Multiple sequence alignment - TraesCS2D01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G100500 chr2D 100.000 3556 0 0 1 3556 52560317 52556762 0.000000e+00 6567.0
1 TraesCS2D01G100500 chr2A 90.930 2569 136 34 1038 3556 53928541 53926020 0.000000e+00 3363.0
2 TraesCS2D01G100500 chr2A 88.091 571 37 11 421 972 53929442 53928884 0.000000e+00 649.0
3 TraesCS2D01G100500 chr2A 81.843 369 54 8 3 366 53929903 53929543 7.460000e-77 298.0
4 TraesCS2D01G100500 chr2B 88.989 2225 133 46 446 2595 82062085 82059898 0.000000e+00 2649.0
5 TraesCS2D01G100500 chr2B 88.182 660 38 16 2826 3458 82055457 82054811 0.000000e+00 750.0
6 TraesCS2D01G100500 chr2B 93.396 318 16 4 3213 3526 82056581 82056265 1.930000e-127 466.0
7 TraesCS2D01G100500 chr2B 88.776 392 24 4 2818 3190 82059887 82059497 2.500000e-126 462.0
8 TraesCS2D01G100500 chr4D 86.364 176 22 2 1767 1941 305379796 305379970 1.300000e-44 191.0
9 TraesCS2D01G100500 chr1D 79.817 218 42 2 2012 2228 418187268 418187052 1.320000e-34 158.0
10 TraesCS2D01G100500 chr1D 88.034 117 14 0 2664 2780 184984586 184984702 4.790000e-29 139.0
11 TraesCS2D01G100500 chr1D 87.500 120 15 0 2664 2783 377999035 377998916 4.790000e-29 139.0
12 TraesCS2D01G100500 chr7A 88.333 120 14 0 2664 2783 283245299 283245180 1.030000e-30 145.0
13 TraesCS2D01G100500 chr6B 88.333 120 14 0 2664 2783 340596456 340596575 1.030000e-30 145.0
14 TraesCS2D01G100500 chr6A 88.333 120 14 0 2664 2783 211600232 211600113 1.030000e-30 145.0
15 TraesCS2D01G100500 chr5B 86.614 127 17 0 2664 2790 78360472 78360598 1.330000e-29 141.0
16 TraesCS2D01G100500 chr3A 88.136 118 14 0 2666 2783 305689197 305689080 1.330000e-29 141.0
17 TraesCS2D01G100500 chr1B 88.136 118 14 0 2666 2783 329422003 329421886 1.330000e-29 141.0
18 TraesCS2D01G100500 chrUn 74.848 330 65 9 3 317 48485842 48485516 2.230000e-27 134.0
19 TraesCS2D01G100500 chrUn 74.848 330 65 9 3 317 399374812 399375138 2.230000e-27 134.0
20 TraesCS2D01G100500 chr5A 96.154 52 1 1 1794 1844 44885913 44885862 2.270000e-12 84.2
21 TraesCS2D01G100500 chr1A 92.857 56 4 0 1890 1945 310353490 310353545 8.180000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G100500 chr2D 52556762 52560317 3555 True 6567.000000 6567 100.000000 1 3556 1 chr2D.!!$R1 3555
1 TraesCS2D01G100500 chr2A 53926020 53929903 3883 True 1436.666667 3363 86.954667 3 3556 3 chr2A.!!$R1 3553
2 TraesCS2D01G100500 chr2B 82054811 82062085 7274 True 1081.750000 2649 89.835750 446 3526 4 chr2B.!!$R1 3080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 199 0.107214 CGCAATGGGTGGGAGTACAT 60.107 55.0 0.00 0.0 42.76 2.29 F
576 674 0.250945 TAACCGGCCAACAGCATGAA 60.251 50.0 0.00 0.0 46.50 2.57 F
1302 1715 0.168128 CCAATCCGCGTTCTTGTTCC 59.832 55.0 4.92 0.0 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1689 0.513820 GAACGCGGATTGGAACGAAA 59.486 50.000 12.47 0.0 0.00 3.46 R
1761 2174 0.956902 ACTGCGCAATCTGCACATCA 60.957 50.000 13.05 0.0 45.36 3.07 R
2634 3075 1.068741 GTCATTAGGCCTCAGTACCCG 59.931 57.143 9.68 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.153939 CGTCTTGTGGCTCGAGGAG 60.154 63.158 15.58 0.00 0.00 3.69
31 32 1.867919 CGTCTTGTGGCTCGAGGAGT 61.868 60.000 15.58 0.00 31.39 3.85
75 76 1.229082 TCGGCTACTGTTCTGGGGT 60.229 57.895 0.00 0.00 0.00 4.95
80 81 1.348064 CTACTGTTCTGGGGTGTGGA 58.652 55.000 0.00 0.00 0.00 4.02
86 87 0.490017 TTCTGGGGTGTGGACCTCTA 59.510 55.000 0.00 0.00 44.26 2.43
108 109 9.197694 CTCTAAGGTGCAATGTACATAATAGTC 57.802 37.037 9.21 0.00 0.00 2.59
110 111 5.297547 AGGTGCAATGTACATAATAGTCGG 58.702 41.667 9.21 0.00 0.00 4.79
111 112 4.084013 GGTGCAATGTACATAATAGTCGGC 60.084 45.833 9.21 4.17 0.00 5.54
