>input_sequence_50680
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-------------------------------------------------------------------------CTGCCAC
GTCATCTCATCAAGATGACCACAAGTGTGA--TGCTGCACTGCAACAATGAAAGTTCGTGCCGTAATATATTTCTT----
------------------AGAATCCCCTATATATATATATTCCCTCTTCCTTTT-GTGGCAACTCGGCCATTAAACGTTC
GTTGGAGGT--CGC-----CTCAGCTCCAGCCATGGCAGAGAAGGTGTGAGCGCCCTGTTTCATG----CATACAT----
GCTTACCTTCATCTGCATGCGTGC----ATGCATGGTTGATTTGGCGGGTGGAGTAGTGGTGTTGTGA------------
--------------------------------------------------------------------------------
---------------------------------------------ACAATAGTCAAGTACTCGATTTAATTTTGTCA---
--------------AATTAACCCTGTAATACGACGTGGATCCATTTTGTGTTTTGCTTATTGACTTCGATGCAATTAACA
TCCATGGATCAGAGAAGGAGAAGATCAGCACCATCAATTTCGACACGAAGAAAAACACGGTGACCGTCTCCGGTCCGTTC
GACCCGGTGAAGCTGTCCAAGAAGCTGCGATGCAAGGCCTGCAAGGCGATCAAGGACATCAAGATCGTCGAAGAGAAGAA
GCCCGATGCCAAGAAGCCTGAAGAGAAGAAGCCGGAGGAGAAGAAGCCCAAGGAGAAGAAGTCGGCCGCCGATGGCTGCA
AGTGCTGCTGCAAGAAGCCCGACGAGAAGAAGCCGGATGAGAAGAAGAAGCCCGACGAGAAGAAGCCGGAGGAAAAGAAG
---AAACCC------GACGAGAAGAAGCCGGACAAGAAGAAGCCGGAGGAGAAGCCGAAGCCCAAGGAGGAACCCAAA--
-------CCAGCCGCGCCGTCGACGACGGTGAACCTGCAGTTCACGCAGATCTGCAACCTCTGCTACCCGTGGCCATGCA
GCGACCCGAGCCACTGGGGAGGCGTGCATCAGTACCCGCATCCC---CAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCGTACCCCGCCCCCCACCACCCTCA---------------GCA---------------CCCGCCCTGGGCGGCGCC
GGCGACCCCGAAGAGGCAGCCGTGCGGAGGCCCGGCGTACTGCGGAGGAGGGTGCGGCTCGTGCGGCGGCG---------
---GCGGGTACGGGGCGTGGCCGCCGCCGATGCCGACGCCGCTGCAGATGATGCAGCCCCCGCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCACCCAG
TGCGTGCACCATCATGTGATTCTCAGGCCAGCGACCGTTCGTGCATGCATGCATGCGCTGTTCTACCTCTCCGCACGTTG
TTTTTCGTGGT--TCGACCGATGTTCAATATTTGCCATGTATGTTTCGTGCACAGTACTGCATTTGTTTATGTCTATATC
CGCAGCAAAGAAGGTGTAGCTGCCACGTGCAATTTTCAGTGTGAAAATAGATGCTCTCGGAACAATTGATGTAGCTTTTT
ATAGATGAT---TTCAATTTTTGGGGCAATAAAAGTTCGGAAATGCT---------------------------------
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>chr2D_1_TraesCS2D01G102400
TGTTACAAACACAAAACATACCCGGCCGGTCGTTTCATTCTGTGATGACA-----------CCACCTCGGCTGCACCTCG
GTCCACTCCGTCACCTCGCCGAAGCCAAATCCGGCGAGCTGCCGCGGCCAGTCCACCATCGTTCGCCGTGGCCGCCTCAC
A-------------------------------------------------GCGCTTGGGGATGGTGCATGACCGCAGCAA
GCGGGAAAAGCGGTCGCCCGTCTCATGGCAAATGCACGTTAATCAGTTATCAGTATAGCAAACAACCCAGGTCACAAGAA
AGATGCTCCACGACATGCTCTCCCCCGGTTTGCAGTACCTTGCCGCCTA----TCCATATCGGTGGTTGGCGACGATCCA
ATCGTACATGCCAGCCAGCTGATCATTTCGACATAGCTGTCGTCGTTGACCATTGTTGGCATCCATG-----TGTACGCA
