Multiple sequence alignment - TraesCS2D01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G102400 chr2D 100.000 2779 0 0 1 2779 55257482 55254704 0.000000e+00 5132.0
1 TraesCS2D01G102400 chr2D 88.770 1211 70 32 1304 2477 55236930 55235749 0.000000e+00 1423.0
2 TraesCS2D01G102400 chr2D 86.712 1332 85 39 1 1271 55238412 55237112 0.000000e+00 1395.0
3 TraesCS2D01G102400 chr2D 100.000 516 0 0 2953 3468 55254530 55254015 0.000000e+00 953.0
4 TraesCS2D01G102400 chr2B 95.110 1268 44 2 1272 2521 87411294 87410027 0.000000e+00 1982.0
5 TraesCS2D01G102400 chr2B 89.383 1328 59 25 1 1271 87412729 87411427 0.000000e+00 1596.0
6 TraesCS2D01G102400 chr2A 91.802 1232 66 13 1272 2475 56101816 56100592 0.000000e+00 1683.0
7 TraesCS2D01G102400 chr2A 89.248 1237 88 17 1272 2477 55967771 55966549 0.000000e+00 1506.0
8 TraesCS2D01G102400 chr2A 85.821 1340 101 37 1 1271 55969223 55967904 0.000000e+00 1339.0
9 TraesCS2D01G102400 chr2A 84.798 1013 72 43 226 1209 56102965 56102006 0.000000e+00 942.0
10 TraesCS2D01G102400 chr2A 89.091 55 5 1 2708 2761 159068801 159068747 2.230000e-07 67.6
11 TraesCS2D01G102400 chr6B 80.501 359 40 20 2993 3346 643935268 643935601 7.430000e-62 248.0
12 TraesCS2D01G102400 chr5D 84.146 82 11 2 2624 2704 307517711 307517791 1.030000e-10 78.7
13 TraesCS2D01G102400 chr5D 89.362 47 2 3 2644 2689 67589363 67589319 4.840000e-04 56.5
14 TraesCS2D01G102400 chr4A 88.525 61 6 1 2703 2762 647035556 647035496 4.800000e-09 73.1
15 TraesCS2D01G102400 chr6D 82.716 81 12 2 2625 2704 299197126 299197205 1.730000e-08 71.3
16 TraesCS2D01G102400 chr5A 87.097 62 6 2 2644 2704 296307123 296307183 6.210000e-08 69.4
17 TraesCS2D01G102400 chr1D 87.931 58 6 1 2644 2700 125746762 125746705 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G102400 chr2D 55254015 55257482 3467 True 3042.5 5132 100.0000 1 3468 2 chr2D.!!$R2 3467
1 TraesCS2D01G102400 chr2D 55235749 55238412 2663 True 1409.0 1423 87.7410 1 2477 2 chr2D.!!$R1 2476
2 TraesCS2D01G102400 chr2B 87410027 87412729 2702 True 1789.0 1982 92.2465 1 2521 2 chr2B.!!$R1 2520
3 TraesCS2D01G102400 chr2A 55966549 55969223 2674 True 1422.5 1506 87.5345 1 2477 2 chr2A.!!$R2 2476
4 TraesCS2D01G102400 chr2A 56100592 56102965 2373 True 1312.5 1683 88.3000 226 2475 2 chr2A.!!$R3 2249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 492 0.179100 CATGTGTACGCAGCCTAGCT 60.179 55.000 15.35 0.0 40.77 3.32 F
420 494 0.738975 TGTGTACGCAGCCTAGCTAG 59.261 55.000 14.20 14.2 36.40 3.42 F
1182 1328 1.001641 GCCATGGCAGAGAAGGTGT 60.002 57.895 32.08 0.0 41.49 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1399 0.252197 ACTACTCCACCCGCCAAATC 59.748 55.0 0.0 0.0 0.0 2.17 R
2249 2624 0.390124 AAACAACGTGCGGAGAGGTA 59.610 50.0 0.0 0.0 0.0 3.08 R
3080 3460 0.034896 GCCTCCCACTCAGAACGAAA 59.965 55.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 75 4.314440 GACACCACCTCGGCTGCA 62.314 66.667 0.50 0.00 39.03 4.41
138 150 3.487202 CCACCATCGTTCGCCGTG 61.487 66.667 0.00 0.00 37.94 4.94
307 368 2.690653 TTTGCAGTACCTTGCCGCCT 62.691 55.000 4.79 0.00 43.43 5.52
418 492 0.179100 CATGTGTACGCAGCCTAGCT 60.179 55.000 15.35 0.00 40.77 3.32
420 494 0.738975 TGTGTACGCAGCCTAGCTAG 59.261 55.000 14.20 14.20 36.40 3.42
604 712 2.267642 CCGGTGCGGGAAATGAGA 59.732 61.111 0.00 0.00 44.15 3.27
877 990 8.579850 TTGTTCTTTCTTGGAGTGCAATATAT 57.420 30.769 0.00 0.00 0.00 0.86
1090 1228 8.265764 GCCGTAATATATTTCTTAGAATCCCCT 58.734 37.037 2.68 0.00 0.00 4.79
1182 1328 1.001641 GCCATGGCAGAGAAGGTGT 60.002 57.895 32.08 0.00 41.49 4.16
1183 1329 1.310933 GCCATGGCAGAGAAGGTGTG 61.311 60.000 32.08 0.00 41.49 3.82
1241 1399 2.258897 TGCGTGCATGCATGGTTG 59.741 55.556 34.64 18.78 40.62 3.77
1249 1407 1.282817 CATGCATGGTTGATTTGGCG 58.717 50.000 19.40 0.00 0.00 5.69
1254 1412 1.257055 ATGGTTGATTTGGCGGGTGG 61.257 55.000 0.00 0.00 0.00 4.61
1322 1634 7.599630 TGTCAAATTAACCCTGTAATACGAC 57.400 36.000 0.00 0.00 31.56 4.34
1371 1683 5.484173 TGACTTCGATGCAATTAACATCC 57.516 39.130 12.62 2.67 40.70 3.51
1397 1709 4.262164 GGATCAGAGAAGGAGAAGATCAGC 60.262 50.000 0.00 0.00 34.94 4.26
1421 1733 4.513692 ACCATCAATTTCGACACGAAGAAA 59.486 37.500 6.68 0.00 46.43 2.52
1547 1859 2.273449 CCCGATGCCAAGAAGCCT 59.727 61.111 0.00 0.00 0.00 4.58
1578 1890 3.713650 CGGAGGAGAAGAAGCCCA 58.286 61.111 0.00 0.00 0.00 5.36
1590 1902 2.343625 AGAAGCCCAAGGAGAAGAAGT 58.656 47.619 0.00 0.00 0.00 3.01
1709 2030 2.202623 CCCGACGAGAAGAAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
1751 2072 3.077907 CCGAAGCCCAAGGAGGAA 58.922 61.111 0.00 0.00 41.22 3.36
1826 2156 3.390521 CTCTGCTACCCGTGGCCA 61.391 66.667 0.00 0.00 36.12 5.36
2180 2555 3.285484 GTTCATCTACGAGGAGTACCCA 58.715 50.000 0.00 0.00 37.41 4.51
2249 2624 2.488355 GCATGCATGCGCTGTTCT 59.512 55.556 33.99 0.00 44.67 3.01
2372 2749 1.291877 GAAGGTGTAGCTGCCACGTG 61.292 60.000 9.08 9.08 33.56 4.49
2478 2858 7.772332 AGTTCGGAAATGCTAGTATTTGTAG 57.228 36.000 21.58 12.74 30.78 2.74
2484 2864 7.054751 GGAAATGCTAGTATTTGTAGAGGGTT 58.945 38.462 21.58 0.00 30.78 4.11
2487 2867 5.657474 TGCTAGTATTTGTAGAGGGTTTCG 58.343 41.667 0.00 0.00 0.00 3.46
2488 2868 5.048507 GCTAGTATTTGTAGAGGGTTTCGG 58.951 45.833 0.00 0.00 0.00 4.30
2512 2892 7.369607 GGCATACAAAAATTCAAAAGGCAAAT 58.630 30.769 0.00 0.00 0.00 2.32
2516 2896 7.082700 ACAAAAATTCAAAAGGCAAATTCGT 57.917 28.000 0.00 0.00 0.00 3.85
2521 2901 2.955660 TCAAAAGGCAAATTCGTCACCT 59.044 40.909 0.00 0.00 0.00 4.00
2522 2902 4.138290 TCAAAAGGCAAATTCGTCACCTA 58.862 39.130 0.00 0.00 0.00 3.08
2523 2903 4.215399 TCAAAAGGCAAATTCGTCACCTAG 59.785 41.667 0.00 0.00 0.00 3.02
2524 2904 3.418684 AAGGCAAATTCGTCACCTAGT 57.581 42.857 0.00 0.00 0.00 2.57
2525 2905 3.418684 AGGCAAATTCGTCACCTAGTT 57.581 42.857 0.00 0.00 0.00 2.24
2526 2906 4.546829 AGGCAAATTCGTCACCTAGTTA 57.453 40.909 0.00 0.00 0.00 2.24
2527 2907 4.504858 AGGCAAATTCGTCACCTAGTTAG 58.495 43.478 0.00 0.00 0.00 2.34
2540 2920 4.859629 CCTAGTTAGGCAAATTCGTCAC 57.140 45.455 0.00 0.00 36.53 3.67
2541 2921 3.621715 CCTAGTTAGGCAAATTCGTCACC 59.378 47.826 0.00 0.00 36.53 4.02
2542 2922 3.418684 AGTTAGGCAAATTCGTCACCT 57.581 42.857 0.00 0.00 34.42 4.00
2543 2923 4.546829 AGTTAGGCAAATTCGTCACCTA 57.453 40.909 0.00 0.00 31.79 3.08
2544 2924 4.504858 AGTTAGGCAAATTCGTCACCTAG 58.495 43.478 0.00 0.00 34.59 3.02
2545 2925 4.020485 AGTTAGGCAAATTCGTCACCTAGT 60.020 41.667 0.00 0.00 34.59 2.57
2546 2926 3.418684 AGGCAAATTCGTCACCTAGTT 57.581 42.857 0.00 0.00 0.00 2.24
2547 2927 4.546829 AGGCAAATTCGTCACCTAGTTA 57.453 40.909 0.00 0.00 0.00 2.24
2548 2928 4.504858 AGGCAAATTCGTCACCTAGTTAG 58.495 43.478 0.00 0.00 0.00 2.34
2561 2941 3.362706 CCTAGTTAGGTGGACACTAGCA 58.637 50.000 2.13 0.00 39.07 3.49
2562 2942 3.381908 CCTAGTTAGGTGGACACTAGCAG 59.618 52.174 2.13 0.00 39.07 4.24
2563 2943 2.890814 AGTTAGGTGGACACTAGCAGT 58.109 47.619 2.13 0.00 0.00 4.40
2564 2944 7.121208 CCTAGTTAGGTGGACACTAGCAGTG 62.121 52.000 12.81 12.81 43.77 3.66
2585 2965 4.208686 GCCACTCGGGGTAGAGCG 62.209 72.222 0.00 0.00 41.77 5.03
2586 2966 2.439701 CCACTCGGGGTAGAGCGA 60.440 66.667 0.00 0.00 41.77 4.93
2587 2967 1.828660 CCACTCGGGGTAGAGCGAT 60.829 63.158 0.00 0.00 41.77 4.58
2588 2968 1.360551 CACTCGGGGTAGAGCGATG 59.639 63.158 0.00 0.00 41.77 3.84
2589 2969 2.336809 CTCGGGGTAGAGCGATGC 59.663 66.667 0.00 0.00 0.00 3.91
2590 2970 3.544167 CTCGGGGTAGAGCGATGCG 62.544 68.421 0.00 0.00 0.00 4.73
2591 2971 4.647615 CGGGGTAGAGCGATGCGG 62.648 72.222 0.00 0.00 0.00 5.69
2592 2972 3.537874 GGGGTAGAGCGATGCGGT 61.538 66.667 0.00 0.00 41.33 5.68
2599 2979 3.288484 AGCGATGCGGTCAGAAGA 58.712 55.556 0.00 0.00 29.31 2.87
2600 2980 1.591703 AGCGATGCGGTCAGAAGAA 59.408 52.632 0.00 0.00 29.31 2.52
2601 2981 0.037326 AGCGATGCGGTCAGAAGAAA 60.037 50.000 0.00 0.00 29.31 2.52
2602 2982 0.371645 GCGATGCGGTCAGAAGAAAG 59.628 55.000 0.00 0.00 0.00 2.62
2603 2983 1.996292 CGATGCGGTCAGAAGAAAGA 58.004 50.000 0.00 0.00 0.00 2.52
2604 2984 1.923204 CGATGCGGTCAGAAGAAAGAG 59.077 52.381 0.00 0.00 0.00 2.85
2605 2985 2.416027 CGATGCGGTCAGAAGAAAGAGA 60.416 50.000 0.00 0.00 0.00 3.10
2606 2986 3.736433 CGATGCGGTCAGAAGAAAGAGAT 60.736 47.826 0.00 0.00 0.00 2.75
2607 2987 3.238108 TGCGGTCAGAAGAAAGAGATC 57.762 47.619 0.00 0.00 0.00 2.75
2608 2988 2.189342 GCGGTCAGAAGAAAGAGATCG 58.811 52.381 0.00 0.00 37.64 3.69
2609 2989 2.159366 GCGGTCAGAAGAAAGAGATCGA 60.159 50.000 0.00 0.00 36.78 3.59
2610 2990 3.430931 CGGTCAGAAGAAAGAGATCGAC 58.569 50.000 0.00 0.00 36.78 4.20
2611 2991 3.127895 CGGTCAGAAGAAAGAGATCGACT 59.872 47.826 0.00 0.00 36.78 4.18
2612 2992 4.333095 CGGTCAGAAGAAAGAGATCGACTA 59.667 45.833 0.00 0.00 36.78 2.59
2613 2993 5.575019 GGTCAGAAGAAAGAGATCGACTAC 58.425 45.833 0.00 0.00 0.00 2.73
2614 2994 5.260140 GTCAGAAGAAAGAGATCGACTACG 58.740 45.833 0.00 0.00 41.26 3.51
