>input_sequence_55597
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------------------------------------------------------------------------------AT
GCATTCATTGTCCAGA-----AGGTCAACCTTTCACCTC---TATATGAGAACGGAGCTCAACAAAGGCCTTTCCATCAT
TCAACATAC----CATGGCGTCGCACGACCAAGAAGAGGAACTCACCATGTCCATGAGCAGCGACGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACAACCACTGCTTCGCCTTCGTCAAGTCCATGGCGCTCGCGGCTGCCACCGACCTGCGCATCGCCGA
CGCCATCCACCTCAGGGGCGGCGCTGCCACCTTGTCTGATCTTGCGGCCGAGACAGGGACCCACCCGACGAAGCTCTCCC
ACCTCCGGCGGCTCATGCGCGTGCTCACCACCTCTGGCGTCTTCTCCGCCGACGTCAAGGCTAGCGGCGGCGACGCCGTG
TACAAGCTCACCCGGGTCTCTCGCCTCCTCGTGGGAGCTGGGGGCGAGGACTCGCGCCGCCGTGACCTGTCCCCGATGGT
GGGCGTGTTTGTCAACCCGGTCGCCGTCACCGCTCTCTTCAGCATACGCGAGTGGTTCATCGACGAGACGAGCGCCGCCT
---CGTCGCTCTTCGAGGTGGCGCACGGCTGTACTCGGTGGGAGATGATAGCAAAGGACGCAGGCGACGACCGCGTGTTC
AACGCCGGCATGGTAGCGGACAGCTGCCTCAGCATGGAGATCCTACTAAGAGAGTGCAGCGGCGTCTTTGGGTCCGTGGG
CAGCTCACTGGTCGACGTCGGCGGCGCCCATGGCACCGCTGCCGCGGCGGTCGCCAAGGCGTTCCCGCACGTCAAGTGCA
GCGTACTGGACCTCCCTCTCGTCGTCGCCGGGGCTCCTGCCGTTGACAATTTAACCTTCATCGCCGGCGACATGTTTGAG
TACATCCCGCCGGCGGACACGGTTCTACTCAAGGTAAAAATACAAAC---------------------------------
-------AGCAT-AGCCCATTTCACTATAACAAT----ACTGTGGGTTTATATAAG--TATATATTTTTGTATCAGTGGA
TTTTGCATGATTGGCCGGACGAAGATTGCATCAAGATACTCCGCCAGTGCAAGAAAGCCATCCCAACAAGGGACGCCGGA
GGGAAAGTGATAATCATGGATATGGTGGTCGGATCTGCGGTGCCGCAGCAGGGAACCGTGTCAAAGGAGGCGGAAGTTTT
GTTCGATGTCTTCATGATGTACATCGACGGGATCCAGCGAGAGGAGCATGAGTGGAGCAAGGTTTTCTTTGAAGCTGGGT
TCAGTGACTACAAGATTACACCGGTGACGGGAATTCGCTCAATTATTGAAGTCTACCCTTAA------------------
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---------------------------------------
>chr2D_1_TraesCS2D01G093900
ACGTACTCAAGATGGAATCTTCCAAAGATTTGGCGCACACTCCAAGGCAT-ATGTAATCATCGGCATGTTTTATCCCCTG
ATGTAACCGACCTAGTTAC-ACCCTACGTACCCCCCGCGTCTATATAAGCCAGGGGGTTTAGA---CCTTAGAGGTAGAT
TCATTCACACATACGATCTTCAGGTAGATCAACATGTACTTTGTACCCCATCCATAATCAATACAATACAA-----GCAA
GACGTCGAGTTTTACCGTTTCGAGAGGGCCCGAACCTAGGTAAATACTGTCTCTTCTTTGTCCTGTTACCATCATGCCAA
GATCACCAGCTCGGGACCCTCTACTCGAGATCAGCCT-------------CAGCAAGCTCGTGGCGAACATCAAACCTTT
GGAGTTTCTG-TTTTTTACGGGCTTGCTAAAACTCAGTTGGCCGAAACCA-----AGTCTCAGTCGACTGCATAGCTGTT
GGATCTTTGCATGGGGATTCGTGTTGGACTAAGCACCATCCAACATCCCTCACAACATTCTTTCCCATCGTTTGCAACAT
