Multiple sequence alignment - TraesCS2D01G093600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G093600 chr2D 100.000 3544 0 0 1 3544 45509090 45505547 0.000000e+00 6545.0
1 TraesCS2D01G093600 chr2D 100.000 28 0 0 3512 3539 489353422 489353395 6.000000e-03 52.8
2 TraesCS2D01G093600 chr2A 89.237 2871 157 78 200 2986 48840789 48837987 0.000000e+00 3450.0
3 TraesCS2D01G093600 chr2A 93.333 180 11 1 3091 3270 48837942 48837764 7.540000e-67 265.0
4 TraesCS2D01G093600 chr2A 90.667 150 14 0 3269 3418 48837738 48837589 2.160000e-47 200.0
5 TraesCS2D01G093600 chr2A 97.101 69 1 1 3010 3077 48837990 48837922 8.040000e-22 115.0
6 TraesCS2D01G093600 chr2A 86.538 104 14 0 3415 3518 615340197 615340300 8.040000e-22 115.0
7 TraesCS2D01G093600 chr2A 90.323 62 3 3 3411 3471 495940848 495940907 1.050000e-10 78.7
8 TraesCS2D01G093600 chr2B 87.345 2979 164 90 200 3077 72432496 72429630 0.000000e+00 3216.0
9 TraesCS2D01G093600 chr2B 92.715 151 10 1 3269 3418 72399239 72399089 2.140000e-52 217.0
10 TraesCS2D01G093600 chr2B 92.053 151 11 1 3092 3242 72429649 72429500 9.970000e-51 211.0
11 TraesCS2D01G093600 chr2B 89.796 98 10 0 3417 3514 540257366 540257269 3.710000e-25 126.0
12 TraesCS2D01G093600 chr3D 88.837 215 20 2 1467 1681 281979947 281979737 9.760000e-66 261.0
13 TraesCS2D01G093600 chr7B 92.929 99 6 1 3411 3509 512871833 512871930 3.690000e-30 143.0
14 TraesCS2D01G093600 chr7B 88.119 101 12 0 3417 3517 597244680 597244580 1.730000e-23 121.0
15 TraesCS2D01G093600 chr5B 90.099 101 9 1 4 103 141575548 141575448 2.870000e-26 130.0
16 TraesCS2D01G093600 chr5B 88.462 104 11 1 1 103 125796234 125796337 1.340000e-24 124.0
17 TraesCS2D01G093600 chr4A 90.099 101 9 1 4 103 492348015 492348115 2.870000e-26 130.0
18 TraesCS2D01G093600 chr6B 88.462 104 12 0 3415 3518 603769783 603769680 3.710000e-25 126.0
19 TraesCS2D01G093600 chr5A 89.109 101 10 1 4 103 368097364 368097264 1.340000e-24 124.0
20 TraesCS2D01G093600 chr6A 88.350 103 11 1 4 105 276296983 276296881 4.800000e-24 122.0
21 TraesCS2D01G093600 chr6A 100.000 28 0 0 3512 3539 473258554 473258581 6.000000e-03 52.8
22 TraesCS2D01G093600 chr5D 88.889 99 10 1 6 103 287301932 287301834 1.730000e-23 121.0
23 TraesCS2D01G093600 chr4D 88.889 99 9 2 5 101 455656075 455655977 1.730000e-23 121.0
24 TraesCS2D01G093600 chr3B 88.119 101 11 1 4 103 426996209 426996109 6.220000e-23 119.0
25 TraesCS2D01G093600 chr1A 88.119 101 11 1 4 103 401680554 401680454 6.220000e-23 119.0
26 TraesCS2D01G093600 chr4B 84.615 104 16 0 3415 3518 348131482 348131585 1.740000e-18 104.0
27 TraesCS2D01G093600 chr4B 87.356 87 11 0 3415 3501 348087902 348087988 2.250000e-17 100.0
28 TraesCS2D01G093600 chr1D 81.000 100 15 3 3406 3504 8328850 8328946 3.790000e-10 76.8
29 TraesCS2D01G093600 chr7A 100.000 29 0 0 3511 3539 177754329 177754301 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G093600 chr2D 45505547 45509090 3543 True 6545.0 6545 100.0000 1 3544 1 chr2D.!!$R1 3543
1 TraesCS2D01G093600 chr2A 48837589 48840789 3200 True 1007.5 3450 92.5845 200 3418 4 chr2A.!!$R1 3218
2 TraesCS2D01G093600 chr2B 72429500 72432496 2996 True 1713.5 3216 89.6990 200 3242 2 chr2B.!!$R3 3042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1031 0.248743 TCGTCGTCGTCTTGTTTGCT 60.249 50.0 1.33 0.0 38.33 3.91 F
1210 1307 0.445436 CGTTGATGCTGTCTTGCTCC 59.555 55.0 0.00 0.0 0.00 4.70 F
1240 1337 0.487325 TCCCTCTCCCTGTGAGTTGA 59.513 55.0 0.00 0.0 42.12 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 2011 0.735978 TGATGATGAACGTTCGCGCT 60.736 50.000 22.48 8.23 46.04 5.92 R
2463 2592 1.001048 GCAACAAACAGAGCAGATGCA 60.001 47.619 7.68 0.00 45.16 3.96 R
3138 3306 1.234615 CCATGACGGTTTGCGGTTCT 61.235 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.347216 CAGATTTTGAGAATGGGTCGGT 58.653 45.455 0.00 0.00 0.00 4.69
22 23 3.127548 CAGATTTTGAGAATGGGTCGGTG 59.872 47.826 0.00 0.00 0.00 4.94
23 24 1.243902 TTTTGAGAATGGGTCGGTGC 58.756 50.000 0.00 0.00 0.00 5.01
24 25 0.953471 TTTGAGAATGGGTCGGTGCG 60.953 55.000 0.00 0.00 0.00 5.34
25 26 2.107041 TTGAGAATGGGTCGGTGCGT 62.107 55.000 0.00 0.00 0.00 5.24
26 27 1.375523 GAGAATGGGTCGGTGCGTT 60.376 57.895 0.00 0.00 0.00 4.84
27 28 1.635663 GAGAATGGGTCGGTGCGTTG 61.636 60.000 0.00 0.00 0.00 4.10
28 29 2.671619 AATGGGTCGGTGCGTTGG 60.672 61.111 0.00 0.00 0.00 3.77
40 41 4.992294 CGTTGGCCCGGCGTTTTG 62.992 66.667 6.01 0.00 0.00 2.44
41 42 3.906879 GTTGGCCCGGCGTTTTGT 61.907 61.111 6.01 0.00 0.00 2.83
42 43 3.597728 TTGGCCCGGCGTTTTGTC 61.598 61.111 6.01 0.00 0.00 3.18
51 52 4.712873 CGTTTTGTCCGCGGCGAC 62.713 66.667 25.92 15.89 0.00 5.19
52 53 4.379143 GTTTTGTCCGCGGCGACC 62.379 66.667 25.92 13.91 31.35 4.79
62 63 4.973055 CGGCGACCCAAACGGACA 62.973 66.667 0.00 0.00 34.64 4.02
63 64 2.359478 GGCGACCCAAACGGACAT 60.359 61.111 0.00 0.00 34.64 3.06
64 65 2.686816 GGCGACCCAAACGGACATG 61.687 63.158 0.00 0.00 34.64 3.21
65 66 1.669760 GCGACCCAAACGGACATGA 60.670 57.895 0.00 0.00 34.64 3.07
66 67 1.635663 GCGACCCAAACGGACATGAG 61.636 60.000 0.00 0.00 34.64 2.90
67 68 1.635663 CGACCCAAACGGACATGAGC 61.636 60.000 0.00 0.00 34.64 4.26
68 69 1.635663 GACCCAAACGGACATGAGCG 61.636 60.000 0.00 0.00 34.64 5.03
69 70 2.398554 CCCAAACGGACATGAGCGG 61.399 63.158 0.00 0.00 0.00 5.52
70 71 1.375396 CCAAACGGACATGAGCGGA 60.375 57.895 0.00 0.00 0.00 5.54
71 72 1.635663 CCAAACGGACATGAGCGGAC 61.636 60.000 0.00 0.00 0.00 4.79
72 73 1.736645 AAACGGACATGAGCGGACG 60.737 57.895 0.00 0.00 0.00 4.79
73 74 2.149803 AAACGGACATGAGCGGACGA 62.150 55.000 0.00 0.00 0.00 4.20
74 75 2.149803 AACGGACATGAGCGGACGAA 62.150 55.000 0.00 0.00 0.00 3.85
75 76 1.445410 CGGACATGAGCGGACGAAA 60.445 57.895 0.00 0.00 0.00 3.46
76 77 0.806102 CGGACATGAGCGGACGAAAT 60.806 55.000 0.00 0.00 0.00 2.17
77 78 0.652592 GGACATGAGCGGACGAAATG 59.347 55.000 0.00 0.00 0.00 2.32
78 79 0.652592 GACATGAGCGGACGAAATGG 59.347 55.000 0.00 0.00 0.00 3.16
79 80 0.744414 ACATGAGCGGACGAAATGGG 60.744 55.000 0.00 0.00 0.00 4.00
80 81 0.744414 CATGAGCGGACGAAATGGGT 60.744 55.000 0.00 0.00 0.00 4.51
81 82 0.462047 ATGAGCGGACGAAATGGGTC 60.462 55.000 0.00 0.00 0.00 4.46
82 83 2.125673 AGCGGACGAAATGGGTCG 60.126 61.111 0.00 0.00 46.54 4.79
83 84 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
84 85 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
85 86 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
95 96 4.324991 GGTCGCCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.07 3.01
96 97 3.047877 GTCGCCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.07 3.16
99 100 3.056328 GCCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 35.39 4.26
100 101 2.750350 CCCCGTTGGAGTTGCTCT 59.250 61.111 0.00 0.00 35.39 4.09
101 102 1.073199 CCCCGTTGGAGTTGCTCTT 59.927 57.895 0.00 0.00 35.39 2.85
102 103 0.323629 CCCCGTTGGAGTTGCTCTTA 59.676 55.000 0.00 0.00 35.39 2.10
103 104 1.065418 CCCCGTTGGAGTTGCTCTTAT 60.065 52.381 0.00 0.00 35.39 1.73
104 105 2.009774 CCCGTTGGAGTTGCTCTTATG 58.990 52.381 0.00 0.00 0.00 1.90
105 106 2.615493 CCCGTTGGAGTTGCTCTTATGT 60.615 50.000 0.00 0.00 0.00 2.29
106 107 3.074412 CCGTTGGAGTTGCTCTTATGTT 58.926 45.455 0.00 0.00 0.00 2.71
107 108 3.120199 CCGTTGGAGTTGCTCTTATGTTG 60.120 47.826 0.00 0.00 0.00 3.33
108 109 3.498397 CGTTGGAGTTGCTCTTATGTTGT 59.502 43.478 0.00 0.00 0.00 3.32
109 110 4.024048 CGTTGGAGTTGCTCTTATGTTGTT 60.024 41.667 0.00 0.00 0.00 2.83
110 111 5.505654 CGTTGGAGTTGCTCTTATGTTGTTT 60.506 40.000 0.00 0.00 0.00 2.83
111 112 5.437289 TGGAGTTGCTCTTATGTTGTTTG 57.563 39.130 0.00 0.00 0.00 2.93
112 113 4.887071 TGGAGTTGCTCTTATGTTGTTTGT 59.113 37.500 0.00 0.00 0.00 2.83
113 114 5.359576 TGGAGTTGCTCTTATGTTGTTTGTT 59.640 36.000 0.00 0.00 0.00 2.83
114 115 6.127479 TGGAGTTGCTCTTATGTTGTTTGTTT 60.127 34.615 0.00 0.00 0.00 2.83
115 116 7.067615 TGGAGTTGCTCTTATGTTGTTTGTTTA 59.932 33.333 0.00 0.00 0.00 2.01
116 117 8.082242 GGAGTTGCTCTTATGTTGTTTGTTTAT 58.918 33.333 0.00 0.00 0.00 1.40
117 118 9.118236 GAGTTGCTCTTATGTTGTTTGTTTATC 57.882 33.333 0.00 0.00 0.00 1.75
118 119 8.850156 AGTTGCTCTTATGTTGTTTGTTTATCT 58.150 29.630 0.00 0.00 0.00 1.98
119 120 8.905702 GTTGCTCTTATGTTGTTTGTTTATCTG 58.094 33.333 0.00 0.00 0.00 2.90
120 121 7.083858 TGCTCTTATGTTGTTTGTTTATCTGC 58.916 34.615 0.00 0.00 0.00 4.26