2615 2995 4.333095 TCAGAAGAAAGAGATCGACTACGG 59.667 45.833 0.00 0.00 40.21 4.02
2616 2996 3.628487 AGAAGAAAGAGATCGACTACGGG 59.372 47.826 0.00 0.00 40.21 5.28
2617 2997 1.677052 AGAAAGAGATCGACTACGGGC 59.323 52.381 0.00 0.00 40.21 6.13
2618 2998 1.404391 GAAAGAGATCGACTACGGGCA 59.596 52.381 0.00 0.00 40.21 5.36
2619 2999 1.025812 AAGAGATCGACTACGGGCAG 58.974 55.000 0.00 0.00 40.21 4.85
2620 3000 0.107116 AGAGATCGACTACGGGCAGT 60.107 55.000 0.00 0.00 40.21 4.40
2621 3001 0.308376 GAGATCGACTACGGGCAGTC 59.692 60.000 0.00 0.00 41.33 3.51
2626 3006 3.735181 GACTACGGGCAGTCGATTT 57.265 52.632 0.00 0.00 35.92 2.17
2627 3007 1.557651 GACTACGGGCAGTCGATTTC 58.442 55.000 0.00 0.00 35.92 2.17
2628 3008 1.134560 GACTACGGGCAGTCGATTTCT 59.865 52.381 0.00 0.00 35.92 2.52
2629 3009 2.357009 GACTACGGGCAGTCGATTTCTA 59.643 50.000 0.00 0.00 35.92 2.10
2630 3010 2.756760 ACTACGGGCAGTCGATTTCTAA 59.243 45.455 0.00 0.00 0.00 2.10
2631 3011 2.981859 ACGGGCAGTCGATTTCTAAT 57.018 45.000 0.00 0.00 0.00 1.73
2632 3012 4.581824 ACTACGGGCAGTCGATTTCTAATA 59.418 41.667 0.00 0.00 0.00 0.98
2633 3013 4.602340 ACGGGCAGTCGATTTCTAATAT 57.398 40.909 0.00 0.00 0.00 1.28
2634 3014 5.717078 ACGGGCAGTCGATTTCTAATATA 57.283 39.130 0.00 0.00 0.00 0.86
2635 3015 6.282199 ACGGGCAGTCGATTTCTAATATAT 57.718 37.500 0.00 0.00 0.00 0.86
2636 3016 6.331061 ACGGGCAGTCGATTTCTAATATATC 58.669 40.000 0.00 0.00 0.00 1.63
2637 3017 6.071560 ACGGGCAGTCGATTTCTAATATATCA 60.072 38.462 0.00 0.00 0.00 2.15
2638 3018 6.253727 CGGGCAGTCGATTTCTAATATATCAC 59.746 42.308 0.00 0.00 0.00 3.06
2639 3019 7.324178 GGGCAGTCGATTTCTAATATATCACT 58.676 38.462 0.00 0.00 0.00 3.41
2640 3020 8.467598 GGGCAGTCGATTTCTAATATATCACTA 58.532 37.037 0.00 0.00 0.00 2.74
2641 3021 9.291664 GGCAGTCGATTTCTAATATATCACTAC 57.708 37.037 0.00 0.00 0.00 2.73
2642 3022 9.001049 GCAGTCGATTTCTAATATATCACTACG 57.999 37.037 0.00 0.00 0.00 3.51
2655 3035 1.081376 ACTACGACAGTGCTCGTGC 60.081 57.895 22.56 1.71 46.28 5.34
2656 3036 1.081442 CTACGACAGTGCTCGTGCA 60.081 57.895 22.56 8.30 46.28 4.57
2664 3044 4.872418 TGCTCGTGCATTGCAATG 57.128 50.000 30.92 30.92 45.31 2.82
2665 3045 1.213275 TGCTCGTGCATTGCAATGG 59.787 52.632 34.23 21.08 45.31 3.16
2666 3046 1.517694 GCTCGTGCATTGCAATGGG 60.518 57.895 34.23 15.77 41.47 4.00
2667 3047 1.936436 GCTCGTGCATTGCAATGGGA 61.936 55.000 34.23 17.64 41.47 4.37
2668 3048 0.742505 CTCGTGCATTGCAATGGGAT 59.257 50.000 34.23 2.32 41.47 3.85
2669 3049 1.948834 CTCGTGCATTGCAATGGGATA 59.051 47.619 34.23 12.48 41.47 2.59
2670 3050 2.555325 CTCGTGCATTGCAATGGGATAT 59.445 45.455 34.23 0.72 41.47 1.63
2671 3051 3.749226 TCGTGCATTGCAATGGGATATA 58.251 40.909 34.23 5.24 41.47 0.86
2672 3052 4.140536 TCGTGCATTGCAATGGGATATAA 58.859 39.130 34.23 4.61 41.47 0.98
2673 3053 4.582240 TCGTGCATTGCAATGGGATATAAA 59.418 37.500 34.23 3.99 41.47 1.40
2674 3054 5.243507 TCGTGCATTGCAATGGGATATAAAT 59.756 36.000 34.23 0.00 41.47 1.40
2675 3055 6.432472 TCGTGCATTGCAATGGGATATAAATA 59.568 34.615 34.23 2.73 41.47 1.40
2676 3056 7.122501 TCGTGCATTGCAATGGGATATAAATAT 59.877 33.333 34.23 0.00 41.47 1.28
2677 3057 7.760794 CGTGCATTGCAATGGGATATAAATATT 59.239 33.333 34.23 0.00 41.47 1.28
2678 3058 9.090692 GTGCATTGCAATGGGATATAAATATTC 57.909 33.333 34.23 16.47 41.47 1.75
2679 3059 8.813951 TGCATTGCAATGGGATATAAATATTCA 58.186 29.630 34.23 18.53 34.76 2.57
2680 3060 9.309516 GCATTGCAATGGGATATAAATATTCAG 57.690 33.333 34.23 8.63 36.90 3.02
2704 3084 9.760660 CAGTATGTTAACTTGAGATTTAACTGC 57.239 33.333 7.22 0.00 38.48 4.40
2705 3085 8.947115 AGTATGTTAACTTGAGATTTAACTGCC 58.053 33.333 7.22 0.00 38.48 4.85
2706 3086 6.569179 TGTTAACTTGAGATTTAACTGCCC 57.431 37.500 7.22 0.00 38.48 5.36
2707 3087 5.180492 TGTTAACTTGAGATTTAACTGCCCG 59.820 40.000 7.22 0.00 38.48 6.13
2708 3088 3.418684 ACTTGAGATTTAACTGCCCGT 57.581 42.857 0.00 0.00 0.00 5.28
2709 3089 3.074412 ACTTGAGATTTAACTGCCCGTG 58.926 45.455 0.00 0.00 0.00 4.94
2710 3090 3.244422 ACTTGAGATTTAACTGCCCGTGA 60.244 43.478 0.00 0.00 0.00 4.35
2711 3091 3.627395 TGAGATTTAACTGCCCGTGAT 57.373 42.857 0.00 0.00 0.00 3.06
2712 3092 3.950397 TGAGATTTAACTGCCCGTGATT 58.050 40.909 0.00 0.00 0.00 2.57
2713 3093 4.331968 TGAGATTTAACTGCCCGTGATTT 58.668 39.130 0.00 0.00 0.00 2.17
2714 3094 5.492895 TGAGATTTAACTGCCCGTGATTTA 58.507 37.500 0.00 0.00 0.00 1.40
2715 3095 5.353123 TGAGATTTAACTGCCCGTGATTTAC 59.647 40.000 0.00 0.00 0.00 2.01
2716 3096 5.250200 AGATTTAACTGCCCGTGATTTACA 58.750 37.500 0.00 0.00 0.00 2.41
2717 3097 5.885912 AGATTTAACTGCCCGTGATTTACAT 59.114 36.000 0.00 0.00 0.00 2.29
2718 3098 5.968528 TTTAACTGCCCGTGATTTACATT 57.031 34.783 0.00 0.00 0.00 2.71
2719 3099 7.554835 AGATTTAACTGCCCGTGATTTACATTA 59.445 33.333 0.00 0.00 0.00 1.90
2720 3100 7.633193 TTTAACTGCCCGTGATTTACATTAT 57.367 32.000 0.00 0.00 0.00 1.28
2721 3101 8.734218 TTTAACTGCCCGTGATTTACATTATA 57.266 30.769 0.00 0.00 0.00 0.98
2722 3102 8.911918 TTAACTGCCCGTGATTTACATTATAT 57.088 30.769 0.00 0.00 0.00 0.86
2723 3103 7.817418 AACTGCCCGTGATTTACATTATATT 57.183 32.000 0.00 0.00 0.00 1.28
2724 3104 7.817418 ACTGCCCGTGATTTACATTATATTT 57.183 32.000 0.00 0.00 0.00 1.40
2725 3105 8.232913 ACTGCCCGTGATTTACATTATATTTT 57.767 30.769 0.00 0.00 0.00 1.82
2726 3106 8.134895 ACTGCCCGTGATTTACATTATATTTTG 58.865 33.333 0.00 0.00 0.00 2.44
2727 3107 8.226819 TGCCCGTGATTTACATTATATTTTGA 57.773 30.769 0.00 0.00 0.00 2.69
2728 3108 8.855110 TGCCCGTGATTTACATTATATTTTGAT 58.145 29.630 0.00 0.00 0.00 2.57
2729 3109 9.128107 GCCCGTGATTTACATTATATTTTGATG 57.872 33.333 0.00 0.00 0.00 3.07
2776 3156 8.970691 AGTAAAATTGAGGTGATTGATTTTCG 57.029 30.769 0.00 0.00 33.45 3.46
2777 3157 8.576442 AGTAAAATTGAGGTGATTGATTTTCGT 58.424 29.630 0.00 0.00 33.45 3.85
2778 3158 9.191995 GTAAAATTGAGGTGATTGATTTTCGTT 57.808 29.630 0.00 0.00 33.45 3.85
2988 3368 9.550406 AAATGAAACATGAAACATCACATTTCT 57.450 25.926 0.00 2.99 37.05 2.52
2989 3369 9.550406 AATGAAACATGAAACATCACATTTCTT 57.450 25.926 0.00 7.86 37.05 2.52
2990 3370 8.945481 TGAAACATGAAACATCACATTTCTTT 57.055 26.923 0.00 0.00 37.05 2.52
2991 3371 9.381033 TGAAACATGAAACATCACATTTCTTTT 57.619 25.926 0.00 0.00 37.05 2.27
2994 3374 9.480053 AACATGAAACATCACATTTCTTTTAGG 57.520 29.630 0.00 0.00 37.05 2.69
2995 3375 8.859090 ACATGAAACATCACATTTCTTTTAGGA 58.141 29.630 0.00 0.00 37.05 2.94
2996 3376 9.132521 CATGAAACATCACATTTCTTTTAGGAC 57.867 33.333 0.00 0.00 37.05 3.85
2997 3377 7.359595 TGAAACATCACATTTCTTTTAGGACG 58.640 34.615 0.00 0.00 37.05 4.79
2998 3378 5.296813 ACATCACATTTCTTTTAGGACGC 57.703 39.130 0.00 0.00 0.00 5.19
2999 3379 4.156008 ACATCACATTTCTTTTAGGACGCC 59.844 41.667 0.00 0.00 0.00 5.68
3000 3380 3.745799 TCACATTTCTTTTAGGACGCCA 58.254 40.909 0.00 0.00 0.00 5.69
3001 3381 4.138290 TCACATTTCTTTTAGGACGCCAA 58.862 39.130 0.00 0.00 0.00 4.52
3002 3382 4.764823 TCACATTTCTTTTAGGACGCCAAT 59.235 37.500 0.00 0.00 0.00 3.16
3003 3383 5.941058 TCACATTTCTTTTAGGACGCCAATA 59.059 36.000 0.00 0.00 0.00 1.90
3004 3384 6.601613 TCACATTTCTTTTAGGACGCCAATAT 59.398 34.615 0.00 0.00 0.00 1.28
3005 3385 7.122055 TCACATTTCTTTTAGGACGCCAATATT 59.878 33.333 0.00 0.00 0.00 1.28
3006 3386 7.220683 CACATTTCTTTTAGGACGCCAATATTG 59.779 37.037 8.58 8.58 0.00 1.90
3007 3387 7.122055 ACATTTCTTTTAGGACGCCAATATTGA 59.878 33.333 17.23 0.00 0.00 2.57
3008 3388 6.677781 TTCTTTTAGGACGCCAATATTGAG 57.322 37.500 17.23 12.29 0.00 3.02
3009 3389 5.123227 TCTTTTAGGACGCCAATATTGAGG 58.877 41.667 17.23 10.12 0.00 3.86
3010 3390 3.485463 TTAGGACGCCAATATTGAGGG 57.515 47.619 17.23 15.84 0.00 4.30
3011 3391 1.507140 AGGACGCCAATATTGAGGGA 58.493 50.000 17.23 0.00 0.00 4.20
3012 3392 1.843851 AGGACGCCAATATTGAGGGAA 59.156 47.619 17.23 0.00 0.00 3.97
3013 3393 1.947456 GGACGCCAATATTGAGGGAAC 59.053 52.381 17.23 12.78 0.00 3.62
3014 3394 1.597663 GACGCCAATATTGAGGGAACG 59.402 52.381 17.23 11.79 0.00 3.95
3015 3395 1.065709 ACGCCAATATTGAGGGAACGT 60.066 47.619 17.23 12.34 0.00 3.99
3016 3396 2.168936 ACGCCAATATTGAGGGAACGTA 59.831 45.455 17.23 0.00 0.00 3.57
3017 3397 2.542595 CGCCAATATTGAGGGAACGTAC 59.457 50.000 17.23 0.00 0.00 3.67
3018 3398 2.542595 GCCAATATTGAGGGAACGTACG 59.457 50.000 17.23 15.01 0.00 3.67
3019 3399 3.128349 CCAATATTGAGGGAACGTACGG 58.872 50.000 21.06 1.43 0.00 4.02
3020 3400 3.431207 CCAATATTGAGGGAACGTACGGT 60.431 47.826 21.06 14.45 0.00 4.83
3021 3401 2.945447 TATTGAGGGAACGTACGGTG 57.055 50.000 21.06 0.00 0.00 4.94
3022 3402 0.248289 ATTGAGGGAACGTACGGTGG 59.752 55.000 21.06 0.00 0.00 4.61
3023 3403 1.818959 TTGAGGGAACGTACGGTGGG 61.819 60.000 21.06 0.00 0.00 4.61
3024 3404 1.978617 GAGGGAACGTACGGTGGGA 60.979 63.158 21.06 0.00 0.00 4.37
3025 3405 1.941999 GAGGGAACGTACGGTGGGAG 61.942 65.000 21.06 0.00 0.00 4.30
3026 3406 2.125793 GGAACGTACGGTGGGAGC 60.126 66.667 21.06 0.00 0.00 4.70