120 121 0.306840 TAATAGTCGGCGCTCTCACG 59.693 55.000 7.64 1.07 0.00 4.35
121 122 1.374343 AATAGTCGGCGCTCTCACGA 61.374 55.000 7.64 4.11 34.06 4.35
126 127 4.400109 GGCGCTCTCACGACGACA 62.400 66.667 7.64 0.00 34.15 4.35
127 128 3.166630 GCGCTCTCACGACGACAC 61.167 66.667 0.00 0.00 34.06 3.67
128 129 2.502080 CGCTCTCACGACGACACC 60.502 66.667 0.00 0.00 34.06 4.16
129 130 2.955402 GCTCTCACGACGACACCT 59.045 61.111 0.00 0.00 0.00 4.00
146 147 1.118838 CCTTCTCTAGGTCTGCCCAG 58.881 60.000 0.00 0.00 39.39 4.45
163 178 1.909302 CCAGGCCCTGACTTTCTCTTA 59.091 52.381 13.74 0.00 32.44 2.10
164 179 2.305927 CCAGGCCCTGACTTTCTCTTAA 59.694 50.000 13.74 0.00 32.44 1.85
175 190 3.502211 ACTTTCTCTTAACGCAATGGGTG 59.498 43.478 3.07 0.00 0.00 4.61
176 191 2.107950 TCTCTTAACGCAATGGGTGG 57.892 50.000 3.07 0.00 0.00 4.61
177 192 1.094785 CTCTTAACGCAATGGGTGGG 58.905 55.000 3.07 0.00 45.54 4.61
178 193 0.693622 TCTTAACGCAATGGGTGGGA 59.306 50.000 3.07 0.29 42.76 4.37
181 196 1.277579 TAACGCAATGGGTGGGAGTA 58.722 50.000 3.07 0.00 42.76 2.59
182 197 0.322187 AACGCAATGGGTGGGAGTAC 60.322 55.000 3.07 0.00 42.76 2.73
183 198 1.298340 CGCAATGGGTGGGAGTACA 59.702 57.895 0.00 0.00 42.76 2.90
184 199 0.107214 CGCAATGGGTGGGAGTACAT 60.107 55.000 0.00 0.00 42.76 2.29
186 201 2.420827 CGCAATGGGTGGGAGTACATTA 60.421 50.000 0.00 0.00 42.76 1.90
187 202 3.214328 GCAATGGGTGGGAGTACATTAG 58.786 50.000 0.00 0.00 32.71 1.73
188 203 3.371595 GCAATGGGTGGGAGTACATTAGT 60.372 47.826 0.00 0.00 32.71 2.24
190 205 5.261216 CAATGGGTGGGAGTACATTAGTTT 58.739 41.667 0.00 0.00 32.71 2.66
191 206 4.295141 TGGGTGGGAGTACATTAGTTTG 57.705 45.455 0.00 0.00 0.00 2.93
192 207 3.653836 TGGGTGGGAGTACATTAGTTTGT 59.346 43.478 0.00 0.00 0.00 2.83
195 210 5.067954 GGTGGGAGTACATTAGTTTGTGTT 58.932 41.667 0.00 0.00 0.00 3.32
196 211 5.048991 GGTGGGAGTACATTAGTTTGTGTTG 60.049 44.000 0.00 0.00 0.00 3.33
197 212 5.048991 GTGGGAGTACATTAGTTTGTGTTGG 60.049 44.000 0.00 0.00 0.00 3.77
199 214 4.760204 GGAGTACATTAGTTTGTGTTGGCT 59.240 41.667 0.00 0.00 0.00 4.75
200 215 5.240844 GGAGTACATTAGTTTGTGTTGGCTT 59.759 40.000 0.00 0.00 0.00 4.35
201 216 6.072112 AGTACATTAGTTTGTGTTGGCTTG 57.928 37.500 0.00 0.00 0.00 4.01
202 217 4.320608 ACATTAGTTTGTGTTGGCTTGG 57.679 40.909 0.00 0.00 0.00 3.61
218 233 1.888512 CTTGGGGTCTTGGTCATGTTG 59.111 52.381 0.00 0.00 0.00 3.33
232 247 2.631062 TCATGTTGTACAGGTCTTCGGT 59.369 45.455 0.00 0.00 30.95 4.69
242 257 3.070446 ACAGGTCTTCGGTGTTGATTGTA 59.930 43.478 0.00 0.00 0.00 2.41
246 261 4.454504 GGTCTTCGGTGTTGATTGTAACAT 59.545 41.667 0.00 0.00 42.02 2.71
260 275 1.202348 GTAACATGGCTTGGTTGCTCC 59.798 52.381 5.31 0.00 0.00 4.70
268 283 1.470805 GCTTGGTTGCTCCGTGTTTTT 60.471 47.619 0.00 0.00 39.52 1.94
299 314 0.461548 TTGGCACGAGCTGGATCTAG 59.538 55.000 1.44 0.86 41.70 2.43
313 328 4.960938 TGGATCTAGGTGTTGCATGTATC 58.039 43.478 0.00 0.00 0.00 2.24
317 332 4.928601 TCTAGGTGTTGCATGTATCGTAC 58.071 43.478 0.00 0.00 0.00 3.67
318 333 3.887621 AGGTGTTGCATGTATCGTACT 57.112 42.857 0.00 0.00 0.00 2.73
332 347 2.420628 CGTACTACACGTTGGTTGGA 57.579 50.000 0.00 0.00 45.82 3.53
333 348 2.950433 CGTACTACACGTTGGTTGGAT 58.050 47.619 0.00 0.00 45.82 3.41
352 367 3.812053 GGATGTGTGGCTGCTAATTCTAG 59.188 47.826 0.00 0.00 0.00 2.43
361 376 8.428852 TGTGGCTGCTAATTCTAGTGATTATTA 58.571 33.333 0.00 0.00 0.00 0.98
388 479 8.039603 TGTCTTATGCAAAATACAGTTACTGG 57.960 34.615 17.21 0.00 35.51 4.00
389 480 7.663905 TGTCTTATGCAAAATACAGTTACTGGT 59.336 33.333 17.21 5.15 35.51 4.00
390 481 8.512138 GTCTTATGCAAAATACAGTTACTGGTT 58.488 33.333 17.21 8.22 35.51 3.67
391 482 8.511321 TCTTATGCAAAATACAGTTACTGGTTG 58.489 33.333 17.21 14.44 35.51 3.77
