Multiple sequence alignment - TraesCS2D01G096000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G096000 chr2D 100.000 2987 0 0 1 2987 48132084 48135070 0.000000e+00 5517.0
1 TraesCS2D01G096000 chr2B 89.976 2494 119 52 541 2984 75846928 75849340 0.000000e+00 3099.0
2 TraesCS2D01G096000 chr2B 94.714 454 23 1 11 463 156588999 156589452 0.000000e+00 704.0
3 TraesCS2D01G096000 chr2B 100.000 30 0 0 2957 2986 75897140 75897169 4.160000e-04 56.5
4 TraesCS2D01G096000 chr2A 91.275 1914 64 30 471 2330 51009196 51007332 0.000000e+00 2514.0
5 TraesCS2D01G096000 chr2A 87.820 665 53 11 2330 2987 51007295 51006652 0.000000e+00 754.0
6 TraesCS2D01G096000 chr1B 94.923 453 23 0 11 463 644278390 644278842 0.000000e+00 710.0
7 TraesCS2D01G096000 chr1B 94.348 460 26 0 4 463 25227569 25227110 0.000000e+00 706.0
8 TraesCS2D01G096000 chr1B 87.129 202 24 2 1156 1356 659780379 659780179 8.330000e-56 228.0
9 TraesCS2D01G096000 chr6B 94.714 454 23 1 11 463 21063595 21064048 0.000000e+00 704.0
10 TraesCS2D01G096000 chr6D 94.143 461 25 1 6 464 315652979 315652519 0.000000e+00 701.0
11 TraesCS2D01G096000 chr6D 93.913 460 27 1 6 464 461515676 461515217 0.000000e+00 693.0
12 TraesCS2D01G096000 chr4D 94.493 454 23 1 12 463 315601113 315600660 0.000000e+00 699.0
13 TraesCS2D01G096000 chr4D 88.961 308 34 0 1160 1467 315597323 315597630 6.040000e-102 381.0
14 TraesCS2D01G096000 chr7B 93.926 461 25 2 11 470 74093126 74092668 0.000000e+00 693.0
15 TraesCS2D01G096000 chr3D 93.913 460 26 2 6 463 559109026 559109485 0.000000e+00 693.0
16 TraesCS2D01G096000 chr3D 82.456 399 68 2 1070 1467 525917775 525917378 6.130000e-92 348.0
17 TraesCS2D01G096000 chr4B 88.599 307 35 0 1160 1466 393406270 393406576 1.010000e-99 374.0
18 TraesCS2D01G096000 chr4A 88.525 305 35 0 1163 1467 159294850 159294546 1.310000e-98 370.0
19 TraesCS2D01G096000 chr1A 82.428 313 50 4 1160 1470 58946920 58947229 4.910000e-68 268.0
20 TraesCS2D01G096000 chr1A 88.384 198 21 2 1160 1356 569139382 569139186 1.380000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G096000 chr2D 48132084 48135070 2986 False 5517 5517 100.0000 1 2987 1 chr2D.!!$F1 2986
1 TraesCS2D01G096000 chr2B 75846928 75849340 2412 False 3099 3099 89.9760 541 2984 1 chr2B.!!$F1 2443
2 TraesCS2D01G096000 chr2A 51006652 51009196 2544 True 1634 2514 89.5475 471 2987 2 chr2A.!!$R1 2516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.032952 TCGGAAAGTTGAGACGGTGG 59.967 55.0 0.0 0.0 0.00 4.61 F
875 908 0.104671 GCCAGCCACTGATCTCTCTC 59.895 60.0 0.0 0.0 32.44 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1659 0.325602 TGCATGACAGCTCCACATCA 59.674 50.0 0.0 0.0 34.99 3.07 R
2427 2548 0.033504 TTGCTTCGTCACCTCCTCAC 59.966 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.580904 TCGGAAAGTTGAGACGGTG 57.419 52.632 0.00 0.00 0.00 4.94
19 20 0.032952 TCGGAAAGTTGAGACGGTGG 59.967 55.000 0.00 0.00 0.00 4.61
20 21 1.566018 CGGAAAGTTGAGACGGTGGC 61.566 60.000 0.00 0.00 0.00 5.01
21 22 1.566018 GGAAAGTTGAGACGGTGGCG 61.566 60.000 0.00 0.00 0.00 5.69
22 23 1.566018 GAAAGTTGAGACGGTGGCGG 61.566 60.000 0.00 0.00 0.00 6.13
23 24 4.681978 AGTTGAGACGGTGGCGGC 62.682 66.667 0.00 0.00 0.00 6.53
24 25 4.681978 GTTGAGACGGTGGCGGCT 62.682 66.667 11.43 0.00 0.00 5.52
25 26 4.373116 TTGAGACGGTGGCGGCTC 62.373 66.667 11.43 6.49 0.00 4.70
27 28 4.500116 GAGACGGTGGCGGCTCTC 62.500 72.222 11.43 10.39 0.00 3.20
29 30 4.803426 GACGGTGGCGGCTCTCTG 62.803 72.222 11.43 8.47 0.00 3.35
31 32 4.069232 CGGTGGCGGCTCTCTGAA 62.069 66.667 11.43 0.00 0.00 3.02
32 33 2.125350 GGTGGCGGCTCTCTGAAG 60.125 66.667 11.43 0.00 0.00 3.02
33 34 2.650116 GGTGGCGGCTCTCTGAAGA 61.650 63.158 11.43 0.00 0.00 2.87
34 35 1.519719 GTGGCGGCTCTCTGAAGAT 59.480 57.895 11.43 0.00 0.00 2.40
35 36 0.809241 GTGGCGGCTCTCTGAAGATG 60.809 60.000 11.43 0.00 0.00 2.90
36 37 1.227497 GGCGGCTCTCTGAAGATGG 60.227 63.158 0.00 0.00 0.00 3.51
37 38 1.680522 GGCGGCTCTCTGAAGATGGA 61.681 60.000 0.00 0.00 0.00 3.41
38 39 0.176680 GCGGCTCTCTGAAGATGGAA 59.823 55.000 0.00 0.00 0.00 3.53
39 40 1.202627 GCGGCTCTCTGAAGATGGAAT 60.203 52.381 0.00 0.00 0.00 3.01
40 41 2.036475 GCGGCTCTCTGAAGATGGAATA 59.964 50.000 0.00 0.00 0.00 1.75
41 42 3.493350 GCGGCTCTCTGAAGATGGAATAA 60.493 47.826 0.00 0.00 0.00 1.40
42 43 4.697514 CGGCTCTCTGAAGATGGAATAAA 58.302 43.478 0.00 0.00 0.00 1.40
43 44 4.749099 CGGCTCTCTGAAGATGGAATAAAG 59.251 45.833 0.00 0.00 0.00 1.85
44 45 5.062528 GGCTCTCTGAAGATGGAATAAAGG 58.937 45.833 0.00 0.00 0.00 3.11
45 46 5.397334 GGCTCTCTGAAGATGGAATAAAGGT 60.397 44.000 0.00 0.00 0.00 3.50
46 47 5.757808 GCTCTCTGAAGATGGAATAAAGGTC 59.242 44.000 0.00 0.00 0.00 3.85
47 48 6.407979 GCTCTCTGAAGATGGAATAAAGGTCT 60.408 42.308 0.00 0.00 0.00 3.85
48 49 7.118496 TCTCTGAAGATGGAATAAAGGTCTC 57.882 40.000 0.00 0.00 0.00 3.36
49 50 6.098982 TCTCTGAAGATGGAATAAAGGTCTCC 59.901 42.308 0.00 0.00 0.00 3.71
50 51 5.131142 TCTGAAGATGGAATAAAGGTCTCCC 59.869 44.000 0.00 0.00 0.00 4.30
51 52 4.166144 TGAAGATGGAATAAAGGTCTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
53 54 3.977326 AGATGGAATAAAGGTCTCCCCTC 59.023 47.826 0.00 0.00 45.47 4.30
54 55 2.488836 TGGAATAAAGGTCTCCCCTCC 58.511 52.381 0.00 0.00 45.47 4.30
55 56 2.047296 TGGAATAAAGGTCTCCCCTCCT 59.953 50.000 0.00 0.00 45.47 3.69
56 57 3.276578 TGGAATAAAGGTCTCCCCTCCTA 59.723 47.826 0.00 0.00 45.47 2.94
57 58 3.904965 GGAATAAAGGTCTCCCCTCCTAG 59.095 52.174 0.00 0.00 45.47 3.02
58 59 2.473576 TAAAGGTCTCCCCTCCTAGC 57.526 55.000 0.00 0.00 45.47 3.42
59 60 0.326713 AAAGGTCTCCCCTCCTAGCC 60.327 60.000 0.00 0.00 45.47 3.93
60 61 2.122769 GGTCTCCCCTCCTAGCCC 60.123 72.222 0.00 0.00 0.00 5.19
61 62 2.122769 GTCTCCCCTCCTAGCCCC 60.123 72.222 0.00 0.00 0.00 5.80
62 63 3.449126 TCTCCCCTCCTAGCCCCC 61.449 72.222 0.00 0.00 0.00 5.40
63 64 4.944069 CTCCCCTCCTAGCCCCCG 62.944 77.778 0.00 0.00 0.00 5.73
65 66 4.817909 CCCCTCCTAGCCCCCGTT 62.818 72.222 0.00 0.00 0.00 4.44
66 67 3.162154 CCCTCCTAGCCCCCGTTC 61.162 72.222 0.00 0.00 0.00 3.95
67 68 3.162154 CCTCCTAGCCCCCGTTCC 61.162 72.222 0.00 0.00 0.00 3.62
68 69 3.537874 CTCCTAGCCCCCGTTCCG 61.538 72.222 0.00 0.00 0.00 4.30
80 81 4.424566 GTTCCGGCGGTGCGTCTA 62.425 66.667 27.32 0.36 0.00 2.59
81 82 4.124351 TTCCGGCGGTGCGTCTAG 62.124 66.667 27.32 0.00 0.00 2.43
93 94 2.665777 CGTCTAGCATCGTTGGTGG 58.334 57.895 8.40 5.61 34.79 4.61
94 95 0.806102 CGTCTAGCATCGTTGGTGGG 60.806 60.000 8.40 2.07 34.79 4.61
95 96 1.090052 GTCTAGCATCGTTGGTGGGC 61.090 60.000 8.40 3.19 34.79 5.36
96 97 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
97 98 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
98 99 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
99 100 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
100 101 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
101 102 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
102 103 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
103 104 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
104 105 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
107 108 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
108 109 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
109 110 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
110 111 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
111 112 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
112 113 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
117 118 3.311110 GGAGGTGTGTCTCCGGCA 61.311 66.667 0.00 0.00 43.19 5.69
118 119 2.660064 GGAGGTGTGTCTCCGGCAT 61.660 63.158 0.00 0.00 43.19 4.40
119 120 1.327690 GGAGGTGTGTCTCCGGCATA 61.328 60.000 0.00 0.00 43.19 3.14