3027 3407 2.125793 GAACGTACGGTGGGAGCC 60.126 66.667 21.06 0.00 0.00 4.70
3028 3408 3.654173 GAACGTACGGTGGGAGCCC 62.654 68.421 21.06 0.00 0.00 5.19
3029 3409 4.691359 ACGTACGGTGGGAGCCCT 62.691 66.667 21.06 0.00 36.94 5.19
3030 3410 3.387947 CGTACGGTGGGAGCCCTT 61.388 66.667 7.57 0.00 36.94 3.95
3031 3411 2.582978 GTACGGTGGGAGCCCTTC 59.417 66.667 7.16 0.27 36.94 3.46
3032 3412 2.686106 TACGGTGGGAGCCCTTCC 60.686 66.667 7.16 8.44 46.00 3.46
3039 3419 3.787001 GGAGCCCTTCCCAGACCG 61.787 72.222 0.00 0.00 40.37 4.79
3040 3420 2.683933 GAGCCCTTCCCAGACCGA 60.684 66.667 0.00 0.00 0.00 4.69
3041 3421 2.203938 AGCCCTTCCCAGACCGAA 60.204 61.111 0.00 0.00 0.00 4.30
3042 3422 2.046217 GCCCTTCCCAGACCGAAC 60.046 66.667 0.00 0.00 0.00 3.95
3043 3423 2.264794 CCCTTCCCAGACCGAACG 59.735 66.667 0.00 0.00 0.00 3.95
3044 3424 2.280552 CCCTTCCCAGACCGAACGA 61.281 63.158 0.00 0.00 0.00 3.85
3045 3425 1.669440 CCTTCCCAGACCGAACGAA 59.331 57.895 0.00 0.00 0.00 3.85
3046 3426 0.249398 CCTTCCCAGACCGAACGAAT 59.751 55.000 0.00 0.00 0.00 3.34
3047 3427 1.641577 CTTCCCAGACCGAACGAATC 58.358 55.000 0.00 0.00 0.00 2.52
3048 3428 1.204941 CTTCCCAGACCGAACGAATCT 59.795 52.381 0.00 0.00 0.00 2.40
3049 3429 1.263356 TCCCAGACCGAACGAATCTT 58.737 50.000 0.00 0.00 0.00 2.40
3050 3430 1.621814 TCCCAGACCGAACGAATCTTT 59.378 47.619 0.00 0.00 0.00 2.52
3051 3431 2.000447 CCCAGACCGAACGAATCTTTC 59.000 52.381 0.00 0.00 0.00 2.62
3052 3432 2.000447 CCAGACCGAACGAATCTTTCC 59.000 52.381 0.00 0.00 0.00 3.13
3053 3433 2.000447 CAGACCGAACGAATCTTTCCC 59.000 52.381 0.00 0.00 0.00 3.97
3054 3434 1.066358 AGACCGAACGAATCTTTCCCC 60.066 52.381 0.00 0.00 0.00 4.81
3055 3435 0.688487 ACCGAACGAATCTTTCCCCA 59.312 50.000 0.00 0.00 0.00 4.96
3056 3436 1.072648 ACCGAACGAATCTTTCCCCAA 59.927 47.619 0.00 0.00 0.00 4.12
3057 3437 1.737793 CCGAACGAATCTTTCCCCAAG 59.262 52.381 0.00 0.00 0.00 3.61
3058 3438 1.737793 CGAACGAATCTTTCCCCAAGG 59.262 52.381 0.00 0.00 32.64 3.61
3059 3439 1.472878 GAACGAATCTTTCCCCAAGGC 59.527 52.381 0.00 0.00 32.64 4.35
3060 3440 0.404040 ACGAATCTTTCCCCAAGGCA 59.596 50.000 0.00 0.00 32.64 4.75
3061 3441 1.098050 CGAATCTTTCCCCAAGGCAG 58.902 55.000 0.00 0.00 32.64 4.85
3062 3442 1.478631 GAATCTTTCCCCAAGGCAGG 58.521 55.000 0.00 0.00 32.64 4.85
3070 3450 2.045926 CCAAGGCAGGGAGGAACG 60.046 66.667 0.00 0.00 0.00 3.95
3071 3451 2.592993 CCAAGGCAGGGAGGAACGA 61.593 63.158 0.00 0.00 0.00 3.85
3072 3452 1.604378 CAAGGCAGGGAGGAACGAT 59.396 57.895 0.00 0.00 0.00 3.73
3073 3453 0.462759 CAAGGCAGGGAGGAACGATC 60.463 60.000 0.00 0.00 0.00 3.69
3074 3454 1.961180 AAGGCAGGGAGGAACGATCG 61.961 60.000 14.88 14.88 0.00 3.69
3075 3455 2.423898 GGCAGGGAGGAACGATCGA 61.424 63.158 24.34 0.00 0.00 3.59
3076 3456 1.515954 GCAGGGAGGAACGATCGAA 59.484 57.895 24.34 0.00 0.00 3.71
3077 3457 0.806492 GCAGGGAGGAACGATCGAAC 60.806 60.000 24.34 14.36 0.00 3.95
3078 3458 0.530744 CAGGGAGGAACGATCGAACA 59.469 55.000 24.34 0.00 0.00 3.18
3079 3459 1.067142 CAGGGAGGAACGATCGAACAA 60.067 52.381 24.34 0.00 0.00 2.83
3080 3460 1.831736 AGGGAGGAACGATCGAACAAT 59.168 47.619 24.34 7.44 0.00 2.71
3081 3461 2.236395 AGGGAGGAACGATCGAACAATT 59.764 45.455 24.34 4.63 0.00 2.32
3082 3462 3.007635 GGGAGGAACGATCGAACAATTT 58.992 45.455 24.34 3.77 0.00 1.82
3083 3463 3.063588 GGGAGGAACGATCGAACAATTTC 59.936 47.826 24.34 13.41 0.00 2.17
3095 3475 4.147219 GAACAATTTCGTTCTGAGTGGG 57.853 45.455 2.26 0.00 41.70 4.61
3096 3476 3.485463 ACAATTTCGTTCTGAGTGGGA 57.515 42.857 0.00 0.00 0.00 4.37
3097 3477 3.403038 ACAATTTCGTTCTGAGTGGGAG 58.597 45.455 0.00 0.00 0.00 4.30
3098 3478 2.744202 CAATTTCGTTCTGAGTGGGAGG 59.256 50.000 0.00 0.00 0.00 4.30
3099 3479 0.034896 TTTCGTTCTGAGTGGGAGGC 59.965 55.000 0.00 0.00 0.00 4.70
3100 3480 1.827399 TTCGTTCTGAGTGGGAGGCC 61.827 60.000 0.00 0.00 0.00 5.19
3101 3481 2.286523 CGTTCTGAGTGGGAGGCCT 61.287 63.158 3.86 3.86 0.00 5.19
3102 3482 1.599576 GTTCTGAGTGGGAGGCCTC 59.400 63.158 25.59 25.59 0.00 4.70
3112 3492 4.388499 GAGGCCTCCCAACGCGAA 62.388 66.667 23.19 0.00 0.00 4.70
3113 3493 4.699522 AGGCCTCCCAACGCGAAC 62.700 66.667 15.93 0.00 0.00 3.95
3115 3495 2.975799 GCCTCCCAACGCGAACAA 60.976 61.111 15.93 0.00 0.00 2.83
3116 3496 2.943653 CCTCCCAACGCGAACAAC 59.056 61.111 15.93 0.00 0.00 3.32
3117 3497 2.613506 CCTCCCAACGCGAACAACC 61.614 63.158 15.93 0.00 0.00 3.77
3118 3498 1.597027 CTCCCAACGCGAACAACCT 60.597 57.895 15.93 0.00 0.00 3.50
3119 3499 1.153127 TCCCAACGCGAACAACCTT 60.153 52.632 15.93 0.00 0.00 3.50
3120 3500 0.106335 TCCCAACGCGAACAACCTTA 59.894 50.000 15.93 0.00 0.00 2.69
3121 3501 1.161843 CCCAACGCGAACAACCTTAT 58.838 50.000 15.93 0.00 0.00 1.73
3122 3502 1.135803 CCCAACGCGAACAACCTTATG 60.136 52.381 15.93 0.00 0.00 1.90
3123 3503 1.533731 CCAACGCGAACAACCTTATGT 59.466 47.619 15.93 0.00 34.24 2.29
3124 3504 2.412325 CCAACGCGAACAACCTTATGTC 60.412 50.000 15.93 0.00 31.81 3.06
3125 3505 1.065358 ACGCGAACAACCTTATGTCG 58.935 50.000 15.93 0.00 31.81 4.35
3126 3506 0.247145 CGCGAACAACCTTATGTCGC 60.247 55.000 0.00 6.30 41.74 5.19
3127 3507 1.076332 GCGAACAACCTTATGTCGCT 58.924 50.000 8.94 0.00 41.82 4.93
3128 3508 1.463444 GCGAACAACCTTATGTCGCTT 59.537 47.619 8.94 0.00 41.82 4.68
3129 3509 2.474032 GCGAACAACCTTATGTCGCTTC 60.474 50.000 8.94 0.00 41.82 3.86
3130 3510 2.222508 CGAACAACCTTATGTCGCTTCG 60.223 50.000 0.00 0.00 31.81 3.79
3131 3511 2.450609 ACAACCTTATGTCGCTTCGT 57.549 45.000 0.00 0.00 0.00 3.85
3132 3512 2.066262 ACAACCTTATGTCGCTTCGTG 58.934 47.619 0.00 0.00 0.00 4.35
3133 3513 1.076332 AACCTTATGTCGCTTCGTGC 58.924 50.000 0.00 0.00 38.57 5.34
3134 3514 0.246635 ACCTTATGTCGCTTCGTGCT 59.753 50.000 2.29 0.00 40.11 4.40
3135 3515 1.475280 ACCTTATGTCGCTTCGTGCTA 59.525 47.619 2.29 0.00 40.11 3.49
3136 3516 2.094390 ACCTTATGTCGCTTCGTGCTAA 60.094 45.455 2.29 0.00 40.11 3.09
3137 3517 2.281762 CCTTATGTCGCTTCGTGCTAAC 59.718 50.000 2.29 1.71 40.11 2.34
3138 3518 2.640346 TATGTCGCTTCGTGCTAACA 57.360 45.000 9.20 9.20 38.64 2.41
3139 3519 1.350193 ATGTCGCTTCGTGCTAACAG 58.650 50.000 11.21 0.00 38.03 3.16
3140 3520 0.666274 TGTCGCTTCGTGCTAACAGG 60.666 55.000 2.29 0.00 40.11 4.00
3141 3521 1.736645 TCGCTTCGTGCTAACAGGC 60.737 57.895 2.29 0.00 40.11 4.85
3142 3522 2.740714 CGCTTCGTGCTAACAGGCC 61.741 63.158 0.00 0.00 40.11 5.19
3143 3523 1.671054 GCTTCGTGCTAACAGGCCA 60.671 57.895 5.01 0.00 38.95 5.36
3144 3524 1.234615 GCTTCGTGCTAACAGGCCAA 61.235 55.000 5.01 0.00 38.95 4.52
3145 3525 1.234821 CTTCGTGCTAACAGGCCAAA 58.765 50.000 5.01 0.00 0.00 3.28
3146 3526 0.948678 TTCGTGCTAACAGGCCAAAC 59.051 50.000 5.01 0.00 0.00 2.93
3147 3527 0.179043 TCGTGCTAACAGGCCAAACA 60.179 50.000 5.01 0.00 0.00 2.83
3148 3528 0.881118 CGTGCTAACAGGCCAAACAT 59.119 50.000 5.01 0.00 0.00 2.71
3149 3529 1.401409 CGTGCTAACAGGCCAAACATG 60.401 52.381 5.01 0.00 0.00 3.21
3150 3530 0.602562 TGCTAACAGGCCAAACATGC 59.397 50.000 5.01 2.30 0.00 4.06
3158 3538 2.777832 GGCCAAACATGCCCATTTAA 57.222 45.000 0.00 0.00 43.33 1.52
3159 3539 2.631267 GGCCAAACATGCCCATTTAAG 58.369 47.619 0.00 0.00 43.33 1.85
3160 3540 2.631267 GCCAAACATGCCCATTTAAGG 58.369 47.619 0.00 0.00 0.00 2.69
3161 3541 2.027285 GCCAAACATGCCCATTTAAGGT 60.027 45.455 0.00 0.00 0.00 3.50
3162 3542 3.196685 GCCAAACATGCCCATTTAAGGTA 59.803 43.478 0.00 0.00 0.00 3.08
3163 3543 4.754322 CCAAACATGCCCATTTAAGGTAC 58.246 43.478 0.00 0.00 0.00 3.34
3164 3544 4.382577 CCAAACATGCCCATTTAAGGTACC 60.383 45.833 2.73 2.73 0.00 3.34
3165 3545 3.026707 ACATGCCCATTTAAGGTACCC 57.973 47.619 8.74 0.00 0.00 3.69
3166 3546 2.313342 ACATGCCCATTTAAGGTACCCA 59.687 45.455 8.74 0.00 0.00 4.51
3167 3547 3.245803 ACATGCCCATTTAAGGTACCCAA 60.246 43.478 8.74 0.00 0.00 4.12
3168 3548 3.544698 TGCCCATTTAAGGTACCCAAA 57.455 42.857 8.74 9.97 0.00 3.28
3169 3549 3.858135 TGCCCATTTAAGGTACCCAAAA 58.142 40.909 8.74 9.95 0.00 2.44
3170 3550 3.579151 TGCCCATTTAAGGTACCCAAAAC 59.421 43.478 8.74 2.61 0.00 2.43
3171 3551 3.367600 GCCCATTTAAGGTACCCAAAACG 60.368 47.826 8.74 1.93 0.00 3.60
3172 3552 3.827876 CCCATTTAAGGTACCCAAAACGT 59.172 43.478 8.74 0.00 0.00 3.99
3173 3553 5.008980 CCCATTTAAGGTACCCAAAACGTA 58.991 41.667 8.74 0.00 0.00 3.57
3174 3554 5.476254 CCCATTTAAGGTACCCAAAACGTAA 59.524 40.000 8.74 0.00 0.00 3.18
3175 3555 6.015603 CCCATTTAAGGTACCCAAAACGTAAA 60.016 38.462 8.74 3.20 0.00 2.01
3176 3556 7.432059 CCATTTAAGGTACCCAAAACGTAAAA 58.568 34.615 8.74 0.00 0.00 1.52
3177 3557 7.924947 CCATTTAAGGTACCCAAAACGTAAAAA 59.075 33.333 8.74 0.00 0.00 1.94
3203 3583 9.549078 AAAAACAGAAAACCAACTAAAAACTGA 57.451 25.926 0.00 0.00 0.00 3.41
3204 3584 8.757164 AAACAGAAAACCAACTAAAAACTGAG 57.243 30.769 0.00 0.00 0.00 3.35
3205 3585 7.696992 ACAGAAAACCAACTAAAAACTGAGA 57.303 32.000 0.00 0.00 0.00 3.27
3206 3586 8.117813 ACAGAAAACCAACTAAAAACTGAGAA 57.882 30.769 0.00 0.00 0.00 2.87