GC----CTAGCTAGCTGCGTGATCATTTTCATTTCGACATGAGGTTGGC----CGATGGGTTGTTGCAGCTCACCCA--T
CACC--------------------TGCACAGATCGCGTC-AAAACGGCTCCAAATCGTCATCGAG-------TTCCATGT
ACGTACGTGACGATAGTTCATCAGTGCGGCCGACATGCGCGTTTTCTATGCACCCCGGTGCGGGAAATGAGACGTGAGAA
GGTTCGTCTCGTGGCGTTTTGGCAACATGCCCAGGCGTAGTGCCAGCAGTGTCCGGACCAACTACGGCGACTTATTTGTC
CCATGTTCAGGCTAGCTCATGCTCCGTGATGATCATGGCTGGGAAAGGTTGTTGCCCCGAATCTTATGCTTAAACTACTG
ATTAGGTCTTCATCACGCTCATGTGATGCCATAT---TCCTCCTTCACCGGCTATGCCGGCGGCTTGCATGCAATTATAC
TTTTGTTC-TT-TCTTGGAGTGCAATATATGGTGGGTGGGCAGATGTAGTGCTCCTATTCGATTATGCCTAGCTAAAAAA
A-TGTGTTATTTCATTAGATGATGGCATGGATTTCGGTGTGTGACGAGTCATGGCGACGGTGGAACGTAACCACTGCCAC
GTCATCTCATCAAGATGACCACAAGTGTGA--TGCTGCACTGCAACAATGAAAGTTCGTGCCGTAATATATTTCTT----
------------------AGAATCCCCTATATATATATATTCCCTCTTCCTTTT-GTGGCAACTCGGCCATTAAACGTTC
GTTGGAGGT--CGC-----CTCAGCTCCAGCCATGGCAGAGAAGGTGTGAGCGCCCTGTTTCATG----CATACAT----
GCTTACCTTCATCTGCATGCGTGC----ATGCATGGTTGATTTGGCGGGTGGAGTAGTGGTGTTGTGA------------
--------------------------------------------------------------------------------
---------------------------------------------ACAATAGTCAAGTACTCGATTTAATTTTGTCA---
--------------AATTAACCCTGTAATACGACGTGGATCCATTTTGTGTTTTGCTTATTGACTTCGATGCAATTAACA
TCCATGGATCAGAGAAGGAGAAGATCAGCACCATCAATTTCGACACGAAGAAAAACACGGTGACCGTCTCCGGTCCGTTC
GACCCGGTGAAGCTGTCCAAGAAGCTGCGATGCAAGGCCTGCAAGGCGATCAAGGACATCAAGATCGTCGAAGAGAAGAA
GCCCGATGCCAAGAAGCCTGAAGAGAAGAAGCCGGAGGAGAAGAAGCCCAAGGAGAAGAAGTCGGCCGCCGATGGCTGCA
AGTGCTGCTGCAAGAAGCCCGACGAGAAGAAGCCGGATGAGAAGAAGAAGCCCGACGAGAAGAAGCCGGAGGAAAAGAAG
---AAACCC------GACGAGAAGAAGCCGGACAAGAAGAAGCCGGAGGAGAAGCCGAAGCCCAAGGAGGAACCCAAA--
-------CCAGCCGCGCCGTCGACGACGGTGAACCTGCAGTTCACGCAGATCTGCAACCTCTGCTACCCGTGGCCATGCA
GCGACCCGAGCCACTGGGGAGGCGTGCATCAGTACCCGCATCCC---CAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCGTACCCCGCCCCCCACCACCCTCA---------------GCA---------------CCCGCCCTGGGCGGCGCC
GGCGACCCCGAAGAGGCAGCCGTGCGGAGGCCCGGCGTACTGCGGAGGAGGGTGCGGCTCGTGCGGCGGCG---------
---GCGGGTACGGGGCGTGGCCGCCGCCGATGCCGACGCCGCTGCAGATGATGCAGCCCCCGCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCACCCAG
TGCGTGCACCATCATGTGATTCTCAGGCCAGCGACCGTTCGTGCATGCATGCATGCGCTGTTCTACCTCTCCGCACGTTG
TTTTTCGTGGT--TCGACCGATGTTCAATATTTGCCATGTATGTTTCGTGCACAGTACTGCATTTGTTTATGTCTATATC
CGCAGCAAAGAAGGTGTAGCTGCCACGTGCAATTTTCAGTGTGAAAATAGATGCTCTCGGAACAATTGATGTAGCTTTTT
ATAGATGAT---TTCAATTTTTGGGGCAATAAAAGTTCGGAAATGCTAGTATTTGTAGAGGGTTTCGGCATACAAAAATT
CAAAAGGCAAATTCGTCACCTAGTTAGGCAAATTCGTCACCTAGTTAGGTGGACACTAGCAGTGGAAGCCACTCGGGGTA
GAGCGATGCGGTCAGAAGAAAGAGATCGACTACGGGCAGTCGATTTCTAATATATCACTACGACAGTGCTCGTGCATTGC