121 122 7.083858 GCTCTTATGTTGTTTGTTTATCTGCA 58.916 34.615 0.00 0.00 0.00 4.41
122 123 7.756722 GCTCTTATGTTGTTTGTTTATCTGCAT 59.243 33.333 0.00 0.00 0.00 3.96
123 124 8.969121 TCTTATGTTGTTTGTTTATCTGCATG 57.031 30.769 0.00 0.00 0.00 4.06
124 125 7.541783 TCTTATGTTGTTTGTTTATCTGCATGC 59.458 33.333 11.82 11.82 0.00 4.06
125 126 4.941657 TGTTGTTTGTTTATCTGCATGCA 58.058 34.783 21.29 21.29 0.00 3.96
126 127 4.744137 TGTTGTTTGTTTATCTGCATGCAC 59.256 37.500 18.46 6.53 0.00 4.57
127 128 4.852134 TGTTTGTTTATCTGCATGCACT 57.148 36.364 18.46 9.83 0.00 4.40
128 129 4.797471 TGTTTGTTTATCTGCATGCACTC 58.203 39.130 18.46 4.36 0.00 3.51
129 130 4.277921 TGTTTGTTTATCTGCATGCACTCA 59.722 37.500 18.46 3.75 0.00 3.41
130 131 4.690184 TTGTTTATCTGCATGCACTCAG 57.310 40.909 18.46 7.38 0.00 3.35
131 132 3.011818 TGTTTATCTGCATGCACTCAGG 58.988 45.455 18.46 6.94 0.00 3.86
136 137 2.482374 GCATGCACTCAGGCGTTC 59.518 61.111 14.21 0.00 40.32 3.95
137 138 2.780643 CATGCACTCAGGCGTTCG 59.219 61.111 0.00 0.00 36.28 3.95
138 139 2.434884 ATGCACTCAGGCGTTCGG 60.435 61.111 0.00 0.00 36.28 4.30
141 142 2.571757 CACTCAGGCGTTCGGCTA 59.428 61.111 19.74 8.78 42.94 3.93
142 143 1.080093 CACTCAGGCGTTCGGCTAA 60.080 57.895 19.74 6.21 42.94 3.09
143 144 0.460284 CACTCAGGCGTTCGGCTAAT 60.460 55.000 19.74 6.83 42.94 1.73
144 145 0.249398 ACTCAGGCGTTCGGCTAATT 59.751 50.000 19.74 5.37 42.94 1.40
145 146 0.931005 CTCAGGCGTTCGGCTAATTC 59.069 55.000 19.74 0.00 42.94 2.17
146 147 0.535335 TCAGGCGTTCGGCTAATTCT 59.465 50.000 19.74 0.00 42.94 2.40
147 148 0.652592 CAGGCGTTCGGCTAATTCTG 59.347 55.000 19.74 5.18 42.94 3.02
148 149 1.090052 AGGCGTTCGGCTAATTCTGC 61.090 55.000 18.88 0.00 42.94 4.26
149 150 1.090052 GGCGTTCGGCTAATTCTGCT 61.090 55.000 11.30 0.00 42.94 4.24
150 151 0.727398 GCGTTCGGCTAATTCTGCTT 59.273 50.000 3.84 0.00 39.11 3.91
151 152 1.931172 GCGTTCGGCTAATTCTGCTTA 59.069 47.619 3.84 0.00 39.11 3.09
152 153 2.544267 GCGTTCGGCTAATTCTGCTTAT 59.456 45.455 3.84 0.00 39.11 1.73
153 154 3.002348 GCGTTCGGCTAATTCTGCTTATT 59.998 43.478 3.84 0.00 39.11 1.40
154 155 4.495844 GCGTTCGGCTAATTCTGCTTATTT 60.496 41.667 3.84 0.00 39.11 1.40
155 156 4.963953 CGTTCGGCTAATTCTGCTTATTTG 59.036 41.667 3.84 0.00 0.00 2.32
156 157 4.552166 TCGGCTAATTCTGCTTATTTGC 57.448 40.909 3.84 0.00 34.45 3.68
157 158 4.199310 TCGGCTAATTCTGCTTATTTGCT 58.801 39.130 0.00 0.00 35.20 3.91
158 159 5.364778 TCGGCTAATTCTGCTTATTTGCTA 58.635 37.500 0.00 0.00 35.20 3.49
159 160 5.236478 TCGGCTAATTCTGCTTATTTGCTAC 59.764 40.000 0.00 0.00 35.20 3.58
160 161 5.237344 CGGCTAATTCTGCTTATTTGCTACT 59.763 40.000 0.00 0.00 35.20 2.57
161 162 6.564873 CGGCTAATTCTGCTTATTTGCTACTC 60.565 42.308 0.00 0.00 35.20 2.59
162 163 6.293680 GGCTAATTCTGCTTATTTGCTACTCC 60.294 42.308 0.00 0.00 35.20 3.85
163 164 6.293680 GCTAATTCTGCTTATTTGCTACTCCC 60.294 42.308 0.00 0.00 33.11 4.30
164 165 3.560636 TCTGCTTATTTGCTACTCCCC 57.439 47.619 0.00 0.00 0.00 4.81
165 166 2.158957 TCTGCTTATTTGCTACTCCCCG 60.159 50.000 0.00 0.00 0.00 5.73
166 167 1.134220 TGCTTATTTGCTACTCCCCGG 60.134 52.381 0.00 0.00 0.00 5.73
167 168 1.134189 GCTTATTTGCTACTCCCCGGT 60.134 52.381 0.00 0.00 0.00 5.28
168 169 2.835027 CTTATTTGCTACTCCCCGGTC 58.165 52.381 0.00 0.00 0.00 4.79
169 170 1.125633 TATTTGCTACTCCCCGGTCC 58.874 55.000 0.00 0.00 0.00 4.46
170 171 1.632965 ATTTGCTACTCCCCGGTCCC 61.633 60.000 0.00 0.00 0.00 4.46
171 172 3.549433 TTGCTACTCCCCGGTCCCA 62.549 63.158 0.00 0.00 0.00 4.37
172 173 2.446036 GCTACTCCCCGGTCCCAT 60.446 66.667 0.00 0.00 0.00 4.00
173 174 1.152398 GCTACTCCCCGGTCCCATA 60.152 63.158 0.00 0.00 0.00 2.74
174 175 0.761702 GCTACTCCCCGGTCCCATAA 60.762 60.000 0.00 0.00 0.00 1.90
175 176 2.025636 CTACTCCCCGGTCCCATAAT 57.974 55.000 0.00 0.00 0.00 1.28
176 177 2.824303 GCTACTCCCCGGTCCCATAATA 60.824 54.545 0.00 0.00 0.00 0.98
177 178 2.735259 ACTCCCCGGTCCCATAATAT 57.265 50.000 0.00 0.00 0.00 1.28
178 179 3.858696 ACTCCCCGGTCCCATAATATA 57.141 47.619 0.00 0.00 0.00 0.86
179 180 4.150516 ACTCCCCGGTCCCATAATATAA 57.849 45.455 0.00 0.00 0.00 0.98
180 181 4.101856 ACTCCCCGGTCCCATAATATAAG 58.898 47.826 0.00 0.00 0.00 1.73
181 182 4.202858 ACTCCCCGGTCCCATAATATAAGA 60.203 45.833 0.00 0.00 0.00 2.10
182 183 4.765629 TCCCCGGTCCCATAATATAAGAA 58.234 43.478 0.00 0.00 0.00 2.52
183 184 4.533311 TCCCCGGTCCCATAATATAAGAAC 59.467 45.833 0.00 0.00 0.00 3.01
184 185 4.501071 CCCGGTCCCATAATATAAGAACG 58.499 47.826 0.00 3.11 37.40 3.95
185 186 4.221262 CCCGGTCCCATAATATAAGAACGA 59.779 45.833 9.76 0.00 39.98 3.85
186 187 5.166398 CCGGTCCCATAATATAAGAACGAC 58.834 45.833 9.76 0.00 39.98 4.34
187 188 5.047519 CCGGTCCCATAATATAAGAACGACT 60.048 44.000 9.76 0.00 39.98 4.18
188 189 6.453092 CGGTCCCATAATATAAGAACGACTT 58.547 40.000 3.84 0.00 39.98 3.01
189 190 6.927381 CGGTCCCATAATATAAGAACGACTTT 59.073 38.462 3.84 0.00 39.98 2.66
190 191 7.115947 CGGTCCCATAATATAAGAACGACTTTC 59.884 40.741 3.84 0.00 39.98 2.62
191 192 7.929785 GGTCCCATAATATAAGAACGACTTTCA 59.070 37.037 0.00 0.00 39.72 2.69
192 193 9.321562 GTCCCATAATATAAGAACGACTTTCAA 57.678 33.333 0.00 0.00 39.72 2.69
193 194 9.542462 TCCCATAATATAAGAACGACTTTCAAG 57.458 33.333 0.00 0.00 39.72 3.02
194 195 8.283291 CCCATAATATAAGAACGACTTTCAAGC 58.717 37.037 0.00 0.00 39.72 4.01
195 196 9.046296 CCATAATATAAGAACGACTTTCAAGCT 57.954 33.333 0.00 0.00 39.72 3.74
196 197 9.855361 CATAATATAAGAACGACTTTCAAGCTG 57.145 33.333 0.00 0.00 39.72 4.24
197 198 9.817809 ATAATATAAGAACGACTTTCAAGCTGA 57.182 29.630 0.00 0.00 39.72 4.26
198 199 7.763172 ATATAAGAACGACTTTCAAGCTGAG 57.237 36.000 0.00 0.00 39.72 3.35
204 205 7.152645 AGAACGACTTTCAAGCTGAGTATTTA 58.847 34.615 0.00 0.00 36.57 1.40
261 262 1.341679 ACCAGGATCGCACCTACTGTA 60.342 52.381 0.00 0.00 38.32 2.74
262 263 1.067212 CCAGGATCGCACCTACTGTAC 59.933 57.143 0.25 0.00 38.32 2.90
263 264 2.025155 CAGGATCGCACCTACTGTACT 58.975 52.381 0.00 0.00 38.32 2.73
264 265 2.427453 CAGGATCGCACCTACTGTACTT 59.573 50.000 0.00 0.00 38.32 2.24
265 266 2.427453 AGGATCGCACCTACTGTACTTG 59.573 50.000 0.00 0.00 38.65 3.16
407 417 3.957497 TCTTTACCTTCCAAGCAAGCAAA 59.043 39.130 0.00 0.00 0.00 3.68
409 419 0.752658 ACCTTCCAAGCAAGCAAACC 59.247 50.000 0.00 0.00 0.00 3.27
410 420 0.752054 CCTTCCAAGCAAGCAAACCA 59.248 50.000 0.00 0.00 0.00 3.67
411 421 1.345415 CCTTCCAAGCAAGCAAACCAT 59.655 47.619 0.00 0.00 0.00 3.55
413 423 0.680618 TCCAAGCAAGCAAACCATGG 59.319 50.000 11.19 11.19 0.00 3.66
414 424 0.952010 CCAAGCAAGCAAACCATGGC 60.952 55.000 13.04 0.00 0.00 4.40
415 425 1.005867 AAGCAAGCAAACCATGGCG 60.006 52.632 13.04 1.24 34.54 5.69
416 426 3.113979 GCAAGCAAACCATGGCGC 61.114 61.111 13.04 12.62 34.54 6.53
418 428 3.294493 AAGCAAACCATGGCGCGT 61.294 55.556 13.04 7.87 34.54 6.01
467 477 3.274586 CTGCCATGGACGCCATCG 61.275 66.667 18.40 4.17 43.15 3.84
548 571 6.531948 CGCCATATACTAGGAAAGTCATAAGC 59.468 42.308 0.00 0.00 39.80 3.09
557 580 8.038944 ACTAGGAAAGTCATAAGCGAATTAACA 58.961 33.333 0.00 0.00 30.33 2.41
558 581 7.865706 AGGAAAGTCATAAGCGAATTAACAT 57.134 32.000 0.00 0.00 0.00 2.71
561 598 8.064814 GGAAAGTCATAAGCGAATTAACATCTC 58.935 37.037 0.00 0.00 0.00 2.75
566 603 9.464714 GTCATAAGCGAATTAACATCTCTCTAA 57.535 33.333 0.00 0.00 0.00 2.10
673 719 1.238439 CACATCCACGGGCATATTCC 58.762 55.000 0.00 0.00 0.00 3.01
684 741 0.321122 GCATATTCCCAGCTCCCTCG 60.321 60.000 0.00 0.00 0.00 4.63
720 777 4.561735 TTTCCATTCACACGTTTTCTCC 57.438 40.909 0.00 0.00 0.00 3.71
740 797 0.586748 CGTCTCCGTTCACGATCGAG 60.587 60.000 24.34 15.06 43.02 4.04
742 799 1.586564 CTCCGTTCACGATCGAGCC 60.587 63.158 24.34 7.03 43.02 4.70
781 838 2.901042 GATCGCCTTCCCTTCCGT 59.099 61.111 0.00 0.00 0.00 4.69
790 847 3.391382 CCCTTCCGTCCCTCGCTT 61.391 66.667 0.00 0.00 38.35 4.68
885 943 7.553334 TGCTTATTATATAGACCCCGATTGTC 58.447 38.462 0.00 0.00 0.00 3.18
941 1005 5.041191 TGAAACCTGCTTCTTCTTCTTCT 57.959 39.130 0.00 0.00 0.00 2.85
944 1008 4.972751 ACCTGCTTCTTCTTCTTCTTCT 57.027 40.909 0.00 0.00 0.00 2.85
947 1011 5.071653 ACCTGCTTCTTCTTCTTCTTCTTCT 59.928 40.000 0.00 0.00 0.00 2.85
956 1020 3.184649 TCTTCTTCTTCTTCGTCGTCG 57.815 47.619 0.00 0.00 38.55 5.12
964 1028 2.480224 TCTTCGTCGTCGTCTTGTTT 57.520 45.000 1.33 0.00 38.33 2.83
