Multiple sequence alignment - TraesCS2D01G093900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G093900 chr2D 100.000 3282 0 0 1 3282 45548975 45545694 0.000000e+00 6061
1 TraesCS2D01G093900 chr2D 94.463 307 15 2 2802 3107 197394140 197394445 3.830000e-129 472
2 TraesCS2D01G093900 chr2D 93.891 311 17 2 2798 3107 474177287 474177596 4.960000e-128 468
3 TraesCS2D01G093900 chr2B 92.017 2856 123 41 1 2807 72590229 72587430 0.000000e+00 3914
4 TraesCS2D01G093900 chr2B 83.815 346 47 8 5 345 212165761 212165420 1.470000e-83 320
5 TraesCS2D01G093900 chr2B 93.750 160 10 0 3123 3282 72587411 72587252 1.180000e-59 241
6 TraesCS2D01G093900 chr1D 85.926 1620 177 23 1019 2618 7510039 7511627 0.000000e+00 1681
7 TraesCS2D01G093900 chr1D 83.077 195 18 5 1025 1215 7037788 7037605 2.620000e-36 163
8 TraesCS2D01G093900 chr1B 85.643 1602 175 30 1036 2618 9712665 9711100 0.000000e+00 1633
9 TraesCS2D01G093900 chr1B 93.443 305 20 0 2803 3107 40744 40440 1.390000e-123 453
10 TraesCS2D01G093900 chr4A 85.507 966 113 16 956 1909 727127577 727128527 0.000000e+00 983
11 TraesCS2D01G093900 chr4A 83.706 626 79 13 962 1578 727190836 727190225 1.320000e-158 569
12 TraesCS2D01G093900 chr4A 90.476 315 27 2 1973 2287 727128632 727128943 2.360000e-111 412
13 TraesCS2D01G093900 chr4D 95.286 297 14 0 2805 3101 235796763 235797059 3.830000e-129 472
14 TraesCS2D01G093900 chr6D 93.871 310 19 0 2798 3107 256170550 256170859 4.960000e-128 468
15 TraesCS2D01G093900 chr7B 93.443 305 16 4 2805 3107 96926702 96927004 1.800000e-122 449
16 TraesCS2D01G093900 chr7B 82.051 234 39 3 110 342 204892043 204892274 2.580000e-46 196
17 TraesCS2D01G093900 chr5D 93.421 304 18 2 2805 3107 12608230 12607928 1.800000e-122 449
18 TraesCS2D01G093900 chr5D 77.733 247 51 3 422 667 558946044 558945801 7.340000e-32 148
19 TraesCS2D01G093900 chr4B 93.421 304 18 2 2805 3107 330786925 330786623 1.800000e-122 449
20 TraesCS2D01G093900 chr3D 93.399 303 19 1 2805 3107 189285302 189285603 6.460000e-122 448
21 TraesCS2D01G093900 chr3D 81.651 327 50 9 26 346 548466992 548467314 2.510000e-66 263
22 TraesCS2D01G093900 chr3D 79.143 350 62 10 3 345 444193827 444193482 7.080000e-57 231
23 TraesCS2D01G093900 chr3D 80.427 281 44 6 422 700 602204653 602204924 1.540000e-48 204
24 TraesCS2D01G093900 chr6B 84.840 343 43 8 4 341 508933457 508933795 1.460000e-88 337
25 TraesCS2D01G093900 chr6A 84.375 352 45 9 1 346 421255942 421256289 1.460000e-88 337
26 TraesCS2D01G093900 chr6A 78.448 348 58 13 7 346 475450826 475450488 9.230000e-51 211
27 TraesCS2D01G093900 chr2A 84.639 332 45 6 5 333 145230474 145230802 3.160000e-85 326
28 TraesCS2D01G093900 chr5B 78.629 248 48 4 422 667 693012700 693012944 3.390000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G093900 chr2D 45545694 45548975 3281 True 6061.0 6061 100.0000 1 3282 1 chr2D.!!$R1 3281
1 TraesCS2D01G093900 chr2B 72587252 72590229 2977 True 2077.5 3914 92.8835 1 3282 2 chr2B.!!$R2 3281
2 TraesCS2D01G093900 chr1D 7510039 7511627 1588 False 1681.0 1681 85.9260 1019 2618 1 chr1D.!!$F1 1599
3 TraesCS2D01G093900 chr1B 9711100 9712665 1565 True 1633.0 1633 85.6430 1036 2618 1 chr1B.!!$R2 1582
4 TraesCS2D01G093900 chr4A 727127577 727128943 1366 False 697.5 983 87.9915 956 2287 2 chr4A.!!$F1 1331
5 TraesCS2D01G093900 chr4A 727190225 727190836 611 True 569.0 569 83.7060 962 1578 1 chr4A.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 450 0.106918 AACTCAGTTGGCCGAAACCA 60.107 50.0 0.0 0.0 38.16 3.67 F
2098 2199 0.318441 ATATGGTGGTCGGATCTGCG 59.682 55.0 0.0 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 2213 1.566018 CGCCTCCTTTGACACGGTTC 61.566 60.0 0.0 0.0 0.00 3.62 R
3148 3266 0.908910 AAGTGTGTGTGTCCACCTCA 59.091 50.0 0.0 0.0 41.09 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.689959 CAAAGATTTGGCGCACACTC 58.310 50.000 10.83 4.79 34.59 3.51
78 80 2.051334 TCGGCATGTTTTATCCCCTG 57.949 50.000 0.00 0.00 0.00 4.45
94 96 2.385803 CCCTGATGTAACCGACCTAGT 58.614 52.381 0.00 0.00 0.00 2.57
96 98 3.956199 CCCTGATGTAACCGACCTAGTTA 59.044 47.826 0.00 0.00 0.00 2.24
97 99 4.202090 CCCTGATGTAACCGACCTAGTTAC 60.202 50.000 6.82 6.82 46.33 2.50
111 114 1.852633 AGTTACACCCTACGTACCCC 58.147 55.000 0.00 0.00 0.00 4.95
129 132 0.892755 CCCCGCGTCTATATAAGCCA 59.107 55.000 4.92 0.00 0.00 4.75
130 133 1.135083 CCCCGCGTCTATATAAGCCAG 60.135 57.143 4.92 0.00 0.00 4.85
140 143 5.783875 GTCTATATAAGCCAGGGGGTTTAGA 59.216 44.000 4.90 4.37 42.23 2.10
143 149 0.477795 AAGCCAGGGGGTTTAGACCT 60.478 55.000 1.94 0.00 40.84 3.85
246 257 1.123756 GCAAGACGTCGAGTTTTACCG 59.876 52.381 10.46 0.00 0.00 4.02
247 258 2.388121 CAAGACGTCGAGTTTTACCGT 58.612 47.619 10.46 0.00 0.00 4.83
258 269 1.462283 GTTTTACCGTTTCGAGAGGGC 59.538 52.381 14.09 0.00 0.00 5.19
267 278 2.441532 CGAGAGGGCCCGAACCTA 60.442 66.667 18.44 0.00 38.79 3.08
280 291 4.738839 GCCCGAACCTAGGTAAATACTGTC 60.739 50.000 16.67 5.33 0.00 3.51
285 296 7.194962 CGAACCTAGGTAAATACTGTCTCTTC 58.805 42.308 16.67 2.53 0.00 2.87
291 302 9.575783 CTAGGTAAATACTGTCTCTTCTTTGTC 57.424 37.037 0.00 0.00 0.00 3.18
303 314 5.306937 TCTCTTCTTTGTCCTGTTACCATCA 59.693 40.000 0.00 0.00 0.00 3.07
336 347 2.188161 GCTCGGGACCCTCTACTCG 61.188 68.421 9.41 0.00 0.00 4.18
337 348 1.525923 CTCGGGACCCTCTACTCGA 59.474 63.158 9.41 0.00 0.00 4.04
345 356 1.243902 CCCTCTACTCGAGATCAGCC 58.756 60.000 21.68 0.00 42.62 4.85
346 357 1.202879 CCCTCTACTCGAGATCAGCCT 60.203 57.143 21.68 0.00 42.62 4.58
349 373 2.807967 CTCTACTCGAGATCAGCCTCAG 59.192 54.545 21.68 2.98 42.62 3.35
372 396 0.452784 GCTCGTGGCGAACATCAAAC 60.453 55.000 0.00 0.00 34.74 2.93
378 402 1.339610 TGGCGAACATCAAACCTTTGG 59.660 47.619 0.00 0.00 38.66 3.28
410 435 4.492791 TTTTACGGGCTTGCTAAAACTC 57.507 40.909 0.00 0.00 0.00 3.01
414 439 1.880027 CGGGCTTGCTAAAACTCAGTT 59.120 47.619 0.00 0.00 0.00 3.16
418 443 2.608016 GCTTGCTAAAACTCAGTTGGCC 60.608 50.000 0.00 0.00 0.00 5.36
421 446 1.877443 GCTAAAACTCAGTTGGCCGAA 59.123 47.619 0.00 0.00 0.00 4.30
423 448 2.863401 AAAACTCAGTTGGCCGAAAC 57.137 45.000 0.00 0.00 0.00 2.78
424 449 1.029681 AAACTCAGTTGGCCGAAACC 58.970 50.000 0.00 0.00 0.00 3.27
425 450 0.106918 AACTCAGTTGGCCGAAACCA 60.107 50.000 0.00 0.00 38.16 3.67
448 478 1.403323 TCTCAGTCGACTGCATAGCTG 59.597 52.381 35.48 19.49 43.46 4.24
465 495 1.134907 GCTGTTGGATCTTTGCATGGG 60.135 52.381 0.00 0.00 0.00 4.00
470 500 2.669781 TGGATCTTTGCATGGGGATTC 58.330 47.619 0.00 0.00 0.00 2.52
471 501 1.610522 GGATCTTTGCATGGGGATTCG 59.389 52.381 0.00 0.00 0.00 3.34
519 549 3.445096 CCCTCACAACATTCTTTCCCATC 59.555 47.826 0.00 0.00 0.00 3.51
557 587 0.463654 TACCGGTTGCAGCATCCATC 60.464 55.000 15.04 0.00 0.00 3.51
