>input_sequence_63744
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-------------ATGGCGTGTGATCAGCGGGGGATGAGAGGTGAGGCG---------GCGGCGGCCGGGGAGGAGGAGA
TGCTTCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCCGCGAACGGCGAGGGCCGGTGG
AACGCGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGA
CCTGCGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCA
AGATCGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAG
CAGCTGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCAT
CCACGCCGCAAAC---AACAACTCCGGCGACGGCGACGTGATAGCGCAGGCGACGGCGGCCGCGCTCCCGGTCGCGGCCG
ACGGGCGGGGCTGGCCCGTCGACGACGTCTTCGACCTCGGCCCCAGCGCTGT---GGCTGATGTGGAGCTGTCATGCACC
ACCGCCCTGTCGTCTTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGC---AGCCCCTGCCCCCGCCGGCGCCCATGGT
GGCTACCGCCGAGAGCGCGCACGGAAGCGTCATCAGCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGA
CGCACGGCGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCAGAGTCGCAGCCGCAGCTGCTCGGCGCCGAG
ACGTGGTGGTCGGATCAGACCTCGCTCCACGCCGGGCTGTACGCCGACGTCGGCTTCCCGGAGCTGGAGTTCGGCGGCGA
GACCATGTGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGA----------------------
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>chr2D_1_TraesCS2D01G096000
TCGGAAAGTTGAGACGGTGGCGGCTCTCTGAAGATGGAATAAAGGTCTCCCCTCCTAGCCCCCGTTCCGGCGGTGCGTCT
AGCATCGTTGGTGGGCGTGTGGAGGTGTGTCTCCGGCATATTTATCTTTGGTGGATTTGCTCGGATCTCGTCGTTGTTCG
TCTACGTTTGTGTGTCTTTGGTTTGGATCCTTCCGATCTACGTTATTTTTCATCGGCGGCGGTTGCTGTTCTGGGGTGCT
GGTCCTATGGGGTCTTAGCACGGCGACTTCCCGACTGTATACTACAACACATTGTGCCCGGCTCCGGCGATGGAGGGGCG
ATGACGGCGGCGTGCCTTCGGCTCGCTTCGGTGCTTGTAGTCGTCGCTAGGTGGTCTACGGATCTGGATGTAATTTTTAT
TTTTGATGTTCGTTGTACTGTCATGATTGAAAATGAATAGATTGAAAGTTTTTCTAAAAAAAATTCATGACCGGTGTAGA
TGCTCTTATTTTTTTCTACGGAGGGAGTACCATGTACGACACGACTGAGCAGTGAAGTCATACACTGGACA-GGGGTCAA
AATCAATGCAAAGCAGCACGAGTAAAATTAAGCTAGCTAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATTT
GGCGCTGTAATTCCAAAAGACGGACTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCAT------CATGC
TTAAACTAATCCTCCACGGTTGCGGCGTGCTCCCC----TGCCTTCCATCATC----CTCATCATCAAGTCTA-------
-----AACTCTTTTCAAGTC-----CAAGCCAAGCCAACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAG
CAAAGCTAGCCAGCCACTGATCTCTCTCACTCCTCTCCTCTC-------------CTCTATATAAGCCCGTCCATGGCGG
ATGGCTCTCCCGCCCTTTTCATCCTCTCATCATTTGATCACCCATATC--GACCCGGA----TAGCTGCTAATCAC--TT
GTCTGTTGTGGAGATGGCGTGTGATCAGCGGGGGATGAGAGGTGAGGCG---------GCGGCGGCCGGGGAGGAGGAGA
TGCTTCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCCGCGAACGGCGAGGGCCGGTGG
AACGCGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGA
CCTGCGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCA
AGATCGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAG
CAGCTGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCAT
CCACGCCGCAAAC---AACAACTCCGGCGACGGCGACGTGATAGCGCAGGCGACGGCGGCCGCGCTCCCGGTCGCGGCCG
ACGGGCGGGGCTGGCCCGTCGACGACGTCTTCGACCTCGGCCCCAGCGCTGT---GGCTGATGTGGAGCTGTCATGCACC
ACCGCCCTGTCGTCTTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGC---AGCCCCTGCCCCCGCCGGCGCCCATGGT
GGCTACCGCCGAGAGCGCGCACGGAAGCGTCATCAGCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGA
CGCACGGCGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCAGAGTCGCAGCCGCAGCTGCTCGGCGCCGAG
ACGTGGTGGTCGGATCAGACCTCGCTCCACGCCGGGCTGTACGCCGACGTCGGCTTCCCGGAGCTGGAGTTCGGCGGCGA
GACCATGTGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACATCA-AACTACC
GGTGACCTGTGGTGACGAAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCT
TCTCCTCTCCTCTCTCAAAACATGAGTATACTTCA---------CTAGCTAGCTAGTGTATCTTCTTCAGTATGTGTACT
ACGTGTAAT---GTTGATGGATCTTTCATTTTTCTTTTTCCTTTTGGACTTTACTCATTCTTTCCTGGGTAAATACGGAG
TGATTGGTTTGTAACCAGCCGTGTGTAACTTTTGATGGCCCGGCTGAGGCCCCAATAAAACTTGAATCAACCATGCATCC
CTAACGAGGCTC------------------------------------TGTAATTTATTGATCTGTGGAGAGAGATCTCT
AATCTTCATGCATGAACATTCTTATGCATGTTACTACAAAGAATTATTCGTCAAGTGGATCAAGATTGTGAGGAGGTGAC
GAAGCAATCACAACAAAAAAGAGTTCGAAATTAGAATGAATTGATCACGTGTGCGTAGCCGACCGCAGTTTTGTATCTGA
AACCATTTGCT----CCATCCCATGCCCCTCCCTCCAGATTATAAAAAGTATTCGGTGCCGATTAGGATGCGAGTCACCT
TCCTCTAATCTAGTCTAGAGAAAGATAAG-------TAGATATTTCAGCTAGACGTCCGTACGGACCGGCCTCTACTCCG
GCCAATCCAATCCAATGATGCCATCAACTGAACATCCTTGTGTTTGTCTTGCTGATGGCGAGCGTCACTCAGAATTCCCA
AAGAAAAAGAGACACACGCAGAATTAATCGAGCACTG-GCATATGCTCCAGGTGATCGAATTGGACAGCACTAGCGATGG
CAATATCAACACATAGTTACAGACGCCGGGCCACGCG----TATGATTAGCAACGCACAAGGGAAGTGGTGCAAACTGTG
TGCGGAAAGGATGTAG-CTAGCATCCATCGCTTTAGCTTT-----GGCATGTCCAGCACATGATGAAAACGGCCGGAGAA
AAGGGCAGG
>chr2A_471
CCGGCT--------------------------------------------------------------------------
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---------------------------------------------------------------------------GTAGA
TGCTCTTATTTTATTTTTAAAGAGGCA------GTACGACACAACTGAGCAGTGAAGTCTACACC-GGACATGGGGTCAA
AATCAAAGCAAAGCAGCACGAGAAAAATTAAGCTAGCTAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATCT
GGCGCTGTAATTCCAAAAGACGGGCTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCATCAGATGCATGC
TTAAACAAATCCTCCACGGTTGCGGCGTGCTCCCCGATCTGCCTTCCATCATCCATCCTCATCATCATCCGTCGTCCAGT
CTACTAACTCTTTTCAAGTCCAAGCCAAGCCAAGCCAACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAG
CAAAGCTAGCCA----------------------CTCCTCTC-------------CTCTATATAAGCCCGTCCATGGCGG
ATGGCTCTCCCGCCCTTTTCATCGTCCCATCATTTGATCACCCATATAGAGATCCGGATAGCTAGCTGCTAGCTTCGCTT
GTCAGTTGTGGCGATGGCGTGTGATCAGCGGGGGATGAGAGGCGAGGAG---------ACGGCGGCGGGGGAGGAGGAGA
TGCTCCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCCGCCAACGGCGAAGGCCGGTGG
AACGCGCTGGCCCGGCGCGCGGGGCTGAAGCGCACCGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGA
CCTGCGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCA
AGATCGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAG
CAGCTGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTGGAGCGCAT
CCACGCCGC---C---AACAGCTCCGGCGAAGGGGACGTGATAGCGCAGGCCACGGCGGCCGCGCTGCCGGTCGCGGCCG
ACGGGCGGTGCTGGGCCGTCGACGACGTGTTCGACCTCGGCCCGGGCGCCGCGGCGGCCGACGTGGAGCTTTCCTGCACC
ACCGCCCTGTCGTCGTCGTCGTCCGTGTCCACGGACGGCTGCGGCGTGC---AGCCCCTGCCCCCGCCGGCGCCCATGGT
GGCTACCGCCGAGAGCGCGCACGGAAGCGTCGTCAGCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGA
CGCACGGCGGCCTCATGATGACCCAAGAACAACAGCACCACCAACGGGCAGAGTCGCA------GCTGCTTGGAGCCGAG
ACGTGGTGGTCCGACCAGACCTCGCTCCACGCGGGGCTGTACGCCGACGTGGGCTTCCCGGAGCTGGAGTTCGGCGGCGA
GACCATGTGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACTAC--------C
GGTGACCTGTGGTAACTGAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCT
TTTC--CTCCTCTCTCAAAACATGAGTATACTTCAGTAACTTCACTAGCTAGCTAGTGTGTCTTCTTCAGTATGTGTACT
ACGTGTAAT---GTTGATGGATCTTTCATTTTTCTTTTTCCTTTTGGACTTTACTCATTCTTTGCTGGGTAAATACGGAG
TGATTGGTTTGTAACCAGCCGTGTGTAACTTTTGATGGCCCGGCTGAGGCCGCAATAAAACTTGAATCAACCATGCATCC