GCCTTTCTACCGGTTGCAGCATCCATCATTGCTGGTTGTAGCATGTCATCTCATCGTACACAACATCTGCCCTCGTCGAT
TGTAGCACACCGTCACACCGGATGCAACATCTTCCATTGATGTTTGTAGCATGTAGTCACACAGGTTGTAGCATCTGTTG
TTGTTGCTTGTAGCACTTCTTGCAACATTTTTAATCACTGTTCGCAGCATTTTTCATCACTGTTGGCAGCATCCAGATGT
GCTGCTCGCAACACCACAACTACGCTGATGTCAGTCTACTAACGATTGAGTTCTAGCCACGCCTGTTTTTTTAATGTCTG
CCTGCAAGTCAAAGGCTTTCTCCATC-AATGTTGTCACGGAAAACAATCACCATCTTGCCTTTTTAATGCAATTTGTCAC
ATCGCATCCAAAGACTTTTAATTTCCA----TGTGTTATGCCACG-TCACGGTTAGCCGCCGGAGAGCAATC---TTGAT
GCATTCATTGTCCAGA-----AGGTCAACCTTTCACCTC---TATATGAGAACGGAGCTCAACAAAGGCCTTTCCATCAT
TCAACATAC----CATGGCGTCGCACGACCAAGAAGAGGAACTCACCATGTCCATGAGCAGCGACGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACAACCACTGCTTCGCCTTCGTCAAGTCCATGGCGCTCGCGGCTGCCACCGACCTGCGCATCGCCGA
CGCCATCCACCTCAGGGGCGGCGCTGCCACCTTGTCTGATCTTGCGGCCGAGACAGGGACCCACCCGACGAAGCTCTCCC
ACCTCCGGCGGCTCATGCGCGTGCTCACCACCTCTGGCGTCTTCTCCGCCGACGTCAAGGCTAGCGGCGGCGACGCCGTG
TACAAGCTCACCCGGGTCTCTCGCCTCCTCGTGGGAGCTGGGGGCGAGGACTCGCGCCGCCGTGACCTGTCCCCGATGGT
GGGCGTGTTTGTCAACCCGGTCGCCGTCACCGCTCTCTTCAGCATACGCGAGTGGTTCATCGACGAGACGAGCGCCGCCT
---CGTCGCTCTTCGAGGTGGCGCACGGCTGTACTCGGTGGGAGATGATAGCAAAGGACGCAGGCGACGACCGCGTGTTC
AACGCCGGCATGGTAGCGGACAGCTGCCTCAGCATGGAGATCCTACTAAGAGAGTGCAGCGGCGTCTTTGGGTCCGTGGG
CAGCTCACTGGTCGACGTCGGCGGCGCCCATGGCACCGCTGCCGCGGCGGTCGCCAAGGCGTTCCCGCACGTCAAGTGCA
GCGTACTGGACCTCCCTCTCGTCGTCGCCGGGGCTCCTGCCGTTGACAATTTAACCTTCATCGCCGGCGACATGTTTGAG
TACATCCCGCCGGCGGACACGGTTCTACTCAAGGTAAAAATACAAAC---------------------------------
-------AGCAT-AGCCCATTTCACTATAACAAT----ACTGTGGGTTTATATAAG--TATATATTTTTGTATCAGTGGA
TTTTGCATGATTGGCCGGACGAAGATTGCATCAAGATACTCCGCCAGTGCAAGAAAGCCATCCCAACAAGGGACGCCGGA
GGGAAAGTGATAATCATGGATATGGTGGTCGGATCTGCGGTGCCGCAGCAGGGAACCGTGTCAAAGGAGGCGGAAGTTTT
GTTCGATGTCTTCATGATGTACATCGACGGGATCCAGCGAGAGGAGCATGAGTGGAGCAAGGTTTTCTTTGAAGCTGGGT
TCAGTGACTACAAGATTACACCGGTGACGGGAATTCGCTCAATTATTGAAGTCTACCCTTAAATACAGTACAAATCTTCA
TAATTCATGTTATGGATTTGAATGCAATGTTGTCTGCAATTGGTATCTTTATAATCTTATCATTATCACTTAAGTAAAAT
GAGT-------TGACTAACTCTTCCTCTATCCTTGCAAAAAAAAACA-------TGTTTCACAGTCAAACGGTACGTTGC
AAAATCGCCATGCTTTTAAGCTATAGATTGTGTATGCCACTGAGGAATTTACAACATCTTTATTCATGTGCAACA--TTT
TCTTCTTGCAACCCAAACGAATATGAGTCTTAACTTCAATTTTCACATGTTTATAGAACATCACATTTCTAACATACCAT