583 613 3.865446 CTGGTTGTAGCATGTCATCTCA 58.135 45.455 0.00 0.00 0.00 3.27
584 614 4.449131 CTGGTTGTAGCATGTCATCTCAT 58.551 43.478 0.00 0.00 0.00 2.90
585 615 4.445453 TGGTTGTAGCATGTCATCTCATC 58.555 43.478 0.00 0.00 0.00 2.92
586 616 3.492383 GGTTGTAGCATGTCATCTCATCG 59.508 47.826 0.00 0.00 0.00 3.84
587 617 4.115516 GTTGTAGCATGTCATCTCATCGT 58.884 43.478 0.00 0.00 0.00 3.73
588 618 5.281727 GTTGTAGCATGTCATCTCATCGTA 58.718 41.667 0.00 0.00 0.00 3.43
589 619 4.860072 TGTAGCATGTCATCTCATCGTAC 58.140 43.478 0.00 0.00 0.00 3.67
590 620 4.338118 TGTAGCATGTCATCTCATCGTACA 59.662 41.667 0.00 0.00 0.00 2.90
591 621 3.711086 AGCATGTCATCTCATCGTACAC 58.289 45.455 0.00 0.00 0.00 2.90
592 622 3.131046 AGCATGTCATCTCATCGTACACA 59.869 43.478 0.00 0.00 0.00 3.72
593 623 3.865164 GCATGTCATCTCATCGTACACAA 59.135 43.478 0.00 0.00 0.00 3.33
594 624 4.259970 GCATGTCATCTCATCGTACACAAC 60.260 45.833 0.00 0.00 0.00 3.32
595 625 4.513198 TGTCATCTCATCGTACACAACA 57.487 40.909 0.00 0.00 0.00 3.33
596 626 5.072040 TGTCATCTCATCGTACACAACAT 57.928 39.130 0.00 0.00 0.00 2.71
597 627 5.102313 TGTCATCTCATCGTACACAACATC 58.898 41.667 0.00 0.00 0.00 3.06
598 628 5.105756 TGTCATCTCATCGTACACAACATCT 60.106 40.000 0.00 0.00 0.00 2.90
599 629 5.230936 GTCATCTCATCGTACACAACATCTG 59.769 44.000 0.00 0.00 0.00 2.90
620 650 1.269166 CCTCGTCGATTGTAGCACAC 58.731 55.000 0.00 0.00 0.00 3.82
622 652 0.455464 TCGTCGATTGTAGCACACCG 60.455 55.000 0.00 0.00 0.00 4.94
643 673 1.167851 CACACCGGATGCAACATCTT 58.832 50.000 9.46 0.00 0.00 2.40
644 674 1.131126 CACACCGGATGCAACATCTTC 59.869 52.381 9.46 0.00 0.00 2.87
673 703 4.698575 TGTTTGTAGCATGTAGTCACACA 58.301 39.130 0.00 0.00 37.54 3.72
682 712 3.380479 TGTAGTCACACAGGTTGTAGC 57.620 47.619 0.00 0.00 35.67 3.58
683 713 2.696187 TGTAGTCACACAGGTTGTAGCA 59.304 45.455 0.00 0.00 35.67 3.49
692 722 3.565482 CACAGGTTGTAGCATCTGTTGTT 59.435 43.478 0.00 0.00 38.27 2.83
733 763 8.351495 TCTTGCAACATTTTTAATCACTGTTC 57.649 30.769 0.00 0.00 0.00 3.18
734 764 6.746104 TGCAACATTTTTAATCACTGTTCG 57.254 33.333 0.00 0.00 0.00 3.95
735 765 5.174761 TGCAACATTTTTAATCACTGTTCGC 59.825 36.000 0.00 0.00 0.00 4.70
736 766 5.174761 GCAACATTTTTAATCACTGTTCGCA 59.825 36.000 0.00 0.00 0.00 5.10
749 779 3.567530 CTGTTCGCAGCATTTTTCATCA 58.432 40.909 0.00 0.00 38.53 3.07
750 780 3.307674 TGTTCGCAGCATTTTTCATCAC 58.692 40.909 0.00 0.00 0.00 3.06
751 781 3.004629 TGTTCGCAGCATTTTTCATCACT 59.995 39.130 0.00 0.00 0.00 3.41
752 782 3.206034 TCGCAGCATTTTTCATCACTG 57.794 42.857 0.00 0.00 0.00 3.66
753 783 2.553602 TCGCAGCATTTTTCATCACTGT 59.446 40.909 0.00 0.00 0.00 3.55
754 784 3.004629 TCGCAGCATTTTTCATCACTGTT 59.995 39.130 0.00 0.00 0.00 3.16
755 785 3.120616 CGCAGCATTTTTCATCACTGTTG 59.879 43.478 0.00 0.00 0.00 3.33
767 797 0.607217 CACTGTTGGCAGCATCCAGA 60.607 55.000 3.98 0.00 46.30 3.86
768 798 0.330604 ACTGTTGGCAGCATCCAGAT 59.669 50.000 3.98 0.00 46.30 2.90
815 845 3.063588 CGCTGATGTCAGTCTACTAACGA 59.936 47.826 11.35 0.00 45.45 3.85
827 857 6.908284 CAGTCTACTAACGATTGAGTTCTAGC 59.092 42.308 0.00 0.00 35.70 3.42
836 866 1.185618 TGAGTTCTAGCCACGCCTGT 61.186 55.000 0.00 0.00 0.00 4.00
882 913 4.834496 TCAAAGGCTTTCTCCATCAATGTT 59.166 37.500 10.08 0.00 0.00 2.71
900 931 4.022464 TGTTGTCACGGAAAACAATCAC 57.978 40.909 7.05 0.00 36.91 3.06
908 939 3.244976 CGGAAAACAATCACCATCTTGC 58.755 45.455 0.00 0.00 0.00 4.01
920 951 4.282957 TCACCATCTTGCCTTTTTAATGCA 59.717 37.500 0.00 0.00 0.00 3.96
921 952 4.996122 CACCATCTTGCCTTTTTAATGCAA 59.004 37.500 0.00 0.00 42.28 4.08
948 979 3.820467 TCACATCGCATCCAAAGACTTTT 59.180 39.130 0.00 0.00 0.00 2.27
949 980 5.000591 TCACATCGCATCCAAAGACTTTTA 58.999 37.500 0.00 0.00 0.00 1.52
950 981 5.471797 TCACATCGCATCCAAAGACTTTTAA 59.528 36.000 0.00 0.00 0.00 1.52
952 983 6.808212 CACATCGCATCCAAAGACTTTTAATT 59.192 34.615 0.00 0.00 0.00 1.40
956 987 6.015856 TCGCATCCAAAGACTTTTAATTTCCA 60.016 34.615 0.00 0.00 0.00 3.53
966 1001 8.986477 AGACTTTTAATTTCCATGTGTTATGC 57.014 30.769 0.00 0.00 0.00 3.14
1008 1047 3.630769 GGAGAGCAATCTTGATGCATTCA 59.369 43.478 0.00 0.00 46.22 2.57
1066 1113 1.332195 GGAGCTCAACAAAGGCCTTT 58.668 50.000 25.47 25.47 0.00 3.11
1080 1127 3.716431 AGGCCTTTCCATCATTCAACAT 58.284 40.909 0.00 0.00 37.29 2.71
1107 1158 1.337817 CGTCGCACGACCAAGAAGAG 61.338 60.000 16.81 0.00 46.05 2.85
1110 1161 0.319555 CGCACGACCAAGAAGAGGAA 60.320 55.000 0.00 0.00 0.00 3.36
1614 1668 4.090057 GCAAAGGACGCAGGCGAC 62.090 66.667 21.62 14.29 42.83 5.19
1640 1694 3.361977 GTTCAACGCCGGCATGGT 61.362 61.111 28.98 14.07 41.21 3.55
1728 1782 3.948086 CTCACTGGTCGACGTCGGC 62.948 68.421 35.05 34.10 44.28 5.54
2098 2199 0.318441 ATATGGTGGTCGGATCTGCG 59.682 55.000 0.00 0.00 0.00 5.18
2201 2302 0.747283 GGAGCATGAGTGGAGCAAGG 60.747 60.000 0.00 0.00 0.00 3.61
2333 2434 7.331440 TGTTATGGATTTGAATGCAATGTTGTC 59.669 33.333 2.04 0.00 40.19 3.18
2345 2446 4.021280 TGCAATGTTGTCTGCAATTGGTAT 60.021 37.500 7.72 0.00 45.25 2.73
2436 2551 6.388259 AAAAACATGTTTCACAGTCAAACG 57.612 33.333 23.47 0.00 36.66 3.60
2465 2580 3.679025 TGCAAAATCGCCATGCTTTTAAG 59.321 39.130 0.00 0.00 40.66 1.85
2505 2620 5.183904 GCCACTGAGGAATTTACAACATCTT 59.816 40.000 0.00 0.00 41.22 2.40
2541 2658 4.875536 ACATTTTCTTCTTGCAACCCAAAC 59.124 37.500 0.00 0.00 31.94 2.93
2685 2802 8.726988 GTGTATTTGCTTTTCACTGGATACTTA 58.273 33.333 0.00 0.00 37.61 2.24
2720 2837 1.123928 ATCACCGGGTTCAGATCCTC 58.876 55.000 6.32 0.00 0.00 3.71
2728 2845 1.677217 GGTTCAGATCCTCACAGGCAC 60.677 57.143 0.00 0.00 34.61 5.01
2810 2928 7.923414 AAAAACTGATGAACTATGTACTCCC 57.077 36.000 0.00 0.00 0.00 4.30
2811 2929 6.875972 AAACTGATGAACTATGTACTCCCT 57.124 37.500 0.00 0.00 0.00 4.20
2812 2930 6.472686 AACTGATGAACTATGTACTCCCTC 57.527 41.667 0.00 0.00 0.00 4.30
2813 2931 4.896482 ACTGATGAACTATGTACTCCCTCC 59.104 45.833 0.00 0.00 0.00 4.30
2814 2932 5.144100 CTGATGAACTATGTACTCCCTCCT 58.856 45.833 0.00 0.00 0.00 3.69
2815 2933 5.529289 TGATGAACTATGTACTCCCTCCTT 58.471 41.667 0.00 0.00 0.00 3.36
2816 2934 5.598830 TGATGAACTATGTACTCCCTCCTTC 59.401 44.000 0.00 0.00 0.00 3.46
2818 2936 3.331718 ACTATGTACTCCCTCCTTCCC 57.668 52.381 0.00 0.00 0.00 3.97
2820 2938 0.398664 ATGTACTCCCTCCTTCCCGG 60.399 60.000 0.00 0.00 0.00 5.73
2821 2939 1.001376 GTACTCCCTCCTTCCCGGT 59.999 63.158 0.00 0.00 0.00 5.28
2822 2940 0.616964 GTACTCCCTCCTTCCCGGTT 60.617 60.000 0.00 0.00 0.00 4.44
2823 2941 0.117742 TACTCCCTCCTTCCCGGTTT 59.882 55.000 0.00 0.00 0.00 3.27
2825 2943 1.274242 ACTCCCTCCTTCCCGGTTTAT 60.274 52.381 0.00 0.00 0.00 1.40
2826 2944 2.022722 ACTCCCTCCTTCCCGGTTTATA 60.023 50.000 0.00 0.00 0.00 0.98