AATGGGATATAAATATTCAGTATGTTAACTTGAGATTTAACTGCCCGTGATTTACATTATATTTTGATGAGAAATTTGGT
AAGTAACTAAAGTAAAATTGAGGTGATTGATTTTCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGAGAAAAAAATGAAACATGAAACATC
ACATTTCTTTTAGGACGCCAATATTGAGGGAACGTACGGTGGGAGCCCTTCCCAGACCGAACGAATCTTTCCCCAAGGCA
GGGAGGAACGATCGAACAATTTCGTTCTGAGTGGGAGGCCTCCCAACGCGAACAACCTTATGTCGCTTCGTGCTAACAGG
CCAAACATGCCCATTTAAGGTACCCAAAACGTAAAAAAAAACAGAAAACCAACTAAAAACTGAGAAAAAAACTTTACAGT
AAAAATCACACGAAATCTAGACAAGTTCATATAGAAAAAGTTGATGAAAAAAATTATATATATTGCCATGGATTAGATGA
TAAAATTGCACTGTTATACTTGTTAAAACAACAACACAAACAAAAGTACGTACATGCCATGACAGAGCACAACTAGCAAA
ATTTTCATGGTCTGCATTAAAAAGGAGGACATGTGTTGCCGTGCTCCAACAAGAAAAATAATGCTTGAAAAAAATTATTT
GCCATGT
>chr2D_1
TGTTGCAAACACAAAACATATCCGGCCGGTCGTTTCATTCTGCGATGGCACCGCCCCTCCGCCACCTCGGCTGCGCCTCC
GTCCACTCCGTCACCTCGCCGTAGCCAAATCCGGCGAGCTGCCGCGGCCAGTCCACCGTCGTTCGCTGTCGCCGCCTCAC
A-------------------------------------------------GCGCTTGGGGATGGTGCATGACCGCAGCGA
GCGGGAAAAGCGGTCGCCCGTCTCATGGTAAATGCACGTTAATCAGTTATCAGTATAGCAAACAACCCAGGTCACAAGAA
AGATGCTCCACGACATGCTCTCCCCCGGTTTGCAGCACCTTGCCGCCCACCCGTCCATATCGGTGGTTGGCGACGATCCA
ATCGTACATGCCAGCCAGCTGATCATTTCGACGTAGCTGTCGTCGTTGACCATTGTTGGCAACCATG-----TGTACGCA
GC----CTAGCCATCTACGTGATCATTTTCACTTGGACATGAGGTTGGCCGATCGATGGGTTGTTGCAGCTCACCCA--T
CACCGAAACTCCGAAAGATATACCTTCACAGATCGCGTCAAAACGGCCCCCAAATCGTCATCGAGCTCCATCCTCCATGT
ACGTACGTGACGACGGCTCG---GTGCGGCCGACATGCGCGTTTTCTATGCACCCCGGTACGGGAAACGAGTCGTGAGAA
GGTTCGCCTCGTGGCGTTTTGGCAAGTCGCCCCGGCGTAGTGCCAGCGGTTTCCGGACCGACTGCGGCGACTTATTTGTC
CCATGTTCGGGCTAGCTCATGCTCCGTGATGATCATGGCGGGGAAAGGTTGTTGCCCCGAATCTTATGCTTAAACTACTG
ATTAGGTCTTGATCAAGCTCATGTGATGCCATAT---TCCTCCTTCACCGGCTATGCCGGCGCTGTGCACGCAATTATAC
TTTTGTTCTTT-TCTTGGGGTGCAATATACGGTGGGTGCGCAAATGTGGTGCTCCTATTCGATTATGCCTGGCTAAAAAA
T-TGTAGTTTTTGGCCTGGACTAGG-------------GTGTGACGAGTCATGGCGTTGGTGGAACCTAACCACTGCCAC
GTCATCTCATCG---TGACCACAAGCGTGCCGTGCTGCACTGCAACAATGA---------------TATATTTCTTAGGC
GATTGCCATGATTAAGTAAGAGTCCCC----TATATATATTCCCTCTTCCTTTT-GTGGCAACCCTGCGATTAAACGTTC
GTTGGAGTT--CGC-----CTCAGCTCCAGCCATGGCAGAGAAGGTG--AGTGCCCTGCTTCATG----CATGCTT----
GCGTTCAATTT--TGCATGCATGT----GTGCATGGTTAATTTGGAAGTTGTAGTGATGGTGCTGTGAGCTCTTTGTGTT
GATTCTCCTGCCATGCATGTATCCACCAGGTATCAACGTTGATCATTGAAGCCAACCTCGAATGCGAGAAATGCTACAAG
AAGATTCAGAAAGTGCTATGCAAACTCCAAGGTACGTAG-----TACAATAGTCAAGCACTCAATTTACTATAATTGTGT
ATGTACTATAAGAGAATTAACCCTGTAATAAGAAGTGGATTCATTTTGTGTTTCGCTTATTAACTTGCATGCAATTAACA
TCGATGGATCAGAGAAGGAGAAGATCAGGACCATCAACTTCGACACGAAGAAGAACATGGTGACCGTCTCCGGTCCGTTT