CGATCAGGCTGTGGTGCCAAGAACGCTCTTATATTATGAAACTAAGGGAGTAATTAATTAATCTGTGGGGAGAGACCTCT
AATCTTCATGCATAAACATTCTTATGCATGTTACTACAAAGAATTATTCGTCAAGTAGATCAAGATTATGAGTATGTGAC
AAAGCAACCACAACAAACTAGC---------TAGATTGAATTGATCACGTGTGCGTAACCGACCACAGTTTTGTATCGGA
AACCATTTGCT----CGATCGCATGCCCAT--CTCCAAACTATAAAAAGTATTCGGTGCCGATTAGGATACGAGTCACCT
TCCTCTAATCTAATCTAGAGAAAGATAAGC-------AGATATTTCAGCTAGGCGCCCGTACGGACCGGCCTCTCCGG--
------CCAATCCAATGATGCAATCAACTGAACATCTTTGTGTTTGTCTTGATGATGGCGAGCGTCACTGAGAATTCCCC
TAGAAAAAGAGACACGCGCGGAATTTAACCAAGCACAAGCATATGCTCCAGGTGATCGAATTGGACAGCACTAGCGACCG
CAAT--CAGCACACAGATGCAGACGCCGGGCCACACGTACATATGATTAGCAACGCACAACGGAGGTGGGGCAAACTGTG
TGCGGAAAGGATGTACTCTAGCATCCATCGCTTTAGTTTT----TGGCATGTCCACCACATGATGAAAACGGCCGGAGAA
AAGGGCCGG
>chr2B_541
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-----------------------------------------------------------TACACC-GGACA-GGGGTCAA
AATCAAAGCAAAGCAGGACGAGTAAAATTAAGG----TAGCTTTAACTGGCGTGTGCCCGCGGGTTAGCGTCGTTAATCT
GGTGCTGTAATTCCAAAAGACGGGCTAATCACGCCTCAACTTTTGGCTTTTTCGAGTTTGGTTCATCAT------CATGC
TTAAACTAATCCTCCACGGTTGCGGCGTGCTCCCC----TGCCTTCCATCATCAATCCTCATCATCATCAATCGTCCAGT
---CTAACTCTTTTCAAGTC-----CAAGCCAAGCCAACCAAGCTACCACGGAATACCTCTCTCCCTCCACTACCTACAG
CAAAGCTAGCCA----------------------CTGATCTCTCTCACTCCTCTCCTCTATATAAGCCCGTCCATGGCGG
ATGGCTCTCCCGCCCTTTTCATCGTCTCATCATTTGATCACCCATACAGAGATCCGGA----TAGCTGCTAGCTTCGTTT
GTCTGTTGTGGCGATGGCGTACGATCAGCGGGGGCTGAGAGGCGAGGAGGCAGCGGCGGCGGCGGTGGGGGAGGAGGAGA
TGCTCCGGCGCGGGCCGTGGACGGTGGAGGAGGACGTGCTCCTCGCCAACTACATCGCGGCCAACGGCGAGGGCCGGTGG
AACGCGCTGGCGCGGCGCGCGGGGCTGAAGCGCACGGGCAAGAGCTGCCGCCTGCGGTGGCTCAACTACCTGCGGCCGGA
CCTGCGGCGCGGCGGCATGACGGCGGAGGAGCAGCTGCTCGTCCTCGAGCTGCACGCGCGGTGGGGCAACCGGTGGTCCA
AGATCGCGCAGCACCTCCCCGGCCGCACCGACAACGAGATCAAGAACTACTGGCGGACGCGGGTGCAGCGCCACGCCAAG
CAGCTGCGGTGCGACGTCGGCAGCCAGCGGTTCAGGGACCTCGTGCGCGGCCTCTGGATCCCCCGCCTCCTCGAGCGCAT
CCACGCCGC---CGCCAACAACTCCGGCGACGGCGACGTGATAGCGCAGGCCACGGCGGCCGCGCTGCCCGTCGCGGCGG
ACGGGCGGTGCTGGCCCGTCGACGACGTGTTCGACCTCGGCCCCGGCGCCGCGGC---CGACGTGGAGCTGTCATGCACC
ACCGCCCTGTCCTCGTCGTCGTCGGTGTCCACGGACGGCTGCGGCGTGCTGCAGCCCCTGCCCGCGCCGGCGCCCATGGT
GGCTACCGCCGAGAGCGCGCGCGGAAGCGTCATCATCAGCGCTGCCATGCACGACACGGCGCTCTGGCAGCCGCCGCAGA
CTCACGGCGGCCTCATGATGACCCAAGAACAACAGCACCACCAACAGGCTGAGTCGCAGCCGCAGCTGCTCGGCGCCGAG
ACGTGGTGGTCCGACCAGACCTCGCTCCCCGCCGGGCTGTACGCCGACGTGGGCTTCCCGGAGCTGGAGTTCGGCGGCGA
GACCATGTGGGGCGCCTGCGCCGATGACCTGTGGTGCACGGACATGCTGGGGCTGTGAAACATCAAACTACTCAACTACC
GGTGACCTGGGGTAACTGAGGGGAAGGTTATTATCGGAGCGTTCGCTACTAATCTTGCACTTAGCGCTCCAATAATCCCG
TCTC--CTCTTCCCTCAAAACATGAGTATACTTCACTA---------GCTAGCTAGTGTGTCTTCTTCAGTATGTGTACT
ACGTGTAATGTCGTTGATGGATCTTTCATTTTTCTTTTCTCTTTTGGACTTTACTCATTCTTTCCTGGGTAAATACGGAG
TGATTGGTTTGTAACCAGCCGTGTGTAACTTTTGATGGCC-----------GCAATAAAACTTGAATCGAACATGCATCC
CTGACGAGGCT------------------------------------GTGCAATCGATTAATCTGTCGAGAGAGATATGT
AATGTAACCTTC-----------ATGCATGTTACTACAAAGAATTATTCGTCAAGTAGATGAAGAT--TGAGGAGGTGAC
GAAGCAATCACAACAAAAAAAGAG------TTAGAATGAATTGATCACGTGTGCGTAACCGGCCACAGTTTTGTATCACA
AGCCATTTGCTCGATCGATCGCATGCCCGT--CTCCAAACTATAAAAAGTATTCGGTGCCGATTAGGATACGAGTCACCT
TCCTCTAATCTAATCTAATCTAGAGGAAGATAACTCTAGATATTTTGGCTAGACGTCCGTACGGACCGGCGTCTCCGG--
------CCAATCCAATGATGCAATCAACTGAACATCTTTGTGTTTGTCTTGATGATGGAGAGTGCCACTTAC-AGTACCA
CCGAGGAACATACACACACAGAATTAACCAAGCA------------------TGATCGAATTGGACAGCACTAGCGACGG