392 483 6.892658 ATGCAAAATACAGTTACTGGTTGA 57.107 33.333 17.21 0.00 35.51 3.18
393 484 6.701145 TGCAAAATACAGTTACTGGTTGAA 57.299 33.333 17.21 7.05 35.51 2.69
394 485 7.101652 TGCAAAATACAGTTACTGGTTGAAA 57.898 32.000 17.21 5.15 35.51 2.69
395 486 7.548097 TGCAAAATACAGTTACTGGTTGAAAA 58.452 30.769 17.21 3.14 35.51 2.29
396 487 8.200792 TGCAAAATACAGTTACTGGTTGAAAAT 58.799 29.630 17.21 0.00 35.51 1.82
397 488 8.487176 GCAAAATACAGTTACTGGTTGAAAATG 58.513 33.333 17.21 6.34 35.51 2.32
398 489 8.977505 CAAAATACAGTTACTGGTTGAAAATGG 58.022 33.333 17.21 0.00 35.51 3.16
399 490 4.584327 ACAGTTACTGGTTGAAAATGGC 57.416 40.909 17.21 0.00 35.51 4.40
400 491 4.215109 ACAGTTACTGGTTGAAAATGGCT 58.785 39.130 17.21 0.00 35.51 4.75
401 492 4.278419 ACAGTTACTGGTTGAAAATGGCTC 59.722 41.667 17.21 0.00 35.51 4.70
402 493 3.502211 AGTTACTGGTTGAAAATGGCTCG 59.498 43.478 0.00 0.00 0.00 5.03
403 494 0.598065 ACTGGTTGAAAATGGCTCGC 59.402 50.000 0.00 0.00 0.00 5.03
404 495 0.883833 CTGGTTGAAAATGGCTCGCT 59.116 50.000 0.00 0.00 0.00 4.93
405 496 0.597568 TGGTTGAAAATGGCTCGCTG 59.402 50.000 0.00 0.00 0.00 5.18
406 497 0.881118 GGTTGAAAATGGCTCGCTGA 59.119 50.000 0.00 0.00 0.00 4.26
407 498 1.474077 GGTTGAAAATGGCTCGCTGAT 59.526 47.619 0.00 0.00 0.00 2.90
408 499 2.094545 GGTTGAAAATGGCTCGCTGATT 60.095 45.455 0.00 0.00 0.00 2.57
409 500 3.128589 GGTTGAAAATGGCTCGCTGATTA 59.871 43.478 0.00 0.00 0.00 1.75
410 501 4.346129 GTTGAAAATGGCTCGCTGATTAG 58.654 43.478 0.00 0.00 0.00 1.73
411 502 3.609853 TGAAAATGGCTCGCTGATTAGT 58.390 40.909 0.00 0.00 0.00 2.24
412 503 4.765273 TGAAAATGGCTCGCTGATTAGTA 58.235 39.130 0.00 0.00 0.00 1.82
413 504 5.368145 TGAAAATGGCTCGCTGATTAGTAT 58.632 37.500 0.00 0.00 0.00 2.12
414 505 5.822519 TGAAAATGGCTCGCTGATTAGTATT 59.177 36.000 0.00 0.00 0.00 1.89
415 506 5.679734 AAATGGCTCGCTGATTAGTATTG 57.320 39.130 0.00 0.00 0.00 1.90
416 507 3.819564 TGGCTCGCTGATTAGTATTGT 57.180 42.857 0.00 0.00 0.00 2.71
417 508 3.717707 TGGCTCGCTGATTAGTATTGTC 58.282 45.455 0.00 0.00 0.00 3.18
418 509 3.384789 TGGCTCGCTGATTAGTATTGTCT 59.615 43.478 0.00 0.00 0.00 3.41
419 510 4.141937 TGGCTCGCTGATTAGTATTGTCTT 60.142 41.667 0.00 0.00 0.00 3.01
531 628 3.479127 TTTACCCCGCGGCAACTGT 62.479 57.895 22.85 13.28 0.00 3.55
572 670 2.281900 GGTAACCGGCCAACAGCA 60.282 61.111 0.00 0.00 46.50 4.41
576 674 0.250945 TAACCGGCCAACAGCATGAA 60.251 50.000 0.00 0.00 46.50 2.57
608 706 3.788227 TTTACCATGCTCCAACAGACT 57.212 42.857 0.00 0.00 0.00 3.24
609 707 4.901197 TTTACCATGCTCCAACAGACTA 57.099 40.909 0.00 0.00 0.00 2.59
623 721 1.220749 GACTAGTGGGCCATGCGAA 59.779 57.895 10.70 0.00 0.00 4.70
637 735 2.554272 CGAACCACGCCCTTTTCG 59.446 61.111 0.00 0.00 35.36 3.46
829 957 0.394192 ATGCATGATCCGACGGATGT 59.606 50.000 33.27 18.51 43.27 3.06
1005 1138 1.758906 CTCTTCTCCCCCGAGACCC 60.759 68.421 0.00 0.00 45.01 4.46
1019 1154 0.926293 AGACCCCCTCTCTCTCTCTG 59.074 60.000 0.00 0.00 0.00 3.35
1021 1156 0.334676 ACCCCCTCTCTCTCTCTGTG 59.665 60.000 0.00 0.00 0.00 3.66
1022 1157 1.042559 CCCCCTCTCTCTCTCTGTGC 61.043 65.000 0.00 0.00 0.00 4.57
1023 1158 1.383456 CCCCTCTCTCTCTCTGTGCG 61.383 65.000 0.00 0.00 0.00 5.34
1301 1714 1.153353 TCCAATCCGCGTTCTTGTTC 58.847 50.000 4.92 0.00 0.00 3.18
1302 1715 0.168128 CCAATCCGCGTTCTTGTTCC 59.832 55.000 4.92 0.00 0.00 3.62
1354 1767 9.784680 CTTGAGATTTCAGTTCCATTTTATCTG 57.215 33.333 0.00 0.00 34.15 2.90
1365 1778 4.019174 CCATTTTATCTGTTCTGTGGGCT 58.981 43.478 0.00 0.00 0.00 5.19
1375 1788 3.318839 TGTTCTGTGGGCTGAAATTTCTG 59.681 43.478 18.64 18.29 34.99 3.02
1379 1792 4.405358 TCTGTGGGCTGAAATTTCTGTTTT 59.595 37.500 21.66 0.00 0.00 2.43
1385 1798 6.127196 TGGGCTGAAATTTCTGTTTTGTTACT 60.127 34.615 21.66 0.00 0.00 2.24