3207 3587 8.581578 ACAGAAAACCAACTAAAAACTGAGAAA 58.418 29.630 0.00 0.00 0.00 2.52
3208 3588 9.418045 CAGAAAACCAACTAAAAACTGAGAAAA 57.582 29.630 0.00 0.00 0.00 2.29
3209 3589 9.990360 AGAAAACCAACTAAAAACTGAGAAAAA 57.010 25.926 0.00 0.00 0.00 1.94
3233 3613 9.843334 AAAAACTTTACAGTAAAAATCACACGA 57.157 25.926 7.18 0.00 30.68 4.35
3234 3614 9.843334 AAAACTTTACAGTAAAAATCACACGAA 57.157 25.926 7.18 0.00 30.68 3.85
3235 3615 9.843334 AAACTTTACAGTAAAAATCACACGAAA 57.157 25.926 7.18 0.00 30.68 3.46
3237 3617 9.659830 ACTTTACAGTAAAAATCACACGAAATC 57.340 29.630 7.18 0.00 0.00 2.17
3238 3618 9.878599 CTTTACAGTAAAAATCACACGAAATCT 57.121 29.630 7.18 0.00 0.00 2.40
3241 3621 8.827177 ACAGTAAAAATCACACGAAATCTAGA 57.173 30.769 0.00 0.00 0.00 2.43
3242 3622 8.709646 ACAGTAAAAATCACACGAAATCTAGAC 58.290 33.333 0.00 0.00 0.00 2.59
3243 3623 8.708742 CAGTAAAAATCACACGAAATCTAGACA 58.291 33.333 0.00 0.00 0.00 3.41
3244 3624 9.268268 AGTAAAAATCACACGAAATCTAGACAA 57.732 29.630 0.00 0.00 0.00 3.18
3245 3625 9.530129 GTAAAAATCACACGAAATCTAGACAAG 57.470 33.333 0.00 0.00 0.00 3.16
3246 3626 7.730364 AAAATCACACGAAATCTAGACAAGT 57.270 32.000 0.00 0.00 0.00 3.16
3247 3627 7.730364 AAATCACACGAAATCTAGACAAGTT 57.270 32.000 0.00 0.00 0.00 2.66
3248 3628 6.952935 ATCACACGAAATCTAGACAAGTTC 57.047 37.500 0.00 0.00 0.00 3.01
3249 3629 5.838529 TCACACGAAATCTAGACAAGTTCA 58.161 37.500 0.00 0.00 0.00 3.18
3250 3630 6.455647 TCACACGAAATCTAGACAAGTTCAT 58.544 36.000 0.00 0.00 0.00 2.57
3251 3631 7.599171 TCACACGAAATCTAGACAAGTTCATA 58.401 34.615 0.00 0.00 0.00 2.15
3252 3632 8.251026 TCACACGAAATCTAGACAAGTTCATAT 58.749 33.333 0.00 0.00 0.00 1.78
3253 3633 9.516314 CACACGAAATCTAGACAAGTTCATATA 57.484 33.333 0.00 0.00 0.00 0.86
3254 3634 9.737427 ACACGAAATCTAGACAAGTTCATATAG 57.263 33.333 0.00 0.00 0.00 1.31
3255 3635 9.952188 CACGAAATCTAGACAAGTTCATATAGA 57.048 33.333 0.00 0.00 0.00 1.98
3308 3688 9.938280 ATTGCCATGGATTAGATGATAAAATTG 57.062 29.630 18.40 0.00 0.00 2.32
3309 3689 7.380536 TGCCATGGATTAGATGATAAAATTGC 58.619 34.615 18.40 0.00 0.00 3.56
3310 3690 7.015389 TGCCATGGATTAGATGATAAAATTGCA 59.985 33.333 18.40 0.00 0.00 4.08
3311 3691 7.330208 GCCATGGATTAGATGATAAAATTGCAC 59.670 37.037 18.40 0.00 0.00 4.57
3312 3692 8.582437 CCATGGATTAGATGATAAAATTGCACT 58.418 33.333 5.56 0.00 0.00 4.40
3313 3693 9.406828 CATGGATTAGATGATAAAATTGCACTG 57.593 33.333 0.00 0.00 0.00 3.66
3314 3694 8.523915 TGGATTAGATGATAAAATTGCACTGT 57.476 30.769 0.00 0.00 0.00 3.55
3315 3695 8.970020 TGGATTAGATGATAAAATTGCACTGTT 58.030 29.630 0.00 0.00 0.00 3.16
3332 3712 8.844441 TGCACTGTTATACTTGTTAAAACAAC 57.156 30.769 4.19 0.00 43.45 3.32
3333 3713 8.459635 TGCACTGTTATACTTGTTAAAACAACA 58.540 29.630 4.19 0.78 43.45 3.33
3334 3714 9.291664 GCACTGTTATACTTGTTAAAACAACAA 57.708 29.630 4.19 2.87 43.45 2.83
3342 3722 7.772332 ACTTGTTAAAACAACAACACAAACA 57.228 28.000 4.19 0.00 43.45 2.83
3343 3723 8.197988 ACTTGTTAAAACAACAACACAAACAA 57.802 26.923 4.19 0.00 43.45 2.83
3344 3724 8.665685 ACTTGTTAAAACAACAACACAAACAAA 58.334 25.926 4.19 0.00 43.45 2.83
3345 3725 9.490663 CTTGTTAAAACAACAACACAAACAAAA 57.509 25.926 4.19 0.00 43.45 2.44
3346 3726 9.490663 TTGTTAAAACAACAACACAAACAAAAG 57.509 25.926 4.19 0.00 43.45 2.27
3347 3727 8.665685 TGTTAAAACAACAACACAAACAAAAGT 58.334 25.926 0.00 0.00 35.67 2.66
3350 3730 6.441099 AACAACAACACAAACAAAAGTACG 57.559 33.333 0.00 0.00 0.00 3.67
3351 3731 5.521544 ACAACAACACAAACAAAAGTACGT 58.478 33.333 0.00 0.00 0.00 3.57
3352 3732 6.666417 ACAACAACACAAACAAAAGTACGTA 58.334 32.000 0.00 0.00 0.00 3.57
3353 3733 6.578172 ACAACAACACAAACAAAAGTACGTAC 59.422 34.615 18.10 18.10 0.00 3.67
3354 3734 6.238610 ACAACACAAACAAAAGTACGTACA 57.761 33.333 26.55 0.00 0.00 2.90
3355 3735 6.844254 ACAACACAAACAAAAGTACGTACAT 58.156 32.000 26.55 13.27 0.00 2.29
3356 3736 6.743627 ACAACACAAACAAAAGTACGTACATG 59.256 34.615 26.55 22.02 0.00 3.21
3357 3737 5.267776 ACACAAACAAAAGTACGTACATGC 58.732 37.500 26.55 0.31 0.00 4.06
3358 3738 4.673311 CACAAACAAAAGTACGTACATGCC 59.327 41.667 26.55 0.00 0.00 4.40
3359 3739 4.335874 ACAAACAAAAGTACGTACATGCCA 59.664 37.500 26.55 0.00 0.00 4.92
3360 3740 5.009210 ACAAACAAAAGTACGTACATGCCAT 59.991 36.000 26.55 6.83 0.00 4.40
3361 3741 4.678509 ACAAAAGTACGTACATGCCATG 57.321 40.909 26.55 17.12 0.00 3.66
3362 3742 4.320023 ACAAAAGTACGTACATGCCATGA 58.680 39.130 26.55 0.00 0.00 3.07
3363 3743 4.153475 ACAAAAGTACGTACATGCCATGAC 59.847 41.667 26.55 4.58 0.00 3.06
3364 3744 3.603158 AAGTACGTACATGCCATGACA 57.397 42.857 26.55 0.00 0.00 3.58
3365 3745 3.165058 AGTACGTACATGCCATGACAG 57.835 47.619 26.55 4.24 0.00 3.51
3366 3746 2.758423 AGTACGTACATGCCATGACAGA 59.242 45.455 26.55 0.00 0.00 3.41
3367 3747 2.299993 ACGTACATGCCATGACAGAG 57.700 50.000 12.53 0.73 0.00 3.35
3368 3748 0.933097 CGTACATGCCATGACAGAGC 59.067 55.000 12.53 0.00 0.00 4.09
3369 3749 1.740043 CGTACATGCCATGACAGAGCA 60.740 52.381 12.53 4.79 41.50 4.26
3370 3750 1.667724 GTACATGCCATGACAGAGCAC 59.332 52.381 12.53 0.00 39.77 4.40
3371 3751 0.037160 ACATGCCATGACAGAGCACA 59.963 50.000 12.53 0.00 39.77 4.57
3372 3752 1.170442 CATGCCATGACAGAGCACAA 58.830 50.000 0.00 0.00 39.77 3.33
3373 3753 1.135489 CATGCCATGACAGAGCACAAC 60.135 52.381 0.00 0.00 39.77 3.32
3374 3754 0.109153 TGCCATGACAGAGCACAACT 59.891 50.000 0.00 0.00 0.00 3.16
3375 3755 1.347378 TGCCATGACAGAGCACAACTA 59.653 47.619 0.00 0.00 0.00 2.24
3376 3756 2.005451 GCCATGACAGAGCACAACTAG 58.995 52.381 0.00 0.00 0.00 2.57
3377 3757 2.005451 CCATGACAGAGCACAACTAGC 58.995 52.381 0.00 0.00 0.00 3.42
3378 3758 2.613725 CCATGACAGAGCACAACTAGCA 60.614 50.000 0.00 0.00 0.00 3.49
3379 3759 2.908688 TGACAGAGCACAACTAGCAA 57.091 45.000 0.00 0.00 0.00 3.91
3380 3760 3.192541 TGACAGAGCACAACTAGCAAA 57.807 42.857 0.00 0.00 0.00 3.68
3381 3761 3.540617 TGACAGAGCACAACTAGCAAAA 58.459 40.909 0.00 0.00 0.00 2.44
3382 3762 4.136796 TGACAGAGCACAACTAGCAAAAT 58.863 39.130 0.00 0.00 0.00 1.82
3383 3763 4.580167 TGACAGAGCACAACTAGCAAAATT 59.420 37.500 0.00 0.00 0.00 1.82
3384 3764 5.067674 TGACAGAGCACAACTAGCAAAATTT 59.932 36.000 0.00 0.00 0.00 1.82
3385 3765 5.906073 ACAGAGCACAACTAGCAAAATTTT 58.094 33.333 0.00 0.00 0.00 1.82
3386 3766 5.979517 ACAGAGCACAACTAGCAAAATTTTC 59.020 36.000 0.00 0.00 0.00 2.29
3387 3767 5.978919 CAGAGCACAACTAGCAAAATTTTCA 59.021 36.000 0.00 0.00 0.00 2.69
3388 3768 6.643770 CAGAGCACAACTAGCAAAATTTTCAT 59.356 34.615 0.00 0.00 0.00 2.57
3389 3769 6.643770 AGAGCACAACTAGCAAAATTTTCATG 59.356 34.615 0.00 0.00 0.00 3.07
3390 3770 5.697633 AGCACAACTAGCAAAATTTTCATGG 59.302 36.000 0.00 0.00 0.00 3.66
3391 3771 5.466393 GCACAACTAGCAAAATTTTCATGGT 59.534 36.000 0.00 0.00 0.00 3.55
3392 3772 6.346838 GCACAACTAGCAAAATTTTCATGGTC 60.347 38.462 0.00 0.00 0.00 4.02
3393 3773 6.925165 CACAACTAGCAAAATTTTCATGGTCT 59.075 34.615 0.00 0.00 0.00 3.85
3394 3774 6.925165 ACAACTAGCAAAATTTTCATGGTCTG 59.075 34.615 0.00 5.25 0.00 3.51
3395 3775 5.473039 ACTAGCAAAATTTTCATGGTCTGC 58.527 37.500 0.00 0.00 0.00 4.26
3396 3776 4.339872 AGCAAAATTTTCATGGTCTGCA 57.660 36.364 0.00 0.00 0.00 4.41
3397 3777 4.901868 AGCAAAATTTTCATGGTCTGCAT 58.098 34.783 0.00 0.00 0.00 3.96
3398 3778 5.310451 AGCAAAATTTTCATGGTCTGCATT 58.690 33.333 0.00 0.00 0.00 3.56
3399 3779 6.465948 AGCAAAATTTTCATGGTCTGCATTA 58.534 32.000 0.00 0.00 0.00 1.90
3400 3780 6.935771 AGCAAAATTTTCATGGTCTGCATTAA 59.064 30.769 0.00 0.00 0.00 1.40
3401 3781 7.444792 AGCAAAATTTTCATGGTCTGCATTAAA 59.555 29.630 0.00 0.00 0.00 1.52
3402 3782 8.074972 GCAAAATTTTCATGGTCTGCATTAAAA 58.925 29.630 0.00 0.00 0.00 1.52
3403 3783 9.947669 CAAAATTTTCATGGTCTGCATTAAAAA 57.052 25.926 0.00 0.00 0.00 1.94
3405 3785 7.910441 ATTTTCATGGTCTGCATTAAAAAGG 57.090 32.000 0.00 0.00 0.00 3.11
3406 3786 6.662865 TTTCATGGTCTGCATTAAAAAGGA 57.337 33.333 0.00 0.00 0.00 3.36
3407 3787 5.902613 TCATGGTCTGCATTAAAAAGGAG 57.097 39.130 0.00 0.00 0.00 3.69
3408 3788 4.706476 TCATGGTCTGCATTAAAAAGGAGG 59.294 41.667 0.00 0.00 0.00 4.30
3409 3789 4.380843 TGGTCTGCATTAAAAAGGAGGA 57.619 40.909 0.00 0.00 0.00 3.71
3410 3790 4.079253 TGGTCTGCATTAAAAAGGAGGAC 58.921 43.478 0.00 0.00 0.00 3.85
3411 3791 4.079253 GGTCTGCATTAAAAAGGAGGACA 58.921 43.478 0.00 0.00 0.00 4.02
3412 3792 4.706962 GGTCTGCATTAAAAAGGAGGACAT 59.293 41.667 0.00 0.00 0.00 3.06
3413 3793 5.393461 GGTCTGCATTAAAAAGGAGGACATG 60.393 44.000 0.00 0.00 0.00 3.21
3414 3794 5.183904 GTCTGCATTAAAAAGGAGGACATGT 59.816 40.000 0.00 0.00 0.00 3.21
3415 3795 5.183713 TCTGCATTAAAAAGGAGGACATGTG 59.816 40.000 1.15 0.00 0.00 3.21
3416 3796 4.832266 TGCATTAAAAAGGAGGACATGTGT 59.168 37.500 1.15 0.00 0.00 3.72
3417 3797 5.304101 TGCATTAAAAAGGAGGACATGTGTT 59.696 36.000 1.15 0.00 0.00 3.32
3418 3798 5.634859 GCATTAAAAAGGAGGACATGTGTTG 59.365 40.000 1.15 0.00 0.00 3.33
3419 3799 3.733443 AAAAAGGAGGACATGTGTTGC 57.267 42.857 1.15 0.00 0.00 4.17