120 121 0.753262 GAGGTGTGTCTCCGGCATAT 59.247 55.000 0.00 0.00 0.00 1.78
121 122 1.139058 GAGGTGTGTCTCCGGCATATT 59.861 52.381 0.00 0.00 0.00 1.28
122 123 1.559682 AGGTGTGTCTCCGGCATATTT 59.440 47.619 0.00 0.00 0.00 1.40
123 124 2.769663 AGGTGTGTCTCCGGCATATTTA 59.230 45.455 0.00 0.00 0.00 1.40
124 125 3.391296 AGGTGTGTCTCCGGCATATTTAT 59.609 43.478 0.00 0.00 0.00 1.40
125 126 3.746492 GGTGTGTCTCCGGCATATTTATC 59.254 47.826 0.00 0.00 0.00 1.75
126 127 4.503296 GGTGTGTCTCCGGCATATTTATCT 60.503 45.833 0.00 0.00 0.00 1.98
127 128 5.057149 GTGTGTCTCCGGCATATTTATCTT 58.943 41.667 0.00 0.00 0.00 2.40
128 129 5.527582 GTGTGTCTCCGGCATATTTATCTTT 59.472 40.000 0.00 0.00 0.00 2.52
129 130 5.527214 TGTGTCTCCGGCATATTTATCTTTG 59.473 40.000 0.00 0.00 0.00 2.77
130 131 5.049405 GTGTCTCCGGCATATTTATCTTTGG 60.049 44.000 0.00 0.00 0.00 3.28
131 132 5.063880 GTCTCCGGCATATTTATCTTTGGT 58.936 41.667 0.00 0.00 0.00 3.67
132 133 5.049405 GTCTCCGGCATATTTATCTTTGGTG 60.049 44.000 0.00 0.00 0.00 4.17
133 134 4.141287 TCCGGCATATTTATCTTTGGTGG 58.859 43.478 0.00 0.00 0.00 4.61
134 135 4.141287 CCGGCATATTTATCTTTGGTGGA 58.859 43.478 0.00 0.00 0.00 4.02
135 136 4.766891 CCGGCATATTTATCTTTGGTGGAT 59.233 41.667 0.00 0.00 0.00 3.41
136 137 5.243730 CCGGCATATTTATCTTTGGTGGATT 59.756 40.000 0.00 0.00 0.00 3.01
137 138 6.239289 CCGGCATATTTATCTTTGGTGGATTT 60.239 38.462 0.00 0.00 0.00 2.17
138 139 6.642131 CGGCATATTTATCTTTGGTGGATTTG 59.358 38.462 0.00 0.00 0.00 2.32
139 140 6.424812 GGCATATTTATCTTTGGTGGATTTGC 59.575 38.462 0.00 0.00 0.00 3.68
140 141 7.212274 GCATATTTATCTTTGGTGGATTTGCT 58.788 34.615 0.00 0.00 0.00 3.91
141 142 7.383300 GCATATTTATCTTTGGTGGATTTGCTC 59.617 37.037 0.00 0.00 0.00 4.26
142 143 4.963276 TTATCTTTGGTGGATTTGCTCG 57.037 40.909 0.00 0.00 0.00 5.03
143 144 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
144 145 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
145 146 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
146 147 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
147 148 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
148 149 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
149 150 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
150 151 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
151 152 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
152 153 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
153 154 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
154 155 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
155 156 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
156 157 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
157 158 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
158 159 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
159 160 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
160 161 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
161 162 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
162 163 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
163 164 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
164 165 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
165 166 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
166 167 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
167 168 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
168 169 1.775208 CGTCGTTGTTCGTCTACGTTT 59.225 47.619 0.00 0.00 43.41 3.60
169 170 2.406368 CGTCGTTGTTCGTCTACGTTTG 60.406 50.000 0.00 0.00 43.41 2.93
170 171 2.531508 GTCGTTGTTCGTCTACGTTTGT 59.468 45.455 0.00 0.00 43.41 2.83
171 172 2.531103 TCGTTGTTCGTCTACGTTTGTG 59.469 45.455 0.00 0.00 43.41 3.33
172 173 2.279659 CGTTGTTCGTCTACGTTTGTGT 59.720 45.455 0.00 0.00 39.58 3.72
173 174 3.590311 GTTGTTCGTCTACGTTTGTGTG 58.410 45.455 0.00 0.00 40.80 3.82
174 175 2.878580 TGTTCGTCTACGTTTGTGTGT 58.121 42.857 0.00 0.00 40.80 3.72
175 176 2.853594 TGTTCGTCTACGTTTGTGTGTC 59.146 45.455 0.00 0.00 40.80 3.67
176 177 3.111098 GTTCGTCTACGTTTGTGTGTCT 58.889 45.455 0.00 0.00 40.80 3.41
177 178 3.425577 TCGTCTACGTTTGTGTGTCTT 57.574 42.857 0.00 0.00 40.80 3.01
178 179 3.772932 TCGTCTACGTTTGTGTGTCTTT 58.227 40.909 0.00 0.00 40.80 2.52
179 180 3.548668 TCGTCTACGTTTGTGTGTCTTTG 59.451 43.478 0.00 0.00 40.80 2.77
180 181 3.302221 CGTCTACGTTTGTGTGTCTTTGG 60.302 47.826 0.00 0.00 34.11 3.28
181 182 3.619929 GTCTACGTTTGTGTGTCTTTGGT 59.380 43.478 0.00 0.00 0.00 3.67
182 183 4.093850 GTCTACGTTTGTGTGTCTTTGGTT 59.906 41.667 0.00 0.00 0.00 3.67
183 184 3.926821 ACGTTTGTGTGTCTTTGGTTT 57.073 38.095 0.00 0.00 0.00 3.27
184 185 3.570559 ACGTTTGTGTGTCTTTGGTTTG 58.429 40.909 0.00 0.00 0.00 2.93
185 186 2.920490 CGTTTGTGTGTCTTTGGTTTGG 59.080 45.455 0.00 0.00 0.00 3.28
186 187 3.366476 CGTTTGTGTGTCTTTGGTTTGGA 60.366 43.478 0.00 0.00 0.00 3.53
187 188 4.676723 CGTTTGTGTGTCTTTGGTTTGGAT 60.677 41.667 0.00 0.00 0.00 3.41
188 189 4.647424 TTGTGTGTCTTTGGTTTGGATC 57.353 40.909 0.00 0.00 0.00 3.36
189 190 2.955660 TGTGTGTCTTTGGTTTGGATCC 59.044 45.455 4.20 4.20 0.00 3.36
190 191 3.222603 GTGTGTCTTTGGTTTGGATCCT 58.777 45.455 14.23 0.00 0.00 3.24
191 192 3.636764 GTGTGTCTTTGGTTTGGATCCTT 59.363 43.478 14.23 0.00 0.00 3.36
192 193 3.888930 TGTGTCTTTGGTTTGGATCCTTC 59.111 43.478 14.23 3.17 0.00 3.46
193 194 3.255888 GTGTCTTTGGTTTGGATCCTTCC 59.744 47.826 14.23 12.64 42.94 3.46
194 195 2.488153 GTCTTTGGTTTGGATCCTTCCG 59.512 50.000 14.23 1.24 45.89 4.30
195 196 2.373836 TCTTTGGTTTGGATCCTTCCGA 59.626 45.455 14.23 9.47 45.89 4.55
196 197 3.010138 TCTTTGGTTTGGATCCTTCCGAT 59.990 43.478 14.23 0.00 45.89 4.18
197 198 2.710096 TGGTTTGGATCCTTCCGATC 57.290 50.000 14.23 0.00 45.89 3.69
198 199 2.196595 TGGTTTGGATCCTTCCGATCT 58.803 47.619 14.23 0.00 45.90 2.75
199 200 3.380393 TGGTTTGGATCCTTCCGATCTA 58.620 45.455 14.23 0.00 45.90 1.98
200 201 3.134081 TGGTTTGGATCCTTCCGATCTAC 59.866 47.826 14.23 0.00 45.90 2.59
201 202 3.381949 GTTTGGATCCTTCCGATCTACG 58.618 50.000 14.23 0.00 45.90 3.51
202 203 2.359981 TGGATCCTTCCGATCTACGT 57.640 50.000 14.23 0.00 45.90 3.57
203 204 2.662866 TGGATCCTTCCGATCTACGTT 58.337 47.619 14.23 0.00 45.90 3.99
204 205 3.824133 TGGATCCTTCCGATCTACGTTA 58.176 45.455 14.23 0.00 45.90 3.18
205 206 4.404640 TGGATCCTTCCGATCTACGTTAT 58.595 43.478 14.23 0.00 45.90 1.89
206 207 4.831155 TGGATCCTTCCGATCTACGTTATT 59.169 41.667 14.23 0.00 45.90 1.40
207 208 5.303589 TGGATCCTTCCGATCTACGTTATTT 59.696 40.000 14.23 0.00 45.90 1.40
208 209 6.183360 TGGATCCTTCCGATCTACGTTATTTT 60.183 38.462 14.23 0.00 45.90 1.82
209 210 6.704937 GGATCCTTCCGATCTACGTTATTTTT 59.295 38.462 3.84 0.00 45.90 1.94
210 211 7.095732 GGATCCTTCCGATCTACGTTATTTTTC 60.096 40.741 3.84 0.00 45.90 2.29
211 212 6.632909 TCCTTCCGATCTACGTTATTTTTCA 58.367 36.000 0.00 0.00 40.78 2.69
212 213 7.270047 TCCTTCCGATCTACGTTATTTTTCAT 58.730 34.615 0.00 0.00 40.78 2.57
213 214 7.437267 TCCTTCCGATCTACGTTATTTTTCATC 59.563 37.037 0.00 0.00 40.78 2.92
214 215 6.742999 TCCGATCTACGTTATTTTTCATCG 57.257 37.500 0.00 0.00 40.78 3.84
215 216 5.901509 CCGATCTACGTTATTTTTCATCGG 58.098 41.667 0.00 2.86 43.93 4.18
216 217 5.363517 CGATCTACGTTATTTTTCATCGGC 58.636 41.667 0.00 0.00 37.22 5.54
217 218 4.765281 TCTACGTTATTTTTCATCGGCG 57.235 40.909 0.00 0.00 0.00 6.46
218 219 2.817538 ACGTTATTTTTCATCGGCGG 57.182 45.000 7.21 0.00 0.00 6.13
219 220 1.202098 ACGTTATTTTTCATCGGCGGC 60.202 47.619 7.21 0.00 0.00 6.53
220 221 1.462791 GTTATTTTTCATCGGCGGCG 58.537 50.000 27.15 27.15 0.00 6.46
221 222 0.378962 TTATTTTTCATCGGCGGCGG 59.621 50.000 31.73 16.54 0.00 6.13
222 223 0.745128 TATTTTTCATCGGCGGCGGT 60.745 50.000 31.73 23.77 0.00 5.68
223 224 1.591504 ATTTTTCATCGGCGGCGGTT 61.592 50.000 31.73 16.58 0.00 4.44