1439 1852 1.473258 GTGGGGAATACAATGCTGCA 58.527 50.000 4.13 4.13 0.00 4.41
1440 1853 1.406539 GTGGGGAATACAATGCTGCAG 59.593 52.381 10.11 10.11 0.00 4.41
1442 1855 1.678101 GGGGAATACAATGCTGCAGAC 59.322 52.381 20.43 9.67 0.00 3.51
1444 1857 2.648059 GGAATACAATGCTGCAGACCT 58.352 47.619 20.43 0.00 0.00 3.85
1445 1858 2.357009 GGAATACAATGCTGCAGACCTG 59.643 50.000 20.43 12.62 0.00 4.00
1693 2106 5.728637 AGGTAGAAATTCTTGGCCAAAAG 57.271 39.130 20.91 9.10 0.00 2.27
1704 2117 2.281900 CCAAAAGCCCCGGTTCGA 60.282 61.111 0.00 0.00 0.00 3.71
1706 2119 1.654023 CCAAAAGCCCCGGTTCGATC 61.654 60.000 0.00 0.00 0.00 3.69
1708 2121 2.132089 AAAAGCCCCGGTTCGATCCA 62.132 55.000 12.88 0.00 0.00 3.41
1713 2126 0.393808 CCCCGGTTCGATCCAACAAT 60.394 55.000 12.88 0.00 0.00 2.71
1734 2147 4.998671 TTCTGATTCCAAACACTGCAAA 57.001 36.364 0.00 0.00 0.00 3.68
1896 2310 0.413832 TCAGGTTCTACAGGGGAGCT 59.586 55.000 0.00 0.00 0.00 4.09
1949 2363 2.479837 TGCAACCGTAAGTCTCACTTG 58.520 47.619 0.00 0.00 39.11 3.16
1952 2366 4.243270 GCAACCGTAAGTCTCACTTGTAT 58.757 43.478 0.00 0.00 39.11 2.29
1963 2377 8.516811 AAGTCTCACTTGTATACTGTAAAACG 57.483 34.615 4.17 0.00 37.00 3.60
1970 2389 7.529519 CACTTGTATACTGTAAAACGTTTCTGC 59.470 37.037 15.01 8.84 0.00 4.26
1973 2392 8.815141 TGTATACTGTAAAACGTTTCTGCTTA 57.185 30.769 15.01 0.00 0.00 3.09
1992 2411 9.066892 TCTGCTTACTACAAAAATGTTCTTCAT 57.933 29.630 0.00 0.00 38.57 2.57
2006 2425 9.825972 AAATGTTCTTCATACACGTTTAAGATG 57.174 29.630 0.00 0.00 35.48 2.90
2041 2460 3.247033 GCTTGCTGCAATTCGATCC 57.753 52.632 16.38 0.00 42.31 3.36
2217 2639 3.460672 GATCGCCGAGGCCATCCAA 62.461 63.158 5.01 0.00 33.63 3.53
2475 2900 0.588252 GTGATCGTGTTGCTGCAACT 59.412 50.000 36.41 22.28 43.85 3.16
2494 2919 4.389772 GCCGTTGCTCATCAATGC 57.610 55.556 0.00 0.00 39.73 3.56
2503 2931 2.429250 TGCTCATCAATGCAATCCTTGG 59.571 45.455 0.00 0.00 36.15 3.61
2511 2939 6.602410 TCAATGCAATCCTTGGTTTAATGA 57.398 33.333 0.00 0.00 0.00 2.57
2579 3016 7.932491 ACTGATCATCTCCATGAATTCTAGTTG 59.068 37.037 7.05 5.11 42.53 3.16
2613 3050 7.158021 TCTTTCTCTGAGATTGTTCTTTCTCC 58.842 38.462 8.42 0.00 38.05 3.71
2614 3051 6.425210 TTCTCTGAGATTGTTCTTTCTCCA 57.575 37.500 8.42 0.00 38.05 3.86
2620 3057 7.941238 TCTGAGATTGTTCTTTCTCCAAGATTT 59.059 33.333 0.00 0.00 41.42 2.17
2626 3067 4.819105 TCTTTCTCCAAGATTTAGGCGA 57.181 40.909 0.00 0.00 36.51 5.54
2662 3103 2.642311 TGAGGCCTAATGACAAGGTTGA 59.358 45.455 4.42 0.00 36.43 3.18
2669 3110 5.183904 GCCTAATGACAAGGTTGAGTGATTT 59.816 40.000 0.00 0.00 36.43 2.17
2671 3112 7.086376 CCTAATGACAAGGTTGAGTGATTTTG 58.914 38.462 0.00 0.00 0.00 2.44
2675 3116 6.738114 TGACAAGGTTGAGTGATTTTGAATC 58.262 36.000 0.00 0.00 0.00 2.52
2680 3121 5.355350 AGGTTGAGTGATTTTGAATCGGATC 59.645 40.000 0.00 0.00 0.00 3.36
2681 3122 5.123820 GGTTGAGTGATTTTGAATCGGATCA 59.876 40.000 0.00 0.00 0.00 2.92
2685 3126 4.574013 AGTGATTTTGAATCGGATCAGAGC 59.426 41.667 1.20 0.00 0.00 4.09
2692 3133 5.535753 TGAATCGGATCAGAGCTTTGATA 57.464 39.130 18.97 5.27 37.90 2.15
2693 3134 5.917462 TGAATCGGATCAGAGCTTTGATAA 58.083 37.500 18.97 8.90 37.90 1.75
2696 3137 4.686972 TCGGATCAGAGCTTTGATAACAG 58.313 43.478 18.97 9.22 37.90 3.16
2701 3142 4.686972 TCAGAGCTTTGATAACAGGATCG 58.313 43.478 2.15 0.00 0.00 3.69
2715 3181 4.051922 ACAGGATCGCAAATCGTAGAATC 58.948 43.478 0.00 0.00 43.58 2.52
2719 3185 4.745125 GGATCGCAAATCGTAGAATCTTCA 59.255 41.667 0.00 0.00 43.58 3.02
2729 3195 4.639310 TCGTAGAATCTTCACTACCAGGAC 59.361 45.833 0.00 0.00 36.58 3.85
2730 3196 4.202030 CGTAGAATCTTCACTACCAGGACC 60.202 50.000 0.00 0.00 36.58 4.46
2733 3199 2.885135 TCTTCACTACCAGGACCGTA 57.115 50.000 0.00 0.00 0.00 4.02