ATTCTTTTGAGAAATTTTTATAAACACTTCAAACGTGGTTTCCATGAAATTTTAAGTGTATTTGCTTTTCACTGGATACT
TAATTTCTCATACAAAAATCACCGGGTTCAGATCCTCACAGGCACAAACTTATAGTATTATCATTATTATTCTTAAAAAA
ATCATCTATTACCCATGGTTAAA-AAAACTGATGAACTATGTACTCCCTCCTTCCCGGTTTATAGGGCTTATCTCAAATA
ATTTGGTTTCCCATTTTATAAGTCTCAATTTGATTGTTTTCCATCACATGCTCAAATTTCAAGGTGCATTAATTCATTGC
ATGCAAGGATTATGAGAAACTTGACCAATGCATATACTTCATGCATGCATGCATTGCAATTAATGCATTGATAAACACAA
TTCCTTAAGAAAAACGAGCGCATTAATTGAGTGCTTTTACAAACCATGGAAATTATTCCACCACTCATCATCTACCTTGG
TTGGTGAGATTTTTGAATAGAGCCTACGCCAGAACAATTGATATGTATCACGCCAGGATGATTAATGAGGTGGACACACA
CACTTTTCGTTCTAACCCTATAAATGTGGTTGGACCAGATGACATGCCTAGATTTTTCTATCCAATTGTTGCTTTCACAA
TCAAATCACTAACCACATCACTGCAATTCTTTTTTTTTC
>chr2B_1
ACGTACTCAAGATGGAATCTTCCAAAGATCTGGCGCACACTGCAAGGCATAATGTAATCATCGGCATGTTTTATCCCCTC
ATGTAACCGACCTAGGTGTAACCCTACGTACCCTCGGCGTCTATATAAGCCGAGGGGTTTAGCCGGCCATAGAGGTAGAT
TTATTCACA-ATACGATCTTCAGGTAGATCAACTTGTACTTTGTACCCCATCCATAATCAATACAATACAATACAAGCAG
GACGTCGAGTTTTACCTCTTCGAGAGGGTCCGAACCTGGGTAAATACTGTTTCTTGTTTGTTCTGTTACCATCGTGCCAA
GATCACCAGCTCGGGACCCTCTACTCAGGATCAGCTGGATTCAACTCCGCCAACAAGCTCGTGGCGAACGTCGAATCTTT
GAAGTTTCTGTTTTTTTACTGGCTTGCTAAAACTTAGTCGGCAGAGATTTTACCGAGTCTCAGTCGACTGCATAGCTATT
GGATCTTTGCATGGAGATTAATGTTGGACTAAGCACCATCCAACATCCCTCACAACATTCTTTCCCATTGTTTGCAACAT
GCCTTTCTACCGGTTGCAGCATCCATGATTGCTGGTTGTAGCATGTCATCTC-----------------CCCTCGTCGAT
TGTAGCACATCATCACACCGGATGCAACATCTGGCATTGATGTTTGTAGCATGTAGTCACACGGGTTGTAGTGTCTGTTG
TCGTTGCTTGTAGCACTCCTTGCAACATTTTTCGTTACTGTTT----------------------GCAGCATCCAGCCGT
GCCGCTCGCAACACCACAACTACGCTGATGTCAGTCTACTAACGGTTGAGTTCTAGACACGCCTGCTTTTTTAATGTCTG
CCTGCAAGTCAAAGGCTTTCTCCATCCAATGTCGTCACGGAAAACAATCAGCATCTTG-CTTTTTAATGCTGTTTGTCAC
ATCGCATCCAAAGACTTTATCTATCCCTTTGTGTGTTATGTCACG-CCACGGATAGCCGCCGGAGAGCAATC---TTGAT
GCATTCGTTGTCCAGA-----AGGTCAACCTTTCAGCTCTACTATATGAGAACGGAGCTCAACAAAGGCCTTCCCATCAT
TCGACACAC----CATGGCGTCGCACGACCAAGAAGACGAGCTCG------CCATGAGCAGCGACGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACAACCACTGCTTCGCCTTCGTCAAGTCCATGGCGCTCGCAGCTGCCACCGACCTGCGCATCGCCGA
CGCCATCCACCTCAGGGGCGGCGCTGCCACCTTGTCTGATCTTGCGGCCGAGACAGGGATCCACCCGACGAAGCTCTCCC
ACCTCCGGCGGCTCATGCGCGTGCTCACCACCTCTGGCGTCTTCTCCGCCGACGTCAAGGCTAGCGGCGGCGACGCCGTG
TTTAAGCTCACCCGGGTCTCTCGCCTCCTCGTGGGAGCTGGGGGCGAGCACTCGCGCCGCCGTGACCTGTCCCCGATGGT