2827 2945 2.633481 CTCCCTCCTTCCCGGTTTATAG 59.367 54.545 0.00 0.00 0.00 1.31
2828 2946 1.697982 CCCTCCTTCCCGGTTTATAGG 59.302 57.143 0.00 1.24 0.00 2.57
2837 2955 4.203654 CCCGGTTTATAGGGCTTATCTC 57.796 50.000 0.00 0.00 41.34 2.75
2838 2956 3.581332 CCCGGTTTATAGGGCTTATCTCA 59.419 47.826 0.00 0.00 41.34 3.27
2839 2957 4.041198 CCCGGTTTATAGGGCTTATCTCAA 59.959 45.833 0.00 0.00 41.34 3.02
2840 2958 5.455612 CCCGGTTTATAGGGCTTATCTCAAA 60.456 44.000 0.00 0.00 41.34 2.69
2841 2959 6.238648 CCGGTTTATAGGGCTTATCTCAAAT 58.761 40.000 0.00 0.00 0.00 2.32
2842 2960 7.391620 CCGGTTTATAGGGCTTATCTCAAATA 58.608 38.462 0.00 0.00 0.00 1.40
2843 2961 7.881232 CCGGTTTATAGGGCTTATCTCAAATAA 59.119 37.037 0.00 0.00 0.00 1.40
2844 2962 9.449719 CGGTTTATAGGGCTTATCTCAAATAAT 57.550 33.333 0.00 0.00 0.00 1.28
2850 2968 7.978099 AGGGCTTATCTCAAATAATTTGGTT 57.022 32.000 0.00 0.00 40.98 3.67
2851 2969 8.379428 AGGGCTTATCTCAAATAATTTGGTTT 57.621 30.769 0.00 0.00 40.98 3.27
2852 2970 8.478066 AGGGCTTATCTCAAATAATTTGGTTTC 58.522 33.333 0.00 0.00 40.98 2.78
2853 2971 7.710907 GGGCTTATCTCAAATAATTTGGTTTCC 59.289 37.037 0.00 0.00 40.98 3.13
2854 2972 7.710907 GGCTTATCTCAAATAATTTGGTTTCCC 59.289 37.037 0.00 0.00 40.98 3.97
2855 2973 8.257306 GCTTATCTCAAATAATTTGGTTTCCCA 58.743 33.333 0.00 0.00 40.98 4.37
2869 2987 8.713708 TTTGGTTTCCCATTTTATAAGTCTCA 57.286 30.769 0.00 0.00 41.49 3.27
2870 2988 8.713708 TTGGTTTCCCATTTTATAAGTCTCAA 57.286 30.769 0.00 0.00 41.49 3.02
2871 2989 8.893563 TGGTTTCCCATTTTATAAGTCTCAAT 57.106 30.769 0.00 0.00 35.17 2.57
2872 2990 9.320295 TGGTTTCCCATTTTATAAGTCTCAATT 57.680 29.630 0.00 0.00 35.17 2.32
2887 3005 8.822652 AAGTCTCAATTTGATTGTTTTCCATC 57.177 30.769 0.00 0.00 41.02 3.51
2888 3006 7.954835 AGTCTCAATTTGATTGTTTTCCATCA 58.045 30.769 0.00 0.00 41.02 3.07
2889 3007 7.869429 AGTCTCAATTTGATTGTTTTCCATCAC 59.131 33.333 0.00 0.00 41.02 3.06
2890 3008 7.652909 GTCTCAATTTGATTGTTTTCCATCACA 59.347 33.333 0.00 0.00 41.02 3.58
2891 3009 8.369424 TCTCAATTTGATTGTTTTCCATCACAT 58.631 29.630 0.00 0.00 41.02 3.21
2892 3010 8.312896 TCAATTTGATTGTTTTCCATCACATG 57.687 30.769 0.00 0.00 41.02 3.21
2893 3011 6.730960 ATTTGATTGTTTTCCATCACATGC 57.269 33.333 0.00 0.00 0.00 4.06
2894 3012 5.471556 TTGATTGTTTTCCATCACATGCT 57.528 34.783 0.00 0.00 0.00 3.79
2895 3013 5.063180 TGATTGTTTTCCATCACATGCTC 57.937 39.130 0.00 0.00 0.00 4.26
2896 3014 4.523558 TGATTGTTTTCCATCACATGCTCA 59.476 37.500 0.00 0.00 0.00 4.26
2897 3015 4.933505 TTGTTTTCCATCACATGCTCAA 57.066 36.364 0.00 0.00 0.00 3.02
2898 3016 4.933505 TGTTTTCCATCACATGCTCAAA 57.066 36.364 0.00 0.00 0.00 2.69
2899 3017 5.471556 TGTTTTCCATCACATGCTCAAAT 57.528 34.783 0.00 0.00 0.00 2.32
2900 3018 5.856156 TGTTTTCCATCACATGCTCAAATT 58.144 33.333 0.00 0.00 0.00 1.82
2901 3019 6.289834 TGTTTTCCATCACATGCTCAAATTT 58.710 32.000 0.00 0.00 0.00 1.82
2902 3020 6.424509 TGTTTTCCATCACATGCTCAAATTTC 59.575 34.615 0.00 0.00 0.00 2.17
2903 3021 5.725325 TTCCATCACATGCTCAAATTTCA 57.275 34.783 0.00 0.00 0.00 2.69
2904 3022 5.725325 TCCATCACATGCTCAAATTTCAA 57.275 34.783 0.00 0.00 0.00 2.69
2905 3023 5.716094 TCCATCACATGCTCAAATTTCAAG 58.284 37.500 0.00 0.00 0.00 3.02
2906 3024 4.868171 CCATCACATGCTCAAATTTCAAGG 59.132 41.667 0.00 0.00 0.00 3.61
2907 3025 5.475719 CATCACATGCTCAAATTTCAAGGT 58.524 37.500 0.00 0.00 0.00 3.50
2908 3026 4.873817 TCACATGCTCAAATTTCAAGGTG 58.126 39.130 0.00 0.00 0.00 4.00
2909 3027 3.430895 CACATGCTCAAATTTCAAGGTGC 59.569 43.478 0.00 0.00 0.00 5.01
2910 3028 3.069872 ACATGCTCAAATTTCAAGGTGCA 59.930 39.130 5.72 5.72 0.00 4.57
2911 3029 4.250464 CATGCTCAAATTTCAAGGTGCAT 58.750 39.130 8.95 8.95 39.99 3.96
2912 3030 4.339872 TGCTCAAATTTCAAGGTGCATT 57.660 36.364 0.00 0.00 0.00 3.56
2913 3031 5.465532 TGCTCAAATTTCAAGGTGCATTA 57.534 34.783 0.00 0.00 0.00 1.90
2914 3032 5.851720 TGCTCAAATTTCAAGGTGCATTAA 58.148 33.333 0.00 0.00 0.00 1.40
2915 3033 6.465948 TGCTCAAATTTCAAGGTGCATTAAT 58.534 32.000 0.00 0.00 0.00 1.40
2916 3034 6.935771 TGCTCAAATTTCAAGGTGCATTAATT 59.064 30.769 0.00 0.00 0.00 1.40
2917 3035 7.118101 TGCTCAAATTTCAAGGTGCATTAATTC 59.882 33.333 0.00 0.00 0.00 2.17
2918 3036 7.118101 GCTCAAATTTCAAGGTGCATTAATTCA 59.882 33.333 0.00 0.00 0.00 2.57
2919 3037 9.158233 CTCAAATTTCAAGGTGCATTAATTCAT 57.842 29.630 0.00 0.00 0.00 2.57
2920 3038 9.504708 TCAAATTTCAAGGTGCATTAATTCATT 57.495 25.926 0.00 0.00 0.00 2.57
2921 3039 9.549509 CAAATTTCAAGGTGCATTAATTCATTG 57.450 29.630 0.00 0.00 0.00 2.82
2922 3040 6.724694 TTTCAAGGTGCATTAATTCATTGC 57.275 33.333 0.00 0.00 36.91 3.56
2923 3041 5.402997 TCAAGGTGCATTAATTCATTGCA 57.597 34.783 5.94 5.94 43.63 4.08
2924 3042 5.979993 TCAAGGTGCATTAATTCATTGCAT 58.020 33.333 11.56 0.00 46.90 3.96
2925 3043 5.813157 TCAAGGTGCATTAATTCATTGCATG 59.187 36.000 11.56 7.60 46.90 4.06
2926 3044 4.124238 AGGTGCATTAATTCATTGCATGC 58.876 39.130 11.82 11.82 46.90 4.06
2927 3045 3.872182 GGTGCATTAATTCATTGCATGCA 59.128 39.130 18.46 18.46 46.90 3.96
2928 3046 4.333095 GGTGCATTAATTCATTGCATGCAA 59.667 37.500 33.57 33.57 46.90 4.08
2929 3047 5.498159 GTGCATTAATTCATTGCATGCAAG 58.502 37.500 34.15 25.40 46.90 4.01
2930 3048 4.572795 TGCATTAATTCATTGCATGCAAGG 59.427 37.500 33.26 33.26 41.14 3.61
2931 3049 4.812091 GCATTAATTCATTGCATGCAAGGA 59.188 37.500 36.30 36.30 43.57 3.36
2932 3050 5.468746 GCATTAATTCATTGCATGCAAGGAT 59.531 36.000 38.83 29.59 44.42 3.24
2933 3051 6.017440 GCATTAATTCATTGCATGCAAGGATT 60.017 34.615 38.83 32.90 44.42 3.01
2934 3052 7.171848 GCATTAATTCATTGCATGCAAGGATTA 59.828 33.333 38.83 31.85 44.42 1.75
2935 3053 9.214957 CATTAATTCATTGCATGCAAGGATTAT 57.785 29.630 38.83 29.52 44.42 1.28
2936 3054 8.596271 TTAATTCATTGCATGCAAGGATTATG 57.404 30.769 38.83 28.71 44.42 1.90
2937 3055 5.855740 TTCATTGCATGCAAGGATTATGA 57.144 34.783 38.83 30.19 44.42 2.15
2938 3056 5.447624 TCATTGCATGCAAGGATTATGAG 57.552 39.130 36.30 17.77 41.00 2.90
2939 3057 5.134661 TCATTGCATGCAAGGATTATGAGA 58.865 37.500 36.30 17.30 41.00 3.27
2940 3058 5.595133 TCATTGCATGCAAGGATTATGAGAA 59.405 36.000 36.30 16.64 41.00 2.87
2941 3059 5.918426 TTGCATGCAAGGATTATGAGAAA 57.082 34.783 28.80 1.53 0.00 2.52
2942 3060 5.252969 TGCATGCAAGGATTATGAGAAAC 57.747 39.130 20.30 0.00 0.00 2.78
2943 3061 4.951715 TGCATGCAAGGATTATGAGAAACT 59.048 37.500 20.30 0.00 0.00 2.66
2944 3062 5.419788 TGCATGCAAGGATTATGAGAAACTT 59.580 36.000 20.30 0.00 0.00 2.66
2945 3063 5.747197 GCATGCAAGGATTATGAGAAACTTG 59.253 40.000 14.21 0.00 38.57 3.16
2946 3064 6.405065 GCATGCAAGGATTATGAGAAACTTGA 60.405 38.462 14.21 0.00 37.98 3.02
2947 3065 6.500684 TGCAAGGATTATGAGAAACTTGAC 57.499 37.500 10.44 4.50 37.98 3.18
2948 3066 5.415701 TGCAAGGATTATGAGAAACTTGACC 59.584 40.000 10.44 0.00 37.98 4.02