965 1029 2.114056 TCTTCGTCGTCGTCTTGTTTG 58.886 47.619 1.33 0.00 38.33 2.93
966 1030 0.573521 TTCGTCGTCGTCTTGTTTGC 59.426 50.000 1.33 0.00 38.33 3.68
967 1031 0.248743 TCGTCGTCGTCTTGTTTGCT 60.249 50.000 1.33 0.00 38.33 3.91
970 1034 0.927537 TCGTCGTCTTGTTTGCTGTG 59.072 50.000 0.00 0.00 0.00 3.66
972 1036 1.295792 GTCGTCTTGTTTGCTGTGGA 58.704 50.000 0.00 0.00 0.00 4.02
974 1038 3.064207 GTCGTCTTGTTTGCTGTGGATA 58.936 45.455 0.00 0.00 0.00 2.59
976 1040 4.868171 GTCGTCTTGTTTGCTGTGGATATA 59.132 41.667 0.00 0.00 0.00 0.86
978 1042 5.753438 TCGTCTTGTTTGCTGTGGATATATC 59.247 40.000 3.96 3.96 0.00 1.63
1044 1108 3.195698 GGCAACTCGTCCGCATCC 61.196 66.667 0.00 0.00 0.00 3.51
1045 1109 2.434185 GCAACTCGTCCGCATCCA 60.434 61.111 0.00 0.00 0.00 3.41
1053 1117 2.690510 TCCGCATCCACCATGGGA 60.691 61.111 18.09 4.74 46.29 4.37
1073 1137 3.376540 GACAGCAGGTATCTTGATCGAC 58.623 50.000 0.00 0.00 0.00 4.20
1089 1161 1.751351 TCGACGCCATCTCTCTGAATT 59.249 47.619 0.00 0.00 0.00 2.17
1090 1162 2.123342 CGACGCCATCTCTCTGAATTC 58.877 52.381 0.00 0.00 0.00 2.17
1091 1163 2.480244 CGACGCCATCTCTCTGAATTCA 60.480 50.000 8.12 8.12 0.00 2.57
1108 1180 0.991920 TCAGAACCCATCCCCTGTTC 59.008 55.000 0.00 0.00 38.88 3.18
1113 1185 0.916358 ACCCATCCCCTGTTCCTGAG 60.916 60.000 0.00 0.00 0.00 3.35
1114 1186 0.621571 CCCATCCCCTGTTCCTGAGA 60.622 60.000 0.00 0.00 0.00 3.27
1115 1187 1.289160 CCATCCCCTGTTCCTGAGAA 58.711 55.000 0.00 0.00 0.00 2.87
1124 1196 4.276926 CCCTGTTCCTGAGAAAGTTTCAAG 59.723 45.833 17.65 13.38 32.58 3.02
1125 1197 4.276926 CCTGTTCCTGAGAAAGTTTCAAGG 59.723 45.833 22.54 22.54 37.21 3.61
1126 1198 4.207165 TGTTCCTGAGAAAGTTTCAAGGG 58.793 43.478 25.60 19.06 36.78 3.95
1128 1200 4.357918 TCCTGAGAAAGTTTCAAGGGAG 57.642 45.455 25.60 12.12 36.78 4.30
1150 1247 4.141158 AGACCAACCAGTTTCTTGAGGAAT 60.141 41.667 0.00 0.00 33.53 3.01
1171 1268 0.462225 TTTCCGTTTCACCGCTCACA 60.462 50.000 0.00 0.00 0.00 3.58
1172 1269 0.878523 TTCCGTTTCACCGCTCACAG 60.879 55.000 0.00 0.00 0.00 3.66
1173 1270 2.317609 CCGTTTCACCGCTCACAGG 61.318 63.158 0.00 0.00 0.00 4.00
1174 1271 2.946762 GTTTCACCGCTCACAGGC 59.053 61.111 0.00 0.00 0.00 4.85
1189 1286 4.715523 GGCGGTGCCCTGTTGCTA 62.716 66.667 0.00 0.00 44.06 3.49
1210 1307 0.445436 CGTTGATGCTGTCTTGCTCC 59.555 55.000 0.00 0.00 0.00 4.70
1212 1309 0.674581 TTGATGCTGTCTTGCTCCCG 60.675 55.000 0.00 0.00 0.00 5.14
1213 1310 1.219124 GATGCTGTCTTGCTCCCGA 59.781 57.895 0.00 0.00 0.00 5.14
1219 1316 2.414691 GCTGTCTTGCTCCCGATTTTTC 60.415 50.000 0.00 0.00 0.00 2.29
1240 1337 0.487325 TCCCTCTCCCTGTGAGTTGA 59.513 55.000 0.00 0.00 42.12 3.18
1328 1435 9.170584 GCGTTATCTCAAGATTTTATTTTAGGC 57.829 33.333 0.00 0.00 36.05 3.93
1348 1455 3.181500 GGCCCGTTGATGTTTCTTCATAC 60.181 47.826 0.00 0.00 0.00 2.39
1349 1456 3.438781 GCCCGTTGATGTTTCTTCATACA 59.561 43.478 0.00 0.00 0.00 2.29
1350 1457 4.437390 GCCCGTTGATGTTTCTTCATACAG 60.437 45.833 0.00 0.00 0.00 2.74
1394 1502 7.677747 GCGTTATCTGAACATTTTATTTCCGGA 60.678 37.037 0.00 0.00 0.00 5.14
1408 1516 1.902556 CCGGACCGGTTACCAGAAT 59.097 57.895 25.54 0.00 42.73 2.40
1433 1541 1.967319 TCCAGCACAAAGGAGAACAC 58.033 50.000 0.00 0.00 0.00 3.32
1434 1542 1.490490 TCCAGCACAAAGGAGAACACT 59.510 47.619 0.00 0.00 0.00 3.55
1452 1564 0.830648 CTCTTCGGTTGGGGCATCTA 59.169 55.000 0.00 0.00 0.00 1.98
1482 1595 3.542291 GCGTGCTGTCTAATTTTCTAGCG 60.542 47.826 0.00 0.00 34.07 4.26
1512 1625 1.283793 CTTTTGCACAGCACGGGAG 59.716 57.895 0.00 0.00 38.71 4.30
1515 1628 0.537143 TTTGCACAGCACGGGAGATT 60.537 50.000 0.00 0.00 38.71 2.40
1543 1660 2.285083 TCTTATTTGAATCGCACCCCG 58.715 47.619 0.00 0.00 38.61 5.73
1653 1771 1.219124 CGATCGATAGGGCCATGGG 59.781 63.158 15.13 0.00 0.00 4.00
1704 1824 5.182487 ACAAACCATATAATCACTGCGTCA 58.818 37.500 0.00 0.00 0.00 4.35
1714 1834 2.894902 TCACTGCGTCAACTTTACACA 58.105 42.857 0.00 0.00 0.00 3.72
1717 1837 3.063452 CACTGCGTCAACTTTACACAAGT 59.937 43.478 0.00 0.00 0.00 3.16
1888 2011 4.130857 TCTGATTTCAAAGGTACGCAACA 58.869 39.130 0.00 0.00 0.00 3.33
1903 2026 0.785708 CAACAGCGCGAACGTTCATC 60.786 55.000 26.71 16.49 42.83 2.92
2066 2191 3.181503 CGTTCCATGAGCCTGAAGAAATG 60.182 47.826 0.00 0.00 0.00 2.32
2104 2229 8.199449 AGGATCTGGTTATATTTGTTTGCATTG 58.801 33.333 0.00 0.00 0.00 2.82
2196 2324 2.026636 GGCAAGGTACTGGTGTAATCCA 60.027 50.000 0.00 0.00 40.86 3.41
2244 2372 2.371841 TGCCCTGACAAGTTAGATGTGT 59.628 45.455 0.00 0.00 0.00 3.72
2245 2373 2.744202 GCCCTGACAAGTTAGATGTGTG 59.256 50.000 0.00 0.00 0.00 3.82
2246 2374 2.744202 CCCTGACAAGTTAGATGTGTGC 59.256 50.000 0.00 0.00 0.00 4.57
2248 2376 4.322725 CCCTGACAAGTTAGATGTGTGCTA 60.323 45.833 0.00 0.00 0.00 3.49
2249 2377 4.627467 CCTGACAAGTTAGATGTGTGCTAC 59.373 45.833 0.00 0.00 0.00 3.58
2266 2394 2.231235 GCTACATCCACAAAACCCCTTG 59.769 50.000 0.00 0.00 0.00 3.61
2439 2568 6.073657 GCATCTATCATTCAGACTTTCAGAGC 60.074 42.308 0.00 0.00 0.00 4.09
2460 2589 2.601763 CTGAACCGCGGTGTAAGTAATC 59.398 50.000 34.95 22.86 0.00 1.75
2461 2590 1.585214 GAACCGCGGTGTAAGTAATCG 59.415 52.381 34.95 0.00 0.00 3.34
2462 2591 0.810648 ACCGCGGTGTAAGTAATCGA 59.189 50.000 33.75 0.00 0.00 3.59
2463 2592 1.406539 ACCGCGGTGTAAGTAATCGAT 59.593 47.619 33.75 0.00 0.00 3.59
2464 2593 1.784856 CCGCGGTGTAAGTAATCGATG 59.215 52.381 19.50 0.00 0.00 3.84
2465 2594 1.189446 CGCGGTGTAAGTAATCGATGC 59.811 52.381 0.00 0.00 0.00 3.91
2513 2645 3.016971 CCCCATCACCAGCTCCCA 61.017 66.667 0.00 0.00 0.00 4.37
2627 2765 5.050091 CGTTTCTGAACTAGCATGTTTCTGT 60.050 40.000 0.00 0.00 33.51 3.41
2827 2967 2.875317 GGTTCTAGCAGCCTAAGATTGC 59.125 50.000 0.00 0.00 38.09 3.56
2905 3046 7.175990 TGTTTGGTTTTCAGTACTTTTCTGTCT 59.824 33.333 0.00 0.00 34.86 3.41
2906 3047 6.920569 TGGTTTTCAGTACTTTTCTGTCTC 57.079 37.500 0.00 0.00 34.86 3.36
2993 3161 4.678509 TCGAATTCGAACAATTTCCCTG 57.321 40.909 27.36 0.00 46.30 4.45
2994 3162 3.119990 TCGAATTCGAACAATTTCCCTGC 60.120 43.478 27.36 0.00 46.30 4.85
2995 3163 3.365868 CGAATTCGAACAATTTCCCTGCA 60.366 43.478 23.29 0.00 43.02 4.41
2996 3164 4.555262 GAATTCGAACAATTTCCCTGCAA 58.445 39.130 0.00 0.00 0.00 4.08
2997 3165 4.599047 ATTCGAACAATTTCCCTGCAAA 57.401 36.364 0.00 0.00 0.00 3.68
2998 3166 4.392921 TTCGAACAATTTCCCTGCAAAA 57.607 36.364 0.00 0.00 0.00 2.44
2999 3167 4.392921 TCGAACAATTTCCCTGCAAAAA 57.607 36.364 0.00 0.00 0.00 1.94
3066 3234 7.287005 CCAAACTACTCTACCATAGTACCATCA 59.713 40.741 0.00 0.00 31.30 3.07
3067 3235 8.692710 CAAACTACTCTACCATAGTACCATCAA 58.307 37.037 0.00 0.00 31.30 2.57
3068 3236 7.820578 ACTACTCTACCATAGTACCATCAAC 57.179 40.000 0.00 0.00 29.70 3.18
3069 3237 7.584532 ACTACTCTACCATAGTACCATCAACT 58.415 38.462 0.00 0.00 29.70 3.16
3070 3238 8.721479 ACTACTCTACCATAGTACCATCAACTA 58.279 37.037 0.00 0.00 34.11 2.24
3071 3239 9.742144 CTACTCTACCATAGTACCATCAACTAT 57.258 37.037 0.00 0.00 40.07 2.12
3077 3245 8.605325 ACCATAGTACCATCAACTATATACCC 57.395 38.462 0.00 0.00 37.93 3.69
3078 3246 7.341256 ACCATAGTACCATCAACTATATACCCG 59.659 40.741 0.00 0.00 37.93 5.28
3079 3247 5.656213 AGTACCATCAACTATATACCCGC 57.344 43.478 0.00 0.00 0.00 6.13
3080 3248 5.081728 AGTACCATCAACTATATACCCGCA 58.918 41.667 0.00 0.00 0.00 5.69
3081 3249 4.967084 ACCATCAACTATATACCCGCAA 57.033 40.909 0.00 0.00 0.00 4.85
3082 3250 5.298989 ACCATCAACTATATACCCGCAAA 57.701 39.130 0.00 0.00 0.00 3.68
3083 3251 5.305585 ACCATCAACTATATACCCGCAAAG 58.694 41.667 0.00 0.00 0.00 2.77
3084 3252 5.071250 ACCATCAACTATATACCCGCAAAGA 59.929 40.000 0.00 0.00 0.00 2.52
3085 3253 5.995282 CCATCAACTATATACCCGCAAAGAA 59.005 40.000 0.00 0.00 0.00 2.52
3086 3254 6.485313 CCATCAACTATATACCCGCAAAGAAA 59.515 38.462 0.00 0.00 0.00 2.52
3087 3255 7.012894 CCATCAACTATATACCCGCAAAGAAAA 59.987 37.037 0.00 0.00 0.00 2.29
3088 3256 7.548196 TCAACTATATACCCGCAAAGAAAAG 57.452 36.000 0.00 0.00 0.00 2.27
3089 3257 7.332557 TCAACTATATACCCGCAAAGAAAAGA 58.667 34.615 0.00 0.00 0.00 2.52
3090 3258 7.825270 TCAACTATATACCCGCAAAGAAAAGAA 59.175 33.333 0.00 0.00 0.00 2.52
3091 3259 7.787725 ACTATATACCCGCAAAGAAAAGAAG 57.212 36.000 0.00 0.00 0.00 2.85
3092 3260 7.336396 ACTATATACCCGCAAAGAAAAGAAGT 58.664 34.615 0.00 0.00 0.00 3.01
3093 3261 8.480501 ACTATATACCCGCAAAGAAAAGAAGTA 58.519 33.333 0.00 0.00 0.00 2.24
3094 3262 5.874895 ATACCCGCAAAGAAAAGAAGTAC 57.125 39.130 0.00 0.00 0.00 2.73