GGGCGTGTTTGTCAACCCGGTCGCCGTCACCGCTCTCTTCAGCATACGCGAGTGGTTCACCGACGAGACGAGCGCCGCCT
---CGTCGCTCTTCGAGGTGGCGCACGGCTGTACTCGGTGGGAGATGATAGCAAAGGATGCAGGCGATGACCGCGTGTTC
AACGCCGGCATGGCAGCGGACAGCTGCCTCAGCATGGAAATCCTACTAAGAGAGTGCAGCGGTGTCTTTGGGTCCGTGGG
CAGCTCACTGGTCGACGTCGGTGGCGCCCATGGCACGGCTGCCATGGCGATCGCCAAGGCGTTCCCACACGTCAAGTGCA
GCGTACTGGACCTCCCTCTCGTCGTCGCCGGGGCTCCTGCCGTTGACAATTTAACCTTCATCGCCGGCGACATGTTTGAG
TACATCCCGCCGGCAGACACCGTTCTACTCAAGGTAAAAATATAAAT---------------------------------
-------ACCATAAGCCCATTTCACTATAACAAT----ACTATGGGTTTATATAAATATAT---TTTTTGTATCAGTGGG
TTTTGCATGATTGGCCGGACGAAGATTGCATCAAGATACTCCGCCAGTGCAAGAAAGCCATCCCAACAAGGGACGCCGGA
GGGAAGGTGATAATCATGGATATGGTGGTGGGATATGCAGTGCCGCAGCAGGAAATCGTGTCAAAGGAGGCGGAAGTTTT
GTTTGATGTCTTCATGATGTACATCGACGGGATCCAGCGAGAGGAGCATGAGTGGAGCAAGATTTTCTTTGAAGCCGGGT
TCAGTGACTACAAGATTACACCGGTGACGGGAATTCGCTCAATTATTGAAGTCTACCCTTAAATACAGTACAAATCTTCA
TAATTCATGTTATGGATTTGAATGCAACGTTGTATGCAAATGGTACCTTTATAATCTTATCATTATCACTTAAGTAAAAT
GAGTGT----TTGACTAACTCTTCTTCTATCCTTGCAAAAAAAAAAAA----CATGTTTCACGGTCATACAGTACATTGC
AAAATCGCCATGCTTTTAAACTATAGAT-GTGTATGCCTCTGAGGAATTTACAACATCTCTATTCATGTGCAACTTTTTT
TCTTCTTGCAACCCAAATGAATATGAGTCTTAACTTCAATTTTCACATGTTTATA--ACATCACATTTCTAACAT--CAT
ATTCTTTTGAGAAATTTTTATAAACACTTCAAACGTGGTTTCCATGAAATTTTAAGTGTATTTGCTTTTCACTGGATACT
TTATTTCTCATACAAAAATCACCGGGTTCAGATCCTTACAGGCATAAACTTATAGTATTATCATTATTATTCTTT-AAAA
ATCATCTATTACCCATGGTTAAGGAAAACTGATGAACTATGTACATAACAAAAACAGAAGCA------------------
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---------------------------------------GATATGTATCACGACAGGACGATTGGAGAGGTGGACACACA
CACTTTTCGTTCCAACCCTATAAATGTGGTTAGACCAGACGACATGCCTAGATTTTTCTATCCAATTGTTGCTTTCACAA
TCAAATCACCAACCACATCACTGCAATTCTTTTCTTTTC
>chr4A_956
CATGCT--------------------------------------------------------------------------
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-----------------------------------TTATGTCAGGCTCACGGTTAGATGCGAGAGAGCAATCGCATTGAT
GCATTTGTTGTCAAGTCCAAGAGCGCAACCTTTCACCTC---TATATGAGAAGGCAACCCAAACAAGGCGAG-----CAT
TCAACAGAC----CATGGCGTCGCACGTCCAAGAAGACGAGATTA------CCATGAGCAGCGAGGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACCACCACTGCTTCGTCTACATCAAGTCCATGGCGCTCGGCGCGGCCACCGAGCTGCGAATTGCCGA