224 225 2.465097 TTTTTCATCGGCGGCGGTTG 62.465 55.000 31.73 26.46 0.00 3.77
233 234 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
234 235 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
235 236 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
236 237 2.113139 CGGTTGCTGTTCTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
237 238 2.260869 CGGTTGCTGTTCTGGGGTG 61.261 63.158 0.00 0.00 0.00 4.61
238 239 2.564721 GGTTGCTGTTCTGGGGTGC 61.565 63.158 0.00 0.00 0.00 5.01
239 240 1.529244 GTTGCTGTTCTGGGGTGCT 60.529 57.895 0.00 0.00 0.00 4.40
240 241 1.529010 TTGCTGTTCTGGGGTGCTG 60.529 57.895 0.00 0.00 0.00 4.41
241 242 2.674380 GCTGTTCTGGGGTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
242 243 2.839098 CTGTTCTGGGGTGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
243 244 1.302832 CTGTTCTGGGGTGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
244 245 2.034221 GTTCTGGGGTGCTGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
245 246 2.121963 TTCTGGGGTGCTGGTCCT 60.122 61.111 0.00 0.00 0.00 3.85
246 247 1.159905 TTCTGGGGTGCTGGTCCTA 59.840 57.895 0.00 0.00 0.00 2.94
247 248 0.253160 TTCTGGGGTGCTGGTCCTAT 60.253 55.000 0.00 0.00 0.00 2.57
248 249 0.982852 TCTGGGGTGCTGGTCCTATG 60.983 60.000 0.00 0.00 0.00 2.23
249 250 1.987807 CTGGGGTGCTGGTCCTATGG 61.988 65.000 0.00 0.00 0.00 2.74
250 251 2.757124 GGGGTGCTGGTCCTATGGG 61.757 68.421 0.00 0.00 0.00 4.00
251 252 2.757124 GGGTGCTGGTCCTATGGGG 61.757 68.421 0.00 0.00 0.00 4.96
252 253 2.001269 GGTGCTGGTCCTATGGGGT 61.001 63.158 0.00 0.00 36.25 4.95
253 254 1.527370 GTGCTGGTCCTATGGGGTC 59.473 63.158 0.00 0.00 36.25 4.46
254 255 0.983378 GTGCTGGTCCTATGGGGTCT 60.983 60.000 0.00 0.00 36.25 3.85
255 256 0.253160 TGCTGGTCCTATGGGGTCTT 60.253 55.000 0.00 0.00 36.25 3.01
256 257 1.009060 TGCTGGTCCTATGGGGTCTTA 59.991 52.381 0.00 0.00 36.25 2.10
257 258 1.694696 GCTGGTCCTATGGGGTCTTAG 59.305 57.143 0.00 0.00 36.25 2.18
258 259 1.694696 CTGGTCCTATGGGGTCTTAGC 59.305 57.143 0.00 0.00 36.25 3.09
259 260 1.009060 TGGTCCTATGGGGTCTTAGCA 59.991 52.381 0.00 0.00 36.25 3.49
260 261 1.416772 GGTCCTATGGGGTCTTAGCAC 59.583 57.143 0.00 0.00 36.25 4.40
261 262 1.068741 GTCCTATGGGGTCTTAGCACG 59.931 57.143 0.00 0.00 36.25 5.34
262 263 0.393077 CCTATGGGGTCTTAGCACGG 59.607 60.000 0.00 0.00 0.00 4.94
263 264 0.249911 CTATGGGGTCTTAGCACGGC 60.250 60.000 0.00 0.00 0.00 5.68
264 265 2.023414 TATGGGGTCTTAGCACGGCG 62.023 60.000 4.80 4.80 0.00 6.46
265 266 3.766691 GGGGTCTTAGCACGGCGA 61.767 66.667 16.62 0.00 0.00 5.54
266 267 2.508663 GGGTCTTAGCACGGCGAC 60.509 66.667 16.62 5.01 0.00 5.19
267 268 2.572284 GGTCTTAGCACGGCGACT 59.428 61.111 16.62 13.42 0.00 4.18
268 269 1.080025 GGTCTTAGCACGGCGACTT 60.080 57.895 16.62 0.00 0.00 3.01
269 270 1.077089 GGTCTTAGCACGGCGACTTC 61.077 60.000 16.62 0.00 0.00 3.01
270 271 1.077089 GTCTTAGCACGGCGACTTCC 61.077 60.000 16.62 0.00 0.00 3.46
271 272 1.810030 CTTAGCACGGCGACTTCCC 60.810 63.158 16.62 0.00 0.00 3.97
278 279 3.281240 GGCGACTTCCCGACTGTA 58.719 61.111 0.00 0.00 34.11 2.74
279 280 1.814527 GGCGACTTCCCGACTGTAT 59.185 57.895 0.00 0.00 34.11 2.29
280 281 1.027357 GGCGACTTCCCGACTGTATA 58.973 55.000 0.00 0.00 34.11 1.47
281 282 1.268948 GGCGACTTCCCGACTGTATAC 60.269 57.143 0.00 0.00 34.11 1.47
282 283 1.674962 GCGACTTCCCGACTGTATACT 59.325 52.381 4.17 0.00 0.00 2.12
283 284 2.874701 GCGACTTCCCGACTGTATACTA 59.125 50.000 4.17 0.00 0.00 1.82
284 285 3.303659 GCGACTTCCCGACTGTATACTAC 60.304 52.174 4.17 0.00 0.00 2.73
285 286 3.873361 CGACTTCCCGACTGTATACTACA 59.127 47.826 4.17 0.00 37.13 2.74
286 287 4.333649 CGACTTCCCGACTGTATACTACAA 59.666 45.833 4.17 0.00 38.38 2.41
287 288 5.573337 ACTTCCCGACTGTATACTACAAC 57.427 43.478 4.17 0.00 38.38 3.32
288 289 5.012239 ACTTCCCGACTGTATACTACAACA 58.988 41.667 4.17 0.00 38.38 3.33
289 290 4.970662 TCCCGACTGTATACTACAACAC 57.029 45.455 4.17 0.00 38.38 3.32
290 291 4.334552 TCCCGACTGTATACTACAACACA 58.665 43.478 4.17 0.00 38.38 3.72
291 292 4.951715 TCCCGACTGTATACTACAACACAT 59.048 41.667 4.17 0.00 38.38 3.21
292 293 5.419788 TCCCGACTGTATACTACAACACATT 59.580 40.000 4.17 0.00 38.38 2.71
293 294 5.518847 CCCGACTGTATACTACAACACATTG 59.481 44.000 4.17 0.00 41.98 2.82
301 302 2.049248 CAACACATTGTGCCCGGC 60.049 61.111 16.62 1.04 36.98 6.13
302 303 2.203480 AACACATTGTGCCCGGCT 60.203 55.556 16.62 0.00 36.98 5.52
303 304 2.268076 AACACATTGTGCCCGGCTC 61.268 57.895 16.62 7.85 36.98 4.70
304 305 3.443045 CACATTGTGCCCGGCTCC 61.443 66.667 11.61 1.66 0.00 4.70
322 323 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
323 324 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
324 325 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
325 326 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
326 327 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
351 352 4.436998 CCTTCGGCTCGCTTCGGT 62.437 66.667 0.00 0.00 0.00 4.69
352 353 3.181967 CTTCGGCTCGCTTCGGTG 61.182 66.667 0.00 0.00 0.00 4.94
356 357 3.793144 GGCTCGCTTCGGTGCTTG 61.793 66.667 0.00 0.00 0.00 4.01
357 358 3.044305 GCTCGCTTCGGTGCTTGT 61.044 61.111 0.00 0.00 0.00 3.16
358 359 1.736645 GCTCGCTTCGGTGCTTGTA 60.737 57.895 0.00 0.00 0.00 2.41
359 360 1.687494 GCTCGCTTCGGTGCTTGTAG 61.687 60.000 0.00 0.00 0.00 2.74
360 361 0.388649 CTCGCTTCGGTGCTTGTAGT 60.389 55.000 0.00 0.00 0.00 2.73
361 362 0.388134 TCGCTTCGGTGCTTGTAGTC 60.388 55.000 0.00 0.00 0.00 2.59
362 363 1.674611 CGCTTCGGTGCTTGTAGTCG 61.675 60.000 0.00 0.00 0.00 4.18
363 364 0.666577 GCTTCGGTGCTTGTAGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
364 365 1.337821 CTTCGGTGCTTGTAGTCGTC 58.662 55.000 0.00 0.00 0.00 4.20
365 366 0.386352 TTCGGTGCTTGTAGTCGTCG 60.386 55.000 0.00 0.00 0.00 5.12
366 367 2.434134 CGGTGCTTGTAGTCGTCGC 61.434 63.158 0.00 0.00 0.00 5.19
367 368 1.080705 GGTGCTTGTAGTCGTCGCT 60.081 57.895 0.00 0.00 0.00 4.93
368 369 0.169672 GGTGCTTGTAGTCGTCGCTA 59.830 55.000 0.00 0.00 0.00 4.26
369 370 1.536149 GTGCTTGTAGTCGTCGCTAG 58.464 55.000 0.00 0.00 0.00 3.42
370 371 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
371 372 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
372 373 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
373 374 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
374 375 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
375 376 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
376 377 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
377 378 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
378 379 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
379 380 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
380 381 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
381 382 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
382 383 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
383 384 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
384 385 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
385 386 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
386 387 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
387 388 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
388 389 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
389 390 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
390 391 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
391 392 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
392 393 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
393 394 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
394 395 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
395 396 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
396 397 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