3095 3263 2.882761 ACCCGCAAAGAAAAGAAGTACC 59.117 45.455 0.00 0.00 0.00 3.34
3096 3264 2.882137 CCCGCAAAGAAAAGAAGTACCA 59.118 45.455 0.00 0.00 0.00 3.25
3097 3265 3.506067 CCCGCAAAGAAAAGAAGTACCAT 59.494 43.478 0.00 0.00 0.00 3.55
3098 3266 4.379499 CCCGCAAAGAAAAGAAGTACCATC 60.379 45.833 0.00 0.00 0.00 3.51
3138 3306 3.630312 GCACAACACCTAAGAACTGGAAA 59.370 43.478 0.00 0.00 0.00 3.13
3144 3312 3.746492 CACCTAAGAACTGGAAAGAACCG 59.254 47.826 0.00 0.00 0.00 4.44
3149 3317 2.357952 AGAACTGGAAAGAACCGCAAAC 59.642 45.455 0.00 0.00 0.00 2.93
3153 3321 0.040692 GGAAAGAACCGCAAACCGTC 60.041 55.000 0.00 0.00 34.38 4.79
3174 3342 5.558273 CGTCATGGTCAACTCAGTAACAAAC 60.558 44.000 0.00 0.00 0.00 2.93
3242 3410 2.460918 GCATACGAGTACAATCACGCT 58.539 47.619 0.00 0.00 0.00 5.07
3245 3413 0.038618 ACGAGTACAATCACGCTGCA 60.039 50.000 0.00 0.00 0.00 4.41
3276 3471 3.261643 TCAAACTGGCTTCAGCTATCAGA 59.738 43.478 9.68 0.00 42.06 3.27
3281 3476 5.994250 ACTGGCTTCAGCTATCAGAAATTA 58.006 37.500 9.68 0.00 42.06 1.40
3286 3481 6.540189 GGCTTCAGCTATCAGAAATTAACTCA 59.460 38.462 0.00 0.00 41.70 3.41
3305 3500 4.218417 ACTCATTGTACCTGAAAACATGGC 59.782 41.667 0.00 0.00 0.00 4.40
3314 3509 4.394920 ACCTGAAAACATGGCAATACGTAG 59.605 41.667 0.08 0.00 0.00 3.51
3361 3556 7.467557 TTTTTGAACTCATGACAGAAATTGC 57.532 32.000 0.00 0.00 0.00 3.56
3371 3566 5.772825 TGACAGAAATTGCTATATTGGGC 57.227 39.130 0.00 0.00 0.00 5.36
3376 3571 3.799432 AATTGCTATATTGGGCCGGTA 57.201 42.857 1.90 0.00 0.00 4.02
3380 3575 2.224670 TGCTATATTGGGCCGGTAAAGG 60.225 50.000 1.90 0.00 0.00 3.11
3412 3607 8.472007 TTTCTAGAGAGAGAAGTGAAAAGACT 57.528 34.615 0.00 0.00 36.80 3.24
3418 3613 9.747898 AGAGAGAGAAGTGAAAAGACTATTAGA 57.252 33.333 0.00 0.00 0.00 2.10
3420 3615 8.466798 AGAGAGAAGTGAAAAGACTATTAGAGC 58.533 37.037 0.00 0.00 0.00 4.09
3421 3616 8.128322 AGAGAAGTGAAAAGACTATTAGAGCA 57.872 34.615 0.00 0.00 0.00 4.26
3422 3617 8.589338 AGAGAAGTGAAAAGACTATTAGAGCAA 58.411 33.333 0.00 0.00 0.00 3.91
3423 3618 8.541133 AGAAGTGAAAAGACTATTAGAGCAAC 57.459 34.615 0.00 0.00 0.00 4.17
3424 3619 8.371699 AGAAGTGAAAAGACTATTAGAGCAACT 58.628 33.333 0.00 0.00 0.00 3.16
3425 3620 8.541133 AAGTGAAAAGACTATTAGAGCAACTC 57.459 34.615 0.00 0.00 0.00 3.01
3426 3621 7.902087 AGTGAAAAGACTATTAGAGCAACTCT 58.098 34.615 2.23 2.23 43.83 3.24
3427 3622 9.026121 AGTGAAAAGACTATTAGAGCAACTCTA 57.974 33.333 0.16 0.16 41.50 2.43
3428 3623 9.296400 GTGAAAAGACTATTAGAGCAACTCTAG 57.704 37.037 4.64 0.00 42.92 2.43
3429 3624 7.976734 TGAAAAGACTATTAGAGCAACTCTAGC 59.023 37.037 4.64 0.00 42.92 3.42
3430 3625 7.411486 AAAGACTATTAGAGCAACTCTAGCA 57.589 36.000 4.64 0.00 42.92 3.49
3431 3626 6.633500 AGACTATTAGAGCAACTCTAGCAG 57.367 41.667 4.64 8.17 42.92 4.24
3432 3627 6.361433 AGACTATTAGAGCAACTCTAGCAGA 58.639 40.000 15.75 0.81 42.92 4.26
3433 3628 6.262273 AGACTATTAGAGCAACTCTAGCAGAC 59.738 42.308 15.75 11.76 42.92 3.51
3434 3629 4.664150 ATTAGAGCAACTCTAGCAGACC 57.336 45.455 4.64 0.00 42.92 3.85
3435 3630 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
3436 3631 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
3437 3632 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
3438 3633 1.889530 GCAACTCTAGCAGACCCCGT 61.890 60.000 0.00 0.00 0.00 5.28
3439 3634 1.471119 CAACTCTAGCAGACCCCGTA 58.529 55.000 0.00 0.00 0.00 4.02
3440 3635 1.822990 CAACTCTAGCAGACCCCGTAA 59.177 52.381 0.00 0.00 0.00 3.18
3441 3636 2.226962 ACTCTAGCAGACCCCGTAAA 57.773 50.000 0.00 0.00 0.00 2.01
3442 3637 2.532843 ACTCTAGCAGACCCCGTAAAA 58.467 47.619 0.00 0.00 0.00 1.52
3443 3638 3.105283 ACTCTAGCAGACCCCGTAAAAT 58.895 45.455 0.00 0.00 0.00 1.82
3444 3639 3.132467 ACTCTAGCAGACCCCGTAAAATC 59.868 47.826 0.00 0.00 0.00 2.17
3445 3640 2.433239 TCTAGCAGACCCCGTAAAATCC 59.567 50.000 0.00 0.00 0.00 3.01
3446 3641 0.255033 AGCAGACCCCGTAAAATCCC 59.745 55.000 0.00 0.00 0.00 3.85
3447 3642 0.034863 GCAGACCCCGTAAAATCCCA 60.035 55.000 0.00 0.00 0.00 4.37
3448 3643 1.614850 GCAGACCCCGTAAAATCCCAA 60.615 52.381 0.00 0.00 0.00 4.12
3449 3644 2.089201 CAGACCCCGTAAAATCCCAAC 58.911 52.381 0.00 0.00 0.00 3.77
3450 3645 1.990327 AGACCCCGTAAAATCCCAACT 59.010 47.619 0.00 0.00 0.00 3.16
3451 3646 2.026542 AGACCCCGTAAAATCCCAACTC 60.027 50.000 0.00 0.00 0.00 3.01
3452 3647 1.339342 ACCCCGTAAAATCCCAACTCG 60.339 52.381 0.00 0.00 0.00 4.18
3453 3648 0.730840 CCCGTAAAATCCCAACTCGC 59.269 55.000 0.00 0.00 0.00 5.03
3454 3649 1.444836 CCGTAAAATCCCAACTCGCA 58.555 50.000 0.00 0.00 0.00 5.10
3455 3650 2.014128 CCGTAAAATCCCAACTCGCAT 58.986 47.619 0.00 0.00 0.00 4.73
3456 3651 3.199677 CCGTAAAATCCCAACTCGCATA 58.800 45.455 0.00 0.00 0.00 3.14
3457 3652 3.623960 CCGTAAAATCCCAACTCGCATAA 59.376 43.478 0.00 0.00 0.00 1.90
3458 3653 4.260620 CCGTAAAATCCCAACTCGCATAAG 60.261 45.833 0.00 0.00 0.00 1.73
3459 3654 4.331717 CGTAAAATCCCAACTCGCATAAGT 59.668 41.667 0.00 0.00 0.00 2.24
3460 3655 4.701956 AAAATCCCAACTCGCATAAGTG 57.298 40.909 0.00 0.00 0.00 3.16
3461 3656 3.350219 AATCCCAACTCGCATAAGTGT 57.650 42.857 0.00 0.00 0.00 3.55
3462 3657 2.851263 TCCCAACTCGCATAAGTGTT 57.149 45.000 0.00 0.00 0.00 3.32
3463 3658 3.134574 TCCCAACTCGCATAAGTGTTT 57.865 42.857 0.00 0.00 0.00 2.83
3464 3659 3.482436 TCCCAACTCGCATAAGTGTTTT 58.518 40.909 0.00 0.00 0.00 2.43
3465 3660 3.252215 TCCCAACTCGCATAAGTGTTTTG 59.748 43.478 0.00 0.00 0.00 2.44
3466 3661 2.979813 CCAACTCGCATAAGTGTTTTGC 59.020 45.455 0.00 0.00 0.00 3.68
3467 3662 3.549827 CCAACTCGCATAAGTGTTTTGCA 60.550 43.478 3.55 0.00 36.15 4.08
3468 3663 3.542712 ACTCGCATAAGTGTTTTGCAG 57.457 42.857 3.55 2.95 36.15 4.41
3469 3664 2.878406 ACTCGCATAAGTGTTTTGCAGT 59.122 40.909 3.55 3.42 36.15 4.40
3470 3665 3.315191 ACTCGCATAAGTGTTTTGCAGTT 59.685 39.130 3.55 0.00 42.83 3.16
3471 3666 3.884169 TCGCATAAGTGTTTTGCAGTTC 58.116 40.909 3.55 0.00 40.84 3.01
3472 3667 2.651703 CGCATAAGTGTTTTGCAGTTCG 59.348 45.455 3.55 0.00 40.84 3.95
3473 3668 2.979813 GCATAAGTGTTTTGCAGTTCGG 59.020 45.455 0.00 0.00 40.84 4.30
3474 3669 3.564511 CATAAGTGTTTTGCAGTTCGGG 58.435 45.455 0.00 0.00 40.84 5.14
3475 3670 0.744281 AAGTGTTTTGCAGTTCGGGG 59.256 50.000 0.00 0.00 36.01 5.73
3476 3671 0.106918 AGTGTTTTGCAGTTCGGGGA 60.107 50.000 0.00 0.00 0.00 4.81
3477 3672 0.741915 GTGTTTTGCAGTTCGGGGAA 59.258 50.000 0.00 0.00 0.00 3.97
3478 3673 1.135333 GTGTTTTGCAGTTCGGGGAAA 59.865 47.619 0.00 0.00 0.00 3.13
3479 3674 1.825474 TGTTTTGCAGTTCGGGGAAAA 59.175 42.857 0.00 0.00 33.95 2.29
3480 3675 2.159170 TGTTTTGCAGTTCGGGGAAAAG 60.159 45.455 0.00 0.00 36.46 2.27
3481 3676 1.770294 TTTGCAGTTCGGGGAAAAGT 58.230 45.000 0.00 0.00 0.00 2.66
3482 3677 1.028905 TTGCAGTTCGGGGAAAAGTG 58.971 50.000 0.00 0.00 0.00 3.16
3483 3678 0.106918 TGCAGTTCGGGGAAAAGTGT 60.107 50.000 0.00 0.00 31.13 3.55
3484 3679 0.310854 GCAGTTCGGGGAAAAGTGTG 59.689 55.000 0.00 0.00 31.13 3.82
3485 3680 1.675552 CAGTTCGGGGAAAAGTGTGT 58.324 50.000 0.00 0.00 0.00 3.72
3486 3681 2.841215 CAGTTCGGGGAAAAGTGTGTA 58.159 47.619 0.00 0.00 0.00 2.90
3487 3682 3.408634 CAGTTCGGGGAAAAGTGTGTAT 58.591 45.455 0.00 0.00 0.00 2.29
3488 3683 3.188460 CAGTTCGGGGAAAAGTGTGTATG 59.812 47.826 0.00 0.00 0.00 2.39
3489 3684 1.816074 TCGGGGAAAAGTGTGTATGC 58.184 50.000 0.00 0.00 0.00 3.14
3490 3685 1.072489 TCGGGGAAAAGTGTGTATGCA 59.928 47.619 0.00 0.00 0.00 3.96
3491 3686 1.468520 CGGGGAAAAGTGTGTATGCAG 59.531 52.381 0.00 0.00 0.00 4.41
3492 3687 1.818674 GGGGAAAAGTGTGTATGCAGG 59.181 52.381 0.00 0.00 0.00 4.85
3493 3688 1.202348 GGGAAAAGTGTGTATGCAGGC 59.798 52.381 0.00 0.00 0.00 4.85
3494 3689 1.202348 GGAAAAGTGTGTATGCAGGCC 59.798 52.381 0.00 0.00 0.00 5.19
3495 3690 0.881118 AAAAGTGTGTATGCAGGCCG 59.119 50.000 0.00 0.00 0.00 6.13
3496 3691 0.960364 AAAGTGTGTATGCAGGCCGG 60.960 55.000 0.00 0.00 0.00 6.13
3497 3692 3.508840 GTGTGTATGCAGGCCGGC 61.509 66.667 22.10 22.10 0.00 6.13
3517 3712 3.775654 GGGCGAGGTGAGACCCAG 61.776 72.222 0.00 0.00 42.33 4.45
3518 3713 2.997897 GGCGAGGTGAGACCCAGT 60.998 66.667 0.00 0.00 39.75 4.00
3519 3714 2.262915 GCGAGGTGAGACCCAGTG 59.737 66.667 0.00 0.00 39.75 3.66
3520 3715 2.276116 GCGAGGTGAGACCCAGTGA 61.276 63.158 0.00 0.00 39.75 3.41
3521 3716 1.587054 CGAGGTGAGACCCAGTGAC 59.413 63.158 0.00 0.00 39.75 3.67