2949 3067 5.415701 GCAAGGATTATGAGAAACTTGACCA 59.584 40.000 10.44 0.00 37.98 4.02
2950 3068 6.071952 GCAAGGATTATGAGAAACTTGACCAA 60.072 38.462 10.44 0.00 37.98 3.67
2951 3069 7.363268 GCAAGGATTATGAGAAACTTGACCAAT 60.363 37.037 10.44 0.00 37.98 3.16
2952 3070 7.636150 AGGATTATGAGAAACTTGACCAATG 57.364 36.000 0.00 0.00 0.00 2.82
2953 3071 6.096001 AGGATTATGAGAAACTTGACCAATGC 59.904 38.462 0.00 0.00 0.00 3.56
2954 3072 6.127647 GGATTATGAGAAACTTGACCAATGCA 60.128 38.462 0.00 0.00 0.00 3.96
2955 3073 6.839124 TTATGAGAAACTTGACCAATGCAT 57.161 33.333 0.00 0.00 0.00 3.96
2956 3074 7.936496 TTATGAGAAACTTGACCAATGCATA 57.064 32.000 0.00 0.00 0.00 3.14
2957 3075 8.523915 TTATGAGAAACTTGACCAATGCATAT 57.476 30.769 0.00 0.00 0.00 1.78
2958 3076 9.625747 TTATGAGAAACTTGACCAATGCATATA 57.374 29.630 0.00 0.00 0.00 0.86
2959 3077 7.320443 TGAGAAACTTGACCAATGCATATAC 57.680 36.000 0.00 0.00 0.00 1.47
2960 3078 7.112122 TGAGAAACTTGACCAATGCATATACT 58.888 34.615 0.00 0.00 0.00 2.12
2961 3079 7.611467 TGAGAAACTTGACCAATGCATATACTT 59.389 33.333 0.00 0.00 0.00 2.24
2962 3080 7.989826 AGAAACTTGACCAATGCATATACTTC 58.010 34.615 0.00 0.00 0.00 3.01
2963 3081 7.611467 AGAAACTTGACCAATGCATATACTTCA 59.389 33.333 0.00 0.00 0.00 3.02
2964 3082 7.886629 AACTTGACCAATGCATATACTTCAT 57.113 32.000 0.00 0.00 0.00 2.57
2965 3083 7.268199 ACTTGACCAATGCATATACTTCATG 57.732 36.000 0.00 4.20 0.00 3.07
3008 3126 9.941325 TTAATGCATTGATAAACACAATTCCTT 57.059 25.926 22.27 0.00 36.07 3.36
3010 3128 9.941325 AATGCATTGATAAACACAATTCCTTAA 57.059 25.926 12.09 0.00 36.07 1.85
3011 3129 8.984891 TGCATTGATAAACACAATTCCTTAAG 57.015 30.769 0.00 0.00 36.07 1.85
3012 3130 8.801299 TGCATTGATAAACACAATTCCTTAAGA 58.199 29.630 3.36 0.00 36.07 2.10
3013 3131 9.638239 GCATTGATAAACACAATTCCTTAAGAA 57.362 29.630 3.36 0.00 36.07 2.52
3020 3138 8.628882 AAACACAATTCCTTAAGAAAAACGAG 57.371 30.769 3.36 0.00 38.21 4.18
3021 3139 6.206498 ACACAATTCCTTAAGAAAAACGAGC 58.794 36.000 3.36 0.00 38.21 5.03
3022 3140 5.339611 CACAATTCCTTAAGAAAAACGAGCG 59.660 40.000 3.36 0.00 38.21 5.03
3023 3141 3.531262 TTCCTTAAGAAAAACGAGCGC 57.469 42.857 3.36 0.00 0.00 5.92
3024 3142 2.485903 TCCTTAAGAAAAACGAGCGCA 58.514 42.857 11.47 0.00 0.00 6.09
3025 3143 3.071479 TCCTTAAGAAAAACGAGCGCAT 58.929 40.909 11.47 0.00 0.00 4.73
3026 3144 3.500680 TCCTTAAGAAAAACGAGCGCATT 59.499 39.130 11.47 0.00 0.00 3.56
3027 3145 4.691685 TCCTTAAGAAAAACGAGCGCATTA 59.308 37.500 11.47 0.00 0.00 1.90
3028 3146 5.179742 TCCTTAAGAAAAACGAGCGCATTAA 59.820 36.000 11.47 0.08 0.00 1.40
3029 3147 6.027749 CCTTAAGAAAAACGAGCGCATTAAT 58.972 36.000 11.47 0.00 0.00 1.40
3030 3148 6.526674 CCTTAAGAAAAACGAGCGCATTAATT 59.473 34.615 11.47 0.00 0.00 1.40
3031 3149 5.745653 AAGAAAAACGAGCGCATTAATTG 57.254 34.783 11.47 0.00 0.00 2.32
3032 3150 5.041951 AGAAAAACGAGCGCATTAATTGA 57.958 34.783 11.47 0.00 0.00 2.57
3033 3151 5.088739 AGAAAAACGAGCGCATTAATTGAG 58.911 37.500 11.47 0.00 0.00 3.02
3034 3152 4.419522 AAAACGAGCGCATTAATTGAGT 57.580 36.364 11.47 0.00 0.00 3.41
3035 3153 3.389687 AACGAGCGCATTAATTGAGTG 57.610 42.857 11.47 0.00 0.00 3.51
3036 3154 1.062587 ACGAGCGCATTAATTGAGTGC 59.937 47.619 11.47 2.45 38.96 4.40
3039 3157 3.855689 AGCGCATTAATTGAGTGCTTT 57.144 38.095 11.47 0.00 45.90 3.51
3040 3158 4.178545 AGCGCATTAATTGAGTGCTTTT 57.821 36.364 11.47 0.00 45.90 2.27
3041 3159 5.309323 AGCGCATTAATTGAGTGCTTTTA 57.691 34.783 11.47 0.00 45.90 1.52
3042 3160 5.095490 AGCGCATTAATTGAGTGCTTTTAC 58.905 37.500 11.47 0.00 45.90 2.01
3043 3161 4.856487 GCGCATTAATTGAGTGCTTTTACA 59.144 37.500 0.30 0.00 36.74 2.41
3044 3162 5.344665 GCGCATTAATTGAGTGCTTTTACAA 59.655 36.000 0.30 0.00 36.74 2.41
3045 3163 6.128956 GCGCATTAATTGAGTGCTTTTACAAA 60.129 34.615 0.30 0.00 36.74 2.83
3046 3164 7.219922 CGCATTAATTGAGTGCTTTTACAAAC 58.780 34.615 9.02 0.00 36.74 2.93
3047 3165 7.509797 GCATTAATTGAGTGCTTTTACAAACC 58.490 34.615 4.80 0.00 36.02 3.27
3048 3166 7.170658 GCATTAATTGAGTGCTTTTACAAACCA 59.829 33.333 4.80 0.00 36.02 3.67
3049 3167 9.206870 CATTAATTGAGTGCTTTTACAAACCAT 57.793 29.630 0.00 0.00 0.00 3.55
3050 3168 8.586570 TTAATTGAGTGCTTTTACAAACCATG 57.413 30.769 0.00 0.00 0.00 3.66
3051 3169 4.582701 TGAGTGCTTTTACAAACCATGG 57.417 40.909 11.19 11.19 0.00 3.66
3052 3170 4.211125 TGAGTGCTTTTACAAACCATGGA 58.789 39.130 21.47 0.00 0.00 3.41
3053 3171 4.646945 TGAGTGCTTTTACAAACCATGGAA 59.353 37.500 21.47 0.00 0.00 3.53
3054 3172 5.127845 TGAGTGCTTTTACAAACCATGGAAA 59.872 36.000 21.47 4.95 40.17 3.13
3055 3173 6.173427 AGTGCTTTTACAAACCATGGAAAT 57.827 33.333 21.47 0.50 41.50 2.17
3056 3174 6.591001 AGTGCTTTTACAAACCATGGAAATT 58.409 32.000 21.47 7.57 41.50 1.82
3057 3175 7.731054 AGTGCTTTTACAAACCATGGAAATTA 58.269 30.769 21.47 1.07 41.50 1.40
3058 3176 8.374743 AGTGCTTTTACAAACCATGGAAATTAT 58.625 29.630 21.47 2.12 41.50 1.28
3059 3177 8.998377 GTGCTTTTACAAACCATGGAAATTATT 58.002 29.630 21.47 0.00 41.50 1.40
3060 3178 9.213799 TGCTTTTACAAACCATGGAAATTATTC 57.786 29.630 21.47 0.00 41.50 1.75
3075 3193 7.814264 GAAATTATTCCACCACTCATCATCT 57.186 36.000 0.00 0.00 0.00 2.90
3076 3194 8.908786 GAAATTATTCCACCACTCATCATCTA 57.091 34.615 0.00 0.00 0.00 1.98
3077 3195 8.682936 AAATTATTCCACCACTCATCATCTAC 57.317 34.615 0.00 0.00 0.00 2.59
3078 3196 4.696479 ATTCCACCACTCATCATCTACC 57.304 45.455 0.00 0.00 0.00 3.18
3079 3197 3.404869 TCCACCACTCATCATCTACCT 57.595 47.619 0.00 0.00 0.00 3.08
3080 3198 3.724478 TCCACCACTCATCATCTACCTT 58.276 45.455 0.00 0.00 0.00 3.50
3081 3199 3.452264 TCCACCACTCATCATCTACCTTG 59.548 47.826 0.00 0.00 0.00 3.61
3082 3200 3.432749 CCACCACTCATCATCTACCTTGG 60.433 52.174 0.00 0.00 0.00 3.61
3083 3201 3.198635 CACCACTCATCATCTACCTTGGT 59.801 47.826 0.00 0.00 36.53 3.67
3084 3202 3.846588 ACCACTCATCATCTACCTTGGTT 59.153 43.478 0.00 0.00 31.99 3.67
3085 3203 4.194640 CCACTCATCATCTACCTTGGTTG 58.805 47.826 0.00 0.00 0.00 3.77
3086 3204 4.194640 CACTCATCATCTACCTTGGTTGG 58.805 47.826 0.00 0.00 0.00 3.77
3087 3205 3.846588 ACTCATCATCTACCTTGGTTGGT 59.153 43.478 0.00 0.00 43.66 3.67
3088 3206 4.194640 CTCATCATCTACCTTGGTTGGTG 58.805 47.826 7.94 7.94 41.05 4.17
3089 3207 3.843619 TCATCATCTACCTTGGTTGGTGA 59.156 43.478 16.81 16.81 41.05 4.02
3090 3208 3.981071 TCATCTACCTTGGTTGGTGAG 57.019 47.619 11.95 0.00 41.05 3.51
3091 3209 3.516586 TCATCTACCTTGGTTGGTGAGA 58.483 45.455 11.95 2.97 41.05 3.27
3092 3210 4.104086 TCATCTACCTTGGTTGGTGAGAT 58.896 43.478 11.95 5.00 41.05 2.75
3093 3211 4.536090 TCATCTACCTTGGTTGGTGAGATT 59.464 41.667 11.95 0.00 41.05 2.40
3094 3212 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
3095 3213 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