GACCCGGTGAAGCTGTCGAAGAAGCTGCGATGCAAGGCGTGCAAGGCGATCAAGGACATCAAGATCGTCGAAGAGAAGAA
GCCCGATGCCAAGAAGCCGGAGGAG---------------AAGAAACCCGAGGAGAAGAAGCCGGCCGCCGATGGCTGCA
AGTGCTGCTGCAAGAAGCCCGACGAGAAGAAGCCGGATGAGAAGAAGAAGACCGACGAGAAGAAGCCGGAGGAAAAGAAG
CAGGAAGAAAAGAAAGAGGAAAAGAAGGAAGAAAAGAAGAAGACGGATGACAAG---AAGAGCGAGGAGAAGCCCAAACC
GGCCGCGCCGGCGGCACCGTCGACGACGGTGAACCTGCAGTTCACGCAGATGTGCAACCTCTGCTACCCGTGGCCGTGCA
GCGACCCGAGCCACTGGGGAGGTGTACACCAGTACCCGCATCCCCAGCAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCGTACCCCGCCCCCCACCACCCTCA---------------GCA---------------CCCGCCCTGGGCGGCGCC
GGCGACCCCGAAGAGGCAGCCGTGCGGAGGCCCGGCGTACTGCGGAGGAGGGTGCGGCTCGTGCGGCGGCGGAGGCGGTG
GCGGCGGGTACGGGGCGTGGCCGCCGCCGATGCCGACGCCGCTGCAGATGATGCAGCCCCCGCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCGCCCAG
TGCGTGCACCGTCATGTGAT-CTCAGGCCGGCAACCGTGCATGCATGGCAGTTCGACC------ACCTCTCTGCATGTTG
TTTTTCGTGGTAATT---CGATGTTCCATGTTTGTCCTGTATGTTTCGTGCACAGTACTGCATTTGTTTATGTGTACCTG
T--AGCAAAGAAGGTGTAGCTGCCACGTACATTTTTCAGTGTGAAAATATATGCTCTCGGAACAATTGATGTAGCTTTGT
ATAGATAAAAAATTCAATTTTTGGGGCACTAAAAGTTTGGAAATGCTAGTATTTGT------------------------
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>chr2B_1
TGTTACAAACATAAAACATATCCGGCCGGTCGTTTTATTCTGCGATGACACCGCCCCTCCGCCACCTCCGCTGCGCCTCC
GCCCACTCCGTCACCTCGCCGTAGCCAAATCCGGCGAGCTGCCGCGGCCAGTCCACCATCGTTCGCCGTCACCGCC----
---------------CGGCTCGAACCCATCTGCCCCCACGCCCCGGAACAGCGCTTGGGGCTG-----------------
-------------------GTCTCATGGCAAATGCACGTTAAT-------CAGTATAGCAAACAACCCAGGTCACAAGAA
AGATTCTCCACGACATGCTCTCCCCCGGTTTGCAGCACCTTGCCGCCCACCCAACCATATCGGTGGCTGCCGACGATCCA
ATCGTACATGCCAGCCAGCTGATCCTTTCGACGTAGCTGTCGTCGTTGACCATTGTTGGCATCCATG-----TGTACGCA
GC----CTAGCCATCTACGTGATCATTTTCATTTCGACATGAGGTTGGCCGATCGATGGGTTGTTGCAGCTCACCCA--T
CACCGAAACTCTGAAGGATATACCTGAACAGATCGCGTC-AAAACGGCCCCAAATCGTCATCGAGCTCCATCTTCCATGT
ACGTACGTGACGACGGCTCG---GTGCGGCCGACATGCGCGTTTTCTATGCACCCCGGTACGGGAAATGGGTCGTGAGAA
GGTTCGTCTCGTGGCGTTTTGGCAACATGCCCCGGCGTAGTGCCAGCAGTGTCCGGACCAACTACGGCGACTTATTTGTC
CCATGTTCAGGCTAGCTCATGCTCCGTGATGATCATGGCGGGGAAAGGTTGTTGCCCCGAATCTTACGCTTAAACTACTG
ATTAGGTCTTCATCACGCTCATGTGATGCCATATTCCTCCTCCTTCACCGGCTATGCCGGCGCCTTGCATGCAATTATAC
TTTTGTTC-TT-TCTTGGAGTGCAATATACGGTGGGTGGGCAGATGTAGTGCTCCTATTCGATTATGCCTAGCTAAAAAA
AATGTGTTATTTCATTAGATGATGGCATGGATTTCGGTGTGTGACGAGTCATGGCGACGGTGGAACGTAACCACTGCCAC
GTCATCTCATCAAGATGACCACAAGTGTGA--TGCTGCACTGCAACAATGAAAGTTCGTGCCGTAATATATTTCTT----
------------------AGAATCCCC----TATATATATTCCCTCTTCCTTTT-GTGGCAACTCGGCCATTAAACGTTC