3420 3800 1.620822 AAAGGAGGACATGTGTTGCC 58.379 50.000 1.15 0.00 0.00 4.52
3421 3801 0.606401 AAGGAGGACATGTGTTGCCG 60.606 55.000 1.15 0.00 0.00 5.69
3422 3802 1.302511 GGAGGACATGTGTTGCCGT 60.303 57.895 1.15 0.00 0.00 5.68
3423 3803 1.577328 GGAGGACATGTGTTGCCGTG 61.577 60.000 1.15 0.00 0.00 4.94
3424 3804 2.187599 GAGGACATGTGTTGCCGTGC 62.188 60.000 1.15 0.00 0.00 5.34
3425 3805 2.260869 GGACATGTGTTGCCGTGCT 61.261 57.895 1.15 0.00 0.00 4.40
3426 3806 1.207593 GACATGTGTTGCCGTGCTC 59.792 57.895 1.15 0.00 0.00 4.26
3427 3807 2.187599 GACATGTGTTGCCGTGCTCC 62.188 60.000 1.15 0.00 0.00 4.70
3428 3808 2.112928 ATGTGTTGCCGTGCTCCA 59.887 55.556 0.00 0.00 0.00 3.86
3429 3809 1.528076 ATGTGTTGCCGTGCTCCAA 60.528 52.632 0.00 0.00 0.00 3.53
3430 3810 1.795170 ATGTGTTGCCGTGCTCCAAC 61.795 55.000 0.00 0.00 41.19 3.77
3431 3811 2.124529 TGTTGCCGTGCTCCAACA 60.125 55.556 6.52 6.52 46.32 3.33
3432 3812 1.750780 TGTTGCCGTGCTCCAACAA 60.751 52.632 7.76 0.00 45.74 2.83
3433 3813 1.008538 GTTGCCGTGCTCCAACAAG 60.009 57.895 0.00 0.00 40.66 3.16
3434 3814 1.153066 TTGCCGTGCTCCAACAAGA 60.153 52.632 0.00 0.00 0.00 3.02
3435 3815 0.749818 TTGCCGTGCTCCAACAAGAA 60.750 50.000 0.00 0.00 0.00 2.52
3436 3816 0.749818 TGCCGTGCTCCAACAAGAAA 60.750 50.000 0.00 0.00 0.00 2.52
3437 3817 0.383949 GCCGTGCTCCAACAAGAAAA 59.616 50.000 0.00 0.00 0.00 2.29
3438 3818 1.202359 GCCGTGCTCCAACAAGAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
3439 3819 2.545742 GCCGTGCTCCAACAAGAAAAAT 60.546 45.455 0.00 0.00 0.00 1.82
3440 3820 3.305064 GCCGTGCTCCAACAAGAAAAATA 60.305 43.478 0.00 0.00 0.00 1.40
3441 3821 4.794655 GCCGTGCTCCAACAAGAAAAATAA 60.795 41.667 0.00 0.00 0.00 1.40
3442 3822 5.469479 CCGTGCTCCAACAAGAAAAATAAT 58.531 37.500 0.00 0.00 0.00 1.28
3443 3823 5.345741 CCGTGCTCCAACAAGAAAAATAATG 59.654 40.000 0.00 0.00 0.00 1.90
3444 3824 5.164061 CGTGCTCCAACAAGAAAAATAATGC 60.164 40.000 0.00 0.00 0.00 3.56
3445 3825 5.928264 GTGCTCCAACAAGAAAAATAATGCT 59.072 36.000 0.00 0.00 0.00 3.79
3446 3826 6.424812 GTGCTCCAACAAGAAAAATAATGCTT 59.575 34.615 0.00 0.00 0.00 3.91
3447 3827 6.424509 TGCTCCAACAAGAAAAATAATGCTTG 59.575 34.615 0.00 0.00 42.46 4.01
3448 3828 6.646240 GCTCCAACAAGAAAAATAATGCTTGA 59.354 34.615 0.00 0.00 39.97 3.02
3449 3829 7.171337 GCTCCAACAAGAAAAATAATGCTTGAA 59.829 33.333 0.00 0.00 39.97 2.69
3450 3830 8.954950 TCCAACAAGAAAAATAATGCTTGAAA 57.045 26.923 0.00 0.00 39.97 2.69
3451 3831 9.388506 TCCAACAAGAAAAATAATGCTTGAAAA 57.611 25.926 0.00 0.00 39.97 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.770874 ATGAAACGACCGGCCGGG 62.771 66.667 44.99 31.45 43.62 5.73
178 239 3.047877 CGACCGCTTTTCCCGCTT 61.048 61.111 0.00 0.00 0.00 4.68
307 368 1.001520 CGCCAACCACCGATATGGATA 59.998 52.381 7.25 0.00 43.02 2.59
418 492 5.565592 AAATGAAAATGATCACGCAGCTA 57.434 34.783 0.00 0.00 30.82 3.32
420 494 3.239026 CGAAATGAAAATGATCACGCAGC 59.761 43.478 0.00 0.00 30.82 5.25
423 497 4.402583 TGTCGAAATGAAAATGATCACGC 58.597 39.130 0.00 0.00 30.82 5.34
546 654 1.153647 CGGCCGCACTGATGAACTA 60.154 57.895 14.67 0.00 0.00 2.24
547 655 2.434884 CGGCCGCACTGATGAACT 60.435 61.111 14.67 0.00 0.00 3.01
549 657 2.434185 GTCGGCCGCACTGATGAA 60.434 61.111 23.51 0.00 35.65 2.57
552 660 2.512286 CATGTCGGCCGCACTGAT 60.512 61.111 23.51 7.44 35.65 2.90
592 700 0.108804 TCTCACGTCTCATTTCCCGC 60.109 55.000 0.00 0.00 0.00 6.13
604 712 0.237761 CGAGACGAACCTTCTCACGT 59.762 55.000 0.00 0.00 39.71 4.49
732 840 1.458588 GGGGCAACAACCTTTCCCA 60.459 57.895 0.00 0.00 38.72 4.37
832 943 6.651755 ACAAAAGTATAATTGCATGCAAGC 57.348 33.333 34.15 21.39 39.47 4.01
877 990 1.540118 TACATCTGCCCACCCACCA 60.540 57.895 0.00 0.00 0.00 4.17
1182 1328 2.334946 GCATGAAACAGGGCGCTCA 61.335 57.895 11.40 3.04 0.00 4.26
1183 1329 1.660560 ATGCATGAAACAGGGCGCTC 61.661 55.000 7.64 1.48 0.00 5.03
1241 1399 0.252197 ACTACTCCACCCGCCAAATC 59.748 55.000 0.00 0.00 0.00 2.17
1249 1407 0.763035 ACAACACCACTACTCCACCC 59.237 55.000 0.00 0.00 0.00 4.61
1254 1412 5.989777 ACTATTGTTCACAACACCACTACTC 59.010 40.000 0.00 0.00 41.97 2.59
1322 1634 3.184178 GCAAAACACAAAATGGATCCACG 59.816 43.478 18.99 8.67 0.00 4.94
1371 1683 5.304871 TGATCTTCTCCTTCTCTGATCCATG 59.695 44.000 0.00 0.00 32.00 3.66
1397 1709 3.431912 TCTTCGTGTCGAAATTGATGGTG 59.568 43.478 6.10 0.00 45.23 4.17
1547 1859 0.898320 CCTCCGGCTTCTTCTCTTCA 59.102 55.000 0.00 0.00 0.00 3.02
1578 1890 1.592223 CGGCCGACTTCTTCTCCTT 59.408 57.895 24.07 0.00 0.00 3.36
1709 2030 0.391793 CCTCCGGCTTCTTCTTGTCC 60.392 60.000 0.00 0.00 0.00 4.02
2180 2555 4.269523 ATGGTGCACGCACTGGGT 62.270 61.111 20.65 3.24 45.52 4.51
2196 2571 2.748798 GCTGGCCTGAGAATCACATGAT 60.749 50.000 14.77 0.00 42.56 2.45
2249 2624 0.390124 AAACAACGTGCGGAGAGGTA 59.610 50.000 0.00 0.00 0.00 3.08
2430 2807 8.575589 ACTTTTATTGCCCCAAAAATTGAAATC 58.424 29.630 0.00 0.00 0.00 2.17
2478 2858 3.926821 TTTTTGTATGCCGAAACCCTC 57.073 42.857 0.00 0.00 0.00 4.30
2484 2864 5.178438 GCCTTTTGAATTTTTGTATGCCGAA 59.822 36.000 0.00 0.00 0.00 4.30
2487 2867 5.938438 TGCCTTTTGAATTTTTGTATGCC 57.062 34.783 0.00 0.00 0.00 4.40
2488 2868 8.800231 AATTTGCCTTTTGAATTTTTGTATGC 57.200 26.923 0.00 0.00 0.00 3.14
2512 2892 4.546829 ATTTGCCTAACTAGGTGACGAA 57.453 40.909 4.72 0.00 45.42 3.85
2516 2896 4.020928 TGACGAATTTGCCTAACTAGGTGA 60.021 41.667 4.72 0.00 45.42 4.02
2521 2901 4.546829 AGGTGACGAATTTGCCTAACTA 57.453 40.909 0.00 0.00 0.00 2.24
2522 2902 3.418684 AGGTGACGAATTTGCCTAACT 57.581 42.857 0.00 0.00 0.00 2.24
2523 2903 4.251268 ACTAGGTGACGAATTTGCCTAAC 58.749 43.478 0.00 0.00 32.18 2.34
2524 2904 4.546829 ACTAGGTGACGAATTTGCCTAA 57.453 40.909 0.00 0.00 32.18 2.69
2525 2905 4.546829 AACTAGGTGACGAATTTGCCTA 57.453 40.909 0.00 0.00 0.00 3.93
2526 2906 3.418684 AACTAGGTGACGAATTTGCCT 57.581 42.857 0.00 0.00 0.00 4.75
2527 2907 3.621715 CCTAACTAGGTGACGAATTTGCC 59.378 47.826 0.00 0.00 38.69 4.52
2528 2908 4.859629 CCTAACTAGGTGACGAATTTGC 57.140 45.455 0.00 0.00 38.69 3.68
2540 2920 7.121208 CACTGCTAGTGTCCACCTAACTAGG 62.121 52.000 10.23 0.97 43.77 3.02
2541 2921 4.017808 ACTGCTAGTGTCCACCTAACTAG 58.982 47.826 5.00 5.00 44.07 2.57
2542 2922 3.762288 CACTGCTAGTGTCCACCTAACTA 59.238 47.826 7.80 0.00 41.19 2.24
2543 2923 2.563179 CACTGCTAGTGTCCACCTAACT 59.437 50.000 7.80 0.00 41.19 2.24
2544 2924 2.353803 CCACTGCTAGTGTCCACCTAAC 60.354 54.545 13.06 0.00 44.50 2.34
2545 2925 1.899814 CCACTGCTAGTGTCCACCTAA 59.100 52.381 13.06 0.00 44.50 2.69
2546 2926 1.076513 TCCACTGCTAGTGTCCACCTA 59.923 52.381 13.06 0.00 44.50 3.08
2547 2927 0.178932 TCCACTGCTAGTGTCCACCT 60.179 55.000 13.06 0.00 44.50 4.00
2548 2928 0.685097 TTCCACTGCTAGTGTCCACC 59.315 55.000 13.06 0.00 44.50 4.61
2549 2929 1.941668 GCTTCCACTGCTAGTGTCCAC 60.942 57.143 13.06 0.00 44.50 4.02
2550 2930 0.321671 GCTTCCACTGCTAGTGTCCA 59.678 55.000 13.06 0.00 44.50 4.02
2551 2931 0.391793 GGCTTCCACTGCTAGTGTCC 60.392 60.000 13.06 6.84 44.50 4.02
2552 2932 0.321671 TGGCTTCCACTGCTAGTGTC 59.678 55.000 13.06 2.86 44.50 3.67
2553 2933 2.452116 TGGCTTCCACTGCTAGTGT 58.548 52.632 13.06 0.00 44.50 3.55
2563 2943 1.987855 CTACCCCGAGTGGCTTCCA 60.988 63.158 0.00 0.00 0.00 3.53
2564 2944 1.677637 CTCTACCCCGAGTGGCTTCC 61.678 65.000 0.00 0.00 0.00 3.46
2565 2945 1.817209 CTCTACCCCGAGTGGCTTC 59.183 63.158 0.00 0.00 0.00 3.86
2566 2946 2.359967 GCTCTACCCCGAGTGGCTT 61.360 63.158 0.00 0.00 33.55 4.35
2567 2947 2.760385 GCTCTACCCCGAGTGGCT 60.760 66.667 0.00 0.00 33.55 4.75
2568 2948 4.208686 CGCTCTACCCCGAGTGGC 62.209 72.222 0.00 0.00 37.76 5.01
2569 2949 1.828660 ATCGCTCTACCCCGAGTGG 60.829 63.158 0.00 0.00 40.88 4.00
2570 2950 1.360551 CATCGCTCTACCCCGAGTG 59.639 63.158 0.00 0.00 41.65 3.51
2571 2951 2.491022 GCATCGCTCTACCCCGAGT 61.491 63.158 0.00 0.00 36.86 4.18
2572 2952 2.336809 GCATCGCTCTACCCCGAG 59.663 66.667 0.00 0.00 36.86 4.63
2573 2953 3.592814 CGCATCGCTCTACCCCGA 61.593 66.667 0.00 0.00 37.91 5.14
2574 2954 4.647615 CCGCATCGCTCTACCCCG 62.648 72.222 0.00 0.00 0.00 5.73
2575 2955 3.501458 GACCGCATCGCTCTACCCC 62.501 68.421 0.00 0.00 0.00 4.95
2576 2956 2.027751 GACCGCATCGCTCTACCC 59.972 66.667 0.00 0.00 0.00 3.69
2577 2957 1.299468 CTGACCGCATCGCTCTACC 60.299 63.158 0.00 0.00 0.00 3.18
2578 2958 0.100682 TTCTGACCGCATCGCTCTAC 59.899 55.000 0.00 0.00 0.00 2.59
2579 2959 0.382158 CTTCTGACCGCATCGCTCTA 59.618 55.000 0.00 0.00 0.00 2.43
2580 2960 1.140589 CTTCTGACCGCATCGCTCT 59.859 57.895 0.00 0.00 0.00 4.09
2581 2961 0.458543 TTCTTCTGACCGCATCGCTC 60.459 55.000 0.00 0.00 0.00 5.03
2582 2962 0.037326 TTTCTTCTGACCGCATCGCT 60.037 50.000 0.00 0.00 0.00 4.93
2583 2963 0.371645 CTTTCTTCTGACCGCATCGC 59.628 55.000 0.00 0.00 0.00 4.58
2584 2964 1.923204 CTCTTTCTTCTGACCGCATCG 59.077 52.381 0.00 0.00 0.00 3.84
2585 2965 3.238108 TCTCTTTCTTCTGACCGCATC 57.762 47.619 0.00 0.00 0.00 3.91