3096 3214 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
3097 3215 4.670896 ACCTTGGTTGGTGAGATTTTTG 57.329 40.909 0.00 0.00 39.17 2.44
3098 3216 4.285863 ACCTTGGTTGGTGAGATTTTTGA 58.714 39.130 0.00 0.00 39.17 2.69
3099 3217 4.714308 ACCTTGGTTGGTGAGATTTTTGAA 59.286 37.500 0.00 0.00 39.17 2.69
3100 3218 5.366477 ACCTTGGTTGGTGAGATTTTTGAAT 59.634 36.000 0.00 0.00 39.17 2.57
3101 3219 6.553100 ACCTTGGTTGGTGAGATTTTTGAATA 59.447 34.615 0.00 0.00 39.17 1.75
3102 3220 7.092716 CCTTGGTTGGTGAGATTTTTGAATAG 58.907 38.462 0.00 0.00 0.00 1.73
3103 3221 7.039784 CCTTGGTTGGTGAGATTTTTGAATAGA 60.040 37.037 0.00 0.00 0.00 1.98
3104 3222 7.452880 TGGTTGGTGAGATTTTTGAATAGAG 57.547 36.000 0.00 0.00 0.00 2.43
3105 3223 6.071952 TGGTTGGTGAGATTTTTGAATAGAGC 60.072 38.462 0.00 0.00 0.00 4.09
3106 3224 6.325596 GTTGGTGAGATTTTTGAATAGAGCC 58.674 40.000 0.00 0.00 0.00 4.70
3107 3225 5.819991 TGGTGAGATTTTTGAATAGAGCCT 58.180 37.500 0.00 0.00 0.00 4.58
3108 3226 6.957631 TGGTGAGATTTTTGAATAGAGCCTA 58.042 36.000 0.00 0.00 0.00 3.93
3109 3227 6.823689 TGGTGAGATTTTTGAATAGAGCCTAC 59.176 38.462 0.00 0.00 0.00 3.18
3110 3228 6.018669 GGTGAGATTTTTGAATAGAGCCTACG 60.019 42.308 0.00 0.00 0.00 3.51
3111 3229 5.523916 TGAGATTTTTGAATAGAGCCTACGC 59.476 40.000 0.00 0.00 0.00 4.42
3112 3230 4.816925 AGATTTTTGAATAGAGCCTACGCC 59.183 41.667 0.00 0.00 34.57 5.68
3113 3231 3.620427 TTTTGAATAGAGCCTACGCCA 57.380 42.857 0.00 0.00 34.57 5.69
3114 3232 2.890808 TTGAATAGAGCCTACGCCAG 57.109 50.000 0.00 0.00 34.57 4.85
3115 3233 2.067365 TGAATAGAGCCTACGCCAGA 57.933 50.000 0.00 0.00 34.57 3.86
3116 3234 2.384828 TGAATAGAGCCTACGCCAGAA 58.615 47.619 0.00 0.00 34.57 3.02
3117 3235 2.100916 TGAATAGAGCCTACGCCAGAAC 59.899 50.000 0.00 0.00 34.57 3.01
3118 3236 1.776662 ATAGAGCCTACGCCAGAACA 58.223 50.000 0.00 0.00 34.57 3.18
3119 3237 1.552578 TAGAGCCTACGCCAGAACAA 58.447 50.000 0.00 0.00 34.57 2.83
3120 3238 0.905357 AGAGCCTACGCCAGAACAAT 59.095 50.000 0.00 0.00 34.57 2.71
3121 3239 1.279271 AGAGCCTACGCCAGAACAATT 59.721 47.619 0.00 0.00 34.57 2.32
3135 3253 6.365839 CCAGAACAATTGATATGTATCACGC 58.634 40.000 13.59 0.00 42.00 5.34
3141 3259 4.890158 TTGATATGTATCACGCCAGGAT 57.110 40.909 2.31 0.00 42.00 3.24
3146 3264 4.890158 ATGTATCACGCCAGGATGATTA 57.110 40.909 11.03 3.60 39.69 1.75
3147 3265 4.681074 TGTATCACGCCAGGATGATTAA 57.319 40.909 11.03 0.02 39.69 1.40
3148 3266 5.227569 TGTATCACGCCAGGATGATTAAT 57.772 39.130 11.03 0.00 39.69 1.40
3175 3293 2.676342 GGACACACACACTTTTCGTTCT 59.324 45.455 0.00 0.00 0.00 3.01
3194 3312 6.819649 TCGTTCTAACCCTATAAATGTGGTTG 59.180 38.462 3.15 0.00 41.08 3.77
3252 3370 5.904941 TGTTGCTTTCACAATCAAATCACT 58.095 33.333 0.00 0.00 0.00 3.41
3276 3394 5.280654 ACCACATCACTGCAATTCTTTTT 57.719 34.783 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.127548 GCCGATGATTACATATGCCTTGG 59.872 47.826 1.58 0.00 36.82 3.61
94 96 3.298320 GGGGGTACGTAGGGTGTAA 57.702 57.895 0.00 0.00 0.00 2.41
111 114 1.135083 CCTGGCTTATATAGACGCGGG 60.135 57.143 12.47 0.00 32.99 6.13
113 116 1.135083 CCCCTGGCTTATATAGACGCG 60.135 57.143 3.53 3.53 32.99 6.01
143 149 8.135529 CGTATGTGTGAATGAATCTACCTCTAA 58.864 37.037 0.00 0.00 0.00 2.10
156 162 5.111989 ACCTGAAGATCGTATGTGTGAATG 58.888 41.667 0.00 0.00 0.00 2.67
188 194 6.584471 TTATGGATGGGGTACAAAGTACAT 57.416 37.500 9.27 0.00 0.00 2.29
229 240 2.781945 AACGGTAAAACTCGACGTCT 57.218 45.000 14.70 0.00 36.69 4.18
246 257 1.740664 GTTCGGGCCCTCTCGAAAC 60.741 63.158 22.43 10.36 45.12 2.78
247 258 2.660802 GTTCGGGCCCTCTCGAAA 59.339 61.111 22.43 1.21 45.12 3.46
258 269 4.648307 AGACAGTATTTACCTAGGTTCGGG 59.352 45.833 22.11 6.40 0.00 5.14
267 278 7.235812 AGGACAAAGAAGAGACAGTATTTACCT 59.764 37.037 0.00 0.00 0.00 3.08
303 314 0.463295 CGAGCTGGTGATCTTGGCAT 60.463 55.000 0.00 0.00 0.00 4.40
336 347 0.178533 AGCTTGCTGAGGCTGATCTC 59.821 55.000 0.00 0.00 37.41 2.75
337 348 0.178533 GAGCTTGCTGAGGCTGATCT 59.821 55.000 0.00 0.00 39.05 2.75
345 356 3.485431 CGCCACGAGCTTGCTGAG 61.485 66.667 0.00 0.00 40.39 3.35
346 357 3.513768 TTCGCCACGAGCTTGCTGA 62.514 57.895 0.00 0.00 40.39 4.26
349 373 2.568935 GATGTTCGCCACGAGCTTGC 62.569 60.000 0.00 0.00 37.92 4.01
366 390 6.544928 AAACAGAAACTCCAAAGGTTTGAT 57.455 33.333 3.95 0.00 40.55 2.57
395 420 2.029918 CCAACTGAGTTTTAGCAAGCCC 60.030 50.000 0.00 0.00 0.00 5.19
410 435 0.310854 GACTTGGTTTCGGCCAACTG 59.689 55.000 2.24 0.00 42.98 3.16
414 439 0.250295 CTGAGACTTGGTTTCGGCCA 60.250 55.000 2.24 0.00 36.62 5.36
418 443 2.052157 GTCGACTGAGACTTGGTTTCG 58.948 52.381 8.70 0.00 38.09 3.46
448 478 1.851304 TCCCCATGCAAAGATCCAAC 58.149 50.000 0.00 0.00 0.00 3.77
465 495 2.415512 GTGCTTAGTCCAACACGAATCC 59.584 50.000 0.00 0.00 0.00 3.01
470 500 1.732259 GATGGTGCTTAGTCCAACACG 59.268 52.381 3.03 0.00 37.27 4.49
471 501 2.084546 GGATGGTGCTTAGTCCAACAC 58.915 52.381 3.03 0.00 37.27 3.32
583 613 1.555075 AGGGCAGATGTTGTGTACGAT 59.445 47.619 0.00 0.00 0.00 3.73
584 614 0.973632 AGGGCAGATGTTGTGTACGA 59.026 50.000 0.00 0.00 0.00 3.43
585 615 1.359848 GAGGGCAGATGTTGTGTACG 58.640 55.000 0.00 0.00 0.00 3.67
586 616 1.337823 ACGAGGGCAGATGTTGTGTAC 60.338 52.381 0.00 0.00 0.00 2.90
587 617 0.973632 ACGAGGGCAGATGTTGTGTA 59.026 50.000 0.00 0.00 0.00 2.90
588 618 0.320771 GACGAGGGCAGATGTTGTGT 60.321 55.000 0.00 0.00 0.00 3.72
589 619 1.354337 CGACGAGGGCAGATGTTGTG 61.354 60.000 0.00 0.00 0.00 3.33
590 620 1.079819 CGACGAGGGCAGATGTTGT 60.080 57.895 0.00 0.00 0.00 3.32
591 621 0.179100 ATCGACGAGGGCAGATGTTG 60.179 55.000 3.01 0.00 0.00 3.33
592 622 0.537188 AATCGACGAGGGCAGATGTT 59.463 50.000 3.01 0.00 0.00 2.71
593 623 0.179100 CAATCGACGAGGGCAGATGT 60.179 55.000 3.01 0.00 0.00 3.06
594 624 0.179100 ACAATCGACGAGGGCAGATG 60.179 55.000 3.01 0.00 0.00 2.90
595 625 1.338337 CTACAATCGACGAGGGCAGAT 59.662 52.381 3.01 0.00 0.00 2.90
596 626 0.738975 CTACAATCGACGAGGGCAGA 59.261 55.000 3.01 0.00 0.00 4.26
597 627 0.872021 GCTACAATCGACGAGGGCAG 60.872 60.000 3.01 0.00 0.00 4.85
598 628 1.141019 GCTACAATCGACGAGGGCA 59.859 57.895 3.01 0.00 0.00 5.36
599 629 1.141019 TGCTACAATCGACGAGGGC 59.859 57.895 3.01 3.80 0.00 5.19
622 652 0.447801 GATGTTGCATCCGGTGTGAC 59.552 55.000 12.69 8.60 0.00 3.67
643 673 6.179756 ACTACATGCTACAAACATCAATGGA 58.820 36.000 0.00 0.00 0.00 3.41
644 674 6.093909 TGACTACATGCTACAAACATCAATGG 59.906 38.462 0.00 0.00 0.00 3.16
673 703 3.820557 ACAACAACAGATGCTACAACCT 58.179 40.909 0.00 0.00 0.00 3.50
682 712 3.976942 GCTACAAGCAACAACAACAGATG 59.023 43.478 0.00 0.00 41.89 2.90
683 713 4.228912 GCTACAAGCAACAACAACAGAT 57.771 40.909 0.00 0.00 41.89 2.90
708 738 7.167302 CGAACAGTGATTAAAAATGTTGCAAGA 59.833 33.333 0.00 0.00 34.41 3.02