CGCCATACACCTCAGGGGTGGTGCCACCACCTTGTCTGATCTTGCCGCCGACACAGGGATCCACCGGACGAAGGTCTCCC
ACCTCCAGCGGCTCATGCGCGTGCTCACCACCTCTGGTGTCTTCTCCGTCGATGTCCAGGCTAGCG---GCGCCACCGTG
TACAAGCTCACCAGGGTTTCCGGCCTCCTCGTCGGAGTTGGCGGCGAGAGGCCACGCCGCTGCGACCTGTCCCCTATCGT
GAGCGTGTTGGTCAACCCGGTGCCCGTCACTGCTCTCTTCAGCATACGCGAGTGGTTCACCGACGGAAAGAGCGCCGCCT
---CGTCGCTCTTTGAGGTGGCGCATGGCTGTACACGGTGGGAGATGATAGCGAAGGACGCCGGCGATGACCGCGTGTTC
AACGCCGGTCTGGACGCGGACAGCCGCTTCAGTATGGAGATCATTCTAAGAGAGTACAGCGGCGTCTTCGGATCCGTGCG
CAGCTCACTGGTGGACGTCGGTGGTGCCCATGGCACCGTTGCCGCGGCCATCGCCAAGGCATTCCCGCACATAAAGTGCA
CCGTGCTGGACCTACCTGTCGTCGTCGCCGGGGCTCCTGCGGATGACAATTTGACCTTCATCGCCGGCGACATGTTTGAG
TACATCCCACCAGCGGACACCGTTCTACTCAAGGTACAAACATAGTTTTTTTTTTCTGCGAGGAAGGTACAAACTACAAA
TACAGTTAGCCG-AGACCATTTCACCATAGCAGCTAGCACTGTGGCTTTATTTAACAAAAGAAATGT---TTTCAGTGGA
TTTTGCACGATTGGGCAGACGAAGATTGCGTCAAGATACTGCGCCAATGCAAGAAAGCCATTCCGACAAGGGACGCCGGA
GGGAAGGTGATAGTCATGGATATGGTGGTCGGAACTGCAGGGTCA---CAGGAAACCGTGTCCAAGGAGACGGAGGTTTT
GTTTGATGTCTTCATGATGTACATCGACGGGACCCAGCGAGAGGAGCATCAGTGGAGCAAGATTTTCTATGAAGCTGGGT
TCAGTGACTACAGGATTACACCGATGACTGGAATTCGCTCAATTATTGAAGTCTACCCTTGAATACA-------------
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>chr4A_962
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-----------------------------------TTATGTCAGGCTCACGGTTAGATGCGAGAGAGCAATCGCATTGAT
GCATTTGTTGTCAAGTCCAAGAGCGCAACCTTTCACCTC---TATATGAGAAGGCAACCCAAACAAGGCGAG-----CAT
TCAACAGAC----CATGGCGTCGCACGTCCAAGAAGACGAGATTA------CCATGAGCAGCGAGGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACCACCACTGCTTCGTCTACATCAAGTCCATGGCGCTCGGCGCGGCCACCGAGCTGCGAATTGCCGA
CGCCATACACCTCAGGGGTGGTGCCACCACCTTGTCTGATCTTGCCGCCGACACAGGGATCCACCGGACGAAGGTCTCCC
ACCTCCAGCGGTTCATGCGCGTGCTCACCACCTCTGGTGTCTTCTCCGTCGATGTCCAGGCTAGCG---GCGCCACCATG
TACAAGCTCACCAGGGTTTCCCGCCTCCTCGTCGGAGTTGGCGGCGAGAGGTCACGCCGCTGCGACCTGTCCCCTATTGT
GAGCGTGTTGGTCAACCCGGTGCCCGTCACTGCTCTCTTCAGCATACGCGAGGGGTTCACCGACGGAAAGAGCGCCGCCT
---CGTCGCTCTTTGAGGTGGCGCATGGCTG-------------------------------------------------
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>chr1D_1019
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---------------------AGCTCAACCGTTCACCTC---TATATGAGAACGGAACCCAACAAAGCCTAG-----CAT
TCAACACAC----CATGTCGTCCCACGTCCAGGAAGATGAGCTCG------CCATGAGCAGCGATGAGTTGCTCCAAGCT