2586 2966 3.736433 CGATCTCTTTCTTCTGACCGCAT 60.736 47.826 0.00 0.00 0.00 4.73
2587 2967 2.416027 CGATCTCTTTCTTCTGACCGCA 60.416 50.000 0.00 0.00 0.00 5.69
2588 2968 2.159366 TCGATCTCTTTCTTCTGACCGC 60.159 50.000 0.00 0.00 0.00 5.68
2589 2969 3.127895 AGTCGATCTCTTTCTTCTGACCG 59.872 47.826 0.00 0.00 0.00 4.79
2590 2970 4.712122 AGTCGATCTCTTTCTTCTGACC 57.288 45.455 0.00 0.00 0.00 4.02
2591 2971 5.260140 CGTAGTCGATCTCTTTCTTCTGAC 58.740 45.833 0.00 0.00 39.71 3.51
2592 2972 4.333095 CCGTAGTCGATCTCTTTCTTCTGA 59.667 45.833 0.00 0.00 39.71 3.27
2593 2973 4.496673 CCCGTAGTCGATCTCTTTCTTCTG 60.497 50.000 0.00 0.00 39.71 3.02
2594 2974 3.628487 CCCGTAGTCGATCTCTTTCTTCT 59.372 47.826 0.00 0.00 39.71 2.85
2595 2975 3.792794 GCCCGTAGTCGATCTCTTTCTTC 60.793 52.174 0.00 0.00 39.71 2.87
2596 2976 2.099427 GCCCGTAGTCGATCTCTTTCTT 59.901 50.000 0.00 0.00 39.71 2.52
2597 2977 1.677052 GCCCGTAGTCGATCTCTTTCT 59.323 52.381 0.00 0.00 39.71 2.52
2598 2978 1.404391 TGCCCGTAGTCGATCTCTTTC 59.596 52.381 0.00 0.00 39.71 2.62
2599 2979 1.405821 CTGCCCGTAGTCGATCTCTTT 59.594 52.381 0.00 0.00 39.71 2.52
2600 2980 1.025812 CTGCCCGTAGTCGATCTCTT 58.974 55.000 0.00 0.00 39.71 2.85
2601 2981 0.107116 ACTGCCCGTAGTCGATCTCT 60.107 55.000 0.00 0.00 39.71 3.10
2602 2982 0.308376 GACTGCCCGTAGTCGATCTC 59.692 60.000 0.00 0.00 37.88 2.75
2603 2983 2.406205 GACTGCCCGTAGTCGATCT 58.594 57.895 0.00 0.00 37.88 2.75
2608 2988 1.134560 AGAAATCGACTGCCCGTAGTC 59.865 52.381 3.12 3.12 42.83 2.59
2609 2989 1.183549 AGAAATCGACTGCCCGTAGT 58.816 50.000 0.00 0.00 0.00 2.73
2610 2990 3.431922 TTAGAAATCGACTGCCCGTAG 57.568 47.619 0.00 0.00 0.00 3.51
2611 2991 5.717078 ATATTAGAAATCGACTGCCCGTA 57.283 39.130 0.00 0.00 0.00 4.02
2612 2992 2.981859 ATTAGAAATCGACTGCCCGT 57.018 45.000 0.00 0.00 0.00 5.28
2613 2993 6.253727 GTGATATATTAGAAATCGACTGCCCG 59.746 42.308 0.00 0.00 0.00 6.13
2614 2994 7.324178 AGTGATATATTAGAAATCGACTGCCC 58.676 38.462 0.00 0.00 0.00 5.36
2615 2995 9.291664 GTAGTGATATATTAGAAATCGACTGCC 57.708 37.037 0.00 0.00 0.00 4.85
2616 2996 9.001049 CGTAGTGATATATTAGAAATCGACTGC 57.999 37.037 0.00 0.00 0.00 4.40
2648 3028 1.517694 CCCATTGCAATGCACGAGC 60.518 57.895 30.15 0.00 38.71 5.03
2649 3029 0.742505 ATCCCATTGCAATGCACGAG 59.257 50.000 30.15 17.52 38.71 4.18
2650 3030 2.049888 TATCCCATTGCAATGCACGA 57.950 45.000 30.15 23.59 38.71 4.35
2651 3031 4.502171 TTATATCCCATTGCAATGCACG 57.498 40.909 30.15 19.80 38.71 5.34
2652 3032 9.090692 GAATATTTATATCCCATTGCAATGCAC 57.909 33.333 30.15 3.16 38.71 4.57
2653 3033 8.813951 TGAATATTTATATCCCATTGCAATGCA 58.186 29.630 30.15 20.02 36.47 3.96
2654 3034 9.309516 CTGAATATTTATATCCCATTGCAATGC 57.690 33.333 30.15 13.79 35.08 3.56
2678 3058 9.760660 GCAGTTAAATCTCAAGTTAACATACTG 57.239 33.333 8.61 5.24 44.43 2.74
2679 3059 8.947115 GGCAGTTAAATCTCAAGTTAACATACT 58.053 33.333 8.61 0.00 44.43 2.12
2680 3060 8.182227 GGGCAGTTAAATCTCAAGTTAACATAC 58.818 37.037 8.61 0.00 44.43 2.39
2681 3061 7.065324 CGGGCAGTTAAATCTCAAGTTAACATA 59.935 37.037 8.61 0.00 44.43 2.29
2682 3062 6.128007 CGGGCAGTTAAATCTCAAGTTAACAT 60.128 38.462 8.61 0.00 44.43 2.71
2683 3063 5.180492 CGGGCAGTTAAATCTCAAGTTAACA 59.820 40.000 8.61 0.00 44.43 2.41
2684 3064 5.180680 ACGGGCAGTTAAATCTCAAGTTAAC 59.819 40.000 0.00 0.00 43.08 2.01
2685 3065 5.180492 CACGGGCAGTTAAATCTCAAGTTAA 59.820 40.000 0.00 0.00 0.00 2.01
2686 3066 4.693566 CACGGGCAGTTAAATCTCAAGTTA 59.306 41.667 0.00 0.00 0.00 2.24
2687 3067 3.502211 CACGGGCAGTTAAATCTCAAGTT 59.498 43.478 0.00 0.00 0.00 2.66
2688 3068 3.074412 CACGGGCAGTTAAATCTCAAGT 58.926 45.455 0.00 0.00 0.00 3.16
2689 3069 3.334691 TCACGGGCAGTTAAATCTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
2690 3070 3.410631 TCACGGGCAGTTAAATCTCAA 57.589 42.857 0.00 0.00 0.00 3.02
2691 3071 3.627395 ATCACGGGCAGTTAAATCTCA 57.373 42.857 0.00 0.00 0.00 3.27
2692 3072 4.965119 AAATCACGGGCAGTTAAATCTC 57.035 40.909 0.00 0.00 0.00 2.75
2693 3073 5.250200 TGTAAATCACGGGCAGTTAAATCT 58.750 37.500 0.00 0.00 0.00 2.40
2694 3074 5.554822 TGTAAATCACGGGCAGTTAAATC 57.445 39.130 0.00 0.00 0.00 2.17
2695 3075 6.524101 AATGTAAATCACGGGCAGTTAAAT 57.476 33.333 0.00 0.00 0.00 1.40
2696 3076 5.968528 AATGTAAATCACGGGCAGTTAAA 57.031 34.783 0.00 0.00 0.00 1.52
2697 3077 8.911918 ATATAATGTAAATCACGGGCAGTTAA 57.088 30.769 0.00 0.00 0.00 2.01
2698 3078 8.911918 AATATAATGTAAATCACGGGCAGTTA 57.088 30.769 0.00 0.00 0.00 2.24
2699 3079 7.817418 AATATAATGTAAATCACGGGCAGTT 57.183 32.000 0.00 0.00 0.00 3.16
2700 3080 7.817418 AAATATAATGTAAATCACGGGCAGT 57.183 32.000 0.00 0.00 0.00 4.40
2701 3081 8.349245 TCAAAATATAATGTAAATCACGGGCAG 58.651 33.333 0.00 0.00 0.00 4.85
2702 3082 8.226819 TCAAAATATAATGTAAATCACGGGCA 57.773 30.769 0.00 0.00 0.00 5.36
2703 3083 9.128107 CATCAAAATATAATGTAAATCACGGGC 57.872 33.333 0.00 0.00 0.00 6.13
2750 3130 9.410556 CGAAAATCAATCACCTCAATTTTACTT 57.589 29.630 0.00 0.00 31.58 2.24
2751 3131 8.576442 ACGAAAATCAATCACCTCAATTTTACT 58.424 29.630 0.00 0.00 31.58 2.24
2752 3132 8.742554 ACGAAAATCAATCACCTCAATTTTAC 57.257 30.769 0.00 0.00 31.58 2.01
2962 3342 9.550406 AGAAATGTGATGTTTCATGTTTCATTT 57.450 25.926 13.54 0.00 38.82 2.32
2963 3343 9.550406 AAGAAATGTGATGTTTCATGTTTCATT 57.450 25.926 13.54 0.00 38.82 2.57
2964 3344 9.550406 AAAGAAATGTGATGTTTCATGTTTCAT 57.450 25.926 13.54 0.00 38.82 2.57
2965 3345 8.945481 AAAGAAATGTGATGTTTCATGTTTCA 57.055 26.923 13.54 0.00 38.82 2.69
2968 3348 9.480053 CCTAAAAGAAATGTGATGTTTCATGTT 57.520 29.630 0.00 0.00 37.89 2.71
2969 3349 8.859090 TCCTAAAAGAAATGTGATGTTTCATGT 58.141 29.630 0.00 0.00 37.89 3.21
2970 3350 9.132521 GTCCTAAAAGAAATGTGATGTTTCATG 57.867 33.333 0.00 0.00 37.89 3.07
2971 3351 8.023128 CGTCCTAAAAGAAATGTGATGTTTCAT 58.977 33.333 0.00 0.00 37.89 2.57
2972 3352 7.359595 CGTCCTAAAAGAAATGTGATGTTTCA 58.640 34.615 0.00 0.00 37.89 2.69
2973 3353 6.305638 GCGTCCTAAAAGAAATGTGATGTTTC 59.694 38.462 0.00 0.00 36.15 2.78
2974 3354 6.149633 GCGTCCTAAAAGAAATGTGATGTTT 58.850 36.000 0.00 0.00 0.00 2.83
2975 3355 5.335661 GGCGTCCTAAAAGAAATGTGATGTT 60.336 40.000 0.00 0.00 0.00 2.71
2976 3356 4.156008 GGCGTCCTAAAAGAAATGTGATGT 59.844 41.667 0.00 0.00 0.00 3.06
2977 3357 4.155826 TGGCGTCCTAAAAGAAATGTGATG 59.844 41.667 0.00 0.00 0.00 3.07
2978 3358 4.331968 TGGCGTCCTAAAAGAAATGTGAT 58.668 39.130 0.00 0.00 0.00 3.06
2979 3359 3.745799 TGGCGTCCTAAAAGAAATGTGA 58.254 40.909 0.00 0.00 0.00 3.58
2980 3360 4.497473 TTGGCGTCCTAAAAGAAATGTG 57.503 40.909 0.00 0.00 0.00 3.21
2981 3361 7.122055 TCAATATTGGCGTCCTAAAAGAAATGT 59.878 33.333 15.36 0.00 0.00 2.71
2982 3362 7.479980 TCAATATTGGCGTCCTAAAAGAAATG 58.520 34.615 15.36 0.00 0.00 2.32
2983 3363 7.201821 CCTCAATATTGGCGTCCTAAAAGAAAT 60.202 37.037 15.36 0.00 0.00 2.17
2984 3364 6.094881 CCTCAATATTGGCGTCCTAAAAGAAA 59.905 38.462 15.36 0.00 0.00 2.52
2985 3365 5.588648 CCTCAATATTGGCGTCCTAAAAGAA 59.411 40.000 15.36 0.00 0.00 2.52
2986 3366 5.123227 CCTCAATATTGGCGTCCTAAAAGA 58.877 41.667 15.36 0.00 0.00 2.52
2987 3367 4.275936 CCCTCAATATTGGCGTCCTAAAAG 59.724 45.833 15.36 1.61 0.00 2.27
2988 3368 4.080243 TCCCTCAATATTGGCGTCCTAAAA 60.080 41.667 15.36 0.00 0.00 1.52
2989 3369 3.456644 TCCCTCAATATTGGCGTCCTAAA 59.543 43.478 15.36 0.00 0.00 1.85
2990 3370 3.042682 TCCCTCAATATTGGCGTCCTAA 58.957 45.455 15.36 0.00 0.00 2.69
2991 3371 2.684943 TCCCTCAATATTGGCGTCCTA 58.315 47.619 15.36 0.00 0.00 2.94
2992 3372 1.507140 TCCCTCAATATTGGCGTCCT 58.493 50.000 15.36 0.00 0.00 3.85
2993 3373 1.947456 GTTCCCTCAATATTGGCGTCC 59.053 52.381 15.36 0.00 0.00 4.79
2994 3374 1.597663 CGTTCCCTCAATATTGGCGTC 59.402 52.381 15.36 1.93 0.00 5.19
2995 3375 1.065709 ACGTTCCCTCAATATTGGCGT 60.066 47.619 15.36 12.44 0.00 5.68
2996 3376 1.663695 ACGTTCCCTCAATATTGGCG 58.336 50.000 15.36 11.92 0.00 5.69
2997 3377 2.542595 CGTACGTTCCCTCAATATTGGC 59.457 50.000 15.36 0.00 0.00 4.52
2998 3378 3.128349 CCGTACGTTCCCTCAATATTGG 58.872 50.000 15.21 6.32 0.00 3.16
2999 3379 3.554324 CACCGTACGTTCCCTCAATATTG 59.446 47.826 15.21 9.29 0.00 1.90
3000 3380 3.431207 CCACCGTACGTTCCCTCAATATT 60.431 47.826 15.21 0.00 0.00 1.28
3001 3381 2.101917 CCACCGTACGTTCCCTCAATAT 59.898 50.000 15.21 0.00 0.00 1.28
3002 3382 1.477700 CCACCGTACGTTCCCTCAATA 59.522 52.381 15.21 0.00 0.00 1.90
3003 3383 0.248289 CCACCGTACGTTCCCTCAAT 59.752 55.000 15.21 0.00 0.00 2.57
3004 3384 1.667151 CCACCGTACGTTCCCTCAA 59.333 57.895 15.21 0.00 0.00 3.02
3005 3385 2.277591 CCCACCGTACGTTCCCTCA 61.278 63.158 15.21 0.00 0.00 3.86
3006 3386 1.941999 CTCCCACCGTACGTTCCCTC 61.942 65.000 15.21 0.00 0.00 4.30
3007 3387 1.980772 CTCCCACCGTACGTTCCCT 60.981 63.158 15.21 0.00 0.00 4.20
3008 3388 2.575461 CTCCCACCGTACGTTCCC 59.425 66.667 15.21 0.00 0.00 3.97
3009 3389 2.125793 GCTCCCACCGTACGTTCC 60.126 66.667 15.21 0.00 0.00 3.62