GTTGGAGGT--CGC-----CTCAGCTCCAGCCATGGCAGAGAAGGTG--AGCGCCCTGTTTTATG----CATACATATAT
GCTTACCTTCGTCTGCATGCGTAC----ATGCATGGTTAATTTGGCAGGTGTATTAGTGGTGTTGTGAGCTCTTTGTGTT
GATTCTCCTGCCATGCGTGTATCCACCAGGTAGCTACTTTGATCATTGAAGCCAACCTCGAATGCGAGAAATGCTACAAG
AAGATTCAGAAAGTGCTATGTAAACTCCAAGGTACGCAG-----CACAATAGTCAAGTACTCAATTTAATTTTGTCA---
--------------AATTAACCCTGTAATGCGAGGTGGATCCATTTTGTGTTTTGCTTATTGACTTCGATGCAATTAACT
TTGATGGATCAGAGAAGGAAAAGATCAGGACCATCAATTTCGACACGAAGAAGAACACGGTGACCATCTCCGGTCCGTTT
GACCCGGTGAAGCTGTCGAAGAAGCTGCGATGCAAGGCCTGCAAGGCGATCAAGGATATCAAGATCGTCGAAGAGAAGAA
GCCCGACGCCAAGAAGCCGGAAGAGAAAAAGCCGGAGGAGAAGAAGCCCGAGGAGAAGAAGCCGGCCGCCGATGGCTGCA
AGTGCTGCTGCAAGAAGCCCGACGAGAAGAAGCCGGATGAGAAGAAGAAGCCCGACGAGAAGAAGCCGGAGGAAAAGAAG
---AAACCC------GACGAGAAGAAGCCAGACGATAAGAAGCCGGAGGAGAAGCCGAAGCCCAAGGTGGAGCCCAAA--
-------CCAGCCGCGCCGTCGACGACGGTGAACCTGCAGTTCACGCAGATCTGCAACCTCTGCTACCCGTGGCCGTGCA
GCGACCCGAGCCACTGGGGAGGCGTGCACCAGTACCCGCATCCC---CAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCGTACCCCGCCCCCCACCACCCTCA---------------GCACCCGGTTCCTCAGCACCCGCCCTGGGCGGCGCC
GGCGACCCCGAAGAGGCAGCCGTGCGGAGGCCCGGCCTACTGCGGAGGAGGGTGCGGCTCGTGCGG---------CGGCG
GCGGCGGGTACGGGGCGTGGCCGCCGCCGATGCCGACGCCGCTGCAGATGATGCAGCCTCCCCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCGCCCAG
TGCGTGCACCGTCATGTGATTCTCAGGCCAGCGACCGTTCGTGCATGCATGCATGCGCTGTTCGACCTCTCCGCACGCTG
TTTTTCGTGGT--TCGACCGATGTTCAATATTTGCCATGTATGTTTCGTGCACAGTACTGCATTTGTTTATGTCTATATC
CGCAGCAAAGAAGGTGTAGCTGCCACGTACAATTTTCAGTGTGAAAATAGATGCTCTCGGAACAATTGATGTAGCTTTTT
ATAGATAAT---TCCAATTTTTGGGGCAATAAAATTTCGAAAATGCTAATATTTGTATAGGGTCTCACCATACAAAAATT
CAAAAGGCAAAGTCGCCACC------------------------------------------------------------
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>chr2A_1
TGTTACAAACACAAAACATATCCGGCTGGTCGTTTTATTCTGTGATGACACCGCCCCTCCGCCACCTCGGCTGCGCCTCC
GTTCACTCCGTCACCTCGCCGTAGCCACATCCAGCGAGCTGCCGCGGCCAGTCCACCGCCGTTCGCCGTCGCCGTCTCAC
AAGACAACCACCGCCCGGCTCAAACCCATCCC------CGCCCCGCAACAACGCTTGGGGCTG-----------------
-------------------GTCTCATGGCAAATGCACGTTAAT-------CAGTATAGCAAACAGCCCAGGTCACAAGAA
AGATGCTCCACGACATGCTCTCCCCCGGTTTGCAGTACCTTGCCGCCCACCCGTCCATATCGGTGGTTGGCGACGATCCA
ATCGTACATGCCAGCCAGCTGATCATTTCGACATAGCTGTCGTCGTTGACCATTGTTGGCATCCATG-----TGTACGCA
GC----CGAGCCATCTACGGGATCATTTTCACTTGGACATGAGGTTGGCCGATCGATGGGTTGTTGCAGCTCACCCCCGT
CACCGAAACTCTGAAGGATATACCCGCACAGATCGCGTCAAAAACGGCCCCAAATCGTCATCGAG-------TTCCATGT
ACGTACGTGACGACGGCTCG---GTGCGGCCGACATGCGCGTTTTCTATGCACCCCGGTACGGGAAACAAGTCGTGAGAA
GGTTCGCCTCGTGGCGTTTTGGCAACATGCCCCGGCGTAGTGCCAGCAGTGTCCGGACCAACTACGGCGACTTATTTGTC