397 398 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
398 399 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
399 400 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
420 421 9.790389 TTTTATTTTTGATGTTCGTTGTACTGT 57.210 25.926 0.00 0.00 0.00 3.55
421 422 8.996988 TTATTTTTGATGTTCGTTGTACTGTC 57.003 30.769 0.00 0.00 0.00 3.51
422 423 6.424176 TTTTTGATGTTCGTTGTACTGTCA 57.576 33.333 0.00 0.00 0.00 3.58
423 424 6.612247 TTTTGATGTTCGTTGTACTGTCAT 57.388 33.333 0.00 0.00 0.00 3.06
424 425 5.590104 TTGATGTTCGTTGTACTGTCATG 57.410 39.130 0.00 0.00 0.00 3.07
425 426 4.877282 TGATGTTCGTTGTACTGTCATGA 58.123 39.130 0.00 0.00 0.00 3.07
426 427 5.478407 TGATGTTCGTTGTACTGTCATGAT 58.522 37.500 0.00 0.00 0.00 2.45
427 428 5.931724 TGATGTTCGTTGTACTGTCATGATT 59.068 36.000 0.00 0.00 0.00 2.57
428 429 5.590104 TGTTCGTTGTACTGTCATGATTG 57.410 39.130 0.00 0.00 0.00 2.67
429 430 5.293560 TGTTCGTTGTACTGTCATGATTGA 58.706 37.500 0.00 0.00 0.00 2.57
430 431 5.755861 TGTTCGTTGTACTGTCATGATTGAA 59.244 36.000 0.00 0.00 32.48 2.69
431 432 6.258947 TGTTCGTTGTACTGTCATGATTGAAA 59.741 34.615 0.00 0.00 32.48 2.69
432 433 6.852858 TCGTTGTACTGTCATGATTGAAAA 57.147 33.333 0.00 0.00 32.48 2.29
433 434 7.433708 TCGTTGTACTGTCATGATTGAAAAT 57.566 32.000 0.00 0.00 32.48 1.82
434 435 7.297391 TCGTTGTACTGTCATGATTGAAAATG 58.703 34.615 0.00 0.00 32.48 2.32
435 436 7.172361 TCGTTGTACTGTCATGATTGAAAATGA 59.828 33.333 0.00 0.00 32.48 2.57
436 437 7.802720 CGTTGTACTGTCATGATTGAAAATGAA 59.197 33.333 0.00 0.00 34.70 2.57
437 438 9.630098 GTTGTACTGTCATGATTGAAAATGAAT 57.370 29.630 0.00 0.00 34.70 2.57
492 493 5.497474 ACCGGTGTAGATGCTCTTATTTTT 58.503 37.500 6.12 0.00 0.00 1.94
511 512 2.905415 TTTCTACGGAGGGAGTACCA 57.095 50.000 0.00 0.00 43.89 3.25
512 513 3.393426 TTTCTACGGAGGGAGTACCAT 57.607 47.619 0.00 0.00 43.89 3.55
522 523 1.202222 GGGAGTACCATGTACGACACG 60.202 57.143 0.00 0.00 39.85 4.49
539 540 1.032794 ACGACTGAGCAGTGAAGTCA 58.967 50.000 8.03 6.14 42.66 3.41
540 541 1.615883 ACGACTGAGCAGTGAAGTCAT 59.384 47.619 8.03 3.73 42.66 3.06
541 542 2.820197 ACGACTGAGCAGTGAAGTCATA 59.180 45.455 8.03 0.00 42.66 2.15
542 543 3.175152 CGACTGAGCAGTGAAGTCATAC 58.825 50.000 8.03 0.00 42.66 2.39
543 544 3.366374 CGACTGAGCAGTGAAGTCATACA 60.366 47.826 8.03 0.00 42.66 2.29
545 546 3.576118 ACTGAGCAGTGAAGTCATACACT 59.424 43.478 1.71 0.00 46.32 3.55
565 567 3.181418 ACTGGACAGGGGTCAAAATCAAT 60.181 43.478 4.14 0.00 46.17 2.57
637 639 1.001624 GCGGGTTAGCGTCGTTAATT 58.998 50.000 4.80 0.00 0.00 1.40
662 664 2.739913 CGCTGTAATTCCAAAAGACGGA 59.260 45.455 0.00 0.00 0.00 4.69
772 788 4.748857 GCCTTCCATCATCCTCATCATCAA 60.749 45.833 0.00 0.00 0.00 2.57
773 789 5.004448 CCTTCCATCATCCTCATCATCAAG 58.996 45.833 0.00 0.00 0.00 3.02
774 790 5.456330 CCTTCCATCATCCTCATCATCAAGT 60.456 44.000 0.00 0.00 0.00 3.16
775 791 5.224821 TCCATCATCCTCATCATCAAGTC 57.775 43.478 0.00 0.00 0.00 3.01
777 793 6.080009 TCCATCATCCTCATCATCAAGTCTA 58.920 40.000 0.00 0.00 0.00 2.59
860 893 1.065854 ACCTACAGCAAAGCTAGCCAG 60.066 52.381 12.13 2.41 36.40 4.85
869 902 4.453093 GCTAGCCAGCCACTGATC 57.547 61.111 2.29 0.00 42.37 2.92
870 903 1.828768 GCTAGCCAGCCACTGATCT 59.171 57.895 2.29 0.00 42.37 2.75
871 904 0.249826 GCTAGCCAGCCACTGATCTC 60.250 60.000 2.29 0.00 42.37 2.75
872 905 1.412079 CTAGCCAGCCACTGATCTCT 58.588 55.000 0.00 0.00 32.44 3.10
873 906 1.340889 CTAGCCAGCCACTGATCTCTC 59.659 57.143 0.00 0.00 32.44 3.20
874 907 0.325484 AGCCAGCCACTGATCTCTCT 60.325 55.000 0.00 0.00 32.44 3.10
875 908 0.104671 GCCAGCCACTGATCTCTCTC 59.895 60.000 0.00 0.00 32.44 3.20
876 909 1.482954 CCAGCCACTGATCTCTCTCA 58.517 55.000 0.00 0.00 32.44 3.27
877 910 1.136695 CCAGCCACTGATCTCTCTCAC 59.863 57.143 0.00 0.00 32.44 3.51
878 911 2.101783 CAGCCACTGATCTCTCTCACT 58.898 52.381 0.00 0.00 32.44 3.41
879 912 2.099592 CAGCCACTGATCTCTCTCACTC 59.900 54.545 0.00 0.00 32.44 3.51
880 913 1.408702 GCCACTGATCTCTCTCACTCC 59.591 57.143 0.00 0.00 0.00 3.85
881 914 2.949963 GCCACTGATCTCTCTCACTCCT 60.950 54.545 0.00 0.00 0.00 3.69
938 984 0.464554 CTCTCCCGCCCTTTTCATCC 60.465 60.000 0.00 0.00 0.00 3.51
962 1008 6.598457 CCTCTCATCATTTGATCACCCATATC 59.402 42.308 0.00 0.00 32.72 1.63
965 1013 5.934043 TCATCATTTGATCACCCATATCGAC 59.066 40.000 0.00 0.00 31.21 4.20
980 1032 0.466739 TCGACCCGGATAGCTGCTAA 60.467 55.000 14.13 0.00 0.00 3.09
981 1033 0.603569 CGACCCGGATAGCTGCTAAT 59.396 55.000 14.13 2.50 0.00 1.73
982 1034 1.402984 CGACCCGGATAGCTGCTAATC 60.403 57.143 14.13 11.15 0.00 1.75
983 1035 1.618837 GACCCGGATAGCTGCTAATCA 59.381 52.381 14.13 0.00 0.00 2.57
998 1052 4.065088 GCTAATCACTTGTCTGTTGTGGA 58.935 43.478 0.00 0.00 33.04 4.02
1029 1083 2.611964 ATCAGCGGGGGATGAGAGGT 62.612 60.000 0.00 0.00 0.00 3.85
1034 1088 2.447714 GGGGGATGAGAGGTGAGGC 61.448 68.421 0.00 0.00 0.00 4.70
1062 1125 1.764054 CGGGGAGGAGGAGATGCTT 60.764 63.158 0.00 0.00 0.00 3.91
1119 1182 3.925238 GCCAACTACATCGCCGCG 61.925 66.667 6.39 6.39 0.00 6.46
1506 1572 3.323136 GACGTGATAGCGCAGGCG 61.323 66.667 11.47 9.68 46.35 5.52
1579 1645 4.689549 TCTTCGACCTCGGCCCCA 62.690 66.667 0.00 0.00 40.29 4.96
1863 1935 2.697761 CGAGACGTGGTGGTCGGAT 61.698 63.158 0.00 0.00 41.81 4.18
2021 2094 1.292223 CTACCGGTGACCTGTGGTG 59.708 63.158 19.93 0.00 35.25 4.17
2024 2097 2.355837 CGGTGACCTGTGGTGACG 60.356 66.667 0.00 0.00 40.65 4.35
2025 2098 2.852180 CGGTGACCTGTGGTGACGA 61.852 63.158 0.00 0.00 40.65 4.20
2092 2165 2.772287 CGCTCCAATAATCCCTTCTCC 58.228 52.381 0.00 0.00 0.00 3.71
2093 2166 2.370189 CGCTCCAATAATCCCTTCTCCT 59.630 50.000 0.00 0.00 0.00 3.69
2327 2412 0.394565 ATGCATCCCTAACGAGGCTC 59.605 55.000 3.87 3.87 42.21 4.70
2335 2456 3.773119 TCCCTAACGAGGCTCTGTAATTT 59.227 43.478 13.50 0.52 42.21 1.82
2339 2460 6.202954 CCCTAACGAGGCTCTGTAATTTATTG 59.797 42.308 13.50 0.00 42.21 1.90
2373 2494 7.821595 GAGAGATCTCTAATCTTCATGCATG 57.178 40.000 25.18 21.07 40.61 4.06
2427 2548 5.808042 ATTCGTCAAGTGGATCAAGATTG 57.192 39.130 0.00 0.00 0.00 2.67
2517 2638 1.722011 CCGACCGCAGTTTTGTATCT 58.278 50.000 0.00 0.00 0.00 1.98
2532 2657 5.643379 TTGTATCTGAAACCATTTGCTCC 57.357 39.130 0.00 0.00 0.00 4.70
2536 2661 3.091545 TCTGAAACCATTTGCTCCATCC 58.908 45.455 0.00 0.00 0.00 3.51
2544 2669 2.877089 TTTGCTCCATCCCATGCCCC 62.877 60.000 0.00 0.00 0.00 5.80
2546 2671 2.842058 CTCCATCCCATGCCCCTC 59.158 66.667 0.00 0.00 0.00 4.30
2547 2672 2.778278 TCCATCCCATGCCCCTCC 60.778 66.667 0.00 0.00 0.00 4.30
2553 2678 3.496160 CCATGCCCCTCCCTCCAG 61.496 72.222 0.00 0.00 0.00 3.86
2555 2680 1.773391 CATGCCCCTCCCTCCAGAT 60.773 63.158 0.00 0.00 0.00 2.90
2608 2733 4.023536 GCGAGTCACCTTCCTCTAATCTAG 60.024 50.000 0.00 0.00 0.00 2.43
2663 2795 2.514592 CGTACGGACCGGCCTCTA 60.515 66.667 20.00 0.00 0.00 2.43
2665 2797 1.452833 GTACGGACCGGCCTCTACT 60.453 63.158 20.00 0.00 0.00 2.57
2666 2798 1.153086 TACGGACCGGCCTCTACTC 60.153 63.158 20.00 0.00 0.00 2.59
2667 2799 2.615227 TACGGACCGGCCTCTACTCC 62.615 65.000 20.00 0.00 0.00 3.85
2668 2800 3.217743 GGACCGGCCTCTACTCCG 61.218 72.222 0.00 0.00 44.89 4.63
2674 2806 3.231298 GCCTCTACTCCGGCCAAT 58.769 61.111 2.24 0.00 40.43 3.16
2690 2822 2.549349 GCCAATCCAATCCAATGATGCC 60.549 50.000 0.00 0.00 0.00 4.40
2705 2837 3.018856 TGATGCCATCAACTGAACATCC 58.981 45.455 4.55 3.11 37.40 3.51
2720 2852 3.715628 ACATCCTTGTGTTTGTCTTGC 57.284 42.857 0.00 0.00 33.85 4.01
2738 2870 1.875813 CTGATGGCGAGCGTCACTC 60.876 63.158 0.00 0.07 42.47 3.51
2749 2881 1.347707 AGCGTCACTCAGAATTCCCAA 59.652 47.619 0.65 0.00 0.00 4.12
2776 2908 6.560253 AAAAGAGACACACGCAGAATTAAT 57.440 33.333 0.00 0.00 0.00 1.40
2778 2910 3.859961 AGAGACACACGCAGAATTAATCG 59.140 43.478 0.00 0.00 0.00 3.34
