GTACTGAGTTGTACATAA
TGGTTGCTTGCTGAAGAAAATGTGCATAACTTGCTCGAAGGACAGCGAGTATAGCACGTGCAATTAAGCGATGCGACGCG
AGCTTAGCCGTCAGGTCAGACGGACTCCGAGTCAGACAAAGGGCGAAGACGAGCGTCCACGGGATGACAGGCCACGCCGG
CATCCGGTGGGCCGCCGCCGGGTTA---CGCGTTCGATCCGGCAGGACAGCAGTGCATCACC---ACTGCTCACCGGCGC
ACG-CATCGCTGCCAACACGCATGGCGCGGCGGCGGCTTCGCACAGGGCTTCCTGAAAGCAGAGCAAAGCAGAGGCGGCG
GCCACGCCAGACCAG--------ATCAGACCACGCGTCTGCGG------TGAAACCCGGGGGTCCGAGACTGTCGTAGGC
TCGTAGGCCAGCGAGTTGTTAATTCTATCTGAAGTAAAG-----GCGGCATGGTTAGCAGATGATT--------------
--GGGATCACGCGCACGCGACGCACCGTCTCACGGTCACCGCCCGAGGAAAAACAGCGGCGCC--------CGGCGTCCA
CCGGTTCGCCCGTCCGAGGAAGGAAGCTGCGCC-GACGGCCGCCGTCACGTTCCACCCCCGAGGAATTCACTCGCGCGGC
TCCTCTACTTAAGCGCGCGTCGCACACGACCTC--TCACCTCACCTCCTCTGCCAC------CCCAGCACCATCTTTCTT
CATAAGTTTCTAGTACCGCCGAGCTCCACAT-CAGCGCTATCCTCTATCTACTCACTAAACAGCGTACATCATGTGTGGC
GGCGCGATCATCTCCGACTTCACCCCGGAGCGCGACCACCGCGGCGGCAGCAAGCGGGGCCTCTGCACCGCTGACTTCTG
GCCGCATGC------------CG---CCGCGTTCGACGACCCTACCGACCACCACGACTTCTACCCCGACGAGCTGACCG
GCGCCCGCTCGTTCCCTCCCCAGCACCGAGGTACGTCAGTCAGCTGCTATTACCATCAGGTTCTACCA-CAGGCCAAGTA
CTTTGCATTGCATCTG---TGTGCCCGAGCGTACCGTGACCATTTTCTGCCGGCCGGCGTTTGTACGTGCAGC------G
GCAGAGGAGGAGCCGAGCAGGAAGCGGGAGCGCAAGACGATGTACCGCGGCATCCGGCGGCGACCGTGGGGCAAGTGGGC
GGCGGAGATCCGCGACCCGGCCAAGGGCGCGCGCGTCTGGCTCGGCACCTTCGCCACCCCCGAGGGCGCCGCGCGCGCCT
ACGACCGCGCCGCCCGCCGCATCCGCGGGACCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCCCTCGACCTCGAC
GACTACGACGTTGCCAACGGCGGCTACAACGTCGCCGGCTTCTTCCACCAGCCGTCCTACATGGCCGAAGCCACCGCGCC
GGTGCCGGAGGCGGCGTACGCTCACCAGCTGCCGCATCATGACGAGCCCGGGATGGAGCTCTGGAACTTTGACAACATCA
ACACCCAAGTGCCTATGTGATAGATAGTAACTGGTCTCTTCTGCTTGCATGTAATATTGCCTTTACCTACTTATTATTAA
GCTTCTGATGAATTATGATTTGTTTTTGACGGCCACTGTCATCGGATCTGATG-CCAGCCATCCTCGTGGCCAA------
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---------------------------------TTTAGTGAGAATCGCCAAAAATCGTCTAACGGATACTGAAAAT----
------------------------------GTTACATTTGAAAAGTAGAACATCGCAATAATGAGCACAAGCAGCGTAAC
ACCAACCACAGTGCCAACGGAGACAACTTCTGATACTAGAAATGATATTCATAACTGGCTTGCAAGCATGGTCTCTCAAG
TTGCAAAATGATGAAACACAAATTAACTGGTTCTGAATACTCGTTGACACAAGACACTGACATCTAAAGCGGTAATATTC
TGGTATCCAAAAAGATGACGATAAACCGAAG---ATAGCAAAATATGACACAAGTGCGCCAGAAATTCCACATCTTAGAC
CTTGAATCCCCTGCTGTTCCTCCTTCCTCTCGCCTTCTCGAATTTCCTGCCCTTTGAGCGGACATATGGCTTGGTGTGGC
TGTGTGGCACTCCTGGAGCTTTGCCAAAGTGCCTAACAGCTTCCCTGGCGTTCTTGGGACCCCTCAGGAGAAGCTATTAA
GAAAATGTAATTTGTTAAAATGGTTTGTC--------------------------------------------
>chr2A_274
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-------------------------------------------------------------------GAGTAGTACATAA
CGCCTGCTTGCTGAAGAAAATGCGCATAACTTGCTCGAATGATAACGACGATATCACGTGCAATTAAGCGATGCGACGCG