CCATGTTCAGGCTAGCTCATGCTCCGTGATGATCGTGGCGGGGAAAGGTTGTTGCCCCGAATCTTACGCTTAAACTACTG
ATTAGGTCTTCATCACGCTCATGTGATGCCATATTCCC---CCTTCACCGGCTATGCCGGCGCCGTGCATGCAATTATAT
TTTTGTTC-TT-TCTTGGAGTGCAATATACGGTGGGTGGGTGTACGTTCTACTCCTATTCGATTATGCCTAGCTAAAAAA
A-TTTGTTATTTCACTAGATGATGGCACGGATTTCGGTGTGTGACGAGTCATGGCGACGGTGGAGCGTAACCACTGCCAC
GCCATCTCATCAAGATGACCACAAGTGTGA--TGCTGCACTGCAACAATGA---------------CATATTTCTTAGGC
AATTGCCATGATTAAGTAAGAGTCCCC----TATATATATTCCCTCTTCCTTTTTGTGGCAACCCTGCGATTAAACGTTC
GTTGGAGCTCGCGC-----CTCAGCTCCAGCCATGGCAGAGAAGGTG--AGTGCCCCGTTTCATGCGTACATGCTT----
GAGTTAAATTT--TGCATGCATGCATGTATGCATGGTTAATTTGGAAGTTGTAGTGATGGTGTTGTGAGCTCTTTGTGTT
GATTCTCCTGCCATGCGTGTATCCACCAGGTATCCACGTTGATCATTGAAGCCAACCTCGAATGCGAGAAATGCTACAGG
AAGATTCAGAAAGTGCTATGTAAACTCCAAGGTACGTAG-----TACAATAGTCAAGCACTCAATTTAGTTGTGTCA---
--------------AATTAACCATGTGATAAGAAGTGGAACCATTTTATGTTTCGCTTATTAACTTCGATGCGATTAACA
TCGATGGATCAGAGAAGGAGAAGATCAGGACCATCAACTTCGACACCAAGAAGAACACGGTGACCGTCTCCGGCCCATTC
GACCCGGTGAAGCTGTCCAAGAAGCTGCGATGCAAGGCGTGCAAGGCTATCAAGGACATCAAGATCATCGAAGAAAAGAA
GCCCGATGCCAAGAAGCCGGAGGAGAAGAAGCCAGAGGAGAAGAAGCCCGAGGAGAAGAAGCCGGCCGCCGATGGCTGCA
AGTGCTGCTGCAAGAAGCCCGATGAGAAGAAGCCGGATGAGAAGAAGAAGGCCGACGAGAAGAAGCCGGAAGAAAAGAAG
---GAAGAAAAGAAGGAGGAAAAGAAGGAAGAAAAGAAGAAGACGGATGAGAAG---AAGGGCGAGGAGAAGCCCAAACC
GGCCGCGCCGGCGGCACCGTCGACGACGGTGAACCTGCAGTTCACGCAGATGTGCAACCTCTGCTACCCGTGGCCGTGCA
GCGACCCGAGCCACTGGGGAGGCGTGCATCAGTACCCGCATCCCCAGCAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCCTACCCCGCCCCGCACCACCCTCA---------------GCA---------------CCCGCCCTGGGCGGTGCC
GGCGACCCCGAAGAGGCAGACGTGCGGAGGCCCGGCGTACTGCAGAGGAGGGTGCGGCTCGTGCGGCGGCGGCGGCGGTG
GCGGCGGGTACGGGGCGTGGCCGCCGCCGATGCCGACGCCGCTGCAGATGATGCAGCCCCCGCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCGCCCAG
TGCGTGCACTGTCATGTGAT-CTCAAGCCGGCAACCGTGCATGCATGGCAGTTCGACC------ACCTCTCTGCATGTTG
TTCTTCGTGGTAATT---CGATGTTCCATGTTTGTCCTGTATGTTTCGTGCACAGTACTGCATTTGTTTATGTGTACCTG
T--AGCAAAGAAGGTGTAGCTGCCACGTACATTTTTCAGTGTGAAAATATATGCTCTCGGAACAATTGATGTAGCTTTGT
ATAGATAAT---TTGAATTTTTGGGGCACTAAAAGTTTGGAAATGCTAGTATTTGT------------------------
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>chr2A_226
--------------------------------------------------------------------------------
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-------------------------------------GTTAAT-------CAGTATAGCAAACAACCCAGGTCACAAGAA
AGATGCTCCACGACATGCTCTCCCCCGGTTTGCAGCACCTTGCCGCCCACCCGTCCATACCGGTGGTCGGCGACGATCCA
ATCGTACATGCTAGCCAGCCGATCATTTCAT-GTAGCTGTCGTCGTTGACCATTGTTGGCATCCATGCCATGTGTACGCA