2783 2915 2.348666 ACACGCAGAATTAATCGAGCAC 59.651 45.455 1.72 0.00 34.78 4.40
2784 2916 2.604914 CACGCAGAATTAATCGAGCACT 59.395 45.455 1.72 0.00 34.78 4.40
2785 2917 2.604914 ACGCAGAATTAATCGAGCACTG 59.395 45.455 1.72 0.00 34.78 3.66
2836 2969 2.807967 GCACTAGCGATGGCAATATCAA 59.192 45.455 1.50 0.00 43.41 2.57
2841 2974 3.216800 AGCGATGGCAATATCAACACAT 58.783 40.909 1.50 0.00 43.41 3.21
2844 2977 4.214119 GCGATGGCAATATCAACACATAGT 59.786 41.667 0.00 0.00 39.62 2.12
2884 3021 3.597324 CGTATGATTAGCAACGCACAAG 58.403 45.455 0.00 0.00 0.00 3.16
2893 3030 1.101049 CAACGCACAAGGGAAGTGGT 61.101 55.000 0.00 0.00 37.46 4.16
2939 3077 1.462670 GCTAGCATCCATCGCTTTAGC 59.537 52.381 10.63 0.00 40.96 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.032952 CCACCGTCTCAACTTTCCGA 59.967 55.000 0.00 0.00 0.00 4.55
4 5 1.597027 CCGCCACCGTCTCAACTTT 60.597 57.895 0.00 0.00 0.00 2.66
5 6 2.030562 CCGCCACCGTCTCAACTT 59.969 61.111 0.00 0.00 0.00 2.66
6 7 4.681978 GCCGCCACCGTCTCAACT 62.682 66.667 0.00 0.00 0.00 3.16
7 8 4.681978 AGCCGCCACCGTCTCAAC 62.682 66.667 0.00 0.00 0.00 3.18
8 9 4.373116 GAGCCGCCACCGTCTCAA 62.373 66.667 0.00 0.00 39.14 3.02
10 11 4.500116 GAGAGCCGCCACCGTCTC 62.500 72.222 0.00 0.00 39.58 3.36
12 13 4.803426 CAGAGAGCCGCCACCGTC 62.803 72.222 0.00 0.00 0.00 4.79
14 15 3.997064 CTTCAGAGAGCCGCCACCG 62.997 68.421 0.00 0.00 0.00 4.94
15 16 1.965754 ATCTTCAGAGAGCCGCCACC 61.966 60.000 0.00 0.00 34.85 4.61
16 17 0.809241 CATCTTCAGAGAGCCGCCAC 60.809 60.000 0.00 0.00 34.85 5.01
17 18 1.519246 CATCTTCAGAGAGCCGCCA 59.481 57.895 0.00 0.00 34.85 5.69
18 19 1.227497 CCATCTTCAGAGAGCCGCC 60.227 63.158 0.00 0.00 34.85 6.13
19 20 0.176680 TTCCATCTTCAGAGAGCCGC 59.823 55.000 0.00 0.00 34.85 6.53
20 21 2.906691 ATTCCATCTTCAGAGAGCCG 57.093 50.000 0.00 0.00 34.85 5.52
21 22 5.062528 CCTTTATTCCATCTTCAGAGAGCC 58.937 45.833 0.00 0.00 34.85 4.70
22 23 5.679601 ACCTTTATTCCATCTTCAGAGAGC 58.320 41.667 0.00 0.00 34.85 4.09
23 24 7.123355 AGACCTTTATTCCATCTTCAGAGAG 57.877 40.000 0.00 0.00 34.85 3.20
24 25 6.098982 GGAGACCTTTATTCCATCTTCAGAGA 59.901 42.308 0.00 0.00 36.09 3.10
25 26 6.287525 GGAGACCTTTATTCCATCTTCAGAG 58.712 44.000 0.00 0.00 0.00 3.35
26 27 6.240549 GGAGACCTTTATTCCATCTTCAGA 57.759 41.667 0.00 0.00 0.00 3.27
44 45 2.122769 GGGGCTAGGAGGGGAGAC 60.123 72.222 0.00 0.00 0.00 3.36
45 46 3.449126 GGGGGCTAGGAGGGGAGA 61.449 72.222 0.00 0.00 0.00 3.71
46 47 4.944069 CGGGGGCTAGGAGGGGAG 62.944 77.778 0.00 0.00 0.00 4.30
48 49 4.817909 AACGGGGGCTAGGAGGGG 62.818 72.222 0.00 0.00 0.00 4.79
49 50 3.162154 GAACGGGGGCTAGGAGGG 61.162 72.222 0.00 0.00 0.00 4.30
50 51 3.162154 GGAACGGGGGCTAGGAGG 61.162 72.222 0.00 0.00 0.00 4.30
63 64 4.424566 TAGACGCACCGCCGGAAC 62.425 66.667 11.71 0.00 0.00 3.62
64 65 4.124351 CTAGACGCACCGCCGGAA 62.124 66.667 11.71 0.00 0.00 4.30
74 75 1.421410 CCACCAACGATGCTAGACGC 61.421 60.000 0.00 0.00 39.77 5.19
75 76 0.806102 CCCACCAACGATGCTAGACG 60.806 60.000 0.00 0.00 0.00 4.18
76 77 1.090052 GCCCACCAACGATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
77 78 1.220749 GCCCACCAACGATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
78 79 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
79 80 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
80 81 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
81 82 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
82 83 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
83 84 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
84 85 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
85 86 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
86 87 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
87 88 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
90 91 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
91 92 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
92 93 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
93 94 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
94 95 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
95 96 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
101 102 0.753262 ATATGCCGGAGACACACCTC 59.247 55.000 5.05 0.00 0.00 3.85
102 103 1.204146 AATATGCCGGAGACACACCT 58.796 50.000 5.05 0.00 0.00 4.00
103 104 2.038387 AAATATGCCGGAGACACACC 57.962 50.000 5.05 0.00 0.00 4.16
104 105 4.632153 AGATAAATATGCCGGAGACACAC 58.368 43.478 5.05 0.00 0.00 3.82
105 106 4.955811 AGATAAATATGCCGGAGACACA 57.044 40.909 5.05 0.00 0.00 3.72
106 107 5.049405 CCAAAGATAAATATGCCGGAGACAC 60.049 44.000 5.05 0.00 0.00 3.67
107 108 5.063204 CCAAAGATAAATATGCCGGAGACA 58.937 41.667 5.05 0.00 0.00 3.41
108 109 5.049405 CACCAAAGATAAATATGCCGGAGAC 60.049 44.000 5.05 0.00 0.00 3.36
109 110 5.063204 CACCAAAGATAAATATGCCGGAGA 58.937 41.667 5.05 0.00 0.00 3.71
110 111 4.216257 CCACCAAAGATAAATATGCCGGAG 59.784 45.833 5.05 0.00 0.00 4.63
111 112 4.141287 CCACCAAAGATAAATATGCCGGA 58.859 43.478 5.05 0.00 0.00 5.14
112 113 4.141287 TCCACCAAAGATAAATATGCCGG 58.859 43.478 0.00 0.00 0.00 6.13
113 114 5.964958 ATCCACCAAAGATAAATATGCCG 57.035 39.130 0.00 0.00 0.00 5.69
114 115 6.424812 GCAAATCCACCAAAGATAAATATGCC 59.575 38.462 0.00 0.00 0.00 4.40
115 116 7.212274 AGCAAATCCACCAAAGATAAATATGC 58.788 34.615 0.00 0.00 0.00 3.14
116 117 7.592533 CGAGCAAATCCACCAAAGATAAATATG 59.407 37.037 0.00 0.00 0.00 1.78
117 118 7.255590 CCGAGCAAATCCACCAAAGATAAATAT 60.256 37.037 0.00 0.00 0.00 1.28
118 119 6.039270 CCGAGCAAATCCACCAAAGATAAATA 59.961 38.462 0.00 0.00 0.00 1.40
119 120 5.163519 CCGAGCAAATCCACCAAAGATAAAT 60.164 40.000 0.00 0.00 0.00 1.40
120 121 4.157656 CCGAGCAAATCCACCAAAGATAAA 59.842 41.667 0.00 0.00 0.00 1.40
121 122 3.694072 CCGAGCAAATCCACCAAAGATAA 59.306 43.478 0.00 0.00 0.00 1.75
122 123 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
123 124 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
124 125 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
125 126 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
126 127 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
127 128 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
128 129 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
129 130 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
130 131 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
131 132 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
132 133 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
133 134 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
134 135 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
135 136 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
136 137 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
137 138 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
138 139 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
139 140 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
140 141 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
141 142 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
142 143 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
143 144 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
144 145 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
145 146 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
146 147 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
147 148 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
148 149 1.388888 AACGTAGACGAACAACGACG 58.611 50.000 9.41 0.00 45.77 5.12
149 150 2.531508 ACAAACGTAGACGAACAACGAC 59.468 45.455 9.41 0.00 45.77 4.34
150 151 2.531103 CACAAACGTAGACGAACAACGA 59.469 45.455 9.41 0.00 45.77 3.85
152 153 3.061161 ACACACAAACGTAGACGAACAAC 59.939 43.478 9.41 0.00 43.02 3.32