3522 3717 1.587054 GAGGTGAGACCCAGTGACG 59.413 63.158 0.00 0.00 39.75 4.35
3523 3718 1.878656 GAGGTGAGACCCAGTGACGG 61.879 65.000 0.00 0.00 39.75 4.79
3524 3719 2.207924 GGTGAGACCCAGTGACGGT 61.208 63.158 0.00 0.00 35.88 4.83
3525 3720 1.006102 GTGAGACCCAGTGACGGTG 60.006 63.158 0.00 0.00 32.27 4.94
3526 3721 1.456892 TGAGACCCAGTGACGGTGT 60.457 57.895 0.00 0.00 32.27 4.16
3527 3722 1.289380 GAGACCCAGTGACGGTGTC 59.711 63.158 0.00 0.00 36.61 3.67
3528 3723 2.156051 GAGACCCAGTGACGGTGTCC 62.156 65.000 4.84 0.00 37.64 4.02
3529 3724 2.122989 ACCCAGTGACGGTGTCCT 60.123 61.111 0.00 0.00 30.39 3.85
3530 3725 2.343758 CCCAGTGACGGTGTCCTG 59.656 66.667 0.00 7.86 33.69 3.86
3531 3726 2.343758 CCAGTGACGGTGTCCTGG 59.656 66.667 15.33 15.33 41.12 4.45
3532 3727 2.207229 CCAGTGACGGTGTCCTGGA 61.207 63.158 20.56 0.00 45.27 3.86
3533 3728 1.006102 CAGTGACGGTGTCCTGGAC 60.006 63.158 19.96 19.96 31.82 4.02
3534 3729 1.152525 AGTGACGGTGTCCTGGACT 60.153 57.895 26.03 7.21 33.15 3.85
3535 3730 0.111832 AGTGACGGTGTCCTGGACTA 59.888 55.000 26.03 11.08 33.15 2.59
3536 3731 0.526662 GTGACGGTGTCCTGGACTAG 59.473 60.000 26.03 18.57 33.15 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.127548 CACCGACCCATTCTCAAAATCTG 59.872 47.826 0.00 0.00 0.00 2.90
1 2 3.347216 CACCGACCCATTCTCAAAATCT 58.653 45.455 0.00 0.00 0.00 2.40
2 3 2.159379 GCACCGACCCATTCTCAAAATC 60.159 50.000 0.00 0.00 0.00 2.17
3 4 1.818674 GCACCGACCCATTCTCAAAAT 59.181 47.619 0.00 0.00 0.00 1.82
4 5 1.243902 GCACCGACCCATTCTCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
5 6 0.953471 CGCACCGACCCATTCTCAAA 60.953 55.000 0.00 0.00 0.00 2.69
6 7 1.375396 CGCACCGACCCATTCTCAA 60.375 57.895 0.00 0.00 0.00 3.02
7 8 2.107041 AACGCACCGACCCATTCTCA 62.107 55.000 0.00 0.00 0.00 3.27
8 9 1.375523 AACGCACCGACCCATTCTC 60.376 57.895 0.00 0.00 0.00 2.87
9 10 1.671054 CAACGCACCGACCCATTCT 60.671 57.895 0.00 0.00 0.00 2.40
10 11 2.686816 CCAACGCACCGACCCATTC 61.687 63.158 0.00 0.00 0.00 2.67
11 12 2.671619 CCAACGCACCGACCCATT 60.672 61.111 0.00 0.00 0.00 3.16
23 24 4.992294 CAAAACGCCGGGCCAACG 62.992 66.667 14.55 13.10 0.00 4.10
24 25 3.834447 GACAAAACGCCGGGCCAAC 62.834 63.158 14.55 0.00 0.00 3.77
25 26 3.597728 GACAAAACGCCGGGCCAA 61.598 61.111 14.55 0.00 0.00 4.52
34 35 4.712873 GTCGCCGCGGACAAAACG 62.713 66.667 33.48 22.03 36.91 3.60
35 36 4.379143 GGTCGCCGCGGACAAAAC 62.379 66.667 33.48 17.55 38.70 2.43
45 46 4.973055 TGTCCGTTTGGGTCGCCG 62.973 66.667 0.00 0.00 37.00 6.46
46 47 2.359478 ATGTCCGTTTGGGTCGCC 60.359 61.111 0.00 0.00 37.00 5.54
47 48 1.635663 CTCATGTCCGTTTGGGTCGC 61.636 60.000 0.00 0.00 37.00 5.19
48 49 1.635663 GCTCATGTCCGTTTGGGTCG 61.636 60.000 0.00 0.00 37.00 4.79
49 50 1.635663 CGCTCATGTCCGTTTGGGTC 61.636 60.000 0.00 0.00 37.00 4.46
50 51 1.671054 CGCTCATGTCCGTTTGGGT 60.671 57.895 0.00 0.00 37.00 4.51
51 52 2.398554 CCGCTCATGTCCGTTTGGG 61.399 63.158 0.00 0.00 35.24 4.12
52 53 1.375396 TCCGCTCATGTCCGTTTGG 60.375 57.895 0.00 0.00 0.00 3.28
53 54 1.787847 GTCCGCTCATGTCCGTTTG 59.212 57.895 0.00 0.00 0.00 2.93
54 55 1.736645 CGTCCGCTCATGTCCGTTT 60.737 57.895 0.00 0.00 0.00 3.60
55 56 2.126071 CGTCCGCTCATGTCCGTT 60.126 61.111 0.00 0.00 0.00 4.44
56 57 2.149803 TTTCGTCCGCTCATGTCCGT 62.150 55.000 0.00 0.00 0.00 4.69
57 58 0.806102 ATTTCGTCCGCTCATGTCCG 60.806 55.000 0.00 0.00 0.00 4.79
58 59 0.652592 CATTTCGTCCGCTCATGTCC 59.347 55.000 0.00 0.00 0.00 4.02
59 60 0.652592 CCATTTCGTCCGCTCATGTC 59.347 55.000 0.00 0.00 0.00 3.06
60 61 0.744414 CCCATTTCGTCCGCTCATGT 60.744 55.000 0.00 0.00 0.00 3.21
61 62 0.744414 ACCCATTTCGTCCGCTCATG 60.744 55.000 0.00 0.00 0.00 3.07
62 63 0.462047 GACCCATTTCGTCCGCTCAT 60.462 55.000 0.00 0.00 0.00 2.90
63 64 1.079405 GACCCATTTCGTCCGCTCA 60.079 57.895 0.00 0.00 0.00 4.26
64 65 2.165301 CGACCCATTTCGTCCGCTC 61.165 63.158 0.00 0.00 34.16 5.03
65 66 2.125673 CGACCCATTTCGTCCGCT 60.126 61.111 0.00 0.00 34.16 5.52
66 67 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
67 68 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
79 80 3.047877 CAACTCCAACGGGGCGAC 61.048 66.667 0.00 0.00 36.21 5.19
82 83 3.056328 GAGCAACTCCAACGGGGC 61.056 66.667 0.00 0.00 36.21 5.80
83 84 0.323629 TAAGAGCAACTCCAACGGGG 59.676 55.000 0.00 0.00 38.37 5.73
84 85 2.009774 CATAAGAGCAACTCCAACGGG 58.990 52.381 0.00 0.00 0.00 5.28
85 86 2.699954 ACATAAGAGCAACTCCAACGG 58.300 47.619 0.00 0.00 0.00 4.44
86 87 3.498397 ACAACATAAGAGCAACTCCAACG 59.502 43.478 0.00 0.00 0.00 4.10
87 88 5.438761 AACAACATAAGAGCAACTCCAAC 57.561 39.130 0.00 0.00 0.00 3.77
88 89 5.359576 ACAAACAACATAAGAGCAACTCCAA 59.640 36.000 0.00 0.00 0.00 3.53
89 90 4.887071 ACAAACAACATAAGAGCAACTCCA 59.113 37.500 0.00 0.00 0.00 3.86
90 91 5.438761 ACAAACAACATAAGAGCAACTCC 57.561 39.130 0.00 0.00 0.00 3.85
91 92 9.118236 GATAAACAAACAACATAAGAGCAACTC 57.882 33.333 0.00 0.00 0.00 3.01
92 93 8.850156 AGATAAACAAACAACATAAGAGCAACT 58.150 29.630 0.00 0.00 0.00 3.16
93 94 8.905702 CAGATAAACAAACAACATAAGAGCAAC 58.094 33.333 0.00 0.00 0.00 4.17
94 95 7.594758 GCAGATAAACAAACAACATAAGAGCAA 59.405 33.333 0.00 0.00 0.00 3.91
95 96 7.083858 GCAGATAAACAAACAACATAAGAGCA 58.916 34.615 0.00 0.00 0.00 4.26
96 97 7.083858 TGCAGATAAACAAACAACATAAGAGC 58.916 34.615 0.00 0.00 0.00 4.09
97 98 9.069078 CATGCAGATAAACAAACAACATAAGAG 57.931 33.333 0.00 0.00 0.00 2.85
98 99 7.541783 GCATGCAGATAAACAAACAACATAAGA 59.458 33.333 14.21 0.00 0.00 2.10
99 100 7.328982 TGCATGCAGATAAACAAACAACATAAG 59.671 33.333 18.46 0.00 0.00 1.73
100 101 7.116090 GTGCATGCAGATAAACAAACAACATAA 59.884 33.333 23.41 0.00 0.00 1.90
101 102 6.585702 GTGCATGCAGATAAACAAACAACATA 59.414 34.615 23.41 0.00 0.00 2.29
102 103 5.406175 GTGCATGCAGATAAACAAACAACAT 59.594 36.000 23.41 0.00 0.00 2.71
103 104 4.744137 GTGCATGCAGATAAACAAACAACA 59.256 37.500 23.41 0.00 0.00 3.33
104 105 4.984161 AGTGCATGCAGATAAACAAACAAC 59.016 37.500 23.41 3.65 0.00 3.32
105 106 5.199024 AGTGCATGCAGATAAACAAACAA 57.801 34.783 23.41 0.00 0.00 2.83
106 107 4.277921 TGAGTGCATGCAGATAAACAAACA 59.722 37.500 23.41 7.30 0.00 2.83
107 108 4.797471 TGAGTGCATGCAGATAAACAAAC 58.203 39.130 23.41 4.95 0.00 2.93
108 109 4.082625 CCTGAGTGCATGCAGATAAACAAA 60.083 41.667 23.41 0.00 34.06 2.83
109 110 3.441222 CCTGAGTGCATGCAGATAAACAA 59.559 43.478 23.41 0.00 34.06 2.83
110 111 3.011818 CCTGAGTGCATGCAGATAAACA 58.988 45.455 23.41 13.30 34.06 2.83
111 112 2.223433 GCCTGAGTGCATGCAGATAAAC 60.223 50.000 23.41 8.26 35.94 2.01
112 113 2.019249 GCCTGAGTGCATGCAGATAAA 58.981 47.619 23.41 4.45 35.94 1.40
113 114 1.671979 GCCTGAGTGCATGCAGATAA 58.328 50.000 23.41 5.07 35.94 1.75
114 115 0.531311 CGCCTGAGTGCATGCAGATA 60.531 55.000 23.41 9.08 35.67 1.98
115 116 1.818363 CGCCTGAGTGCATGCAGAT 60.818 57.895 23.41 13.40 35.67 2.90
116 117 2.435410 CGCCTGAGTGCATGCAGA 60.435 61.111 23.41 7.25 35.67 4.26
117 118 2.249557 GAACGCCTGAGTGCATGCAG 62.250 60.000 23.41 10.32 35.67 4.41
118 119 2.281692 AACGCCTGAGTGCATGCA 60.282 55.556 18.46 18.46 35.67 3.96
119 120 2.482374 GAACGCCTGAGTGCATGC 59.518 61.111 11.82 11.82 33.02 4.06
120 121 2.743752 CCGAACGCCTGAGTGCATG 61.744 63.158 0.00 0.00 0.00 4.06
121 122 2.434884 CCGAACGCCTGAGTGCAT 60.435 61.111 0.00 0.00 0.00 3.96
123 124 3.642778 TAGCCGAACGCCTGAGTGC 62.643 63.158 0.00 0.00 38.78 4.40
124 125 0.460284 ATTAGCCGAACGCCTGAGTG 60.460 55.000 0.00 0.00 38.78 3.51
125 126 0.249398 AATTAGCCGAACGCCTGAGT 59.751 50.000 0.00 0.00 38.78 3.41
126 127 0.931005 GAATTAGCCGAACGCCTGAG 59.069 55.000 0.00 0.00 38.78 3.35
127 128 0.535335 AGAATTAGCCGAACGCCTGA 59.465 50.000 0.00 0.00 38.78 3.86
128 129 0.652592 CAGAATTAGCCGAACGCCTG 59.347 55.000 0.00 0.00 38.78 4.85
129 130 1.090052 GCAGAATTAGCCGAACGCCT 61.090 55.000 0.00 0.00 38.78 5.52
130 131 1.090052 AGCAGAATTAGCCGAACGCC 61.090 55.000 0.00 0.00 38.78 5.68
131 132 0.727398 AAGCAGAATTAGCCGAACGC 59.273 50.000 0.00 0.00 37.98 4.84
132 133 4.795970 AATAAGCAGAATTAGCCGAACG 57.204 40.909 0.00 0.00 0.00 3.95
133 134 4.735338 GCAAATAAGCAGAATTAGCCGAAC 59.265 41.667 0.00 0.00 0.00 3.95
134 135 4.640201 AGCAAATAAGCAGAATTAGCCGAA 59.360 37.500 0.00 0.00 36.85 4.30
135 136 4.199310 AGCAAATAAGCAGAATTAGCCGA 58.801 39.130 0.00 0.00 36.85 5.54
136 137 4.558538 AGCAAATAAGCAGAATTAGCCG 57.441 40.909 0.00 0.00 36.85 5.52