GCCTAGCTAGCCATCTACGTGATCATTCTCACTTGGACATGAGGTTGGCCGATCGATGGGTTGTTGCAGCTCACCCA--T
CACCGAAACTCCGAAAGATATAC------------------------CCCCAAATCGTCATCGAG-------TTCCATGT
ACGTACGTGAGGACGGCTCG---GTGCGGCCGACATGCGCGTTTTCTATGCACCCCGGTACGGGAAACAAGCCGTGAGAA
GGTTCGCCTCGTGGCGTTTTGGCAACATGCCCAGGCGTAGTGCCAGCAGTGTCCGGACCAACTACGGCGACTTATTTGTC
CCATGTTCGGGCTAGCTCATGCTCCGTGGTGATCATGGCGGGGAAATGTTGTTGCCCCGAATCTTATGCTTAAACTACGG
ATTAGGTCTTCATCACGCTCATGTGATGCCATATTCCC---CCTTCACCGGCTATGCCGGCGCTGTGCATGCAATTATAT
TTTTGTTC-TTTTCCTGGGGTGCAATATACGGTGGGTGCGCAAATGTGGCGTTCCTATTCGATTATGCCTGGCTAAAAAA
T-TGTAGTTTTTGGCCTGGACTAGC-------------GTGTGACGGGTCATGGCGTTGGTGGAACGCAACCACTGCCAC
GCCATCTCATCG---TGACCACAAGCGTGC--TGCAGCAACACTGGATTATAGGAC------------------------
-------------------GAGTCCCC----TATATATATTCTCTCTTCCTTTT-GCGGCAACCCTGCGATTAAACGTTC
GTTGGAGACTTGGAGTTCGCTCAGCCCCAGCCATGGCAGAGAAGGTG--AGTGCCCTGCTTCATG----CATGCTT----
GCGTGCAATTT----------TGC----ATGCATGGTTAATTTCGAAGTTGTAGTGATGGTGTTGTGAGCTCTTTGTGTT
GATTCTCCTGCCATGCTTGTATCCACCAGGTATCCACGTTGATCATTGAAGCCAACCTCGAATGCGAGAAATGCTACAAG
AAGATTCAGAAAGTGCTAGGCAAACTCCAAGGTACGTAGTACAATACAATAGTCAAGCACTCGATTTAATTTTGTCA---
--------------AATTAACCCTGTAATAAGAAGTGGAATCCTTTTATGTTTTGCTTATTAACTTCGATGCAATTAACT
TTGATGGATCAGAGAAGGAGAAGATCAGGACCATCATTTTCGACACGAAGAAGAACACGGTGACTATCTCTGGCCCATTC
GACACGGCGAAGCTGTCCAAGAAGCCGCGATGCAAGGCCTGCAAGGCGATCAAGGATATCAAGATCGTTGAAGAGAAGAA
GCCCGATGCCAAGAAGCCGGAGGAGAAGAAGCCAGAGGAGAAGAAGCCCGAGGAGAAGAAGCCGGCCGCCGATGGCTGCA
AGTGTTGCTGCAAGAAACCGGACGAGAAGAAGCCGGATGAGAAGAAGAAGCCCGACGAGAAGAAGCCGGAGGAAAAGAAG
---AAACCC------GACGAGAAGAAGCCAGATGATAAGAAGCCGGAGGAGAAGCCCAAATCCAAGGAGGAGACCAAA--
-------CCGGCCGCGCCGTCGACGACTGTGAACCTGCAGTTCACGCAGATCTGTAACCTCTGCTACCCGTGGCCGTGCA
GCGACCCGAGCCACTGGGGAGGCGAGCACCAGTACCCGCAGCCCCAGCAGCCGCAGTGGCCGTGCGAGCCGCCGCAGATG
CCGGCGTACCCCGCCCCCCACCACCCTCAGCACCCGATTCCTCAGCA---------------CCCGCCCTCGGCGGCGCC
GGCGACCCCGAAGAGGCAGCCGTGCGGAGGCTCGGCGTACTGCGGAGGAGGGTGCGGCTCGTGTGGCGGCGGA---GGCG
GCGGCGCGTACGGGGCGTGGCCGCCGGCGATGCCGACGCCGCTGCAGATGATGCAGCCCCCGCCGATGGGCTGCGGCGGG
CCGGCGTCGTCGTGCAGAGGGTGCAAGGGCTGCCGGATCGTGCAGGAGGGGAGGTTCATCTACGAGGAGTACCCGCCCAG
TGCGTGCACCGTCATGTGATTCTCAGGCCAGCGACCGTTCGTGCATGCATGCATGCGCTGTTCGACCTCTCTGCACGTTG
TTTTTCGTGTT--TT---AGATGTTCCATATTTGCCCTGTATGTTTCGTGCACAGTACTGTATTTGTTTATGTC--TATC
CGCAGCAAAGAAGGTGTAGCTGCCACGTACATTC-TCAGTGTGAAAATATATGTTCTCCGAACAATTGATGTAGCTTTGT
ATAGATAAT---TTCAATTTTTGGGGCACTAAAAGTTCGAAAATGCTAGTATTT--------------------------
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>SNPs
--------------------S-----------------------------------------------------S----S
---------------------S-----------------------------------------------S----------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------S-S--S---------------------------------------------------------------
------------------------------------------------S-------------------------------
-------------SS-S--SSSS------------------------------------S-----------S--------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SSSS-------------------------------------------------
-----------------------------------------------SS-------------------------------
----------S---------------------------S-------S----S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--S-------------------------S-----------------------S---------------------------
--------------------------------------------------------------------------------
------------------S------------------------------S-----------S------------------
--------------------------------------------------------------------------------
-----------------------------S-----------------------------------------S--------
---------------------------------------------------------------------------S----
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--------------------------------------------------------------------------S-----
----------S----------------------------------------------------S----------------
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----------------------------S---------------------------------------------------
------S--------------------------------------------------S-----S--SS------------
-----------S---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_492
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CATGTGTA
CGCAGCCTAGCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_1399
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GATTTGGCGGGTGGAGTAGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_494
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTGTA
CGCAGCCTAGCTAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_2624
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TACCTCTCCGCACGTTG
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_1328
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GCCATGGCAGAGAAGGTGT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_3460
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TTTCGTTCTGAGTGGGAGGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