153 154 3.252400 ACACACAAACGTAGACGAACAA 58.748 40.909 9.41 0.00 43.02 2.83
154 155 2.853594 GACACACAAACGTAGACGAACA 59.146 45.455 9.41 0.00 43.02 3.18
155 156 3.111098 AGACACACAAACGTAGACGAAC 58.889 45.455 9.41 0.00 43.02 3.95
156 157 3.425577 AGACACACAAACGTAGACGAA 57.574 42.857 9.41 0.00 43.02 3.85
157 158 3.425577 AAGACACACAAACGTAGACGA 57.574 42.857 9.41 0.00 43.02 4.20
158 159 3.302221 CCAAAGACACACAAACGTAGACG 60.302 47.826 0.00 0.00 46.33 4.18
159 160 3.619929 ACCAAAGACACACAAACGTAGAC 59.380 43.478 0.00 0.00 0.00 2.59
160 161 3.864243 ACCAAAGACACACAAACGTAGA 58.136 40.909 0.00 0.00 0.00 2.59
161 162 4.609691 AACCAAAGACACACAAACGTAG 57.390 40.909 0.00 0.00 0.00 3.51
162 163 4.379603 CCAAACCAAAGACACACAAACGTA 60.380 41.667 0.00 0.00 0.00 3.57
163 164 3.570559 CAAACCAAAGACACACAAACGT 58.429 40.909 0.00 0.00 0.00 3.99
164 165 2.920490 CCAAACCAAAGACACACAAACG 59.080 45.455 0.00 0.00 0.00 3.60
165 166 4.181309 TCCAAACCAAAGACACACAAAC 57.819 40.909 0.00 0.00 0.00 2.93
166 167 4.142049 GGATCCAAACCAAAGACACACAAA 60.142 41.667 6.95 0.00 0.00 2.83
167 168 3.383185 GGATCCAAACCAAAGACACACAA 59.617 43.478 6.95 0.00 0.00 3.33
168 169 2.955660 GGATCCAAACCAAAGACACACA 59.044 45.455 6.95 0.00 0.00 3.72
169 170 3.222603 AGGATCCAAACCAAAGACACAC 58.777 45.455 15.82 0.00 0.00 3.82
170 171 3.593442 AGGATCCAAACCAAAGACACA 57.407 42.857 15.82 0.00 0.00 3.72
171 172 3.255888 GGAAGGATCCAAACCAAAGACAC 59.744 47.826 15.82 0.00 45.79 3.67
172 173 3.496331 GGAAGGATCCAAACCAAAGACA 58.504 45.455 15.82 0.00 45.79 3.41
173 174 2.488153 CGGAAGGATCCAAACCAAAGAC 59.512 50.000 15.82 0.00 46.97 3.01
174 175 2.373836 TCGGAAGGATCCAAACCAAAGA 59.626 45.455 15.82 4.50 46.97 2.52
175 176 2.790433 TCGGAAGGATCCAAACCAAAG 58.210 47.619 15.82 2.27 46.97 2.77
176 177 2.961531 TCGGAAGGATCCAAACCAAA 57.038 45.000 15.82 2.64 46.97 3.28
177 178 2.999331 GATCGGAAGGATCCAAACCAA 58.001 47.619 15.82 0.00 46.97 3.67
178 179 2.710096 GATCGGAAGGATCCAAACCA 57.290 50.000 15.82 5.68 46.97 3.67
186 187 7.270047 TGAAAAATAACGTAGATCGGAAGGAT 58.730 34.615 0.00 0.00 44.69 3.24
187 188 6.632909 TGAAAAATAACGTAGATCGGAAGGA 58.367 36.000 0.00 0.00 44.69 3.36
188 189 6.897259 TGAAAAATAACGTAGATCGGAAGG 57.103 37.500 0.00 0.00 44.69 3.46
189 190 7.274367 CGATGAAAAATAACGTAGATCGGAAG 58.726 38.462 0.00 0.00 44.69 3.46
190 191 7.157050 CGATGAAAAATAACGTAGATCGGAA 57.843 36.000 0.00 0.00 44.69 4.30
191 192 6.742999 CGATGAAAAATAACGTAGATCGGA 57.257 37.500 0.00 0.00 44.69 4.55
192 193 5.901509 CCGATGAAAAATAACGTAGATCGG 58.098 41.667 0.00 0.00 43.53 4.18
193 194 5.363517 GCCGATGAAAAATAACGTAGATCG 58.636 41.667 0.00 0.00 46.00 3.69
194 195 5.363517 CGCCGATGAAAAATAACGTAGATC 58.636 41.667 0.00 0.00 0.00 2.75
195 196 4.210537 CCGCCGATGAAAAATAACGTAGAT 59.789 41.667 0.00 0.00 0.00 1.98
196 197 3.552699 CCGCCGATGAAAAATAACGTAGA 59.447 43.478 0.00 0.00 0.00 2.59
197 198 3.843510 GCCGCCGATGAAAAATAACGTAG 60.844 47.826 0.00 0.00 0.00 3.51
198 199 2.030701 GCCGCCGATGAAAAATAACGTA 59.969 45.455 0.00 0.00 0.00 3.57
199 200 1.202098 GCCGCCGATGAAAAATAACGT 60.202 47.619 0.00 0.00 0.00 3.99
200 201 1.462791 GCCGCCGATGAAAAATAACG 58.537 50.000 0.00 0.00 0.00 3.18
201 202 1.462791 CGCCGCCGATGAAAAATAAC 58.537 50.000 0.00 0.00 36.29 1.89
202 203 0.378962 CCGCCGCCGATGAAAAATAA 59.621 50.000 0.00 0.00 36.29 1.40
203 204 0.745128 ACCGCCGCCGATGAAAAATA 60.745 50.000 0.00 0.00 36.29 1.40
204 205 1.591504 AACCGCCGCCGATGAAAAAT 61.592 50.000 0.00 0.00 36.29 1.82
205 206 2.262303 AACCGCCGCCGATGAAAAA 61.262 52.632 0.00 0.00 36.29 1.94
206 207 2.670251 AACCGCCGCCGATGAAAA 60.670 55.556 0.00 0.00 36.29 2.29
207 208 3.427425 CAACCGCCGCCGATGAAA 61.427 61.111 0.00 0.00 36.29 2.69
215 216 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
216 217 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
217 218 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
218 219 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
219 220 2.113139 ACCCCAGAACAGCAACCG 59.887 61.111 0.00 0.00 0.00 4.44
220 221 2.564721 GCACCCCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
221 222 1.529244 AGCACCCCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
222 223 1.529010 CAGCACCCCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
223 224 2.113774 CAGCACCCCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
224 225 2.674380 CCAGCACCCCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
225 226 1.302832 GACCAGCACCCCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
226 227 2.829384 GGACCAGCACCCCAGAACA 61.829 63.158 0.00 0.00 0.00 3.18
227 228 1.198759 TAGGACCAGCACCCCAGAAC 61.199 60.000 0.00 0.00 0.00 3.01
228 229 0.253160 ATAGGACCAGCACCCCAGAA 60.253 55.000 0.00 0.00 0.00 3.02
229 230 0.982852 CATAGGACCAGCACCCCAGA 60.983 60.000 0.00 0.00 0.00 3.86
230 231 1.528824 CATAGGACCAGCACCCCAG 59.471 63.158 0.00 0.00 0.00 4.45
231 232 2.000701 CCATAGGACCAGCACCCCA 61.001 63.158 0.00 0.00 0.00 4.96
232 233 2.757124 CCCATAGGACCAGCACCCC 61.757 68.421 0.00 0.00 33.47 4.95
233 234 2.757124 CCCCATAGGACCAGCACCC 61.757 68.421 0.00 0.00 38.24 4.61
234 235 1.984288 GACCCCATAGGACCAGCACC 61.984 65.000 0.00 0.00 39.89 5.01
235 236 0.983378 AGACCCCATAGGACCAGCAC 60.983 60.000 0.00 0.00 39.89 4.40
236 237 0.253160 AAGACCCCATAGGACCAGCA 60.253 55.000 0.00 0.00 39.89 4.41
237 238 1.694696 CTAAGACCCCATAGGACCAGC 59.305 57.143 0.00 0.00 39.89 4.85
238 239 1.694696 GCTAAGACCCCATAGGACCAG 59.305 57.143 0.00 0.00 39.89 4.00
239 240 1.009060 TGCTAAGACCCCATAGGACCA 59.991 52.381 0.00 0.00 39.89 4.02
240 241 1.416772 GTGCTAAGACCCCATAGGACC 59.583 57.143 0.00 0.00 39.89 4.46
241 242 1.068741 CGTGCTAAGACCCCATAGGAC 59.931 57.143 0.00 0.00 39.89 3.85
242 243 1.410004 CGTGCTAAGACCCCATAGGA 58.590 55.000 0.00 0.00 39.89 2.94
243 244 0.393077 CCGTGCTAAGACCCCATAGG 59.607 60.000 0.00 0.00 43.78 2.57
244 245 0.249911 GCCGTGCTAAGACCCCATAG 60.250 60.000 0.00 0.00 0.00 2.23
245 246 1.827394 GCCGTGCTAAGACCCCATA 59.173 57.895 0.00 0.00 0.00 2.74
246 247 2.590092 GCCGTGCTAAGACCCCAT 59.410 61.111 0.00 0.00 0.00 4.00
247 248 4.077184 CGCCGTGCTAAGACCCCA 62.077 66.667 0.00 0.00 0.00 4.96
248 249 3.766691 TCGCCGTGCTAAGACCCC 61.767 66.667 0.00 0.00 0.00 4.95
249 250 2.502692 AAGTCGCCGTGCTAAGACCC 62.503 60.000 0.00 0.00 34.41 4.46
250 251 1.077089 GAAGTCGCCGTGCTAAGACC 61.077 60.000 0.00 0.00 34.41 3.85
251 252 1.077089 GGAAGTCGCCGTGCTAAGAC 61.077 60.000 0.00 0.00 0.00 3.01
252 253 1.214589 GGAAGTCGCCGTGCTAAGA 59.785 57.895 0.00 0.00 0.00 2.10
253 254 1.810030 GGGAAGTCGCCGTGCTAAG 60.810 63.158 0.00 0.00 0.00 2.18
254 255 2.263540 GGGAAGTCGCCGTGCTAA 59.736 61.111 0.00 0.00 0.00 3.09
255 256 4.124351 CGGGAAGTCGCCGTGCTA 62.124 66.667 0.00 0.00 0.00 3.49
258 259 4.052229 AGTCGGGAAGTCGCCGTG 62.052 66.667 0.00 0.00 33.44 4.94
259 260 4.052229 CAGTCGGGAAGTCGCCGT 62.052 66.667 0.00 0.00 33.44 5.68
260 261 2.001361 ATACAGTCGGGAAGTCGCCG 62.001 60.000 0.00 0.00 0.00 6.46
261 262 1.027357 TATACAGTCGGGAAGTCGCC 58.973 55.000 0.00 0.00 0.00 5.54
262 263 1.674962 AGTATACAGTCGGGAAGTCGC 59.325 52.381 5.50 0.00 0.00 5.19
263 264 4.465040 GTAGTATACAGTCGGGAAGTCG 57.535 50.000 5.50 0.00 42.43 4.18
270 271 9.242580 GCACAATGTGTTGTAGTATACAGTCGG 62.243 44.444 15.36 0.00 46.49 4.79
271 272 6.453791 GCACAATGTGTTGTAGTATACAGTCG 60.454 42.308 15.36 0.00 46.49 4.18
272 273 6.183360 GGCACAATGTGTTGTAGTATACAGTC 60.183 42.308 15.36 0.00 46.49 3.51
273 274 5.642063 GGCACAATGTGTTGTAGTATACAGT 59.358 40.000 15.36 0.00 46.49 3.55
274 275 5.064707 GGGCACAATGTGTTGTAGTATACAG 59.935 44.000 15.36 0.00 46.49 2.74
275 276 4.938832 GGGCACAATGTGTTGTAGTATACA 59.061 41.667 15.36 0.00 46.49 2.29
276 277 4.033587 CGGGCACAATGTGTTGTAGTATAC 59.966 45.833 15.36 0.00 46.49 1.47