137 138 6.293680 GGAGTAGCAAATAAGCAGAATTAGCC 60.294 42.308 0.00 0.00 36.85 3.93
138 139 6.293680 GGGAGTAGCAAATAAGCAGAATTAGC 60.294 42.308 0.00 0.00 36.85 3.09
139 140 6.205658 GGGGAGTAGCAAATAAGCAGAATTAG 59.794 42.308 0.00 0.00 36.85 1.73
140 141 6.062095 GGGGAGTAGCAAATAAGCAGAATTA 58.938 40.000 0.00 0.00 36.85 1.40
141 142 4.889995 GGGGAGTAGCAAATAAGCAGAATT 59.110 41.667 0.00 0.00 36.85 2.17
142 143 4.464947 GGGGAGTAGCAAATAAGCAGAAT 58.535 43.478 0.00 0.00 36.85 2.40
143 144 3.681594 CGGGGAGTAGCAAATAAGCAGAA 60.682 47.826 0.00 0.00 36.85 3.02
144 145 2.158957 CGGGGAGTAGCAAATAAGCAGA 60.159 50.000 0.00 0.00 36.85 4.26
145 146 2.213499 CGGGGAGTAGCAAATAAGCAG 58.787 52.381 0.00 0.00 36.85 4.24
146 147 1.134220 CCGGGGAGTAGCAAATAAGCA 60.134 52.381 0.00 0.00 36.85 3.91
147 148 1.134189 ACCGGGGAGTAGCAAATAAGC 60.134 52.381 6.32 0.00 0.00 3.09
148 149 2.484947 GGACCGGGGAGTAGCAAATAAG 60.485 54.545 6.32 0.00 0.00 1.73
149 150 1.487558 GGACCGGGGAGTAGCAAATAA 59.512 52.381 6.32 0.00 0.00 1.40
150 151 1.125633 GGACCGGGGAGTAGCAAATA 58.874 55.000 6.32 0.00 0.00 1.40
151 152 1.632965 GGGACCGGGGAGTAGCAAAT 61.633 60.000 6.32 0.00 0.00 2.32
152 153 2.295602 GGGACCGGGGAGTAGCAAA 61.296 63.158 6.32 0.00 0.00 3.68
153 154 2.686106 GGGACCGGGGAGTAGCAA 60.686 66.667 6.32 0.00 0.00 3.91
154 155 1.951923 TATGGGACCGGGGAGTAGCA 61.952 60.000 6.32 0.00 0.00 3.49
155 156 0.761702 TTATGGGACCGGGGAGTAGC 60.762 60.000 6.32 0.00 0.00 3.58
156 157 2.025636 ATTATGGGACCGGGGAGTAG 57.974 55.000 6.32 0.00 0.00 2.57
157 158 3.858696 ATATTATGGGACCGGGGAGTA 57.141 47.619 6.32 0.00 0.00 2.59
158 159 2.735259 ATATTATGGGACCGGGGAGT 57.265 50.000 6.32 0.00 0.00 3.85
159 160 4.359105 TCTTATATTATGGGACCGGGGAG 58.641 47.826 6.32 0.00 0.00 4.30
160 161 4.423167 TCTTATATTATGGGACCGGGGA 57.577 45.455 6.32 0.00 0.00 4.81
161 162 4.622220 CGTTCTTATATTATGGGACCGGGG 60.622 50.000 6.32 0.00 0.00 5.73
162 163 4.221262 TCGTTCTTATATTATGGGACCGGG 59.779 45.833 6.32 0.00 0.00 5.73
163 164 5.047519 AGTCGTTCTTATATTATGGGACCGG 60.048 44.000 0.00 0.00 0.00 5.28
164 165 6.022163 AGTCGTTCTTATATTATGGGACCG 57.978 41.667 0.00 0.00 0.00 4.79
165 166 7.929785 TGAAAGTCGTTCTTATATTATGGGACC 59.070 37.037 0.19 0.00 37.13 4.46
166 167 8.882415 TGAAAGTCGTTCTTATATTATGGGAC 57.118 34.615 0.19 0.00 37.13 4.46
167 168 9.542462 CTTGAAAGTCGTTCTTATATTATGGGA 57.458 33.333 0.19 0.00 37.13 4.37
168 169 8.283291 GCTTGAAAGTCGTTCTTATATTATGGG 58.717 37.037 0.19 0.00 37.13 4.00
169 170 9.046296 AGCTTGAAAGTCGTTCTTATATTATGG 57.954 33.333 0.19 0.00 37.13 2.74
170 171 9.855361 CAGCTTGAAAGTCGTTCTTATATTATG 57.145 33.333 0.19 0.00 37.13 1.90
171 172 9.817809 TCAGCTTGAAAGTCGTTCTTATATTAT 57.182 29.630 0.19 0.00 37.13 1.28
172 173 9.302345 CTCAGCTTGAAAGTCGTTCTTATATTA 57.698 33.333 0.19 0.00 37.13 0.98
173 174 7.819900 ACTCAGCTTGAAAGTCGTTCTTATATT 59.180 33.333 0.19 0.00 37.13 1.28
174 175 7.324178 ACTCAGCTTGAAAGTCGTTCTTATAT 58.676 34.615 0.19 0.00 37.13 0.86
175 176 6.688578 ACTCAGCTTGAAAGTCGTTCTTATA 58.311 36.000 0.19 0.00 37.13 0.98
176 177 5.542779 ACTCAGCTTGAAAGTCGTTCTTAT 58.457 37.500 0.19 0.00 37.13 1.73
177 178 4.945246 ACTCAGCTTGAAAGTCGTTCTTA 58.055 39.130 0.19 0.00 37.13 2.10
178 179 3.798202 ACTCAGCTTGAAAGTCGTTCTT 58.202 40.909 0.19 0.00 37.13 2.52
179 180 3.460857 ACTCAGCTTGAAAGTCGTTCT 57.539 42.857 0.19 0.00 37.13 3.01
180 181 5.847670 AATACTCAGCTTGAAAGTCGTTC 57.152 39.130 0.00 0.00 36.70 3.95
181 182 7.602644 TGATAAATACTCAGCTTGAAAGTCGTT 59.397 33.333 0.00 0.00 0.00 3.85
182 183 7.097192 TGATAAATACTCAGCTTGAAAGTCGT 58.903 34.615 0.00 0.00 0.00 4.34
183 184 7.254252 CCTGATAAATACTCAGCTTGAAAGTCG 60.254 40.741 0.00 0.00 39.04 4.18
184 185 7.550906 ACCTGATAAATACTCAGCTTGAAAGTC 59.449 37.037 0.00 0.00 39.04 3.01
185 186 7.398024 ACCTGATAAATACTCAGCTTGAAAGT 58.602 34.615 0.00 0.00 39.04 2.66
186 187 7.856145 ACCTGATAAATACTCAGCTTGAAAG 57.144 36.000 0.00 0.00 39.04 2.62
187 188 8.103305 AGAACCTGATAAATACTCAGCTTGAAA 58.897 33.333 0.00 0.00 39.04 2.69
188 189 7.624549 AGAACCTGATAAATACTCAGCTTGAA 58.375 34.615 0.00 0.00 39.04 2.69
189 190 7.187824 AGAACCTGATAAATACTCAGCTTGA 57.812 36.000 0.00 0.00 39.04 3.02
190 191 7.335422 ACAAGAACCTGATAAATACTCAGCTTG 59.665 37.037 13.11 13.11 40.44 4.01
191 192 7.398024 ACAAGAACCTGATAAATACTCAGCTT 58.602 34.615 0.00 0.00 39.04 3.74
192 193 6.951971 ACAAGAACCTGATAAATACTCAGCT 58.048 36.000 0.00 0.00 39.04 4.24
193 194 6.818644 TGACAAGAACCTGATAAATACTCAGC 59.181 38.462 0.00 0.00 39.04 4.26
194 195 8.824781 CATGACAAGAACCTGATAAATACTCAG 58.175 37.037 0.00 0.00 39.88 3.35
195 196 7.770433 CCATGACAAGAACCTGATAAATACTCA 59.230 37.037 0.00 0.00 0.00 3.41
196 197 7.227512 CCCATGACAAGAACCTGATAAATACTC 59.772 40.741 0.00 0.00 0.00 2.59
197 198 7.056635 CCCATGACAAGAACCTGATAAATACT 58.943 38.462 0.00 0.00 0.00 2.12
198 199 6.238759 GCCCATGACAAGAACCTGATAAATAC 60.239 42.308 0.00 0.00 0.00 1.89
204 205 1.637553 AGCCCATGACAAGAACCTGAT 59.362 47.619 0.00 0.00 0.00 2.90
261 262 5.123344 GGATAAAAATCAGGTACGTGCAAGT 59.877 40.000 10.83 10.83 0.00 3.16
262 263 5.123186 TGGATAAAAATCAGGTACGTGCAAG 59.877 40.000 10.71 0.00 0.00 4.01
263 264 5.004448 TGGATAAAAATCAGGTACGTGCAA 58.996 37.500 10.71 0.00 0.00 4.08
264 265 4.393680 GTGGATAAAAATCAGGTACGTGCA 59.606 41.667 10.71 0.94 0.00 4.57
265 266 4.201881 GGTGGATAAAAATCAGGTACGTGC 60.202 45.833 10.71 0.00 0.00 5.34
315 320 4.202441 CTCCAACCCCTAATCTGTCAATG 58.798 47.826 0.00 0.00 0.00 2.82
416 426 2.579787 CCTTCCTGTCGCGCTACG 60.580 66.667 5.56 1.23 45.62 3.51
418 428 3.458163 CCCCTTCCTGTCGCGCTA 61.458 66.667 5.56 0.00 0.00 4.26
465 475 2.903547 GCTTCCAAGTTTGCGGCGA 61.904 57.895 12.98 0.00 0.00 5.54
467 477 0.529555 TTTGCTTCCAAGTTTGCGGC 60.530 50.000 0.00 0.00 31.52 6.53
557 580 7.558444 AGAACTCGTGGTTTAGATTAGAGAGAT 59.442 37.037 0.00 0.00 38.41 2.75
558 581 6.885376 AGAACTCGTGGTTTAGATTAGAGAGA 59.115 38.462 0.00 0.00 38.41 3.10
561 598 6.127703 TGGAGAACTCGTGGTTTAGATTAGAG 60.128 42.308 0.00 0.00 38.41 2.43
566 603 3.367087 CGTGGAGAACTCGTGGTTTAGAT 60.367 47.826 0.00 0.00 38.41 1.98
568 605 2.325761 CGTGGAGAACTCGTGGTTTAG 58.674 52.381 0.00 0.00 38.41 1.85
684 741 7.775093 TGTGAATGGAAATGGCCTATATATAGC 59.225 37.037 13.49 9.25 0.00 2.97
781 838 0.541063 TACTGTGTGGAAGCGAGGGA 60.541 55.000 0.00 0.00 0.00 4.20
874 932 1.224592 GCAGATGGACAATCGGGGT 59.775 57.895 0.00 0.00 40.54 4.95
918 982 5.062528 AGAAGAAGAAGAAGCAGGTTTCAG 58.937 41.667 0.00 0.00 0.00 3.02
919 983 5.041191 AGAAGAAGAAGAAGCAGGTTTCA 57.959 39.130 0.00 0.00 0.00 2.69
920 984 5.762711 AGAAGAAGAAGAAGAAGCAGGTTTC 59.237 40.000 0.00 0.00 0.00 2.78
941 1005 2.032550 ACAAGACGACGACGAAGAAGAA 59.967 45.455 15.32 0.00 42.66 2.52
944 1008 2.480224 AACAAGACGACGACGAAGAA 57.520 45.000 15.32 0.00 42.66 2.52
947 1011 0.573521 GCAAACAAGACGACGACGAA 59.426 50.000 15.32 0.00 42.66 3.85
956 1020 6.305693 GGATATATCCACAGCAAACAAGAC 57.694 41.667 24.41 0.00 46.38 3.01
984 1048 0.470080 TCATCTGGTCGATCTCCCCC 60.470 60.000 0.00 0.00 0.00 5.40
985 1049 0.676736 GTCATCTGGTCGATCTCCCC 59.323 60.000 0.00 0.00 0.00 4.81
986 1050 1.339610 CAGTCATCTGGTCGATCTCCC 59.660 57.143 0.00 0.00 37.97 4.30
1041 1105 1.611419 CTGCTGTCCCATGGTGGAT 59.389 57.895 11.73 0.00 40.96 3.41
1044 1108 0.548031 ATACCTGCTGTCCCATGGTG 59.452 55.000 11.73 2.15 32.74 4.17
1045 1109 0.839946 GATACCTGCTGTCCCATGGT 59.160 55.000 11.73 0.00 35.05 3.55
1053 1117 2.223595 CGTCGATCAAGATACCTGCTGT 60.224 50.000 0.00 0.00 0.00 4.40
1056 1120 1.132588 GCGTCGATCAAGATACCTGC 58.867 55.000 0.00 0.00 0.00 4.85
1063 1127 1.335182 GAGAGATGGCGTCGATCAAGA 59.665 52.381 0.00 0.00 0.00 3.02
1064 1128 1.336440 AGAGAGATGGCGTCGATCAAG 59.664 52.381 14.09 0.00 0.00 3.02
1089 1161 0.991920 GAACAGGGGATGGGTTCTGA 59.008 55.000 0.00 0.00 38.26 3.27
1090 1162 0.034089 GGAACAGGGGATGGGTTCTG 60.034 60.000 0.00 0.00 40.48 3.02
1091 1163 0.178831 AGGAACAGGGGATGGGTTCT 60.179 55.000 0.00 0.00 40.48 3.01
1098 1170 2.637165 ACTTTCTCAGGAACAGGGGAT 58.363 47.619 0.00 0.00 0.00 3.85
1108 1180 4.068599 GTCTCCCTTGAAACTTTCTCAGG 58.931 47.826 11.05 11.05 33.22 3.86
1113 1185 3.318275 GGTTGGTCTCCCTTGAAACTTTC 59.682 47.826 0.00 0.00 0.00 2.62
1114 1186 3.296854 GGTTGGTCTCCCTTGAAACTTT 58.703 45.455 0.00 0.00 0.00 2.66
1115 1187 2.243736 TGGTTGGTCTCCCTTGAAACTT 59.756 45.455 0.00 0.00 0.00 2.66