3010 3390 2.125793 GGCTCCCACCGTACGTTC 60.126 66.667 15.21 0.00 0.00 3.95
3011 3391 3.698820 GGGCTCCCACCGTACGTT 61.699 66.667 15.21 0.00 35.81 3.99
3012 3392 4.691359 AGGGCTCCCACCGTACGT 62.691 66.667 15.21 0.00 38.92 3.57
3013 3393 3.366739 GAAGGGCTCCCACCGTACG 62.367 68.421 8.69 8.69 38.92 3.67
3014 3394 2.582978 GAAGGGCTCCCACCGTAC 59.417 66.667 7.82 0.00 38.92 3.67
3015 3395 2.686106 GGAAGGGCTCCCACCGTA 60.686 66.667 7.82 0.00 38.44 4.02
3022 3402 3.787001 CGGTCTGGGAAGGGCTCC 61.787 72.222 0.00 0.00 44.54 4.70
3023 3403 2.291043 TTCGGTCTGGGAAGGGCTC 61.291 63.158 0.00 0.00 0.00 4.70
3024 3404 2.203938 TTCGGTCTGGGAAGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
3025 3405 2.046217 GTTCGGTCTGGGAAGGGC 60.046 66.667 0.00 0.00 0.00 5.19
3026 3406 1.823169 TTCGTTCGGTCTGGGAAGGG 61.823 60.000 0.00 0.00 31.92 3.95
3027 3407 0.249398 ATTCGTTCGGTCTGGGAAGG 59.751 55.000 0.00 0.00 0.00 3.46
3028 3408 1.204941 AGATTCGTTCGGTCTGGGAAG 59.795 52.381 0.00 0.00 0.00 3.46
3029 3409 1.263356 AGATTCGTTCGGTCTGGGAA 58.737 50.000 0.00 0.00 0.00 3.97
3030 3410 1.263356 AAGATTCGTTCGGTCTGGGA 58.737 50.000 0.00 0.00 0.00 4.37
3031 3411 2.000447 GAAAGATTCGTTCGGTCTGGG 59.000 52.381 0.00 0.00 0.00 4.45
3032 3412 2.000447 GGAAAGATTCGTTCGGTCTGG 59.000 52.381 6.30 0.00 0.00 3.86
3033 3413 2.000447 GGGAAAGATTCGTTCGGTCTG 59.000 52.381 6.30 0.00 0.00 3.51
3034 3414 1.066358 GGGGAAAGATTCGTTCGGTCT 60.066 52.381 6.30 0.00 0.00 3.85
3035 3415 1.338389 TGGGGAAAGATTCGTTCGGTC 60.338 52.381 6.30 0.60 0.00 4.79
3036 3416 0.688487 TGGGGAAAGATTCGTTCGGT 59.312 50.000 6.30 0.00 0.00 4.69
3037 3417 1.737793 CTTGGGGAAAGATTCGTTCGG 59.262 52.381 6.30 0.00 38.24 4.30
3038 3418 1.737793 CCTTGGGGAAAGATTCGTTCG 59.262 52.381 6.30 0.00 38.24 3.95
3039 3419 1.472878 GCCTTGGGGAAAGATTCGTTC 59.527 52.381 4.00 4.00 38.24 3.95
3040 3420 1.203001 TGCCTTGGGGAAAGATTCGTT 60.203 47.619 0.00 0.00 38.24 3.85
3041 3421 0.404040 TGCCTTGGGGAAAGATTCGT 59.596 50.000 0.00 0.00 38.24 3.85
3042 3422 1.098050 CTGCCTTGGGGAAAGATTCG 58.902 55.000 0.00 0.00 38.24 3.34
3043 3423 1.478631 CCTGCCTTGGGGAAAGATTC 58.521 55.000 0.00 0.00 38.24 2.52
3044 3424 0.041684 CCCTGCCTTGGGGAAAGATT 59.958 55.000 0.00 0.00 46.50 2.40
3045 3425 1.699752 CCCTGCCTTGGGGAAAGAT 59.300 57.895 0.00 0.00 46.50 2.40
3046 3426 3.180282 CCCTGCCTTGGGGAAAGA 58.820 61.111 0.00 0.00 46.50 2.52
3053 3433 1.915078 ATCGTTCCTCCCTGCCTTGG 61.915 60.000 0.00 0.00 0.00 3.61
3054 3434 0.462759 GATCGTTCCTCCCTGCCTTG 60.463 60.000 0.00 0.00 0.00 3.61
3055 3435 1.908483 GATCGTTCCTCCCTGCCTT 59.092 57.895 0.00 0.00 0.00 4.35
3056 3436 2.427245 CGATCGTTCCTCCCTGCCT 61.427 63.158 7.03 0.00 0.00 4.75
3057 3437 1.956629 TTCGATCGTTCCTCCCTGCC 61.957 60.000 15.94 0.00 0.00 4.85
3058 3438 0.806492 GTTCGATCGTTCCTCCCTGC 60.806 60.000 15.94 0.00 0.00 4.85
3059 3439 0.530744 TGTTCGATCGTTCCTCCCTG 59.469 55.000 15.94 0.00 0.00 4.45
3060 3440 1.263356 TTGTTCGATCGTTCCTCCCT 58.737 50.000 15.94 0.00 0.00 4.20
3061 3441 2.311124 ATTGTTCGATCGTTCCTCCC 57.689 50.000 15.94 0.00 0.00 4.30
3062 3442 4.260334 GAAATTGTTCGATCGTTCCTCC 57.740 45.455 15.94 0.00 0.00 4.30
3074 3454 3.813166 TCCCACTCAGAACGAAATTGTTC 59.187 43.478 5.54 5.54 46.78 3.18
3075 3455 3.815401 CTCCCACTCAGAACGAAATTGTT 59.185 43.478 0.00 0.00 34.02 2.83
3076 3456 3.403038 CTCCCACTCAGAACGAAATTGT 58.597 45.455 0.00 0.00 0.00 2.71
3077 3457 2.744202 CCTCCCACTCAGAACGAAATTG 59.256 50.000 0.00 0.00 0.00 2.32
3078 3458 2.876079 GCCTCCCACTCAGAACGAAATT 60.876 50.000 0.00 0.00 0.00 1.82
3079 3459 1.339151 GCCTCCCACTCAGAACGAAAT 60.339 52.381 0.00 0.00 0.00 2.17
3080 3460 0.034896 GCCTCCCACTCAGAACGAAA 59.965 55.000 0.00 0.00 0.00 3.46
3081 3461 1.671742 GCCTCCCACTCAGAACGAA 59.328 57.895 0.00 0.00 0.00 3.85
3082 3462 2.283529 GGCCTCCCACTCAGAACGA 61.284 63.158 0.00 0.00 0.00 3.85
3083 3463 2.232298 GAGGCCTCCCACTCAGAACG 62.232 65.000 23.19 0.00 33.95 3.95
3084 3464 1.599576 GAGGCCTCCCACTCAGAAC 59.400 63.158 23.19 0.00 33.95 3.01
3085 3465 1.613630 GGAGGCCTCCCACTCAGAA 60.614 63.158 38.25 0.00 43.94 3.02
3086 3466 2.039624 GGAGGCCTCCCACTCAGA 59.960 66.667 38.25 0.00 43.94 3.27
3095 3475 4.388499 TTCGCGTTGGGAGGCCTC 62.388 66.667 25.59 25.59 33.19 4.70
3096 3476 4.699522 GTTCGCGTTGGGAGGCCT 62.700 66.667 3.86 3.86 33.19 5.19
3098 3478 2.975799 TTGTTCGCGTTGGGAGGC 60.976 61.111 5.77 0.00 0.00 4.70
3099 3479 2.613506 GGTTGTTCGCGTTGGGAGG 61.614 63.158 5.77 0.00 0.00 4.30
3100 3480 1.164041 AAGGTTGTTCGCGTTGGGAG 61.164 55.000 5.77 0.00 0.00 4.30
3101 3481 0.106335 TAAGGTTGTTCGCGTTGGGA 59.894 50.000 5.77 0.00 0.00 4.37
3102 3482 1.135803 CATAAGGTTGTTCGCGTTGGG 60.136 52.381 5.77 0.00 0.00 4.12
3103 3483 1.533731 ACATAAGGTTGTTCGCGTTGG 59.466 47.619 5.77 0.00 0.00 3.77
3104 3484 2.720590 CGACATAAGGTTGTTCGCGTTG 60.721 50.000 5.77 0.00 0.00 4.10
3105 3485 1.458064 CGACATAAGGTTGTTCGCGTT 59.542 47.619 5.77 0.00 0.00 4.84
3106 3486 1.065358 CGACATAAGGTTGTTCGCGT 58.935 50.000 5.77 0.00 0.00 6.01
3107 3487 0.247145 GCGACATAAGGTTGTTCGCG 60.247 55.000 0.00 0.00 36.87 5.87
3108 3488 1.076332 AGCGACATAAGGTTGTTCGC 58.924 50.000 6.17 6.17 41.79 4.70
3109 3489 2.222508 CGAAGCGACATAAGGTTGTTCG 60.223 50.000 0.00 0.00 37.70 3.95
3110 3490 2.735134 ACGAAGCGACATAAGGTTGTTC 59.265 45.455 0.00 0.00 33.06 3.18
3111 3491 2.478894 CACGAAGCGACATAAGGTTGTT 59.521 45.455 0.00 0.00 33.06 2.83
3112 3492 2.066262 CACGAAGCGACATAAGGTTGT 58.934 47.619 0.00 0.00 33.06 3.32
3113 3493 1.201921 GCACGAAGCGACATAAGGTTG 60.202 52.381 0.00 0.00 0.00 3.77
3114 3494 1.076332 GCACGAAGCGACATAAGGTT 58.924 50.000 0.00 0.00 0.00 3.50
3115 3495 2.750815 GCACGAAGCGACATAAGGT 58.249 52.632 0.00 0.00 0.00 3.50
3125 3505 1.234615 TTGGCCTGTTAGCACGAAGC 61.235 55.000 3.32 0.00 46.19 3.86
3126 3506 1.069227 GTTTGGCCTGTTAGCACGAAG 60.069 52.381 3.32 0.00 0.00 3.79
3127 3507 0.948678 GTTTGGCCTGTTAGCACGAA 59.051 50.000 3.32 0.00 0.00 3.85
3128 3508 0.179043 TGTTTGGCCTGTTAGCACGA 60.179 50.000 3.32 0.00 0.00 4.35
3129 3509 0.881118 ATGTTTGGCCTGTTAGCACG 59.119 50.000 3.32 0.00 0.00 5.34
3130 3510 1.669795 GCATGTTTGGCCTGTTAGCAC 60.670 52.381 3.32 0.00 0.00 4.40
3131 3511 0.602562 GCATGTTTGGCCTGTTAGCA 59.397 50.000 3.32 0.00 0.00 3.49
3132 3512 3.423848 GCATGTTTGGCCTGTTAGC 57.576 52.632 3.32 0.00 0.00 3.09
3141 3521 3.979101 ACCTTAAATGGGCATGTTTGG 57.021 42.857 0.00 0.00 0.00 3.28
3142 3522 4.754322 GGTACCTTAAATGGGCATGTTTG 58.246 43.478 4.06 0.00 0.00 2.93
3177 3557 9.549078 TCAGTTTTTAGTTGGTTTTCTGTTTTT 57.451 25.926 0.00 0.00 0.00 1.94
3178 3558 9.203421 CTCAGTTTTTAGTTGGTTTTCTGTTTT 57.797 29.630 0.00 0.00 0.00 2.43
3179 3559 8.581578 TCTCAGTTTTTAGTTGGTTTTCTGTTT 58.418 29.630 0.00 0.00 0.00 2.83
3180 3560 8.117813 TCTCAGTTTTTAGTTGGTTTTCTGTT 57.882 30.769 0.00 0.00 0.00 3.16
3181 3561 7.696992 TCTCAGTTTTTAGTTGGTTTTCTGT 57.303 32.000 0.00 0.00 0.00 3.41
3182 3562 8.980143 TTTCTCAGTTTTTAGTTGGTTTTCTG 57.020 30.769 0.00 0.00 0.00 3.02
3183 3563 9.990360 TTTTTCTCAGTTTTTAGTTGGTTTTCT 57.010 25.926 0.00 0.00 0.00 2.52
3207 3587 9.843334 TCGTGTGATTTTTACTGTAAAGTTTTT 57.157 25.926 12.30 0.00 0.00 1.94
3208 3588 9.843334 TTCGTGTGATTTTTACTGTAAAGTTTT 57.157 25.926 12.30 0.87 0.00 2.43
3209 3589 9.843334 TTTCGTGTGATTTTTACTGTAAAGTTT 57.157 25.926 12.30 0.00 0.00 2.66
3211 3591 9.659830 GATTTCGTGTGATTTTTACTGTAAAGT 57.340 29.630 12.30 6.55 0.00 2.66
3212 3592 9.878599 AGATTTCGTGTGATTTTTACTGTAAAG 57.121 29.630 12.30 0.47 0.00 1.85
3215 3595 9.917129 TCTAGATTTCGTGTGATTTTTACTGTA 57.083 29.630 0.00 0.00 0.00 2.74
3216 3596 8.709646 GTCTAGATTTCGTGTGATTTTTACTGT 58.290 33.333 0.00 0.00 0.00 3.55
3217 3597 8.708742 TGTCTAGATTTCGTGTGATTTTTACTG 58.291 33.333 0.00 0.00 0.00 2.74
3218 3598 8.827177 TGTCTAGATTTCGTGTGATTTTTACT 57.173 30.769 0.00 0.00 0.00 2.24
3219 3599 9.530129 CTTGTCTAGATTTCGTGTGATTTTTAC 57.470 33.333 0.00 0.00 0.00 2.01
3220 3600 9.268268 ACTTGTCTAGATTTCGTGTGATTTTTA 57.732 29.630 0.00 0.00 0.00 1.52
3221 3601 8.154649 ACTTGTCTAGATTTCGTGTGATTTTT 57.845 30.769 0.00 0.00 0.00 1.94
3222 3602 7.730364 ACTTGTCTAGATTTCGTGTGATTTT 57.270 32.000 0.00 0.00 0.00 1.82
3223 3603 7.441157 TGAACTTGTCTAGATTTCGTGTGATTT 59.559 33.333 0.00 0.00 0.00 2.17
3224 3604 6.929049 TGAACTTGTCTAGATTTCGTGTGATT 59.071 34.615 0.00 0.00 0.00 2.57
3225 3605 6.455647 TGAACTTGTCTAGATTTCGTGTGAT 58.544 36.000 0.00 0.00 0.00 3.06
3226 3606 5.838529 TGAACTTGTCTAGATTTCGTGTGA 58.161 37.500 0.00 0.00 0.00 3.58
3227 3607 6.712241 ATGAACTTGTCTAGATTTCGTGTG 57.288 37.500 0.00 0.00 0.00 3.82
3228 3608 9.737427 CTATATGAACTTGTCTAGATTTCGTGT 57.263 33.333 0.00 0.37 0.00 4.49
3229 3609 9.952188 TCTATATGAACTTGTCTAGATTTCGTG 57.048 33.333 0.00 0.00 0.00 4.35
3282 3662 9.938280 CAATTTTATCATCTAATCCATGGCAAT 57.062 29.630 6.96 0.00 0.00 3.56