723 753 3.648339 AAAATGCTGCGAACAGTGATT 57.352 38.095 0.00 0.00 46.30 2.57
724 754 3.004629 TGAAAAATGCTGCGAACAGTGAT 59.995 39.130 0.00 0.00 46.30 3.06
726 756 2.730069 TGAAAAATGCTGCGAACAGTG 58.270 42.857 0.00 0.00 46.30 3.66
733 763 2.937591 ACAGTGATGAAAAATGCTGCG 58.062 42.857 0.00 0.00 0.00 5.18
734 764 3.430895 CCAACAGTGATGAAAAATGCTGC 59.569 43.478 1.27 0.00 0.00 5.25
735 765 3.430895 GCCAACAGTGATGAAAAATGCTG 59.569 43.478 1.27 0.00 0.00 4.41
736 766 3.069872 TGCCAACAGTGATGAAAAATGCT 59.930 39.130 1.27 0.00 0.00 3.79
737 767 3.391965 TGCCAACAGTGATGAAAAATGC 58.608 40.909 1.27 0.00 0.00 3.56
738 768 3.430895 GCTGCCAACAGTGATGAAAAATG 59.569 43.478 1.27 0.00 46.30 2.32
739 769 3.069872 TGCTGCCAACAGTGATGAAAAAT 59.930 39.130 1.27 0.00 46.30 1.82
740 770 2.429971 TGCTGCCAACAGTGATGAAAAA 59.570 40.909 1.27 0.00 46.30 1.94
741 771 2.030371 TGCTGCCAACAGTGATGAAAA 58.970 42.857 1.27 0.00 46.30 2.29
742 772 1.689984 TGCTGCCAACAGTGATGAAA 58.310 45.000 1.27 0.00 46.30 2.69
743 773 1.814394 GATGCTGCCAACAGTGATGAA 59.186 47.619 1.27 0.00 46.30 2.57
744 774 1.456296 GATGCTGCCAACAGTGATGA 58.544 50.000 1.27 0.00 46.30 2.92
745 775 0.454600 GGATGCTGCCAACAGTGATG 59.545 55.000 0.00 0.00 46.30 3.07
746 776 0.038599 TGGATGCTGCCAACAGTGAT 59.961 50.000 0.00 0.00 46.30 3.06
747 777 0.607217 CTGGATGCTGCCAACAGTGA 60.607 55.000 0.00 0.00 46.30 3.41
748 778 0.607217 TCTGGATGCTGCCAACAGTG 60.607 55.000 12.21 0.00 46.30 3.66
749 779 0.330604 ATCTGGATGCTGCCAACAGT 59.669 50.000 12.21 1.36 46.30 3.55
751 781 0.038599 ACATCTGGATGCTGCCAACA 59.961 50.000 10.13 0.00 42.39 3.33
752 782 0.454600 CACATCTGGATGCTGCCAAC 59.545 55.000 10.13 0.00 42.39 3.77
753 783 1.317431 GCACATCTGGATGCTGCCAA 61.317 55.000 18.29 0.00 42.39 4.52
754 784 1.751544 GCACATCTGGATGCTGCCA 60.752 57.895 18.29 0.00 42.39 4.92
755 785 3.117372 GCACATCTGGATGCTGCC 58.883 61.111 18.29 0.00 42.39 4.85
773 803 0.179070 TAGTTGTGGTGTTGCGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
815 845 0.905357 AGGCGTGGCTAGAACTCAAT 59.095 50.000 0.00 0.00 0.00 2.57
882 913 2.644676 TGGTGATTGTTTTCCGTGACA 58.355 42.857 0.00 0.00 0.00 3.58
908 939 7.228840 CGATGTGACAAATTGCATTAAAAAGG 58.771 34.615 0.00 0.00 0.00 3.11
920 951 4.218200 TCTTTGGATGCGATGTGACAAATT 59.782 37.500 0.00 0.00 0.00 1.82
921 952 3.758023 TCTTTGGATGCGATGTGACAAAT 59.242 39.130 0.00 0.00 0.00 2.32
948 979 4.702612 ACGTGGCATAACACATGGAAATTA 59.297 37.500 0.00 0.00 41.38 1.40
949 980 3.509575 ACGTGGCATAACACATGGAAATT 59.490 39.130 0.00 0.00 41.38 1.82
950 981 3.088532 ACGTGGCATAACACATGGAAAT 58.911 40.909 0.00 0.00 41.38 2.17
952 983 2.080693 GACGTGGCATAACACATGGAA 58.919 47.619 0.00 0.00 41.38 3.53
956 987 1.075542 CGTGACGTGGCATAACACAT 58.924 50.000 16.40 0.00 41.38 3.21
1066 1113 3.890756 GCCATGGTATGTTGAATGATGGA 59.109 43.478 14.67 0.00 32.20 3.41
1080 1127 3.750155 TCGTGCGACGCCATGGTA 61.750 61.111 18.69 0.00 42.21 3.25
1107 1158 2.636830 CTCATGGACATGGTGAGTTCC 58.363 52.381 11.98 0.00 39.24 3.62
1110 1161 0.986527 TGCTCATGGACATGGTGAGT 59.013 50.000 11.98 0.00 41.04 3.41
1115 1166 1.153309 TCGCTGCTCATGGACATGG 60.153 57.895 11.98 4.79 39.24 3.66
1116 1167 1.759293 CGTCGCTGCTCATGGACATG 61.759 60.000 5.95 5.95 40.09 3.21
1117 1168 1.520120 CGTCGCTGCTCATGGACAT 60.520 57.895 0.00 0.00 0.00 3.06
1118 1169 2.125952 CGTCGCTGCTCATGGACA 60.126 61.111 0.00 0.00 0.00 4.02
1119 1170 1.875813 CTCGTCGCTGCTCATGGAC 60.876 63.158 0.00 0.00 0.00 4.02
1120 1171 1.877576 AACTCGTCGCTGCTCATGGA 61.878 55.000 0.00 0.00 0.00 3.41
1289 1340 3.358076 GAGAGCTTCGTCGGGTGGG 62.358 68.421 0.00 0.00 0.00 4.61
1887 1941 9.888878 GTTTGTATTTTTACCTTGAGTAGAACC 57.111 33.333 0.00 0.00 30.92 3.62
2065 2166 6.575056 CGACCACCATATCCATGATTATCACT 60.575 42.308 0.00 0.00 33.67 3.41
2112 2213 1.566018 CGCCTCCTTTGACACGGTTC 61.566 60.000 0.00 0.00 0.00 3.62
2201 2302 4.142160 ACTGAACCCAGCTTCAAAGAAAAC 60.142 41.667 0.00 0.00 44.16 2.43
2418 2526 7.193311 ACGTACCGTTTGACTGTGAAACATG 62.193 44.000 19.97 13.44 42.13 3.21
2436 2551 0.238817 TGGCGATTTTGCAACGTACC 59.761 50.000 0.00 0.00 36.28 3.34
2505 2620 8.980610 CAAGAAGAAAATGTTGCACATGAATAA 58.019 29.630 0.00 0.00 37.97 1.40
2520 2635 4.119136 CGTTTGGGTTGCAAGAAGAAAAT 58.881 39.130 0.00 0.00 0.00 1.82
2685 2802 6.210584 ACCCGGTGATTTTTGTATGAGAAATT 59.789 34.615 0.00 0.00 0.00 1.82
2720 2837 9.325198 TGATAATACTATAAGTTTGTGCCTGTG 57.675 33.333 0.00 0.00 0.00 3.66
2786 2903 7.690256 AGGGAGTACATAGTTCATCAGTTTTT 58.310 34.615 0.00 0.00 0.00 1.94
2807 2925 2.686119 CTATAAACCGGGAAGGAGGGA 58.314 52.381 6.32 0.00 45.00 4.20
2808 2926 1.697982 CCTATAAACCGGGAAGGAGGG 59.302 57.143 6.32 0.00 45.00 4.30
2809 2927 1.697982 CCCTATAAACCGGGAAGGAGG 59.302 57.143 6.32 6.70 43.44 4.30
2810 2928 1.071857 GCCCTATAAACCGGGAAGGAG 59.928 57.143 6.32 0.00 43.44 3.69
2811 2929 1.134228 GCCCTATAAACCGGGAAGGA 58.866 55.000 6.32 0.00 43.44 3.36
2812 2930 1.137697 AGCCCTATAAACCGGGAAGG 58.862 55.000 6.32 4.57 43.44 3.46
2813 2931 4.286291 AGATAAGCCCTATAAACCGGGAAG 59.714 45.833 6.32 0.00 43.44 3.46
2814 2932 4.237018 AGATAAGCCCTATAAACCGGGAA 58.763 43.478 6.32 0.00 43.44 3.97
2815 2933 3.836562 GAGATAAGCCCTATAAACCGGGA 59.163 47.826 6.32 0.00 43.44 5.14
2816 2934 3.581332 TGAGATAAGCCCTATAAACCGGG 59.419 47.826 6.32 0.00 43.60 5.73
2818 2936 8.842358 TTATTTGAGATAAGCCCTATAAACCG 57.158 34.615 0.00 0.00 0.00 4.44
2825 2943 9.487442 AAACCAAATTATTTGAGATAAGCCCTA 57.513 29.630 18.13 0.00 43.26 3.53
2826 2944 7.978099 AACCAAATTATTTGAGATAAGCCCT 57.022 32.000 18.13 0.00 43.26 5.19
2827 2945 7.710907 GGAAACCAAATTATTTGAGATAAGCCC 59.289 37.037 18.13 5.54 43.26 5.19
2828 2946 8.648557 GGAAACCAAATTATTTGAGATAAGCC 57.351 34.615 18.13 7.04 43.26 4.35
2861 2979 9.912634 GATGGAAAACAATCAAATTGAGACTTA 57.087 29.630 1.10 0.00 42.83 2.24
2862 2980 8.423349 TGATGGAAAACAATCAAATTGAGACTT 58.577 29.630 1.10 0.00 42.83 3.01
2863 2981 7.869429 GTGATGGAAAACAATCAAATTGAGACT 59.131 33.333 1.10 0.00 42.83 3.24
2864 2982 7.652909 TGTGATGGAAAACAATCAAATTGAGAC 59.347 33.333 1.10 0.00 42.83 3.36
2865 2983 7.724287 TGTGATGGAAAACAATCAAATTGAGA 58.276 30.769 1.10 0.00 42.83 3.27
2866 2984 7.949903 TGTGATGGAAAACAATCAAATTGAG 57.050 32.000 1.10 0.00 42.83 3.02
2867 2985 7.095144 GCATGTGATGGAAAACAATCAAATTGA 60.095 33.333 0.00 0.00 42.83 2.57
2868 2986 7.018826 GCATGTGATGGAAAACAATCAAATTG 58.981 34.615 0.00 0.00 45.59 2.32
2869 2987 6.938030 AGCATGTGATGGAAAACAATCAAATT 59.062 30.769 0.00 0.00 0.00 1.82
2870 2988 6.469410 AGCATGTGATGGAAAACAATCAAAT 58.531 32.000 0.00 0.00 0.00 2.32
2871 2989 5.856156 AGCATGTGATGGAAAACAATCAAA 58.144 33.333 0.00 0.00 0.00 2.69