1124 1196 2.158667 TCAAGAAACTGGTTGGTCTCCC 60.159 50.000 0.00 0.00 0.00 4.30
1125 1197 3.142174 CTCAAGAAACTGGTTGGTCTCC 58.858 50.000 0.00 0.00 0.00 3.71
1126 1198 3.142174 CCTCAAGAAACTGGTTGGTCTC 58.858 50.000 0.00 0.00 0.00 3.36
1128 1200 3.208747 TCCTCAAGAAACTGGTTGGTC 57.791 47.619 0.00 0.00 0.00 4.02
1131 1203 6.479990 GGAAAAATTCCTCAAGAAACTGGTTG 59.520 38.462 1.86 0.00 46.57 3.77
1132 1204 6.582636 GGAAAAATTCCTCAAGAAACTGGTT 58.417 36.000 1.86 0.00 46.57 3.67
1133 1205 6.161855 GGAAAAATTCCTCAAGAAACTGGT 57.838 37.500 1.86 0.00 46.57 4.00
1150 1247 1.064357 GTGAGCGGTGAAACGGAAAAA 59.936 47.619 0.00 0.00 39.89 1.94
1157 1254 2.946762 GCCTGTGAGCGGTGAAAC 59.053 61.111 0.00 0.00 0.00 2.78
1177 1274 0.323302 TCAACGATAGCAACAGGGCA 59.677 50.000 0.00 0.00 42.67 5.36
1189 1286 2.005451 GAGCAAGACAGCATCAACGAT 58.995 47.619 0.00 0.00 36.85 3.73
1210 1307 1.134068 GGGAGAGGGAGGAAAAATCGG 60.134 57.143 0.00 0.00 0.00 4.18
1212 1309 2.578480 ACAGGGAGAGGGAGGAAAAATC 59.422 50.000 0.00 0.00 0.00 2.17
1213 1310 2.310052 CACAGGGAGAGGGAGGAAAAAT 59.690 50.000 0.00 0.00 0.00 1.82
1240 1337 4.209452 CAACACTGCATTGTTTCTACGT 57.791 40.909 18.76 0.00 37.62 3.57
1328 1435 4.437390 GCTGTATGAAGAAACATCAACGGG 60.437 45.833 0.00 0.00 0.00 5.28
1348 1455 2.584418 CTCGTCCTCGGCATGCTG 60.584 66.667 21.02 21.02 37.69 4.41
1349 1456 3.842923 CCTCGTCCTCGGCATGCT 61.843 66.667 18.92 0.00 37.69 3.79
1350 1457 3.781770 CTCCTCGTCCTCGGCATGC 62.782 68.421 9.90 9.90 37.69 4.06
1394 1502 3.055602 GGAGTGTTATTCTGGTAACCGGT 60.056 47.826 0.00 0.00 34.43 5.28
1408 1516 3.126001 CTCCTTTGTGCTGGAGTGTTA 57.874 47.619 0.00 0.00 43.49 2.41
1429 1537 1.228154 GCCCCAACCGAAGAGTGTT 60.228 57.895 0.00 0.00 0.00 3.32
1432 1540 1.201429 AGATGCCCCAACCGAAGAGT 61.201 55.000 0.00 0.00 0.00 3.24
1433 1541 0.830648 TAGATGCCCCAACCGAAGAG 59.169 55.000 0.00 0.00 0.00 2.85
1434 1542 1.065709 GTTAGATGCCCCAACCGAAGA 60.066 52.381 0.00 0.00 0.00 2.87
1452 1564 1.162698 TAGACAGCACGCGACTAGTT 58.837 50.000 15.93 1.09 0.00 2.24
1503 1616 0.616111 AGACTCCAATCTCCCGTGCT 60.616 55.000 0.00 0.00 0.00 4.40
1512 1625 7.128976 GCGATTCAAATAAGAAGACTCCAATC 58.871 38.462 0.00 0.00 0.00 2.67
1515 1628 5.351465 GTGCGATTCAAATAAGAAGACTCCA 59.649 40.000 0.00 0.00 0.00 3.86
1543 1660 1.097547 AAGATATGCACTGCGTGGCC 61.098 55.000 5.96 0.00 33.64 5.36
1557 1674 6.901615 TGGGGATAAGTGGAAGAAAAGATA 57.098 37.500 0.00 0.00 0.00 1.98
1567 1684 1.668826 AGCTGTTGGGGATAAGTGGA 58.331 50.000 0.00 0.00 0.00 4.02
1653 1771 1.068588 GTCAACAAAAGCAACCCCCTC 59.931 52.381 0.00 0.00 0.00 4.30
1768 1888 3.940209 TCGACTTTTCTTAACGGCCTA 57.060 42.857 0.00 0.00 0.00 3.93
1888 2011 0.735978 TGATGATGAACGTTCGCGCT 60.736 50.000 22.48 8.23 46.04 5.92
1892 2015 3.410850 CAAGCTTGATGATGAACGTTCG 58.589 45.455 22.31 7.42 0.00 3.95
2077 2202 7.333528 TGCAAACAAATATAACCAGATCCTC 57.666 36.000 0.00 0.00 0.00 3.71
2114 2239 4.018688 TGGTCCTGAAGTAGCAGTAGTAGA 60.019 45.833 0.00 0.00 34.06 2.59
2115 2240 4.270834 TGGTCCTGAAGTAGCAGTAGTAG 58.729 47.826 0.00 0.00 34.06 2.57
2116 2241 4.311520 TGGTCCTGAAGTAGCAGTAGTA 57.688 45.455 0.00 0.00 34.06 1.82
2117 2242 3.170991 TGGTCCTGAAGTAGCAGTAGT 57.829 47.619 0.00 0.00 34.06 2.73
2126 2252 1.078848 GCGCTCATGGTCCTGAAGT 60.079 57.895 0.00 0.00 0.00 3.01
2216 2344 5.269991 TCTAACTTGTCAGGGCAGTATAGT 58.730 41.667 0.00 0.00 0.00 2.12
2217 2345 5.854010 TCTAACTTGTCAGGGCAGTATAG 57.146 43.478 0.00 0.00 0.00 1.31
2218 2346 5.661312 ACATCTAACTTGTCAGGGCAGTATA 59.339 40.000 0.00 0.00 0.00 1.47
2219 2347 4.471386 ACATCTAACTTGTCAGGGCAGTAT 59.529 41.667 0.00 0.00 0.00 2.12
2220 2348 3.838317 ACATCTAACTTGTCAGGGCAGTA 59.162 43.478 0.00 0.00 0.00 2.74
2244 2372 1.427368 AGGGGTTTTGTGGATGTAGCA 59.573 47.619 0.00 0.00 0.00 3.49
2245 2373 2.215942 AGGGGTTTTGTGGATGTAGC 57.784 50.000 0.00 0.00 0.00 3.58
2246 2374 3.496331 ACAAGGGGTTTTGTGGATGTAG 58.504 45.455 0.00 0.00 39.68 2.74
2248 2376 2.091333 AGACAAGGGGTTTTGTGGATGT 60.091 45.455 0.00 0.00 41.15 3.06
2249 2377 2.297033 CAGACAAGGGGTTTTGTGGATG 59.703 50.000 0.00 0.00 41.15 3.51
2266 2394 4.646572 AGGAGGAAACACAAGATTCAGAC 58.353 43.478 0.00 0.00 0.00 3.51
2439 2568 2.068837 TTACTTACACCGCGGTTCAG 57.931 50.000 32.11 25.41 0.00 3.02
2445 2574 1.189446 GCATCGATTACTTACACCGCG 59.811 52.381 0.00 0.00 0.00 6.46
2460 2589 1.736126 ACAAACAGAGCAGATGCATCG 59.264 47.619 20.67 16.00 45.16 3.84
2461 2590 3.499048 CAACAAACAGAGCAGATGCATC 58.501 45.455 19.37 19.37 45.16 3.91
2462 2591 2.352421 GCAACAAACAGAGCAGATGCAT 60.352 45.455 0.00 0.00 45.16 3.96
2463 2592 1.001048 GCAACAAACAGAGCAGATGCA 60.001 47.619 7.68 0.00 45.16 3.96
2464 2593 1.694639 GCAACAAACAGAGCAGATGC 58.305 50.000 0.00 0.00 42.49 3.91
2465 2594 1.265095 ACGCAACAAACAGAGCAGATG 59.735 47.619 0.00 0.00 0.00 2.90
2627 2765 8.367660 AGAGTTCAGAAACATAGTTGGATCTA 57.632 34.615 0.00 0.00 37.88 1.98
2827 2967 1.776662 TGCTACTAGCCCTACTGTGG 58.223 55.000 5.58 0.00 41.51 4.17
2956 3097 8.214722 TCGAATTCGATTTTGTTTCATTTCAG 57.785 30.769 25.96 0.00 44.22 3.02
2998 3166 5.246429 TGTTTAAGTGTTGTGGAGGGTTTTT 59.754 36.000 0.00 0.00 0.00 1.94
2999 3167 4.773149 TGTTTAAGTGTTGTGGAGGGTTTT 59.227 37.500 0.00 0.00 0.00 2.43
3000 3168 4.345854 TGTTTAAGTGTTGTGGAGGGTTT 58.654 39.130 0.00 0.00 0.00 3.27
3001 3169 3.970842 TGTTTAAGTGTTGTGGAGGGTT 58.029 40.909 0.00 0.00 0.00 4.11
3002 3170 3.655615 TGTTTAAGTGTTGTGGAGGGT 57.344 42.857 0.00 0.00 0.00 4.34
3003 3171 4.141287 TGATGTTTAAGTGTTGTGGAGGG 58.859 43.478 0.00 0.00 0.00 4.30
3004 3172 4.216257 CCTGATGTTTAAGTGTTGTGGAGG 59.784 45.833 0.00 0.00 0.00 4.30
3005 3173 4.216257 CCCTGATGTTTAAGTGTTGTGGAG 59.784 45.833 0.00 0.00 0.00 3.86
3006 3174 4.141287 CCCTGATGTTTAAGTGTTGTGGA 58.859 43.478 0.00 0.00 0.00 4.02
3007 3175 3.305335 GCCCTGATGTTTAAGTGTTGTGG 60.305 47.826 0.00 0.00 0.00 4.17
3008 3176 3.305335 GGCCCTGATGTTTAAGTGTTGTG 60.305 47.826 0.00 0.00 0.00 3.33
3009 3177 2.890945 GGCCCTGATGTTTAAGTGTTGT 59.109 45.455 0.00 0.00 0.00 3.32
3010 3178 2.890311 TGGCCCTGATGTTTAAGTGTTG 59.110 45.455 0.00 0.00 0.00 3.33
3011 3179 2.890945 GTGGCCCTGATGTTTAAGTGTT 59.109 45.455 0.00 0.00 0.00 3.32
3012 3180 2.514803 GTGGCCCTGATGTTTAAGTGT 58.485 47.619 0.00 0.00 0.00 3.55
3066 3234 7.827729 ACTTCTTTTCTTTGCGGGTATATAGTT 59.172 33.333 0.00 0.00 0.00 2.24
3067 3235 7.336396 ACTTCTTTTCTTTGCGGGTATATAGT 58.664 34.615 0.00 0.00 0.00 2.12
3068 3236 7.787725 ACTTCTTTTCTTTGCGGGTATATAG 57.212 36.000 0.00 0.00 0.00 1.31
3069 3237 7.712205 GGTACTTCTTTTCTTTGCGGGTATATA 59.288 37.037 0.00 0.00 0.00 0.86
3070 3238 6.541278 GGTACTTCTTTTCTTTGCGGGTATAT 59.459 38.462 0.00 0.00 0.00 0.86
3071 3239 5.876460 GGTACTTCTTTTCTTTGCGGGTATA 59.124 40.000 0.00 0.00 0.00 1.47
3072 3240 4.698780 GGTACTTCTTTTCTTTGCGGGTAT 59.301 41.667 0.00 0.00 0.00 2.73
3073 3241 4.067192 GGTACTTCTTTTCTTTGCGGGTA 58.933 43.478 0.00 0.00 0.00 3.69
3074 3242 2.882761 GGTACTTCTTTTCTTTGCGGGT 59.117 45.455 0.00 0.00 0.00 5.28
3075 3243 2.882137 TGGTACTTCTTTTCTTTGCGGG 59.118 45.455 0.00 0.00 0.00 6.13
3076 3244 4.215399 TGATGGTACTTCTTTTCTTTGCGG 59.785 41.667 0.00 0.00 0.00 5.69
3077 3245 5.356882 TGATGGTACTTCTTTTCTTTGCG 57.643 39.130 0.00 0.00 0.00 4.85
3078 3246 6.739112 AGTTGATGGTACTTCTTTTCTTTGC 58.261 36.000 0.00 0.00 0.00 3.68
3082 3250 9.838339 CCATATAGTTGATGGTACTTCTTTTCT 57.162 33.333 0.00 0.00 39.29 2.52
3083 3251 8.560374 GCCATATAGTTGATGGTACTTCTTTTC 58.440 37.037 3.74 0.00 44.96 2.29
3084 3252 7.502561 GGCCATATAGTTGATGGTACTTCTTTT 59.497 37.037 0.00 0.00 44.96 2.27
3085 3253 6.998673 GGCCATATAGTTGATGGTACTTCTTT 59.001 38.462 0.00 0.00 44.96 2.52
3086 3254 6.101150 TGGCCATATAGTTGATGGTACTTCTT 59.899 38.462 0.00 0.00 44.96 2.52
3087 3255 5.606749 TGGCCATATAGTTGATGGTACTTCT 59.393 40.000 0.00 0.00 44.96 2.85
3088 3256 5.865085 TGGCCATATAGTTGATGGTACTTC 58.135 41.667 0.00 0.00 44.96 3.01
3089 3257 5.904984 TGGCCATATAGTTGATGGTACTT 57.095 39.130 0.00 0.00 44.96 2.24
3090 3258 5.804446 GCATGGCCATATAGTTGATGGTACT 60.804 44.000 20.30 0.00 44.96 2.73
3091 3259 4.396166 GCATGGCCATATAGTTGATGGTAC 59.604 45.833 20.30 0.00 44.96 3.34
3092 3260 4.289410 AGCATGGCCATATAGTTGATGGTA 59.711 41.667 20.30 0.00 44.96 3.25
3093 3261 3.074985 AGCATGGCCATATAGTTGATGGT 59.925 43.478 20.30 7.03 44.96 3.55