277 278 4.185394 CGGGCACAATGTGTTGTAGTATA 58.815 43.478 15.36 0.00 46.49 1.47
278 279 3.006940 CGGGCACAATGTGTTGTAGTAT 58.993 45.455 15.36 0.00 46.49 2.12
279 280 2.418692 CGGGCACAATGTGTTGTAGTA 58.581 47.619 15.36 0.00 46.49 1.82
280 281 1.234821 CGGGCACAATGTGTTGTAGT 58.765 50.000 15.36 0.00 46.49 2.73
281 282 0.521291 CCGGGCACAATGTGTTGTAG 59.479 55.000 15.36 2.87 46.49 2.74
282 283 1.519751 GCCGGGCACAATGTGTTGTA 61.520 55.000 15.62 0.00 46.49 2.41
284 285 2.049248 GCCGGGCACAATGTGTTG 60.049 61.111 15.62 5.10 41.20 3.33
285 286 2.203480 AGCCGGGCACAATGTGTT 60.203 55.556 23.09 0.00 35.75 3.32
286 287 2.672996 GAGCCGGGCACAATGTGT 60.673 61.111 23.09 0.00 35.75 3.72
287 288 3.443045 GGAGCCGGGCACAATGTG 61.443 66.667 23.09 9.36 36.51 3.21
305 306 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
306 307 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
307 308 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
308 309 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
309 310 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
335 336 3.181967 CACCGAAGCGAGCCGAAG 61.182 66.667 0.00 0.00 0.00 3.79
339 340 3.793144 CAAGCACCGAAGCGAGCC 61.793 66.667 0.00 0.00 40.15 4.70
340 341 1.687494 CTACAAGCACCGAAGCGAGC 61.687 60.000 0.00 0.00 40.15 5.03
341 342 0.388649 ACTACAAGCACCGAAGCGAG 60.389 55.000 0.00 0.00 40.15 5.03
342 343 0.388134 GACTACAAGCACCGAAGCGA 60.388 55.000 0.00 0.00 40.15 4.93
343 344 1.674611 CGACTACAAGCACCGAAGCG 61.675 60.000 0.00 0.00 40.15 4.68
344 345 0.666577 ACGACTACAAGCACCGAAGC 60.667 55.000 0.00 0.00 0.00 3.86
345 346 1.337821 GACGACTACAAGCACCGAAG 58.662 55.000 0.00 0.00 0.00 3.79
346 347 0.386352 CGACGACTACAAGCACCGAA 60.386 55.000 0.00 0.00 0.00 4.30
347 348 1.208358 CGACGACTACAAGCACCGA 59.792 57.895 0.00 0.00 0.00 4.69
348 349 2.434134 GCGACGACTACAAGCACCG 61.434 63.158 0.00 0.00 0.00 4.94
349 350 0.169672 TAGCGACGACTACAAGCACC 59.830 55.000 0.00 0.00 0.00 5.01
350 351 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
351 352 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
352 353 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
353 354 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
354 355 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
355 356 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
356 357 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
357 358 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
358 359 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
359 360 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
360 361 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
361 362 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
362 363 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
363 364 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
364 365 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
365 366 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
366 367 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
367 368 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
368 369 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
369 370 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
370 371 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
371 372 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
372 373 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
373 374 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
394 395 9.790389 ACAGTACAACGAACATCAAAAATAAAA 57.210 25.926 0.00 0.00 0.00 1.52
395 396 9.440784 GACAGTACAACGAACATCAAAAATAAA 57.559 29.630 0.00 0.00 0.00 1.40
396 397 8.613482 TGACAGTACAACGAACATCAAAAATAA 58.387 29.630 0.00 0.00 0.00 1.40
397 398 8.144155 TGACAGTACAACGAACATCAAAAATA 57.856 30.769 0.00 0.00 0.00 1.40
398 399 7.022055 TGACAGTACAACGAACATCAAAAAT 57.978 32.000 0.00 0.00 0.00 1.82
399 400 6.424176 TGACAGTACAACGAACATCAAAAA 57.576 33.333 0.00 0.00 0.00 1.94
400 401 6.258947 TCATGACAGTACAACGAACATCAAAA 59.741 34.615 0.00 0.00 0.00 2.44
401 402 5.755861 TCATGACAGTACAACGAACATCAAA 59.244 36.000 0.00 0.00 0.00 2.69
402 403 5.293560 TCATGACAGTACAACGAACATCAA 58.706 37.500 0.00 0.00 0.00 2.57
403 404 4.877282 TCATGACAGTACAACGAACATCA 58.123 39.130 0.00 0.00 0.00 3.07
404 405 6.090763 TCAATCATGACAGTACAACGAACATC 59.909 38.462 0.00 0.00 0.00 3.06
405 406 5.931724 TCAATCATGACAGTACAACGAACAT 59.068 36.000 0.00 0.00 0.00 2.71
406 407 5.293560 TCAATCATGACAGTACAACGAACA 58.706 37.500 0.00 0.00 0.00 3.18
407 408 5.839262 TCAATCATGACAGTACAACGAAC 57.161 39.130 0.00 0.00 0.00 3.95
408 409 6.852858 TTTCAATCATGACAGTACAACGAA 57.147 33.333 0.00 0.00 34.61 3.85
409 410 6.852858 TTTTCAATCATGACAGTACAACGA 57.147 33.333 0.00 0.00 34.61 3.85
410 411 7.297391 TCATTTTCAATCATGACAGTACAACG 58.703 34.615 0.00 0.00 34.61 4.10
411 412 9.630098 ATTCATTTTCAATCATGACAGTACAAC 57.370 29.630 0.00 0.00 34.61 3.32
458 459 5.393027 GCATCTACACCGGTCATGAATTTTT 60.393 40.000 2.59 0.00 0.00 1.94
459 460 4.096382 GCATCTACACCGGTCATGAATTTT 59.904 41.667 2.59 0.00 0.00 1.82
460 461 3.627577 GCATCTACACCGGTCATGAATTT 59.372 43.478 2.59 0.00 0.00 1.82
461 462 3.118261 AGCATCTACACCGGTCATGAATT 60.118 43.478 2.59 0.00 0.00 2.17
462 463 2.435805 AGCATCTACACCGGTCATGAAT 59.564 45.455 2.59 0.00 0.00 2.57
463 464 1.831106 AGCATCTACACCGGTCATGAA 59.169 47.619 2.59 0.00 0.00 2.57
464 465 1.409064 GAGCATCTACACCGGTCATGA 59.591 52.381 2.59 2.81 0.00 3.07
465 466 1.858091 GAGCATCTACACCGGTCATG 58.142 55.000 2.59 6.04 0.00 3.07
492 493 2.905415 TGGTACTCCCTCCGTAGAAA 57.095 50.000 0.00 0.00 0.00 2.52
495 496 2.068834 ACATGGTACTCCCTCCGTAG 57.931 55.000 0.00 0.00 0.00 3.51
497 498 1.772836 GTACATGGTACTCCCTCCGT 58.227 55.000 0.00 0.00 0.00 4.69
498 499 0.666913 CGTACATGGTACTCCCTCCG 59.333 60.000 0.00 0.00 0.00 4.63
499 500 1.680207 GTCGTACATGGTACTCCCTCC 59.320 57.143 0.00 0.00 0.00 4.30
500 501 2.098770 GTGTCGTACATGGTACTCCCTC 59.901 54.545 0.00 0.00 0.00 4.30
501 502 2.097825 GTGTCGTACATGGTACTCCCT 58.902 52.381 0.00 0.00 0.00 4.20
502 503 1.202222 CGTGTCGTACATGGTACTCCC 60.202 57.143 0.00 0.00 31.65 4.30
505 506 2.161012 CAGTCGTGTCGTACATGGTACT 59.839 50.000 0.00 3.08 35.86 2.73
506 507 2.160219 TCAGTCGTGTCGTACATGGTAC 59.840 50.000 0.00 0.00 35.86 3.34
507 508 2.417586 CTCAGTCGTGTCGTACATGGTA 59.582 50.000 0.00 0.00 35.86 3.25
508 509 1.199327 CTCAGTCGTGTCGTACATGGT 59.801 52.381 0.00 0.00 35.86 3.55
509 510 1.896345 CTCAGTCGTGTCGTACATGG 58.104 55.000 0.00 0.00 35.86 3.66
510 511 1.260206 GCTCAGTCGTGTCGTACATG 58.740 55.000 0.00 0.00 36.48 3.21
511 512 0.879090 TGCTCAGTCGTGTCGTACAT 59.121 50.000 0.00 0.00 0.00 2.29
512 513 0.237498 CTGCTCAGTCGTGTCGTACA 59.763 55.000 0.00 0.00 0.00 2.90
522 523 3.923461 GTGTATGACTTCACTGCTCAGTC 59.077 47.826 0.00 0.00 40.20 3.51
539 540 2.038863 TTGACCCCTGTCCAGTGTAT 57.961 50.000 0.00 0.00 41.01 2.29
540 541 1.809133 TTTGACCCCTGTCCAGTGTA 58.191 50.000 0.00 0.00 41.01 2.90
541 542 0.923358 TTTTGACCCCTGTCCAGTGT 59.077 50.000 0.00 0.00 41.01 3.55
542 543 2.162681 GATTTTGACCCCTGTCCAGTG 58.837 52.381 0.00 0.00 41.01 3.66
543 544 1.780309 TGATTTTGACCCCTGTCCAGT 59.220 47.619 0.00 0.00 41.01 4.00
545 546 3.164268 CATTGATTTTGACCCCTGTCCA 58.836 45.455 0.00 0.00 41.01 4.02
565 567 1.304254 TTTACTCGTGCTGCTTTGCA 58.696 45.000 0.00 0.00 41.05 4.08
637 639 2.887783 TCTTTTGGAATTACAGCGCCAA 59.112 40.909 2.29 0.00 38.54 4.52
662 664 3.502211 CCAAAAGTTGAGGCGTGATTAGT 59.498 43.478 0.00 0.00 0.00 2.24
860 893 1.408702 GGAGTGAGAGAGATCAGTGGC 59.591 57.143 0.00 0.00 32.95 5.01
861 894 2.951642 GAGGAGTGAGAGAGATCAGTGG 59.048 54.545 0.00 0.00 32.95 4.00