2742 3208 4.704057 ACTACCAGGACCGTAGAAAAGTAG 59.296 45.833 12.10 6.28 37.28 2.57
2744 3210 4.154942 ACCAGGACCGTAGAAAAGTAGAA 58.845 43.478 0.00 0.00 0.00 2.10
2785 3251 8.717821 TCGTAGAATCAAATGAGTTAGTTTTGG 58.282 33.333 0.00 0.00 32.52 3.28
2824 3290 8.352201 CAACCTTGTAATGAGAACTTTGAATCA 58.648 33.333 0.00 0.00 0.00 2.57
2858 3324 1.625818 GCTTGACCCTCTTGAGAAGGA 59.374 52.381 2.71 0.00 30.26 3.36
2884 3350 0.473755 TTGGCAGGTCACACTCATGT 59.526 50.000 0.00 0.00 40.80 3.21
2969 3435 2.159198 GGCCCATAAAAGCTGTGATGTG 60.159 50.000 0.24 0.00 0.00 3.21
3041 3507 2.222027 GGTTGATGGATAAGGAAGGCG 58.778 52.381 0.00 0.00 0.00 5.52
3097 3580 1.134367 ACGGTGTGTAGATGATGGTCG 59.866 52.381 0.00 0.00 0.00 4.79
3098 3581 1.571919 GGTGTGTAGATGATGGTCGC 58.428 55.000 0.00 0.00 0.00 5.19
3168 3652 1.237285 GGAATCAGGCGCACAGTTGT 61.237 55.000 10.83 0.00 0.00 3.32
3171 3655 1.656652 ATCAGGCGCACAGTTGTATC 58.343 50.000 10.83 0.00 0.00 2.24
3174 3658 2.461110 GGCGCACAGTTGTATCGGG 61.461 63.158 10.83 0.00 0.00 5.14
3192 3681 1.763545 GGGAATCGGGGATATCCTAGC 59.236 57.143 21.18 4.86 35.95 3.42
3195 3684 1.475403 ATCGGGGATATCCTAGCGTG 58.525 55.000 21.18 5.58 35.95 5.34
3208 6589 4.778579 TCCTAGCGTGTAGACTAGAACAT 58.221 43.478 0.00 0.00 38.53 2.71
3209 6590 5.922053 TCCTAGCGTGTAGACTAGAACATA 58.078 41.667 0.00 0.00 38.53 2.29
3210 6591 5.757320 TCCTAGCGTGTAGACTAGAACATAC 59.243 44.000 0.00 0.00 38.53 2.39
3211 6592 4.533225 AGCGTGTAGACTAGAACATACG 57.467 45.455 0.00 3.09 0.00 3.06
3254 6636 1.000955 CAACTGGTACAAGAGAGCGGT 59.999 52.381 3.64 0.00 38.70 5.68
3304 6686 4.686091 CAGTGTCGACTTCTGATGCTTTTA 59.314 41.667 25.57 0.00 0.00 1.52
3365 6747 2.366916 AGAAGCATCCCTAATCTGACGG 59.633 50.000 0.00 0.00 0.00 4.79
3389 6772 5.622233 GCTTGGATAAGGTTGGCTTAAGTTG 60.622 44.000 4.02 0.00 34.40 3.16
3485 6871 0.250234 TGACAGCTTAAGCCTGCGAT 59.750 50.000 23.71 0.91 43.38 4.58
3526 6912 8.379457 ACAACAAAAGGTGTCTAACTCTATTC 57.621 34.615 0.00 0.00 40.60 1.75
3537 6923 6.151312 TGTCTAACTCTATTCGAGCAACTCTT 59.849 38.462 0.00 0.00 43.85 2.85
3553 6939 4.965200 ACTCTTGCAGACCCCTTATATC 57.035 45.455 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.558505 CCACAAGACGATGCTTTCAAAG 58.441 45.455 0.00 0.00 0.00 2.77
1 2 2.287547 GCCACAAGACGATGCTTTCAAA 60.288 45.455 0.00 0.00 0.00 2.69
5 6 1.160137 GAGCCACAAGACGATGCTTT 58.840 50.000 0.00 0.00 31.23 3.51
10 11 0.965866 TCCTCGAGCCACAAGACGAT 60.966 55.000 6.99 0.00 34.41 3.73
86 87 5.758296 CCGACTATTATGTACATTGCACCTT 59.242 40.000 14.77 0.00 0.00 3.50
90 91 3.738791 CGCCGACTATTATGTACATTGCA 59.261 43.478 14.77 0.00 0.00 4.08
96 97 3.058432 TGAGAGCGCCGACTATTATGTAC 60.058 47.826 2.29 0.00 0.00 2.90
101 102 0.306840 CGTGAGAGCGCCGACTATTA 59.693 55.000 2.29 0.00 0.00 0.98
102 103 1.064296 CGTGAGAGCGCCGACTATT 59.936 57.895 2.29 0.00 0.00 1.73
110 111 3.166630 GTGTCGTCGTGAGAGCGC 61.167 66.667 0.00 0.00 43.49 5.92
111 112 2.459421 AAGGTGTCGTCGTGAGAGCG 62.459 60.000 0.00 0.00 42.74 5.03
141 142 2.361737 GAAAGTCAGGGCCTGGGC 60.362 66.667 32.23 23.97 41.06 5.36
146 147 2.347731 CGTTAAGAGAAAGTCAGGGCC 58.652 52.381 0.00 0.00 0.00 5.80
163 178 0.322187 GTACTCCCACCCATTGCGTT 60.322 55.000 0.00 0.00 0.00 4.84
164 179 1.298667 GTACTCCCACCCATTGCGT 59.701 57.895 0.00 0.00 0.00 5.24
175 190 4.082949 GCCAACACAAACTAATGTACTCCC 60.083 45.833 0.00 0.00 30.84 4.30
176 191 4.760204 AGCCAACACAAACTAATGTACTCC 59.240 41.667 0.00 0.00 30.84 3.85
177 192 5.941948 AGCCAACACAAACTAATGTACTC 57.058 39.130 0.00 0.00 30.84 2.59
178 193 5.009610 CCAAGCCAACACAAACTAATGTACT 59.990 40.000 0.00 0.00 30.84 2.73
181 196 3.069443 CCCAAGCCAACACAAACTAATGT 59.931 43.478 0.00 0.00 0.00 2.71