3094 3262 3.442625 CAGCATGGCCATATAGTTGATGG 59.557 47.826 20.30 2.65 45.79 3.51
3095 3263 3.119602 GCAGCATGGCCATATAGTTGATG 60.120 47.826 20.30 16.71 35.86 3.07
3096 3264 3.087031 GCAGCATGGCCATATAGTTGAT 58.913 45.455 20.30 1.36 35.86 2.57
3097 3265 2.158638 TGCAGCATGGCCATATAGTTGA 60.159 45.455 20.30 2.64 35.86 3.18
3098 3266 2.030540 GTGCAGCATGGCCATATAGTTG 60.031 50.000 20.30 15.48 35.86 3.16
3108 3276 2.048877 GGTGTTGTGCAGCATGGC 60.049 61.111 0.00 0.00 44.44 4.40
3138 3306 1.234615 CCATGACGGTTTGCGGTTCT 61.235 55.000 0.00 0.00 0.00 3.01
3149 3317 2.993899 GTTACTGAGTTGACCATGACGG 59.006 50.000 0.00 0.00 42.50 4.79
3153 3321 5.505654 GGTGTTTGTTACTGAGTTGACCATG 60.506 44.000 0.00 0.00 0.00 3.66
3174 3342 4.988598 AACGTGCGAGGCAGGGTG 62.989 66.667 13.89 0.00 46.80 4.61
3204 3372 3.071874 TGCCGATGACCAGAAGAATTT 57.928 42.857 0.00 0.00 0.00 1.82
3233 3401 2.663808 TCATGTTTTGCAGCGTGATTG 58.336 42.857 6.01 0.00 0.00 2.67
3242 3410 3.069872 AGCCAGTTTGATCATGTTTTGCA 59.930 39.130 0.00 0.00 0.00 4.08
3245 3413 5.534207 TGAAGCCAGTTTGATCATGTTTT 57.466 34.783 0.00 0.00 0.00 2.43
3281 3476 5.278957 GCCATGTTTTCAGGTACAATGAGTT 60.279 40.000 0.00 0.00 0.00 3.01
3286 3481 5.743636 ATTGCCATGTTTTCAGGTACAAT 57.256 34.783 0.00 0.00 34.26 2.71
3291 3486 3.153919 ACGTATTGCCATGTTTTCAGGT 58.846 40.909 0.00 0.00 0.00 4.00
3292 3487 3.848272 ACGTATTGCCATGTTTTCAGG 57.152 42.857 0.00 0.00 0.00 3.86
3305 3500 3.749088 TGCAAGTGGGTTTCTACGTATTG 59.251 43.478 0.00 0.00 0.00 1.90
3314 3509 3.467374 TCCAAAATGCAAGTGGGTTTC 57.533 42.857 12.31 0.00 32.95 2.78
3361 3556 2.433436 GCCTTTACCGGCCCAATATAG 58.567 52.381 0.00 0.00 44.41 1.31
3401 3596 7.902087 AGAGTTGCTCTAATAGTCTTTTCACT 58.098 34.615 0.00 0.00 39.28 3.41
3405 3600 7.841956 TGCTAGAGTTGCTCTAATAGTCTTTT 58.158 34.615 7.22 0.00 41.74 2.27
3412 3607 4.585162 GGGTCTGCTAGAGTTGCTCTAATA 59.415 45.833 7.22 0.03 41.74 0.98
3418 3613 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
3419 3614 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
3420 3615 1.471119 TACGGGGTCTGCTAGAGTTG 58.529 55.000 0.00 0.00 0.00 3.16
3421 3616 2.226962 TTACGGGGTCTGCTAGAGTT 57.773 50.000 0.00 0.00 0.00 3.01
3422 3617 2.226962 TTTACGGGGTCTGCTAGAGT 57.773 50.000 0.00 0.00 0.00 3.24
3423 3618 3.492829 GGATTTTACGGGGTCTGCTAGAG 60.493 52.174 0.00 0.00 0.00 2.43
3424 3619 2.433239 GGATTTTACGGGGTCTGCTAGA 59.567 50.000 0.00 0.00 0.00 2.43
3425 3620 2.484947 GGGATTTTACGGGGTCTGCTAG 60.485 54.545 0.00 0.00 0.00 3.42
3426 3621 1.487558 GGGATTTTACGGGGTCTGCTA 59.512 52.381 0.00 0.00 0.00 3.49
3427 3622 0.255033 GGGATTTTACGGGGTCTGCT 59.745 55.000 0.00 0.00 0.00 4.24
3428 3623 0.034863 TGGGATTTTACGGGGTCTGC 60.035 55.000 0.00 0.00 0.00 4.26
3429 3624 2.089201 GTTGGGATTTTACGGGGTCTG 58.911 52.381 0.00 0.00 0.00 3.51
3430 3625 1.990327 AGTTGGGATTTTACGGGGTCT 59.010 47.619 0.00 0.00 0.00 3.85
3431 3626 2.362736 GAGTTGGGATTTTACGGGGTC 58.637 52.381 0.00 0.00 0.00 4.46
3432 3627 1.339342 CGAGTTGGGATTTTACGGGGT 60.339 52.381 0.00 0.00 0.00 4.95
3433 3628 1.375551 CGAGTTGGGATTTTACGGGG 58.624 55.000 0.00 0.00 0.00 5.73
3434 3629 0.730840 GCGAGTTGGGATTTTACGGG 59.269 55.000 0.00 0.00 0.00 5.28
3435 3630 1.444836 TGCGAGTTGGGATTTTACGG 58.555 50.000 0.00 0.00 0.00 4.02
3436 3631 4.331717 ACTTATGCGAGTTGGGATTTTACG 59.668 41.667 0.00 0.00 0.00 3.18
3437 3632 5.123344 ACACTTATGCGAGTTGGGATTTTAC 59.877 40.000 0.00 0.00 0.00 2.01
3438 3633 5.250200 ACACTTATGCGAGTTGGGATTTTA 58.750 37.500 0.00 0.00 0.00 1.52
3439 3634 4.079253 ACACTTATGCGAGTTGGGATTTT 58.921 39.130 0.00 0.00 0.00 1.82
3440 3635 3.686016 ACACTTATGCGAGTTGGGATTT 58.314 40.909 0.00 0.00 0.00 2.17
3441 3636 3.350219 ACACTTATGCGAGTTGGGATT 57.650 42.857 0.00 0.00 0.00 3.01
3442 3637 3.350219 AACACTTATGCGAGTTGGGAT 57.650 42.857 0.00 0.00 0.00 3.85
3443 3638 2.851263 AACACTTATGCGAGTTGGGA 57.149 45.000 0.00 0.00 0.00 4.37
3444 3639 3.564511 CAAAACACTTATGCGAGTTGGG 58.435 45.455 0.00 0.00 0.00 4.12
3445 3640 2.979813 GCAAAACACTTATGCGAGTTGG 59.020 45.455 0.00 0.00 0.00 3.77
3446 3641 3.626977 TGCAAAACACTTATGCGAGTTG 58.373 40.909 0.00 0.00 42.91 3.16
3447 3642 3.315191 ACTGCAAAACACTTATGCGAGTT 59.685 39.130 0.00 0.00 42.91 3.01
3448 3643 2.878406 ACTGCAAAACACTTATGCGAGT 59.122 40.909 0.00 0.00 42.91 4.18
3449 3644 3.542712 ACTGCAAAACACTTATGCGAG 57.457 42.857 0.00 0.00 42.91 5.03
3450 3645 3.605922 CGAACTGCAAAACACTTATGCGA 60.606 43.478 0.00 0.00 42.91 5.10
3451 3646 2.651703 CGAACTGCAAAACACTTATGCG 59.348 45.455 0.00 0.00 42.91 4.73
3452 3647 2.979813 CCGAACTGCAAAACACTTATGC 59.020 45.455 0.00 0.00 40.45 3.14
3453 3648 3.564511 CCCGAACTGCAAAACACTTATG 58.435 45.455 0.00 0.00 0.00 1.90
3454 3649 2.556622 CCCCGAACTGCAAAACACTTAT 59.443 45.455 0.00 0.00 0.00 1.73
3455 3650 1.950909 CCCCGAACTGCAAAACACTTA 59.049 47.619 0.00 0.00 0.00 2.24
3456 3651 0.744281 CCCCGAACTGCAAAACACTT 59.256 50.000 0.00 0.00 0.00 3.16
3457 3652 0.106918 TCCCCGAACTGCAAAACACT 60.107 50.000 0.00 0.00 0.00 3.55
3458 3653 0.741915 TTCCCCGAACTGCAAAACAC 59.258 50.000 0.00 0.00 0.00 3.32
3459 3654 1.475403 TTTCCCCGAACTGCAAAACA 58.525 45.000 0.00 0.00 0.00 2.83
3460 3655 2.159156 ACTTTTCCCCGAACTGCAAAAC 60.159 45.455 0.00 0.00 0.00 2.43
3461 3656 2.104170 ACTTTTCCCCGAACTGCAAAA 58.896 42.857 0.00 0.00 0.00 2.44
3462 3657 1.407258 CACTTTTCCCCGAACTGCAAA 59.593 47.619 0.00 0.00 0.00 3.68
3463 3658 1.028905 CACTTTTCCCCGAACTGCAA 58.971 50.000 0.00 0.00 0.00 4.08
3464 3659 0.106918 ACACTTTTCCCCGAACTGCA 60.107 50.000 0.00 0.00 0.00 4.41
3465 3660 0.310854 CACACTTTTCCCCGAACTGC 59.689 55.000 0.00 0.00 0.00 4.40
3466 3661 1.675552 ACACACTTTTCCCCGAACTG 58.324 50.000 0.00 0.00 0.00 3.16
3467 3662 3.408634 CATACACACTTTTCCCCGAACT 58.591 45.455 0.00 0.00 0.00 3.01
3468 3663 2.095415 GCATACACACTTTTCCCCGAAC 60.095 50.000 0.00 0.00 0.00 3.95
3469 3664 2.156098 GCATACACACTTTTCCCCGAA 58.844 47.619 0.00 0.00 0.00 4.30
3470 3665 1.072489 TGCATACACACTTTTCCCCGA 59.928 47.619 0.00 0.00 0.00 5.14
3471 3666 1.468520 CTGCATACACACTTTTCCCCG 59.531 52.381 0.00 0.00 0.00 5.73
3472 3667 1.818674 CCTGCATACACACTTTTCCCC 59.181 52.381 0.00 0.00 0.00 4.81
3473 3668 1.202348 GCCTGCATACACACTTTTCCC 59.798 52.381 0.00 0.00 0.00 3.97
3474 3669 1.202348 GGCCTGCATACACACTTTTCC 59.798 52.381 0.00 0.00 0.00 3.13
3475 3670 1.135689 CGGCCTGCATACACACTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
3476 3671 0.881118 CGGCCTGCATACACACTTTT 59.119 50.000 0.00 0.00 0.00 2.27
3477 3672 0.960364 CCGGCCTGCATACACACTTT 60.960 55.000 0.00 0.00 0.00 2.66
3478 3673 1.377202 CCGGCCTGCATACACACTT 60.377 57.895 0.00 0.00 0.00 3.16
3479 3674 2.268920 CCGGCCTGCATACACACT 59.731 61.111 0.00 0.00 0.00 3.55
3480 3675 3.508840 GCCGGCCTGCATACACAC 61.509 66.667 18.11 0.00 0.00 3.82
3500 3695 3.775654 CTGGGTCTCACCTCGCCC 61.776 72.222 0.00 0.00 38.64 6.13
3501 3696 2.997897 ACTGGGTCTCACCTCGCC 60.998 66.667 0.00 0.00 38.64 5.54
3502 3697 2.262915 CACTGGGTCTCACCTCGC 59.737 66.667 0.00 0.00 38.64 5.03
3503 3698 1.587054 GTCACTGGGTCTCACCTCG 59.413 63.158 0.00 0.00 38.64 4.63
3504 3699 1.587054 CGTCACTGGGTCTCACCTC 59.413 63.158 0.00 0.00 38.64 3.85
3505 3700 1.908793 CCGTCACTGGGTCTCACCT 60.909 63.158 0.00 0.00 38.64 4.00
3506 3701 2.207924 ACCGTCACTGGGTCTCACC 61.208 63.158 0.00 0.00 37.60 4.02
3507 3702 1.006102 CACCGTCACTGGGTCTCAC 60.006 63.158 0.00 0.00 34.97 3.51
3508 3703 1.456892 ACACCGTCACTGGGTCTCA 60.457 57.895 0.00 0.00 34.97 3.27
3509 3704 1.289380 GACACCGTCACTGGGTCTC 59.711 63.158 0.00 0.00 34.97 3.36
3510 3705 2.207924 GGACACCGTCACTGGGTCT 61.208 63.158 1.24 0.00 34.97 3.85
3511 3706 2.207924 AGGACACCGTCACTGGGTC 61.208 63.158 0.00 0.00 34.97 4.46
3512 3707 2.122989 AGGACACCGTCACTGGGT 60.123 61.111 0.00 0.00 38.65 4.51
3513 3708 2.343758 CAGGACACCGTCACTGGG 59.656 66.667 0.00 0.00 33.68 4.45
3514 3709 2.207229 TCCAGGACACCGTCACTGG 61.207 63.158 18.22 18.22 44.57 4.00
3515 3710 1.006102 GTCCAGGACACCGTCACTG 60.006 63.158 15.43 1.90 33.68 3.66
3516 3711 0.111832 TAGTCCAGGACACCGTCACT 59.888 55.000 22.31 0.50 34.60 3.41
3517 3712 0.526662 CTAGTCCAGGACACCGTCAC 59.473 60.000 22.31 0.00 34.60 3.67
3518 3713 2.957060 CTAGTCCAGGACACCGTCA 58.043 57.895 22.31 0.00 34.60 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.