CAGCTCGAGCTCTACCACCACTCCTTCGTCTATGTCAAGTCCATGGCGCTCGGTGCCGCCACCGATCTGCGCATCGCCGA
CGCCATCCACCTTAGGGGAGGTGCTGCCACCTTGTCTGATCTTGCCGCCCATACAGGGATCCACCCGACGAAGTTCTCCC
ACCTCCGGAGGCTCATGCGCGTGCTCACCACCTCGGGCATCTTCTCCGCCGACGTCAAGGCTAGA---GGCGACACCGTG
TACAAGCTCACCCGGGTCTCTCGCCTCCTTGTTGGTGCTGGTGGCGAGAGCTCGCGCCGCCGTGACCTGTCTCCAATGGT
TGGCGTGTTTGTCAACCCGGTCGCCATCGCTGCTCTCTTTAGCATACGCGAGTGGTTCACCGACGAAAACAGCGCCGCCT
CATCGTCTCTCTTCGAGATGGCGCATGGTTGTACACGGTGGGAGATGATAGCAAAGGACGCCGGCGAGGGTCGCGTGTTC
AATGCCGGCATGGCCGCAGACAGCTGCCTCAGTATGGAGATCCTCCTAAAAGAGTGCAGCAGCGTCTTCGGATCCCTAGG
CAGCTCACTGGTCGATGTCGGTGGCGCCCATGGCACTGCTGCTGCGGTCGTTGCCAAGGCATTCCCACACGTCAAGTGTA
CCGTGCTGGACCTCCCTCGCGTCGTCGCTGGGGCTCCTGCCCATGCTAATTTAACCTTCGTCCCCGGCGACATGTTTGAG
TACATCCCGCCGGCGGACACCGTTCTACTCAAGGTAAACATACAACC---------------------------------
-------TGCAT-AGTCCATTTCACTATAACAAC----ATTATGGGTTTAAATATATATATATATTTTTGTTTCAGTGGG
TTTTGCATGATTGGCCAGACGAAGATTGCATCAAGATACTGCGCCAGTGCAAGAAAGCAATCCCGACAAGGGACGCTGGA
GGGAAGGTGATAATCATGGATATGGTGGTCGGATCTCAAGGGCTGCAGCAGGAAACCGTGTCCAATGAGGCGGAGGTTTT
GTTCGATGTCTTCATAATGCATATCGACGGGATCCAGCGAGAGGAGCATGAGTGGAGGAAGATTTTCTTTGAAGCTGGGT
TCAGCGACTACAAGATTACACCCGTGACGGGAATTCGCTCAATTATTGAAGTCTACCCTTAAATAT-----AAATCTTCA
TACTTCATGTTATGGATTTGGATGCATTGTTGTATGTAAGTGGTACCTTTATAATCTTATCATTATCAATTAAGTAAAAT
GAGTGCTAGCTTGACCAACTCTTCCTCTGTCTCGCAAAAAAGAAATAAAGTGCATGATTTGCAGTCAAACAGTACGTTGC
AAAATCACCATCCTTTTAAATGATAGAC-GCGTATGCCACTAACATATTTACATG-TCGATATTCATGCGTAACTTCCTT
TCTTAGT-C--CCAAAATCAAAATTAATTTTAAATTCAATTTTCACATGTT--------ATAACATCTCTATCATACCTT
TTTCTTTTGAGAAA------------------------------------------------------------------
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>chr1B_1036
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--------------------------------------C---TATATGAGAACCGAACCCAACAGAGCCTAG-----CAT
TCAACACATCATGCATGGCGTCCCACGTCCAAGAAGATGAGCTCA------CCATGAGCAGCGATGACTTGCTCCAAGCT
CAGCTCGAGCTCTACCACCACTGCTTCGTCTATGTCAAGTCCATGGCACTCGGTGCCGCCACCGACCTGCGCATCGCCGA
CGCCATCCACCTCAGGGGCGGTGCTGTCACCTTGTCTGATCTTGCCGCTGATACAGGGATCCACCCGACGAAGCTCTCAC
ACCTCCGGCGGCTCATGCGTGTGCTCACCACCTCGGGCATCTTCTCTGCCGAAGTCAAGGCTAGCG---GCGACATGGTG
TACAAGCTCACCCGGGTCTCTCGCCTCCTTGTGGGAGCTGGCGGCGAGAGCTCTCGCCGCCGTGACCTGTCGCCGATGGT