2872 2990 5.010820 TGAGCATGTGATGGAAAACAATCAA 59.989 36.000 0.00 0.00 0.00 2.57
2873 2991 4.523558 TGAGCATGTGATGGAAAACAATCA 59.476 37.500 0.00 0.00 0.00 2.57
2874 2992 5.063180 TGAGCATGTGATGGAAAACAATC 57.937 39.130 0.00 0.00 0.00 2.67
2875 2993 5.471556 TTGAGCATGTGATGGAAAACAAT 57.528 34.783 0.00 0.00 0.00 2.71
2876 2994 4.933505 TTGAGCATGTGATGGAAAACAA 57.066 36.364 0.00 0.00 0.00 2.83
2877 2995 4.933505 TTTGAGCATGTGATGGAAAACA 57.066 36.364 0.00 0.00 0.00 2.83
2878 2996 6.424509 TGAAATTTGAGCATGTGATGGAAAAC 59.575 34.615 0.00 0.00 0.00 2.43
2879 2997 6.522946 TGAAATTTGAGCATGTGATGGAAAA 58.477 32.000 0.00 0.00 0.00 2.29
2880 2998 6.099159 TGAAATTTGAGCATGTGATGGAAA 57.901 33.333 0.00 0.00 0.00 3.13
2881 2999 5.725325 TGAAATTTGAGCATGTGATGGAA 57.275 34.783 0.00 0.00 0.00 3.53
2882 3000 5.336929 CCTTGAAATTTGAGCATGTGATGGA 60.337 40.000 0.00 0.00 0.00 3.41
2883 3001 4.868171 CCTTGAAATTTGAGCATGTGATGG 59.132 41.667 0.00 0.00 0.00 3.51
2884 3002 5.347635 CACCTTGAAATTTGAGCATGTGATG 59.652 40.000 0.00 0.00 0.00 3.07
2885 3003 5.475719 CACCTTGAAATTTGAGCATGTGAT 58.524 37.500 0.00 0.00 0.00 3.06
2886 3004 4.796946 GCACCTTGAAATTTGAGCATGTGA 60.797 41.667 0.00 0.00 0.00 3.58
2887 3005 3.430895 GCACCTTGAAATTTGAGCATGTG 59.569 43.478 0.00 0.58 0.00 3.21
2888 3006 3.069872 TGCACCTTGAAATTTGAGCATGT 59.930 39.130 0.00 0.00 0.00 3.21
2889 3007 3.655486 TGCACCTTGAAATTTGAGCATG 58.345 40.909 0.00 0.00 0.00 4.06
2890 3008 4.546829 ATGCACCTTGAAATTTGAGCAT 57.453 36.364 0.00 0.32 36.71 3.79
2891 3009 4.339872 AATGCACCTTGAAATTTGAGCA 57.660 36.364 0.00 0.00 35.03 4.26
2892 3010 6.973229 ATTAATGCACCTTGAAATTTGAGC 57.027 33.333 0.00 0.00 0.00 4.26
2893 3011 8.537049 TGAATTAATGCACCTTGAAATTTGAG 57.463 30.769 0.00 0.00 0.00 3.02
2894 3012 9.504708 AATGAATTAATGCACCTTGAAATTTGA 57.495 25.926 0.00 0.00 0.00 2.69
2895 3013 9.549509 CAATGAATTAATGCACCTTGAAATTTG 57.450 29.630 0.00 0.00 0.00 2.32
2896 3014 8.238631 GCAATGAATTAATGCACCTTGAAATTT 58.761 29.630 12.24 0.00 39.81 1.82
2897 3015 7.390996 TGCAATGAATTAATGCACCTTGAAATT 59.609 29.630 12.24 0.00 44.52 1.82
2898 3016 6.879993 TGCAATGAATTAATGCACCTTGAAAT 59.120 30.769 12.24 0.00 44.52 2.17
2899 3017 6.228995 TGCAATGAATTAATGCACCTTGAAA 58.771 32.000 12.24 0.00 44.52 2.69
2900 3018 5.791666 TGCAATGAATTAATGCACCTTGAA 58.208 33.333 12.24 1.11 44.52 2.69
2901 3019 5.402997 TGCAATGAATTAATGCACCTTGA 57.597 34.783 12.24 0.00 44.52 3.02
2918 3036 6.097839 AGTTTCTCATAATCCTTGCATGCAAT 59.902 34.615 31.96 20.06 35.20 3.56
2919 3037 5.419788 AGTTTCTCATAATCCTTGCATGCAA 59.580 36.000 30.12 30.12 0.00 4.08
2920 3038 4.951715 AGTTTCTCATAATCCTTGCATGCA 59.048 37.500 18.46 18.46 0.00 3.96
2921 3039 5.511234 AGTTTCTCATAATCCTTGCATGC 57.489 39.130 11.82 11.82 0.00 4.06
2922 3040 6.971184 GTCAAGTTTCTCATAATCCTTGCATG 59.029 38.462 0.00 0.00 31.64 4.06
2923 3041 6.096001 GGTCAAGTTTCTCATAATCCTTGCAT 59.904 38.462 0.00 0.00 31.64 3.96
2924 3042 5.415701 GGTCAAGTTTCTCATAATCCTTGCA 59.584 40.000 0.00 0.00 31.64 4.08
2925 3043 5.415701 TGGTCAAGTTTCTCATAATCCTTGC 59.584 40.000 0.00 0.00 31.64 4.01
2926 3044 7.452880 TTGGTCAAGTTTCTCATAATCCTTG 57.547 36.000 0.00 0.00 0.00 3.61
2927 3045 7.363268 GCATTGGTCAAGTTTCTCATAATCCTT 60.363 37.037 0.00 0.00 0.00 3.36
2928 3046 6.096001 GCATTGGTCAAGTTTCTCATAATCCT 59.904 38.462 0.00 0.00 0.00 3.24
2929 3047 6.127647 TGCATTGGTCAAGTTTCTCATAATCC 60.128 38.462 0.00 0.00 0.00 3.01
2930 3048 6.855836 TGCATTGGTCAAGTTTCTCATAATC 58.144 36.000 0.00 0.00 0.00 1.75
2931 3049 6.839124 TGCATTGGTCAAGTTTCTCATAAT 57.161 33.333 0.00 0.00 0.00 1.28
2932 3050 6.839124 ATGCATTGGTCAAGTTTCTCATAA 57.161 33.333 0.00 0.00 0.00 1.90
2933 3051 9.056005 GTATATGCATTGGTCAAGTTTCTCATA 57.944 33.333 3.54 0.00 0.00 2.15
2934 3052 7.776969 AGTATATGCATTGGTCAAGTTTCTCAT 59.223 33.333 3.54 0.00 0.00 2.90
2935 3053 7.112122 AGTATATGCATTGGTCAAGTTTCTCA 58.888 34.615 3.54 0.00 0.00 3.27
2936 3054 7.559590 AGTATATGCATTGGTCAAGTTTCTC 57.440 36.000 3.54 0.00 0.00 2.87
2937 3055 7.611467 TGAAGTATATGCATTGGTCAAGTTTCT 59.389 33.333 3.54 0.00 0.00 2.52
2938 3056 7.761409 TGAAGTATATGCATTGGTCAAGTTTC 58.239 34.615 3.54 0.00 0.00 2.78
2939 3057 7.701539 TGAAGTATATGCATTGGTCAAGTTT 57.298 32.000 3.54 0.00 0.00 2.66
2940 3058 7.709947 CATGAAGTATATGCATTGGTCAAGTT 58.290 34.615 3.54 0.00 0.00 2.66
2941 3059 7.268199 CATGAAGTATATGCATTGGTCAAGT 57.732 36.000 3.54 0.00 0.00 3.16
2982 3100 9.941325 AAGGAATTGTGTTTATCAATGCATTAA 57.059 25.926 12.53 0.00 34.45 1.40
2984 3102 9.941325 TTAAGGAATTGTGTTTATCAATGCATT 57.059 25.926 5.99 5.99 38.10 3.56
2985 3103 9.590451 CTTAAGGAATTGTGTTTATCAATGCAT 57.410 29.630 0.00 0.00 35.95 3.96
2986 3104 8.801299 TCTTAAGGAATTGTGTTTATCAATGCA 58.199 29.630 1.85 0.00 35.95 3.96
2987 3105 9.638239 TTCTTAAGGAATTGTGTTTATCAATGC 57.362 29.630 1.85 0.00 35.95 3.56
2994 3112 9.724839 CTCGTTTTTCTTAAGGAATTGTGTTTA 57.275 29.630 1.85 0.00 33.53 2.01
2995 3113 7.222031 GCTCGTTTTTCTTAAGGAATTGTGTTT 59.778 33.333 1.85 0.00 33.53 2.83
2996 3114 6.695713 GCTCGTTTTTCTTAAGGAATTGTGTT 59.304 34.615 1.85 0.00 33.53 3.32
2997 3115 6.206498 GCTCGTTTTTCTTAAGGAATTGTGT 58.794 36.000 1.85 0.00 33.53 3.72
2998 3116 5.339611 CGCTCGTTTTTCTTAAGGAATTGTG 59.660 40.000 1.85 0.00 33.53 3.33
2999 3117 5.449304 CGCTCGTTTTTCTTAAGGAATTGT 58.551 37.500 1.85 0.00 33.53 2.71
3000 3118 4.320953 GCGCTCGTTTTTCTTAAGGAATTG 59.679 41.667 0.00 0.00 33.53 2.32
3001 3119 4.023536 TGCGCTCGTTTTTCTTAAGGAATT 60.024 37.500 9.73 0.00 33.53 2.17
3002 3120 3.500680 TGCGCTCGTTTTTCTTAAGGAAT 59.499 39.130 9.73 0.00 33.53 3.01
3003 3121 2.873472 TGCGCTCGTTTTTCTTAAGGAA 59.127 40.909 9.73 0.00 0.00 3.36
3004 3122 2.485903 TGCGCTCGTTTTTCTTAAGGA 58.514 42.857 9.73 0.00 0.00 3.36
3005 3123 2.961522 TGCGCTCGTTTTTCTTAAGG 57.038 45.000 9.73 0.00 0.00 2.69
3006 3124 7.270365 TCAATTAATGCGCTCGTTTTTCTTAAG 59.730 33.333 9.73 0.00 0.00 1.85
3007 3125 7.078851 TCAATTAATGCGCTCGTTTTTCTTAA 58.921 30.769 9.73 0.00 0.00 1.85
3008 3126 6.604012 TCAATTAATGCGCTCGTTTTTCTTA 58.396 32.000 9.73 0.00 0.00 2.10
3009 3127 5.457140 TCAATTAATGCGCTCGTTTTTCTT 58.543 33.333 9.73 0.00 0.00 2.52
3010 3128 5.041951 TCAATTAATGCGCTCGTTTTTCT 57.958 34.783 9.73 0.00 0.00 2.52
3011 3129 4.851558 ACTCAATTAATGCGCTCGTTTTTC 59.148 37.500 9.73 0.00 0.00 2.29
3012 3130 4.616802 CACTCAATTAATGCGCTCGTTTTT 59.383 37.500 9.73 0.00 0.00 1.94
3013 3131 4.158384 CACTCAATTAATGCGCTCGTTTT 58.842 39.130 9.73 0.00 0.00 2.43
3014 3132 3.747193 CACTCAATTAATGCGCTCGTTT 58.253 40.909 9.73 0.00 0.00 3.60
3015 3133 2.476185 GCACTCAATTAATGCGCTCGTT 60.476 45.455 9.73 3.59 0.00 3.85
3016 3134 1.062587 GCACTCAATTAATGCGCTCGT 59.937 47.619 9.73 0.00 0.00 4.18