CGAT--CAGCACAAACATAGAGACGCCGGGCCACGCG----TATGATTAGCAACA-ACAACGAAAGTGGGGCAAACTGTG
TGCGGAAAGGATGTAG-----CATCCGTCGCTTTAGTTTTATTTTGGCATGTCCAGCACATGATGAAAACGGCCGGAGAA
AAGGGC---
>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------------S--S-SSSSSS--SSSSSSSS---------S----------------SSSSS-S--------------
------S-----------------------------------------------------------------------S-
-----------------------S--------------------------------------------------------
-------------------------------------------------------------------SSSS-S-------
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------------SSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
-----------------------S-----------------------S----S------------------SSSS-----
-----------S------------------------------S----S------------------S-------------
----S--------------------------------------------------------S------------------
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---------SSS---------------------------------------S--------------S-------------
--------S-------------------S---------------S----S-S------S--S------------------
--------------S-----------------------------------------------------------------
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-----------S--S-----------------------------------S-----------------------------
--------------------------------------------------------------------SS-S--------
-------------S--SS--------------------------------------------------------------
----SS-----------------------------------------------------S--------------------
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---------------------------------------------------S----------------------------
-----------S-------------------------------------------S---S--------------------
-------------S------------------------------------------S----------S------------
---------------------SSSSSSSSS---------------------------S------S------------S--
----------------S---S-------S-SS-----S-S-----------------------------S----------
------------S-------------------------------------------------------------S-SSSS
SSSSSS---------------S--------------S--------------S-----------------S----------
S--------------------------S-S----SSS----------------------------------------S--
----SS--S----S--S-------------------------------------------S--------S----------
------------------------------------S-------------------------------------------
------S--
>forward_20
TCGGAAAGTTGAGACGGTGG------------------------------------------------------------
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>reverse_1659
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----------------------------------------------------------TGATGTGGAGCTGTCATGCA--
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>forward_908
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--------GCCAGCCACTGATCTCTCTC----------------------------------------------------
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>reverse_2548
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-------------------------------------------------------------------GTGAGGAGGTGAC
GAAGCAA-------------------------------------------------------------------------
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