AGCTTAGCCGAA--GTCAGACGGACTCCGGGTCAGACAAAGGTCCCGATGCATAACCCGTCGACGGCCG--------CGG
CATCCGGTGGGCCGCCGTCGGGTTATTACGCATCCCATTCGGCAGGACAACAGTGCATTACCCAGACTGTTCAGCAGCGC
ACG-CATCGCTGCCAACACGCATGGCGCGGCTGCGGCTCCGCACAGGGCTTCCTGAAAGCAGAG----------GCGGCG
GCCACGGCAGACCAGACCAGAGTACCAGACCACGCGGCTGCGATGAAAATGAAACCCGGGGGTCCGAGACTGTCGTAGGC
TCGTAGGCCAGGGAGTTGTTAATTCTATCTGAACTAAAG-----GCGGCACGGTGAGCAGATGATCTCGGGCCCGGTCGG
CCGGGATCACGCGCACGCGACGCACCGTCTCACGGTCACCACCCGAGC-AAAACAGCGGCGCGCGGCGATGCGGCGTCCA
CCGATTCGCCCGTCCGAGGAAGCTGCCCCGACGGGACGGCCGCCGTCACGTTCCACCTCCGAGGAATTCACTCGCTCGGC
TCCTCTACTTAAGCGCGCGCCGCACACGACTCACATCACCTCACCTCTCGCCCCACTGCCACAGCAGCGCCACCTTTCTT
CTACAGAACTCGATCGTCTCCTACACCAGATCCAGCGCTCTCCTCTACTTGCTCTATAAGCAGCATACACCATGTGTGGC
GGCGCGATCATCTCCGACTTCATCCCGGAGCGCGACCACCGCGGCGGGAGCAAGCGGAGCCTCTGCACCGCCGACTTCTG
GCCAAATGCGGCCGGCGCCGGCG---CCGCGTTCGACGACCCTACCGGCCACCACGACTTCTACCCAGCCGACCTGACCG
GCGCCGGCGCCTTCACGCCTGAGCACCAAGGTA-------------------CCATCACGTTCTAGCATCACGCCAAGCA
CTTGCTCCTACGTACTATCTGTGCCCGAACGTACCGTGAAAACCTTCTGCCTTCCGGCGTTCGTGCGTGCG-----TGCA
GCGGAGGAGGAGCCGAGCAGGAAGCGGGAGCGCAAGACGATGTACCGCGGCATCCGGCGGCGGCCGTGGGGCAAGTGGGC
GGCGGAGATCCGCGACCCGGCCAAGGGGGCGCGCGTCTGGCTCGGCACCTTCGCCACCCCCGAGGGCGCCGCGCGCGCCT
ACGACCGCGCCGCCCGCCGCATCCGCGGGACCAAGGCCAAGGTCAACTTCCCCAACGAGGACCCGCCCCTCGACCTCGAC
GACTACGACGTCGC------------CAACGTGGCCGGCTTCATCCACCAGCCGTCGTACATGGC---------------
---GCCAGAGGTGGCGTACGCGCACCAGCTGCCGCAGCAGGACGAGCCCGGGATGGAGCTCTGGAACTTTGGCAACATCA
ACGCTCAAGTGCCTATGTGATAGATAGAAACTGTTCGTTTCTTCTA-CATGTAATATTGCTTTTACCTAATTATTATTGT
GCTTATGATGAATTATGATCTGCTTTTGACGGCCACTGTCATCGGATCTTGATACCAGCCATCCTCGTGGCCAA------
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---------------------------------TTTAGTGAGAATCGCCAAATATCATCTAACGAACACTGAAAA-----
------------------------------GTTACATTTGAAAAGTAG-----------AATGAGCACAAGCAGCCTAAC
ACCAACGACACTGCAAACGGAGACAACTTCTGATACTAGAAATGATATTCATAACTGGATTGCAAGCATGGTCTC--AAG
TTGCAAAATACTGAAACAAGAATGAACTGGTTCTGAATACTCATCGACACAAGACTCTGACATCTAAAGCAGTATGATTC
TGGTACCCAAAAAAGTGAAGATTGACCGA------TAACAGCAAATGTGACAAGGGTGCCGAAAACTCCACGGCTTAAAC
CTTGAAGCCCCTGCTGTTCCTCCTTCCTCTTGCCTTCTCGAATTTCCTGCCCTTGGAGCGGACATATGGCTTGGTGTGGC
TGTGTGGCACTCCTGGAGCCTTGCCAAAGTGCCTAACAGCCTCCCTGGCGTTCTTGGGACCCCTCAGGAGAAGCTATTAA
GAAAATGTAAACTGTTAAAATGGTTGTCTATGGCATTTATCC-ATGAATAACGCTTCAAAAGCATGCAGCTCA
>SNPs
SSSS-SSSSSS-S-SS-S-SSSSS----SSSSSSSS--S-SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSS-S-SSSS
-SS-SSSSSS-S-SSSSSSSSSSSSSSSSSSSSSS--S-SSSSSSS-SS-SSSSSSSS-SSSSS-SSS-SSSS-SS-SSS
SS-SSSSS-SSSS-SS-SS-S-SSSSSSS-S-S-SS-SSSSSSS-SSSSS-SSS-S-SS-S-SSSSSSS-----------
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----------------------------SS-----SS---SS---S----S---S---SSSS------------------