3283 3663 7.874016 GCAATTTTATCATCTAATCCATGGCAA 59.126 33.333 6.96 0.00 0.00 4.52
3284 3664 7.015389 TGCAATTTTATCATCTAATCCATGGCA 59.985 33.333 6.96 0.00 0.00 4.92
3285 3665 7.330208 GTGCAATTTTATCATCTAATCCATGGC 59.670 37.037 6.96 0.00 0.00 4.40
3286 3666 8.582437 AGTGCAATTTTATCATCTAATCCATGG 58.418 33.333 4.97 4.97 0.00 3.66
3287 3667 9.406828 CAGTGCAATTTTATCATCTAATCCATG 57.593 33.333 0.00 0.00 0.00 3.66
3288 3668 9.139734 ACAGTGCAATTTTATCATCTAATCCAT 57.860 29.630 0.00 0.00 0.00 3.41
3289 3669 8.523915 ACAGTGCAATTTTATCATCTAATCCA 57.476 30.769 0.00 0.00 0.00 3.41
3320 3700 9.490663 CTTTTGTTTGTGTTGTTGTTTTAACAA 57.509 25.926 4.02 4.02 45.88 2.83
3321 3701 8.665685 ACTTTTGTTTGTGTTGTTGTTTTAACA 58.334 25.926 0.00 0.00 37.08 2.41
3324 3704 8.477709 CGTACTTTTGTTTGTGTTGTTGTTTTA 58.522 29.630 0.00 0.00 0.00 1.52
3325 3705 7.010275 ACGTACTTTTGTTTGTGTTGTTGTTTT 59.990 29.630 0.00 0.00 0.00 2.43
3326 3706 6.476053 ACGTACTTTTGTTTGTGTTGTTGTTT 59.524 30.769 0.00 0.00 0.00 2.83
3327 3707 5.978322 ACGTACTTTTGTTTGTGTTGTTGTT 59.022 32.000 0.00 0.00 0.00 2.83
3328 3708 5.521544 ACGTACTTTTGTTTGTGTTGTTGT 58.478 33.333 0.00 0.00 0.00 3.32
3329 3709 6.577800 TGTACGTACTTTTGTTTGTGTTGTTG 59.422 34.615 25.12 0.00 0.00 3.33
3330 3710 6.666417 TGTACGTACTTTTGTTTGTGTTGTT 58.334 32.000 25.12 0.00 0.00 2.83
3331 3711 6.238610 TGTACGTACTTTTGTTTGTGTTGT 57.761 33.333 25.12 0.00 0.00 3.32
3332 3712 6.290851 GCATGTACGTACTTTTGTTTGTGTTG 60.291 38.462 25.12 5.30 0.00 3.33
3333 3713 5.740099 GCATGTACGTACTTTTGTTTGTGTT 59.260 36.000 25.12 0.00 0.00 3.32
3334 3714 5.267776 GCATGTACGTACTTTTGTTTGTGT 58.732 37.500 25.12 0.00 0.00 3.72
3335 3715 4.673311 GGCATGTACGTACTTTTGTTTGTG 59.327 41.667 25.12 11.12 0.00 3.33
3336 3716 4.335874 TGGCATGTACGTACTTTTGTTTGT 59.664 37.500 25.12 0.00 0.00 2.83
3337 3717 4.849883 TGGCATGTACGTACTTTTGTTTG 58.150 39.130 25.12 12.27 0.00 2.93
3338 3718 5.239744 TCATGGCATGTACGTACTTTTGTTT 59.760 36.000 25.62 3.88 0.00 2.83
3339 3719 4.757657 TCATGGCATGTACGTACTTTTGTT 59.242 37.500 25.62 5.28 0.00 2.83
3340 3720 4.153475 GTCATGGCATGTACGTACTTTTGT 59.847 41.667 25.62 5.88 0.00 2.83
3341 3721 4.153296 TGTCATGGCATGTACGTACTTTTG 59.847 41.667 25.62 19.40 0.00 2.44
3342 3722 4.320023 TGTCATGGCATGTACGTACTTTT 58.680 39.130 25.62 8.67 0.00 2.27
3343 3723 3.932710 CTGTCATGGCATGTACGTACTTT 59.067 43.478 25.62 11.08 0.00 2.66
3344 3724 3.194755 TCTGTCATGGCATGTACGTACTT 59.805 43.478 25.62 16.95 0.00 2.24
3345 3725 2.758423 TCTGTCATGGCATGTACGTACT 59.242 45.455 25.62 9.27 0.00 2.73
3346 3726 3.116300 CTCTGTCATGGCATGTACGTAC 58.884 50.000 25.62 18.90 0.00 3.67
3347 3727 2.481276 GCTCTGTCATGGCATGTACGTA 60.481 50.000 25.62 13.17 0.00 3.57
3348 3728 1.740380 GCTCTGTCATGGCATGTACGT 60.740 52.381 25.62 0.00 0.00 3.57
3349 3729 0.933097 GCTCTGTCATGGCATGTACG 59.067 55.000 25.62 14.90 0.00 3.67
3350 3730 1.667724 GTGCTCTGTCATGGCATGTAC 59.332 52.381 25.62 20.96 38.27 2.90
3351 3731 1.278699 TGTGCTCTGTCATGGCATGTA 59.721 47.619 25.62 15.42 38.27 2.29
3352 3732 0.037160 TGTGCTCTGTCATGGCATGT 59.963 50.000 25.62 0.00 38.27 3.21
3353 3733 1.135489 GTTGTGCTCTGTCATGGCATG 60.135 52.381 21.42 21.42 38.27 4.06
3354 3734 1.171308 GTTGTGCTCTGTCATGGCAT 58.829 50.000 0.00 0.00 38.27 4.40
3355 3735 0.109153 AGTTGTGCTCTGTCATGGCA 59.891 50.000 0.00 0.00 0.00 4.92
3356 3736 2.005451 CTAGTTGTGCTCTGTCATGGC 58.995 52.381 0.00 0.00 0.00 4.40
3357 3737 2.005451 GCTAGTTGTGCTCTGTCATGG 58.995 52.381 0.00 0.00 0.00 3.66
3358 3738 2.691927 TGCTAGTTGTGCTCTGTCATG 58.308 47.619 0.00 0.00 0.00 3.07
3359 3739 3.407424 TTGCTAGTTGTGCTCTGTCAT 57.593 42.857 0.00 0.00 0.00 3.06
3360 3740 2.908688 TTGCTAGTTGTGCTCTGTCA 57.091 45.000 0.00 0.00 0.00 3.58
3361 3741 4.756084 ATTTTGCTAGTTGTGCTCTGTC 57.244 40.909 0.00 0.00 0.00 3.51
3362 3742 5.520376 AAATTTTGCTAGTTGTGCTCTGT 57.480 34.783 0.00 0.00 0.00 3.41
3363 3743 5.978919 TGAAAATTTTGCTAGTTGTGCTCTG 59.021 36.000 8.47 0.00 0.00 3.35
3364 3744 6.147864 TGAAAATTTTGCTAGTTGTGCTCT 57.852 33.333 8.47 0.00 0.00 4.09
3365 3745 6.128742 CCATGAAAATTTTGCTAGTTGTGCTC 60.129 38.462 8.47 0.00 0.00 4.26
3366 3746 5.697633 CCATGAAAATTTTGCTAGTTGTGCT 59.302 36.000 8.47 0.00 0.00 4.40
3367 3747 5.466393 ACCATGAAAATTTTGCTAGTTGTGC 59.534 36.000 8.47 0.00 0.00 4.57
3368 3748 6.925165 AGACCATGAAAATTTTGCTAGTTGTG 59.075 34.615 8.47 0.00 0.00 3.33
3369 3749 6.925165 CAGACCATGAAAATTTTGCTAGTTGT 59.075 34.615 8.47 0.00 0.00 3.32
3370 3750 6.128742 GCAGACCATGAAAATTTTGCTAGTTG 60.129 38.462 8.47 0.56 0.00 3.16
3371 3751 5.928264 GCAGACCATGAAAATTTTGCTAGTT 59.072 36.000 8.47 0.00 0.00 2.24
3372 3752 5.010922 TGCAGACCATGAAAATTTTGCTAGT 59.989 36.000 8.47 0.68 0.00 2.57
3373 3753 5.472148 TGCAGACCATGAAAATTTTGCTAG 58.528 37.500 8.47 0.00 0.00 3.42
3374 3754 5.465532 TGCAGACCATGAAAATTTTGCTA 57.534 34.783 8.47 0.00 0.00 3.49
3375 3755 4.339872 TGCAGACCATGAAAATTTTGCT 57.660 36.364 8.47 0.00 0.00 3.91
3376 3756 5.616488 AATGCAGACCATGAAAATTTTGC 57.384 34.783 8.47 4.23 33.49 3.68
3377 3757 9.947669 TTTTTAATGCAGACCATGAAAATTTTG 57.052 25.926 8.47 0.00 41.64 2.44
3379 3759 8.785946 CCTTTTTAATGCAGACCATGAAAATTT 58.214 29.630 0.00 0.00 41.64 1.82
3380 3760 8.156165 TCCTTTTTAATGCAGACCATGAAAATT 58.844 29.630 0.00 0.00 41.64 1.82
3381 3761 7.678837 TCCTTTTTAATGCAGACCATGAAAAT 58.321 30.769 0.00 0.00 41.64 1.82
3382 3762 7.060383 TCCTTTTTAATGCAGACCATGAAAA 57.940 32.000 0.00 0.00 40.79 2.29
3383 3763 6.295236 CCTCCTTTTTAATGCAGACCATGAAA 60.295 38.462 0.00 0.00 33.34 2.69
3384 3764 5.185635 CCTCCTTTTTAATGCAGACCATGAA 59.814 40.000 0.00 0.00 33.49 2.57
3385 3765 4.706476 CCTCCTTTTTAATGCAGACCATGA 59.294 41.667 0.00 0.00 33.49 3.07
3386 3766 4.706476 TCCTCCTTTTTAATGCAGACCATG 59.294 41.667 0.00 0.00 33.49 3.66
3387 3767 4.706962 GTCCTCCTTTTTAATGCAGACCAT 59.293 41.667 0.00 0.00 35.06 3.55
3388 3768 4.079253 GTCCTCCTTTTTAATGCAGACCA 58.921 43.478 0.00 0.00 0.00 4.02
3389 3769 4.079253 TGTCCTCCTTTTTAATGCAGACC 58.921 43.478 0.00 0.00 0.00 3.85
3390 3770 5.183904 ACATGTCCTCCTTTTTAATGCAGAC 59.816 40.000 0.00 0.00 0.00 3.51
3391 3771 5.183713 CACATGTCCTCCTTTTTAATGCAGA 59.816 40.000 0.00 0.00 0.00 4.26
3392 3772 5.047802 ACACATGTCCTCCTTTTTAATGCAG 60.048 40.000 0.00 0.00 0.00 4.41
3393 3773 4.832266 ACACATGTCCTCCTTTTTAATGCA 59.168 37.500 0.00 0.00 0.00 3.96
3394 3774 5.391312 ACACATGTCCTCCTTTTTAATGC 57.609 39.130 0.00 0.00 0.00 3.56
3395 3775 5.634859 GCAACACATGTCCTCCTTTTTAATG 59.365 40.000 0.00 0.00 0.00 1.90
3396 3776 5.279456 GGCAACACATGTCCTCCTTTTTAAT 60.279 40.000 0.00 0.00 0.00 1.40
3397 3777 4.038642 GGCAACACATGTCCTCCTTTTTAA 59.961 41.667 0.00 0.00 0.00 1.52
3398 3778 3.572255 GGCAACACATGTCCTCCTTTTTA 59.428 43.478 0.00 0.00 0.00 1.52
3399 3779 2.365293 GGCAACACATGTCCTCCTTTTT 59.635 45.455 0.00 0.00 0.00 1.94
3400 3780 1.963515 GGCAACACATGTCCTCCTTTT 59.036 47.619 0.00 0.00 0.00 2.27
3401 3781 1.620822 GGCAACACATGTCCTCCTTT 58.379 50.000 0.00 0.00 0.00 3.11
3402 3782 0.606401 CGGCAACACATGTCCTCCTT 60.606 55.000 0.00 0.00 0.00 3.36
3403 3783 1.003355 CGGCAACACATGTCCTCCT 60.003 57.895 0.00 0.00 0.00 3.69
3404 3784 1.302511 ACGGCAACACATGTCCTCC 60.303 57.895 0.00 0.00 0.00 4.30
3405 3785 1.868997 CACGGCAACACATGTCCTC 59.131 57.895 0.00 0.00 0.00 3.71
3406 3786 2.260869 GCACGGCAACACATGTCCT 61.261 57.895 0.00 0.00 0.00 3.85
3407 3787 2.187599 GAGCACGGCAACACATGTCC 62.188 60.000 0.00 0.00 0.00 4.02
3408 3788 1.207593 GAGCACGGCAACACATGTC 59.792 57.895 0.00 0.00 0.00 3.06
3409 3789 2.260869 GGAGCACGGCAACACATGT 61.261 57.895 0.00 0.00 0.00 3.21
3410 3790 1.794151 TTGGAGCACGGCAACACATG 61.794 55.000 0.00 0.00 0.00 3.21
3411 3791 1.528076 TTGGAGCACGGCAACACAT 60.528 52.632 0.00 0.00 0.00 3.21
3412 3792 2.124529 TTGGAGCACGGCAACACA 60.125 55.556 0.00 0.00 0.00 3.72
3413 3793 1.999071 TTGTTGGAGCACGGCAACAC 61.999 55.000 0.00 0.00 37.29 3.32
3414 3794 1.723608 CTTGTTGGAGCACGGCAACA 61.724 55.000 0.00 0.00 35.99 3.33
3415 3795 1.008538 CTTGTTGGAGCACGGCAAC 60.009 57.895 0.00 0.00 0.00 4.17
3416 3796 0.749818 TTCTTGTTGGAGCACGGCAA 60.750 50.000 0.00 0.00 0.00 4.52
3417 3797 0.749818 TTTCTTGTTGGAGCACGGCA 60.750 50.000 0.00 0.00 0.00 5.69
3418 3798 0.383949 TTTTCTTGTTGGAGCACGGC 59.616 50.000 0.00 0.00 0.00 5.68
3419 3799 2.861462 TTTTTCTTGTTGGAGCACGG 57.139 45.000 0.00 0.00 0.00 4.94
3420 3800 5.164061 GCATTATTTTTCTTGTTGGAGCACG 60.164 40.000 0.00 0.00 0.00 5.34
3421 3801 5.928264 AGCATTATTTTTCTTGTTGGAGCAC 59.072 36.000 0.00 0.00 0.00 4.40
3422 3802 6.100404 AGCATTATTTTTCTTGTTGGAGCA 57.900 33.333 0.00 0.00 0.00 4.26
3423 3803 6.646240 TCAAGCATTATTTTTCTTGTTGGAGC 59.354 34.615 0.00 0.00 37.68 4.70
3424 3804 8.592105 TTCAAGCATTATTTTTCTTGTTGGAG 57.408 30.769 0.00 0.00 37.68 3.86
3425 3805 8.954950 TTTCAAGCATTATTTTTCTTGTTGGA 57.045 26.923 0.00 0.00 37.68 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.