182 197 3.554752 CCCCAAGCCAACACAAACTAATG 60.555 47.826 0.00 0.00 0.00 1.90
183 198 2.632512 CCCCAAGCCAACACAAACTAAT 59.367 45.455 0.00 0.00 0.00 1.73
184 199 2.035632 CCCCAAGCCAACACAAACTAA 58.964 47.619 0.00 0.00 0.00 2.24
186 201 0.325203 ACCCCAAGCCAACACAAACT 60.325 50.000 0.00 0.00 0.00 2.66
187 202 0.104120 GACCCCAAGCCAACACAAAC 59.896 55.000 0.00 0.00 0.00 2.93
188 203 0.032615 AGACCCCAAGCCAACACAAA 60.033 50.000 0.00 0.00 0.00 2.83
190 205 0.754957 CAAGACCCCAAGCCAACACA 60.755 55.000 0.00 0.00 0.00 3.72
191 206 1.463553 CCAAGACCCCAAGCCAACAC 61.464 60.000 0.00 0.00 0.00 3.32
192 207 1.152567 CCAAGACCCCAAGCCAACA 60.153 57.895 0.00 0.00 0.00 3.33
195 210 1.434513 ATGACCAAGACCCCAAGCCA 61.435 55.000 0.00 0.00 0.00 4.75
196 211 0.967380 CATGACCAAGACCCCAAGCC 60.967 60.000 0.00 0.00 0.00 4.35
197 212 0.251341 ACATGACCAAGACCCCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
199 214 1.216678 ACAACATGACCAAGACCCCAA 59.783 47.619 0.00 0.00 0.00 4.12
200 215 0.850100 ACAACATGACCAAGACCCCA 59.150 50.000 0.00 0.00 0.00 4.96
201 216 2.224670 TGTACAACATGACCAAGACCCC 60.225 50.000 0.00 0.00 0.00 4.95
202 217 3.074412 CTGTACAACATGACCAAGACCC 58.926 50.000 0.00 0.00 0.00 4.46
218 233 2.806608 TCAACACCGAAGACCTGTAC 57.193 50.000 0.00 0.00 0.00 2.90
232 247 3.894427 ACCAAGCCATGTTACAATCAACA 59.106 39.130 0.00 0.00 42.32 3.33
242 257 1.526575 CGGAGCAACCAAGCCATGTT 61.527 55.000 0.00 0.00 38.90 2.71
246 261 2.594303 CACGGAGCAACCAAGCCA 60.594 61.111 1.20 0.00 38.90 4.75
260 275 5.220265 GCCAATAGCAATGATGAAAAACACG 60.220 40.000 0.00 0.00 42.97 4.49
292 307 3.990469 CGATACATGCAACACCTAGATCC 59.010 47.826 0.00 0.00 0.00 3.36
299 314 4.266976 GTGTAGTACGATACATGCAACACC 59.733 45.833 0.00 0.00 37.93 4.16
317 332 2.223144 CACACATCCAACCAACGTGTAG 59.777 50.000 0.00 0.00 38.70 2.74
318 333 2.214347 CACACATCCAACCAACGTGTA 58.786 47.619 0.00 0.00 38.70 2.90
325 340 1.902918 GCAGCCACACATCCAACCA 60.903 57.895 0.00 0.00 0.00 3.67
326 341 0.322456 TAGCAGCCACACATCCAACC 60.322 55.000 0.00 0.00 0.00 3.77
328 343 2.512692 ATTAGCAGCCACACATCCAA 57.487 45.000 0.00 0.00 0.00 3.53
329 344 2.025981 AGAATTAGCAGCCACACATCCA 60.026 45.455 0.00 0.00 0.00 3.41
330 345 2.648059 AGAATTAGCAGCCACACATCC 58.352 47.619 0.00 0.00 0.00 3.51
331 346 4.272018 CACTAGAATTAGCAGCCACACATC 59.728 45.833 0.00 0.00 0.00 3.06
332 347 4.080919 TCACTAGAATTAGCAGCCACACAT 60.081 41.667 0.00 0.00 0.00 3.21
333 348 3.260632 TCACTAGAATTAGCAGCCACACA 59.739 43.478 0.00 0.00 0.00 3.72
366 381 8.511321 TCAACCAGTAACTGTATTTTGCATAAG 58.489 33.333 0.00 0.00 0.00 1.73
367 382 8.397575 TCAACCAGTAACTGTATTTTGCATAA 57.602 30.769 0.00 0.00 0.00 1.90
369 384 6.892658 TCAACCAGTAACTGTATTTTGCAT 57.107 33.333 0.00 0.00 0.00 3.96
370 385 6.701145 TTCAACCAGTAACTGTATTTTGCA 57.299 33.333 0.00 0.00 0.00 4.08
371 386 7.995463 TTTTCAACCAGTAACTGTATTTTGC 57.005 32.000 0.00 0.00 0.00 3.68
372 387 8.977505 CCATTTTCAACCAGTAACTGTATTTTG 58.022 33.333 0.00 0.00 0.00 2.44
377 468 5.381757 AGCCATTTTCAACCAGTAACTGTA 58.618 37.500 0.00 0.00 0.00 2.74
386 477 0.597568 CAGCGAGCCATTTTCAACCA 59.402 50.000 0.00 0.00 0.00 3.67
387 478 0.881118 TCAGCGAGCCATTTTCAACC 59.119 50.000 0.00 0.00 0.00 3.77
388 479 2.927553 ATCAGCGAGCCATTTTCAAC 57.072 45.000 0.00 0.00 0.00 3.18
389 480 4.009675 ACTAATCAGCGAGCCATTTTCAA 58.990 39.130 0.00 0.00 0.00 2.69
390 481 3.609853 ACTAATCAGCGAGCCATTTTCA 58.390 40.909 0.00 0.00 0.00 2.69
391 482 5.931441 ATACTAATCAGCGAGCCATTTTC 57.069 39.130 0.00 0.00 0.00 2.29
392 483 5.590259 ACAATACTAATCAGCGAGCCATTTT 59.410 36.000 0.00 0.00 0.00 1.82
393 484 5.126067 ACAATACTAATCAGCGAGCCATTT 58.874 37.500 0.00 0.00 0.00 2.32
394 485 4.708177 ACAATACTAATCAGCGAGCCATT 58.292 39.130 0.00 0.00 0.00 3.16