----S-----S------S---------S----------------------------------------------------
-----S------S---------------S---------------------------------------------------
----------------------------------S------------------------S--------------------
-SSS-------------------S--------------------------------------------------------
--------S-----------------------------------------------------------------S-----
---------------------------------------SSSSS------------------------------------
---------------------------------------------S---------------------SSSSS--------
------------------------------S-------------------------------------------------
----------------------------S-------------------------------------S-------------
----S-------SS-SS-------------S---------------S----------------------S----------
--------------------------------------------------------S-----------------------
-----------------------SSS------------------------------------------------------
-----S------------------------------------------------------S--S--S-------------
-------------------S-----------------------------------------------------SSS----
----S------------------------------------------------------------S--------------
----------------------------------------------------------S-------------S-------
-------------------------------------------------------------------S--------S---
--------------------------------------------------------------------S---S-------
--S-S----------------------------S----------------------------------------------
----S------SS-------------------------------S----------------------S------------
--S------------S----SS--SS---SSSS-SS--SSSSSS-SSSSSSSS-SSSSSS-SS-S-S-SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---SS---------S-------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-----------------------S----S-S----
-----------------------S--S--S--S-S---S----------S------------------------------
-----S--------------------------------------------------------------------------
------------------S---S------SSSSS----------------------------------------------
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----------------------------------------------------------S---------------------
-----------------------------S-SS--------SS---------S-S-----S------------
>forward_72
----------------------------------------------------TGCGTGGAGGCGATATTTGA--------
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>reverse_2657
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----------------GTAGCACAAACACCACCAGC--------------------------------------------
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