GGGTGTGTTTGTCAACCCGGTTGCTATTACTGCTCTCTTTAGCATACACGAGTGGTTCACCGACGAAAAGAGCGCTGCCT
CACCGTCACTCTTCGAGGTAGCACATGGCTGTACCCGGTGGGAGATGATAGCAAAGGACGCCAGCGATGACCGTGTGTTC
AATGCCGGCATGGCCGCAGACTGCTGCCTCAGTATGGAGATCCTCCTAAGAGAGTGCAATGGCGTCTTCGGATCCCTGGG
CAGCTCACTGGTCGATGTTGGTGGTGCCCATGGCGCCGCTACTGCGGTGGTCGCCAAGGCATTTCCACACGTCAAGTGTA
CCGTGCTGGACCTCCCTCGTGTCATCGCCGGGGCTCCAGTCGATGATAATTTAACCTTCGTCCCCGGTGACATGTTTGAG
TACATCCCGCCGGCAGACACCGTTCTTCTCAAGGTAAAA-TACAACC---------------------------------
-------AGCAT-AGTCCATTTATCTAGAACAAC----ACACTGTGGGTT----TAAATATATATTTTTGTATCAGTGGA
TTTTGCATGATTGGCCAGACGAAGATTGCATCAAGATACTGTGCCAGTGCAAGAAAGCCATCCCGACAAGGGACGCCGGA
GGGAAGGTGATAATCATGGATATGGTGGTCGGATCTGCAGGGCCTCAGCAGGAAACCGTGTCGAAGGAGGCGGAGGTTTT
GTTCGATGTTTTCATGATGTACATCGACGGGATCCAGCGAGAGGAGCATGAGTGGAGGAAGATTTTCTTTGAAGCGGGGT
TCAGCGACTACAAGATTACACCTGTGACCGGAATTCGTTCGATTATTGAAGTCTACCCTTAAATAT-----AAATCTTCA
TACTTCATGTTATGGATTTGGATGCATTGTTGTATGTAAGTTGTACCTTTATAATGTTATCATTTTCACTTAACTAAAAT
GAGTGCTAGCTTGACAAACTCTTCCTCTGTCTCGCAAAAAAGAAATAAAGTGCAT------CAGTCAAACAATACGTTGC
AAAATCGCCATCCTTTTAAACAATAGAT-GCGTATGCCACTGACAAATTTACATG-TCAATATTCATGCGTAACTTTCTT
TCTTAGTTC--CCAAAATAAAAATGAATTTTAAATTCAATTTTCACATGTT--------ATAACATTTCTATCATACCTT
TTTCTTCTGAGAAA------------------------------------------------------------------
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---------------------------------------
>SNPs
-----------------------------S-----------S-------------------------------------S
---------------S-SS--------------S-S---------------SS---------S-----S-----------
-S-------S-----------------------S---------------------------------------------S
----------------SS----------S--------S------------S----S-----S-----------S------
--------------------------SS-------SS---------------S----------------S--S--S----
-S-----------------S--------------S---S---S--S-SSS---------------------------S--
--------------S----SS-----------------------------------------------S-----------
--------------------------S-------------------------SSSSSSSSSSSSSSSSS-----------
---------S-S--------------------SS----------------------------S--------SS-------
-S---------------S--------------SS-S------SSSSSSSSSSSSSSSSSSSSSSS-----------SS--
--S-----------------------------------------S-----------S--------S--------------
--------------------------------S-----------------S-------S-----------SS--------
------------------SSS-S---S-------------S---------------------------------------
------S-----------------------------------------------------------------S-------
------S------------------------------S--S----SSSSSS-----------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------------------------S------------
-------------S------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
-----S--------------------------------S-------------S---------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
---------------------------------S-----S-----S----------------------------------
---------------------------------------------S------------------------S---------
-------------------S--------S------------------------------S--------------S-----
-----------------S-------------------------------------SS-----------------------
--------------------------------------------------------------------------------
-S----------------------------------S-------S-----------------------------SS----
----------------------S---------------------SSSSSSSSSS-S-SSSS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----S----SSS--------------
------------S------------------S-------S----------------------------------------
---------S-----------------------S-----
>forward_450
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------------------------------AACTCAGTTGGCCGAAACCA------------------------------
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>reverse_2213
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----------------------------------------------------GAACCGTGTCAAAGGAGGCG--------
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>forward_2199
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-------------------ATATGGTGGTCGGATCTGCG-----------------------------------------
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>reverse_3266
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-----------------------------------------------------------------TGAGGTGGACACACA
CACTT---------------------------------------------------------------------------
---------------------------------------