395 486 4.039730 AGACAATACTAATCAGCGAGCCAT 59.960 41.667 0.00 0.00 0.00 4.40
396 487 3.384789 AGACAATACTAATCAGCGAGCCA 59.615 43.478 0.00 0.00 0.00 4.75
397 488 3.983741 AGACAATACTAATCAGCGAGCC 58.016 45.455 0.00 0.00 0.00 4.70
398 489 8.802856 CATATAAGACAATACTAATCAGCGAGC 58.197 37.037 0.00 0.00 0.00 5.03
399 490 9.847706 ACATATAAGACAATACTAATCAGCGAG 57.152 33.333 0.00 0.00 0.00 5.03
413 504 9.607988 CAACCAGTAACCATACATATAAGACAA 57.392 33.333 0.00 0.00 34.29 3.18
414 505 8.983789 TCAACCAGTAACCATACATATAAGACA 58.016 33.333 0.00 0.00 34.29 3.41
415 506 9.826574 TTCAACCAGTAACCATACATATAAGAC 57.173 33.333 0.00 0.00 34.29 3.01
434 525 3.134574 AGTCGTGGCTATTTTCAACCA 57.865 42.857 0.00 0.00 0.00 3.67
435 526 4.501071 TCTAGTCGTGGCTATTTTCAACC 58.499 43.478 0.00 0.00 0.00 3.77
444 535 6.766429 TCTCTGTATAATCTAGTCGTGGCTA 58.234 40.000 0.00 0.00 0.00 3.93
531 628 3.313803 CAGCTCGTCTACAGCAGATCTTA 59.686 47.826 0.00 0.00 39.56 2.10
572 670 8.323567 AGCATGGTAAAAATGGAGAAAATTCAT 58.676 29.630 0.00 0.00 0.00 2.57
576 674 6.213195 TGGAGCATGGTAAAAATGGAGAAAAT 59.787 34.615 0.00 0.00 0.00 1.82
608 706 2.270850 GGTTCGCATGGCCCACTA 59.729 61.111 0.00 0.00 0.00 2.74
609 707 3.965258 TGGTTCGCATGGCCCACT 61.965 61.111 0.00 0.00 0.00 4.00
623 721 1.452470 ACAACGAAAAGGGCGTGGT 60.452 52.632 0.00 0.00 40.80 4.16
637 735 2.515057 TGCGTGGGACCACACAAC 60.515 61.111 20.44 7.83 46.47 3.32
654 755 1.227556 GTGTTCACGGTGTCTGCCT 60.228 57.895 8.17 0.00 0.00 4.75
665 766 0.305313 TTAAAGCGCCACGTGTTCAC 59.695 50.000 15.65 0.74 0.00 3.18
814 942 2.031870 TCTTGACATCCGTCGGATCAT 58.968 47.619 24.03 15.02 45.80 2.45
1005 1138 2.003658 GCGCACAGAGAGAGAGAGGG 62.004 65.000 0.30 0.00 0.00 4.30
1035 1176 1.220477 GAGCAGGAAGAGGGAGCAC 59.780 63.158 0.00 0.00 0.00 4.40
1181 1594 1.990060 CGGGGAAGGAGCTCTTGGA 60.990 63.158 14.64 0.00 35.50 3.53
1276 1689 0.513820 GAACGCGGATTGGAACGAAA 59.486 50.000 12.47 0.00 0.00 3.46
1301 1714 4.106197 CGTCTAGAAAATCTCGAACAGGG 58.894 47.826 0.00 0.00 0.00 4.45
1302 1715 4.982999 TCGTCTAGAAAATCTCGAACAGG 58.017 43.478 0.00 0.00 0.00 4.00
1354 1767 3.319122 ACAGAAATTTCAGCCCACAGAAC 59.681 43.478 19.99 0.00 0.00 3.01
1398 1811 9.016438 CCCACCAGCTAAAAACTAAAACTAATA 57.984 33.333 0.00 0.00 0.00 0.98
1399 1812 7.039293 CCCCACCAGCTAAAAACTAAAACTAAT 60.039 37.037 0.00 0.00 0.00 1.73
1439 1852 2.746359 GTCCAGCACTGCAGGTCT 59.254 61.111 19.93 11.39 36.56 3.85
1440 1853 2.740055 CGTCCAGCACTGCAGGTC 60.740 66.667 19.93 9.05 36.56 3.85
1689 2102 1.378119 GGATCGAACCGGGGCTTTT 60.378 57.895 6.32 0.00 0.00 2.27
1693 2106 2.822701 GTTGGATCGAACCGGGGC 60.823 66.667 6.32 0.00 0.00 5.80
1698 2111 5.449177 GGAATCAGAATTGTTGGATCGAACC 60.449 44.000 16.78 4.46 0.00 3.62
1704 2117 6.268387 AGTGTTTGGAATCAGAATTGTTGGAT 59.732 34.615 0.00 0.00 0.00 3.41
1706 2119 5.693104 CAGTGTTTGGAATCAGAATTGTTGG 59.307 40.000 0.00 0.00 0.00 3.77
1708 2121 5.163426 TGCAGTGTTTGGAATCAGAATTGTT 60.163 36.000 0.00 0.00 0.00 2.83
1713 2126 4.402155 ACTTTGCAGTGTTTGGAATCAGAA 59.598 37.500 0.00 0.00 36.96 3.02
1734 2147 4.650754 ACCGAATTCGCTTGAGTATACT 57.349 40.909 22.36 4.68 38.18 2.12
1761 2174 0.956902 ACTGCGCAATCTGCACATCA 60.957 50.000 13.05 0.00 45.36 3.07
1896 2310 3.324930 CTGCTGACCCTGCCCTGA 61.325 66.667 0.00 0.00 0.00 3.86
1949 2363 8.919661 AGTAAGCAGAAACGTTTTACAGTATAC 58.080 33.333 15.89 12.08 0.00 1.47
1952 2366 7.920151 TGTAGTAAGCAGAAACGTTTTACAGTA 59.080 33.333 15.89 3.08 0.00 2.74
1962 2376 7.855904 AGAACATTTTTGTAGTAAGCAGAAACG 59.144 33.333 0.00 0.00 0.00 3.60
1963 2377 9.516314 AAGAACATTTTTGTAGTAAGCAGAAAC 57.484 29.630 0.00 0.00 0.00 2.78