862 895 3.879295 GAGAGGAGTGAGAGAGATCAGTG 59.121 52.174 0.00 0.00 32.95 3.66
863 896 3.117888 GGAGAGGAGTGAGAGAGATCAGT 60.118 52.174 0.00 0.00 35.53 3.41
864 897 3.137176 AGGAGAGGAGTGAGAGAGATCAG 59.863 52.174 0.00 0.00 0.00 2.90
865 898 3.122480 AGGAGAGGAGTGAGAGAGATCA 58.878 50.000 0.00 0.00 0.00 2.92
866 899 3.392616 AGAGGAGAGGAGTGAGAGAGATC 59.607 52.174 0.00 0.00 0.00 2.75
867 900 3.392616 GAGAGGAGAGGAGTGAGAGAGAT 59.607 52.174 0.00 0.00 0.00 2.75
868 901 2.771943 GAGAGGAGAGGAGTGAGAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
869 902 2.158755 GGAGAGGAGAGGAGTGAGAGAG 60.159 59.091 0.00 0.00 0.00 3.20
870 903 1.843851 GGAGAGGAGAGGAGTGAGAGA 59.156 57.143 0.00 0.00 0.00 3.10
871 904 1.846439 AGGAGAGGAGAGGAGTGAGAG 59.154 57.143 0.00 0.00 0.00 3.20
872 905 1.843851 GAGGAGAGGAGAGGAGTGAGA 59.156 57.143 0.00 0.00 0.00 3.27
873 906 1.846439 AGAGGAGAGGAGAGGAGTGAG 59.154 57.143 0.00 0.00 0.00 3.51
874 907 1.979809 AGAGGAGAGGAGAGGAGTGA 58.020 55.000 0.00 0.00 0.00 3.41
875 908 5.779241 ATATAGAGGAGAGGAGAGGAGTG 57.221 47.826 0.00 0.00 0.00 3.51
876 909 6.069615 GCTTATATAGAGGAGAGGAGAGGAGT 60.070 46.154 0.00 0.00 0.00 3.85
877 910 6.357367 GCTTATATAGAGGAGAGGAGAGGAG 58.643 48.000 0.00 0.00 0.00 3.69
878 911 5.192923 GGCTTATATAGAGGAGAGGAGAGGA 59.807 48.000 0.00 0.00 0.00 3.71
879 912 5.445964 GGCTTATATAGAGGAGAGGAGAGG 58.554 50.000 0.00 0.00 0.00 3.69
880 913 5.445964 GGGCTTATATAGAGGAGAGGAGAG 58.554 50.000 0.00 0.00 0.00 3.20
881 914 4.080243 CGGGCTTATATAGAGGAGAGGAGA 60.080 50.000 0.00 0.00 0.00 3.71
938 984 6.313164 CGATATGGGTGATCAAATGATGAGAG 59.687 42.308 0.00 0.00 42.53 3.20
962 1008 0.603569 ATTAGCAGCTATCCGGGTCG 59.396 55.000 2.02 0.00 0.00 4.79
965 1013 1.620819 AGTGATTAGCAGCTATCCGGG 59.379 52.381 2.02 0.00 0.00 5.73
980 1032 4.321718 CATCTCCACAACAGACAAGTGAT 58.678 43.478 0.00 0.00 35.33 3.06
981 1033 3.494924 CCATCTCCACAACAGACAAGTGA 60.495 47.826 0.00 0.00 35.33 3.41
982 1034 2.810274 CCATCTCCACAACAGACAAGTG 59.190 50.000 0.00 0.00 0.00 3.16
983 1035 2.811873 GCCATCTCCACAACAGACAAGT 60.812 50.000 0.00 0.00 0.00 3.16
998 1052 1.520120 CGCTGATCACACGCCATCT 60.520 57.895 0.00 0.00 0.00 2.90
1044 1107 1.753368 GAAGCATCTCCTCCTCCCCG 61.753 65.000 0.00 0.00 0.00 5.73
1467 1530 1.768112 CGTCGCCGGAGTTGTTGTTT 61.768 55.000 5.05 0.00 0.00 2.83
1468 1531 2.241880 CGTCGCCGGAGTTGTTGTT 61.242 57.895 5.05 0.00 0.00 2.83
1469 1532 2.660552 CGTCGCCGGAGTTGTTGT 60.661 61.111 5.05 0.00 0.00 3.32
1563 1629 4.148825 CTGGGGCCGAGGTCGAAG 62.149 72.222 7.81 0.00 43.02 3.79
1579 1645 2.745100 CACATCAGCCACAGCGCT 60.745 61.111 2.64 2.64 46.67 5.92
1584 1650 1.002990 CAGCTCCACATCAGCCACA 60.003 57.895 0.00 0.00 37.63 4.17
1586 1652 1.297689 GACAGCTCCACATCAGCCA 59.702 57.895 0.00 0.00 37.63 4.75
1590 1659 0.325602 TGCATGACAGCTCCACATCA 59.674 50.000 0.00 0.00 34.99 3.07
1593 1662 1.302752 GGTGCATGACAGCTCCACA 60.303 57.895 0.00 0.00 45.15 4.17
1626 1695 2.332514 GTGGACACCGACGACGAA 59.667 61.111 9.28 0.00 42.66 3.85
1860 1932 1.439644 GTGGAGCGAGGTCTGATCC 59.560 63.158 2.22 0.00 0.00 3.36
1863 1935 3.749064 GCGTGGAGCGAGGTCTGA 61.749 66.667 2.22 0.00 44.77 3.27
1997 2069 1.975680 ACAGGTCACCGGTAGTTTGAT 59.024 47.619 6.87 0.00 28.50 2.57
1998 2070 1.069513 CACAGGTCACCGGTAGTTTGA 59.930 52.381 6.87 0.00 29.37 2.69
2000 2072 0.395312 CCACAGGTCACCGGTAGTTT 59.605 55.000 6.87 0.00 29.37 2.66
2021 2094 4.304939 CGATAATAACCTTCCCCTTCGTC 58.695 47.826 0.00 0.00 0.00 4.20
2024 2097 4.803253 GCTCCGATAATAACCTTCCCCTTC 60.803 50.000 0.00 0.00 0.00 3.46
2025 2098 3.072622 GCTCCGATAATAACCTTCCCCTT 59.927 47.826 0.00 0.00 0.00 3.95
2138 2220 7.120873 ACACGTAGTACACATACTGAAGAAGAT 59.879 37.037 0.38 0.00 41.61 2.40
2287 2372 6.649973 TGCATGGTTGATTCAAGTTTTATTGG 59.350 34.615 0.00 0.00 0.00 3.16
2327 2412 9.258826 CTCTCTCCACAGATCAATAAATTACAG 57.741 37.037 0.00 0.00 0.00 2.74
2416 2537 3.198635 TCACCTCCTCACAATCTTGATCC 59.801 47.826 0.00 0.00 0.00 3.36
2427 2548 0.033504 TTGCTTCGTCACCTCCTCAC 59.966 55.000 0.00 0.00 0.00 3.51
2461 2582 9.994432 GTGATCAATTCATTCTAATTTCGAACT 57.006 29.630 0.00 0.00 36.54 3.01
2462 2583 8.937932 CGTGATCAATTCATTCTAATTTCGAAC 58.062 33.333 0.00 0.00 36.54 3.95
2463 2584 8.664798 ACGTGATCAATTCATTCTAATTTCGAA 58.335 29.630 0.00 0.00 36.54 3.71
2464 2585 8.116136 CACGTGATCAATTCATTCTAATTTCGA 58.884 33.333 10.90 0.00 36.54 3.71
2465 2586 7.904977 ACACGTGATCAATTCATTCTAATTTCG 59.095 33.333 25.01 0.00 36.54 3.46
2466 2587 9.003112 CACACGTGATCAATTCATTCTAATTTC 57.997 33.333 25.01 0.00 36.54 2.17
2467 2588 7.485913 GCACACGTGATCAATTCATTCTAATTT 59.514 33.333 25.01 0.00 36.54 1.82
2468 2589 6.968904 GCACACGTGATCAATTCATTCTAATT 59.031 34.615 25.01 0.00 36.54 1.40
2469 2590 6.489675 GCACACGTGATCAATTCATTCTAAT 58.510 36.000 25.01 0.00 36.54 1.73
2497 2618 0.096454 GATACAAAACTGCGGTCGGC 59.904 55.000 0.00 0.00 43.96 5.54
2504 2625 6.346838 GCAAATGGTTTCAGATACAAAACTGC 60.347 38.462 0.00 0.00 36.01 4.40
2517 2638 2.178580 GGGATGGAGCAAATGGTTTCA 58.821 47.619 0.00 0.00 0.00 2.69
2532 2657 2.780040 AGGGAGGGGCATGGGATG 60.780 66.667 0.00 0.00 0.00 3.51
2536 2661 3.496160 CTGGAGGGAGGGGCATGG 61.496 72.222 0.00 0.00 0.00 3.66
2544 2669 9.209175 CGAATACTTTTTATAATCTGGAGGGAG 57.791 37.037 0.00 0.00 0.00 4.30
2546 2671 7.937394 ACCGAATACTTTTTATAATCTGGAGGG 59.063 37.037 0.00 0.00 0.00 4.30
2547 2672 8.774586 CACCGAATACTTTTTATAATCTGGAGG 58.225 37.037 0.00 0.00 0.00 4.30
2553 2678 7.181143 TCGGCACCGAATACTTTTTATAATC 57.819 36.000 9.81 0.00 46.01 1.75
2585 2710 2.691011 AGATTAGAGGAAGGTGACTCGC 59.309 50.000 0.00 0.00 42.68 5.03
2663 2795 1.227383 GGATTGGATTGGCCGGAGT 59.773 57.895 5.05 0.00 40.66 3.85
2665 2797 0.261402 ATTGGATTGGATTGGCCGGA 59.739 50.000 5.05 0.00 40.66 5.14
2666 2798 0.390124 CATTGGATTGGATTGGCCGG 59.610 55.000 0.00 0.00 40.66 6.13
2667 2799 1.401761 TCATTGGATTGGATTGGCCG 58.598 50.000 0.00 0.00 40.66 6.13
2668 2800 2.549349 GCATCATTGGATTGGATTGGCC 60.549 50.000 0.00 0.00 37.10 5.36
2669 2801 2.549349 GGCATCATTGGATTGGATTGGC 60.549 50.000 0.00 0.00 0.00 4.52
2670 2802 2.701423 TGGCATCATTGGATTGGATTGG 59.299 45.455 0.00 0.00 0.00 3.16
2671 2803 4.039852 TGATGGCATCATTGGATTGGATTG 59.960 41.667 25.63 0.00 33.59 2.67
2672 2804 4.228010 TGATGGCATCATTGGATTGGATT 58.772 39.130 25.63 0.00 33.59 3.01
2673 2805 3.851979 TGATGGCATCATTGGATTGGAT 58.148 40.909 25.63 0.00 33.59 3.41
2674 2806 3.315880 TGATGGCATCATTGGATTGGA 57.684 42.857 25.63 0.00 33.59 3.53
2690 2822 5.443185 AACACAAGGATGTTCAGTTGATG 57.557 39.130 0.00 0.00 38.44 3.07
2705 2837 3.635331 CCATCAGCAAGACAAACACAAG 58.365 45.455 0.00 0.00 0.00 3.16
2720 2852 1.875813 GAGTGACGCTCGCCATCAG 60.876 63.158 0.00 0.00 34.13 2.90
2738 2870 6.920210 GTGTCTCTTTTTCTTTGGGAATTCTG 59.080 38.462 5.23 0.00 33.53 3.02
2749 2881 3.531538 TCTGCGTGTGTCTCTTTTTCTT 58.468 40.909 0.00 0.00 0.00 2.52
2776 2908 4.443857 GCATATGCCAGTGCTCGA 57.556 55.556 17.26 0.00 38.30 4.04
2784 2916 1.072806 GATCACCTGGAGCATATGCCA 59.927 52.381 23.96 14.49 43.38 4.92
2785 2917 1.818642 GATCACCTGGAGCATATGCC 58.181 55.000 23.96 14.86 43.38 4.40
2825 2958 7.279981 GTCTGTAACTATGTGTTGATATTGCCA 59.720 37.037 0.00 0.00 39.55 4.92
2832 2965 4.181578 GGCGTCTGTAACTATGTGTTGAT 58.818 43.478 0.00 0.00 39.55 2.57
2833 2966 3.581755 GGCGTCTGTAACTATGTGTTGA 58.418 45.455 0.00 0.00 39.55 3.18
2836 2969 1.135199 CCGGCGTCTGTAACTATGTGT 60.135 52.381 6.01 0.00 0.00 3.72
2841 2974 2.713967 GGCCCGGCGTCTGTAACTA 61.714 63.158 6.01 0.00 0.00 2.24
2844 2977 4.382320 GTGGCCCGGCGTCTGTAA 62.382 66.667 6.01 0.00 0.00 2.41
2884 3021 0.385390 CACAGTTTGCACCACTTCCC 59.615 55.000 0.00 0.00 0.00 3.97
2893 3030 0.100325 CTTTCCGCACACAGTTTGCA 59.900 50.000 12.16 0.00 40.20 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.