3017 3135 1.328680 AGCACTCAATTAATGCGCTCG 59.671 47.619 9.73 0.00 44.25 5.03
3018 3136 3.411415 AAGCACTCAATTAATGCGCTC 57.589 42.857 9.73 0.00 44.25 5.03
3019 3137 3.855689 AAAGCACTCAATTAATGCGCT 57.144 38.095 9.73 0.00 44.25 5.92
3020 3138 4.856487 TGTAAAAGCACTCAATTAATGCGC 59.144 37.500 0.00 0.00 44.25 6.09
3021 3139 6.926280 TTGTAAAAGCACTCAATTAATGCG 57.074 33.333 0.00 0.00 44.25 4.73
3022 3140 7.170658 TGGTTTGTAAAAGCACTCAATTAATGC 59.829 33.333 0.73 0.60 39.74 3.56
3023 3141 8.586570 TGGTTTGTAAAAGCACTCAATTAATG 57.413 30.769 0.73 0.00 0.00 1.90
3024 3142 9.206870 CATGGTTTGTAAAAGCACTCAATTAAT 57.793 29.630 6.75 0.00 0.00 1.40
3025 3143 7.655328 CCATGGTTTGTAAAAGCACTCAATTAA 59.345 33.333 2.57 0.00 0.00 1.40
3026 3144 7.014711 TCCATGGTTTGTAAAAGCACTCAATTA 59.985 33.333 12.58 0.00 0.00 1.40
3027 3145 5.990996 CCATGGTTTGTAAAAGCACTCAATT 59.009 36.000 2.57 0.00 0.00 2.32
3028 3146 5.304101 TCCATGGTTTGTAAAAGCACTCAAT 59.696 36.000 12.58 0.00 0.00 2.57
3029 3147 4.646945 TCCATGGTTTGTAAAAGCACTCAA 59.353 37.500 12.58 0.00 0.00 3.02
3030 3148 4.211125 TCCATGGTTTGTAAAAGCACTCA 58.789 39.130 12.58 0.00 0.00 3.41
3031 3149 4.846779 TCCATGGTTTGTAAAAGCACTC 57.153 40.909 12.58 0.00 0.00 3.51
3032 3150 5.606348 TTTCCATGGTTTGTAAAAGCACT 57.394 34.783 12.58 0.00 0.00 4.40
3033 3151 6.859420 AATTTCCATGGTTTGTAAAAGCAC 57.141 33.333 12.58 0.00 0.00 4.40
3034 3152 9.213799 GAATAATTTCCATGGTTTGTAAAAGCA 57.786 29.630 12.58 7.03 0.00 3.91
3051 3169 7.814264 AGATGATGAGTGGTGGAATAATTTC 57.186 36.000 0.00 0.00 0.00 2.17
3052 3170 7.721399 GGTAGATGATGAGTGGTGGAATAATTT 59.279 37.037 0.00 0.00 0.00 1.82
3053 3171 7.072961 AGGTAGATGATGAGTGGTGGAATAATT 59.927 37.037 0.00 0.00 0.00 1.40
3054 3172 6.560304 AGGTAGATGATGAGTGGTGGAATAAT 59.440 38.462 0.00 0.00 0.00 1.28
3055 3173 5.905331 AGGTAGATGATGAGTGGTGGAATAA 59.095 40.000 0.00 0.00 0.00 1.40
3056 3174 5.467738 AGGTAGATGATGAGTGGTGGAATA 58.532 41.667 0.00 0.00 0.00 1.75
3057 3175 4.302067 AGGTAGATGATGAGTGGTGGAAT 58.698 43.478 0.00 0.00 0.00 3.01
3058 3176 3.724478 AGGTAGATGATGAGTGGTGGAA 58.276 45.455 0.00 0.00 0.00 3.53
3059 3177 3.404869 AGGTAGATGATGAGTGGTGGA 57.595 47.619 0.00 0.00 0.00 4.02
3060 3178 3.432749 CCAAGGTAGATGATGAGTGGTGG 60.433 52.174 0.00 0.00 0.00 4.61
3061 3179 3.198635 ACCAAGGTAGATGATGAGTGGTG 59.801 47.826 0.00 0.00 36.77 4.17
3062 3180 3.454858 ACCAAGGTAGATGATGAGTGGT 58.545 45.455 0.00 0.00 33.31 4.16
3063 3181 4.194640 CAACCAAGGTAGATGATGAGTGG 58.805 47.826 0.00 0.00 0.00 4.00
3064 3182 4.194640 CCAACCAAGGTAGATGATGAGTG 58.805 47.826 0.00 0.00 0.00 3.51
3065 3183 3.846588 ACCAACCAAGGTAGATGATGAGT 59.153 43.478 0.00 0.00 40.98 3.41
3066 3184 4.080919 TCACCAACCAAGGTAGATGATGAG 60.081 45.833 0.00 0.00 40.77 2.90
3067 3185 3.843619 TCACCAACCAAGGTAGATGATGA 59.156 43.478 0.00 0.00 40.77 2.92
3068 3186 4.080919 TCTCACCAACCAAGGTAGATGATG 60.081 45.833 0.00 0.00 40.77 3.07
3069 3187 4.104086 TCTCACCAACCAAGGTAGATGAT 58.896 43.478 0.00 0.00 40.77 2.45
3070 3188 3.516586 TCTCACCAACCAAGGTAGATGA 58.483 45.455 0.00 0.00 40.77 2.92
3071 3189 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
3072 3190 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
3073 3191 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
3074 3192 5.534654 TCAAAAATCTCACCAACCAAGGTAG 59.465 40.000 0.00 0.00 40.77 3.18
3075 3193 5.450453 TCAAAAATCTCACCAACCAAGGTA 58.550 37.500 0.00 0.00 40.77 3.08
3076 3194 4.285863 TCAAAAATCTCACCAACCAAGGT 58.714 39.130 0.00 0.00 44.48 3.50
3077 3195 4.935352 TCAAAAATCTCACCAACCAAGG 57.065 40.909 0.00 0.00 0.00 3.61
3078 3196 7.885297 TCTATTCAAAAATCTCACCAACCAAG 58.115 34.615 0.00 0.00 0.00 3.61
3079 3197 7.523709 GCTCTATTCAAAAATCTCACCAACCAA 60.524 37.037 0.00 0.00 0.00 3.67
3080 3198 6.071952 GCTCTATTCAAAAATCTCACCAACCA 60.072 38.462 0.00 0.00 0.00 3.67
3081 3199 6.325596 GCTCTATTCAAAAATCTCACCAACC 58.674 40.000 0.00 0.00 0.00 3.77
3082 3200 6.151817 AGGCTCTATTCAAAAATCTCACCAAC 59.848 38.462 0.00 0.00 0.00 3.77
3083 3201 6.248433 AGGCTCTATTCAAAAATCTCACCAA 58.752 36.000 0.00 0.00 0.00 3.67
3084 3202 5.819991 AGGCTCTATTCAAAAATCTCACCA 58.180 37.500 0.00 0.00 0.00 4.17
3085 3203 6.018669 CGTAGGCTCTATTCAAAAATCTCACC 60.019 42.308 0.00 0.00 0.00 4.02
3086 3204 6.510317 GCGTAGGCTCTATTCAAAAATCTCAC 60.510 42.308 0.00 0.00 35.83 3.51
3087 3205 5.523916 GCGTAGGCTCTATTCAAAAATCTCA 59.476 40.000 0.00 0.00 35.83 3.27
3088 3206 5.980025 GCGTAGGCTCTATTCAAAAATCTC 58.020 41.667 0.00 0.00 35.83 2.75
3089 3207 5.993106 GCGTAGGCTCTATTCAAAAATCT 57.007 39.130 0.00 0.00 35.83 2.40
3105 3223 4.816385 ACATATCAATTGTTCTGGCGTAGG 59.184 41.667 5.13 0.00 0.00 3.18
3106 3224 5.991328 ACATATCAATTGTTCTGGCGTAG 57.009 39.130 5.13 0.00 0.00 3.51
3107 3225 7.170828 GTGATACATATCAATTGTTCTGGCGTA 59.829 37.037 5.13 0.70 43.65 4.42
3108 3226 6.017934 GTGATACATATCAATTGTTCTGGCGT 60.018 38.462 5.13 0.00 43.65 5.68
3109 3227 6.365839 GTGATACATATCAATTGTTCTGGCG 58.634 40.000 5.13 0.00 43.65 5.69
3110 3228 6.365839 CGTGATACATATCAATTGTTCTGGC 58.634 40.000 5.13 0.00 43.65 4.85
3111 3229 6.365839 GCGTGATACATATCAATTGTTCTGG 58.634 40.000 5.13 0.00 43.65 3.86
3112 3230 6.018016 TGGCGTGATACATATCAATTGTTCTG 60.018 38.462 5.13 2.99 43.65 3.02
3113 3231 6.054941 TGGCGTGATACATATCAATTGTTCT 58.945 36.000 5.13 0.00 43.65 3.01
3114 3232 6.299023 TGGCGTGATACATATCAATTGTTC 57.701 37.500 5.13 0.00 43.65 3.18
3115 3233 5.239306 CCTGGCGTGATACATATCAATTGTT 59.761 40.000 5.13 0.00 43.65 2.83
3116 3234 4.756642 CCTGGCGTGATACATATCAATTGT 59.243 41.667 5.13 0.00 43.65 2.71
3117 3235 4.996758 TCCTGGCGTGATACATATCAATTG 59.003 41.667 3.15 0.00 43.65 2.32
3118 3236 5.227569 TCCTGGCGTGATACATATCAATT 57.772 39.130 3.15 0.00 43.65 2.32
3119 3237 4.890158 TCCTGGCGTGATACATATCAAT 57.110 40.909 3.15 0.00 43.65 2.57
3120 3238 4.283212 TCATCCTGGCGTGATACATATCAA 59.717 41.667 3.15 0.00 43.65 2.57
3121 3239 3.831911 TCATCCTGGCGTGATACATATCA 59.168 43.478 0.00 0.00 40.19 2.15
3135 3253 4.141413 TGTCCACCTCATTAATCATCCTGG 60.141 45.833 0.00 0.00 0.00 4.45
3141 3259 4.202409 TGTGTGTGTCCACCTCATTAATCA 60.202 41.667 0.00 0.00 41.09 2.57
3146 3264 1.490490 AGTGTGTGTGTCCACCTCATT 59.510 47.619 0.00 0.00 41.09 2.57
3147 3265 1.131638 AGTGTGTGTGTCCACCTCAT 58.868 50.000 0.00 0.00 41.09 2.90
3148 3266 0.908910 AAGTGTGTGTGTCCACCTCA 59.091 50.000 0.00 0.00 41.09 3.86
3175 3293 5.253330 TGGTCCAACCACATTTATAGGGTTA 59.747 40.000 0.00 0.00 44.79 2.85
3194 3312 2.042464 TCTAGGCATGTCATCTGGTCC 58.958 52.381 0.00 0.00 0.00 4.46
3202 3320 6.899089 TGGATAGAAAAATCTAGGCATGTCA 58.101 36.000 0.00 0.00 0.00 3.58
3252 3370 6.403866 AAAAGAATTGCAGTGATGTGGTTA 57.596 33.333 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.