1973 2392 8.149973 ACGTGTATGAAGAACATTTTTGTAGT 57.850 30.769 0.00 0.00 40.07 2.73
1992 2411 7.010460 CAGCATTCATCTCATCTTAAACGTGTA 59.990 37.037 0.00 0.00 0.00 2.90
2005 2424 3.277142 AGCATGTCAGCATTCATCTCA 57.723 42.857 0.00 0.00 36.85 3.27
2006 2425 3.792459 GCAAGCATGTCAGCATTCATCTC 60.792 47.826 0.00 0.00 36.85 2.75
2041 2460 6.813649 TCCTTGAACTTCTTGATCTGTAATCG 59.186 38.462 0.00 0.00 0.00 3.34
2277 2699 3.746792 TTCTCAGATCCCAGAGTGAGA 57.253 47.619 6.11 6.11 42.87 3.27
2503 2931 6.258507 GGCATCATCCCATTGTTTCATTAAAC 59.741 38.462 0.00 0.00 44.40 2.01
2511 2939 2.391678 GGAGGCATCATCCCATTGTTT 58.608 47.619 0.00 0.00 0.00 2.83
2579 3016 4.782019 TCTCAGAGAAAGAACAGAGAGC 57.218 45.455 0.00 0.00 0.00 4.09
2634 3075 1.068741 GTCATTAGGCCTCAGTACCCG 59.931 57.143 9.68 0.00 0.00 5.28
2637 3078 3.197983 ACCTTGTCATTAGGCCTCAGTAC 59.802 47.826 9.68 4.74 36.17 2.73
2662 3103 4.574013 GCTCTGATCCGATTCAAAATCACT 59.426 41.667 0.00 0.00 0.00 3.41
2669 3110 4.206477 TCAAAGCTCTGATCCGATTCAA 57.794 40.909 0.00 0.00 0.00 2.69
2671 3112 5.755375 TGTTATCAAAGCTCTGATCCGATTC 59.245 40.000 5.63 0.00 37.27 2.52
2675 3116 3.806521 CCTGTTATCAAAGCTCTGATCCG 59.193 47.826 5.63 0.00 37.27 4.18
2680 3121 3.247173 GCGATCCTGTTATCAAAGCTCTG 59.753 47.826 0.00 0.00 0.00 3.35
2681 3122 3.118629 TGCGATCCTGTTATCAAAGCTCT 60.119 43.478 0.00 0.00 0.00 4.09
2685 3126 5.200454 CGATTTGCGATCCTGTTATCAAAG 58.800 41.667 0.00 0.00 44.57 2.77
2692 3133 3.520290 TCTACGATTTGCGATCCTGTT 57.480 42.857 0.00 0.00 44.57 3.16
2693 3134 3.520290 TTCTACGATTTGCGATCCTGT 57.480 42.857 0.00 0.00 44.57 4.00
2696 3137 4.745125 TGAAGATTCTACGATTTGCGATCC 59.255 41.667 0.00 0.00 44.57 3.36
2701 3142 5.810587 TGGTAGTGAAGATTCTACGATTTGC 59.189 40.000 0.00 0.00 37.84 3.68
2715 3181 2.719739 TCTACGGTCCTGGTAGTGAAG 58.280 52.381 0.00 0.00 38.74 3.02
2719 3185 3.504375 ACTTTTCTACGGTCCTGGTAGT 58.496 45.455 0.00 0.00 38.74 2.73
2729 3195 9.079833 TCGTTCATAAATTCTACTTTTCTACGG 57.920 33.333 0.00 0.00 0.00 4.02
2770 3236 8.137437 CAGAATCACAACCAAAACTAACTCATT 58.863 33.333 0.00 0.00 0.00 2.57
2772 3238 6.826231 TCAGAATCACAACCAAAACTAACTCA 59.174 34.615 0.00 0.00 0.00 3.41
2847 3313 4.074970 GCCAACAGAAATCCTTCTCAAGA 58.925 43.478 0.00 0.00 40.05 3.02
2884 3350 2.672651 CCCACGCATGCTGAACCA 60.673 61.111 17.13 0.00 0.00 3.67
2887 3353 4.695993 TCGCCCACGCATGCTGAA 62.696 61.111 17.13 0.00 39.84 3.02
2926 3392 1.202758 TCCGTCTCAGCAACACCAATT 60.203 47.619 0.00 0.00 0.00 2.32
2969 3435 4.114997 CCCGGTTGATGCAACGGC 62.115 66.667 0.00 0.00 44.36 5.68
3041 3507 1.153086 AGGCGACAAGGATGATGGC 60.153 57.895 0.00 0.00 0.00 4.40
3168 3652 2.246588 AGGATATCCCCGATTCCCGATA 59.753 50.000 18.56 0.00 37.27 2.92
3171 3655 2.032620 CTAGGATATCCCCGATTCCCG 58.967 57.143 18.56 0.00 36.42 5.14
3174 3658 2.100989 ACGCTAGGATATCCCCGATTC 58.899 52.381 25.02 8.37 36.42 2.52
3192 3681 5.004821 ACGTACGTATGTTCTAGTCTACACG 59.995 44.000 21.41 4.78 0.00 4.49
3195 3684 6.036083 TCCAACGTACGTATGTTCTAGTCTAC 59.964 42.308 26.37 0.00 33.41 2.59
3208 6589 8.557592 AGATAATATCTCATCCAACGTACGTA 57.442 34.615 23.12 6.57 33.42 3.57
3209 6590 7.450124 AGATAATATCTCATCCAACGTACGT 57.550 36.000 16.72 16.72 33.42 3.57
3254 6636 1.709578 AGCCGGATAAGCTCATCTGA 58.290 50.000 5.05 0.00 34.91 3.27
3304 6686 6.514541 GCATGCACAATGATCTAACTTAGCAT 60.515 38.462 14.21 0.00 38.72 3.79
3322 6704 1.086696 ATTCTGTACACGGCATGCAC 58.913 50.000 21.36 9.17 0.00 4.57
3365 6747 4.017126 ACTTAAGCCAACCTTATCCAAGC 58.983 43.478 1.29 0.00 36.00 4.01
3389 6772 8.530269 ACTTGAATTTTGATTTCTTGCAGATC 57.470 30.769 0.00 0.00 0.00 2.75
3485 6871 6.905544 TTTGTTGTTATGTCGTGTACAGAA 57.094 33.333 0.00 0.00 42.70 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.