Multiple sequence alignment - TraesCS2D01G057700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G057700 chr2D 100.000 3722 0 0 1 3722 22953044 22956765 0.000000e+00 6874.0
1 TraesCS2D01G057700 chr2D 95.319 3247 128 14 489 3722 22937356 22940591 0.000000e+00 5132.0
2 TraesCS2D01G057700 chr2D 92.442 344 25 1 1 344 22937006 22937348 1.310000e-134 490.0
3 TraesCS2D01G057700 chr2D 100.000 243 0 0 3823 4065 22956866 22957108 2.230000e-122 449.0
4 TraesCS2D01G057700 chr2D 81.053 95 14 4 771 864 11170523 11170432 5.640000e-09 73.1
5 TraesCS2D01G057700 chr2A 91.498 247 16 3 3823 4065 24527110 24527355 6.510000e-88 335.0
6 TraesCS2D01G057700 chr2A 84.286 140 15 6 3823 3956 24527174 24527312 3.300000e-26 130.0
7 TraesCS2D01G057700 chr2B 89.300 243 19 1 3823 4065 37434520 37434285 8.540000e-77 298.0
8 TraesCS2D01G057700 chr2B 87.081 209 24 3 3823 4030 37434650 37434444 2.440000e-57 233.0
9 TraesCS2D01G057700 chr2B 80.986 284 49 5 1181 1461 17390233 17389952 1.900000e-53 220.0
10 TraesCS2D01G057700 chr1A 94.406 143 7 1 344 486 478263343 478263202 6.840000e-53 219.0
11 TraesCS2D01G057700 chr6B 91.781 146 10 2 342 486 140454133 140453989 6.890000e-48 202.0
12 TraesCS2D01G057700 chr6B 71.065 432 97 21 1585 1999 2887196 2887616 3.370000e-11 80.5
13 TraesCS2D01G057700 chr6B 97.059 34 1 0 3345 3378 527586485 527586452 1.580000e-04 58.4
14 TraesCS2D01G057700 chr1B 84.615 78 11 1 1675 1752 512684162 512684086 4.360000e-10 76.8
15 TraesCS2D01G057700 chr1D 90.909 55 5 0 3344 3398 312469290 312469344 1.570000e-09 75.0
16 TraesCS2D01G057700 chr1D 94.118 34 2 0 3345 3378 275620972 275620939 7.000000e-03 52.8
17 TraesCS2D01G057700 chr3A 89.286 56 6 0 3347 3402 623054922 623054867 2.030000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G057700 chr2D 22953044 22957108 4064 False 3661.5 6874 100.0000 1 4065 2 chr2D.!!$F2 4064
1 TraesCS2D01G057700 chr2D 22937006 22940591 3585 False 2811.0 5132 93.8805 1 3722 2 chr2D.!!$F1 3721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 760 0.033228 CTCATCACCTCCTCATCGCC 59.967 60.0 0.00 0.0 0.00 5.54 F
1005 1014 0.322816 TGCAAAGGAGAGCCATGGAC 60.323 55.0 18.40 8.7 36.29 4.02 F
1930 1940 0.392998 GTGGGTACATGCCACCAGAG 60.393 60.0 16.63 0.0 37.84 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2009 0.538287 GGCCTGTATTCCCAGCCATC 60.538 60.0 0.00 0.0 32.37 3.51 R
2794 2804 0.110823 GTGCGCGGTACTTGTTCTTG 60.111 55.0 8.83 0.0 0.00 3.02 R
3905 3919 0.250640 GGAGCTATGGGCATCAGGTG 60.251 60.0 0.00 0.0 44.79 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.137675 GTACCGGTACCAAGATGGACC 59.862 57.143 30.84 4.13 40.96 4.46
53 54 1.192428 GTACCAAGATGGACCGGAGT 58.808 55.000 9.46 0.00 40.96 3.85
66 67 3.139077 GACCGGAGTTGACAATGAAAGT 58.861 45.455 9.46 0.00 0.00 2.66
73 74 5.979517 GGAGTTGACAATGAAAGTTTTGAGG 59.020 40.000 0.00 0.00 0.00 3.86
85 86 6.154363 TGAAAGTTTTGAGGAAGTGGTGAAAT 59.846 34.615 0.00 0.00 0.00 2.17
86 87 6.544928 AAGTTTTGAGGAAGTGGTGAAATT 57.455 33.333 0.00 0.00 0.00 1.82
87 88 6.544928 AGTTTTGAGGAAGTGGTGAAATTT 57.455 33.333 0.00 0.00 0.00 1.82
160 161 3.418684 AGGCACTTTTTACGGATGAGT 57.581 42.857 0.00 0.00 27.25 3.41
163 164 5.310451 AGGCACTTTTTACGGATGAGTAAA 58.690 37.500 0.00 0.00 42.68 2.01
188 189 1.375013 GAACGCGAACTAGGGGCAA 60.375 57.895 15.93 0.00 0.00 4.52
266 267 7.758076 ACATCGAAAGTCATTATCGTTTAGACA 59.242 33.333 0.00 0.00 37.79 3.41
345 346 9.968870 TTCCAATACGTAAATTGCTTACTTTTT 57.031 25.926 0.00 0.00 38.22 1.94
366 367 5.902613 TTTTGAGGGAATGACATCATGAC 57.097 39.130 0.00 0.00 36.56 3.06
367 368 3.183793 TGAGGGAATGACATCATGACG 57.816 47.619 0.00 0.00 36.56 4.35
368 369 2.158914 TGAGGGAATGACATCATGACGG 60.159 50.000 0.00 0.00 36.56 4.79
369 370 2.103094 GAGGGAATGACATCATGACGGA 59.897 50.000 0.00 0.00 36.56 4.69
370 371 2.707791 AGGGAATGACATCATGACGGAT 59.292 45.455 0.00 0.00 36.56 4.18
371 372 3.137176 AGGGAATGACATCATGACGGATT 59.863 43.478 0.00 0.00 36.56 3.01
372 373 4.347876 AGGGAATGACATCATGACGGATTA 59.652 41.667 0.00 0.00 36.56 1.75
373 374 5.013495 AGGGAATGACATCATGACGGATTAT 59.987 40.000 0.00 0.00 36.56 1.28
374 375 6.213397 AGGGAATGACATCATGACGGATTATA 59.787 38.462 0.00 0.00 36.56 0.98
375 376 7.050377 GGGAATGACATCATGACGGATTATAT 58.950 38.462 0.00 0.00 36.56 0.86
376 377 7.554118 GGGAATGACATCATGACGGATTATATT 59.446 37.037 0.00 0.00 36.56 1.28
377 378 8.393366 GGAATGACATCATGACGGATTATATTG 58.607 37.037 0.00 0.00 36.56 1.90
378 379 9.154847 GAATGACATCATGACGGATTATATTGA 57.845 33.333 0.00 0.00 36.56 2.57
379 380 9.676861 AATGACATCATGACGGATTATATTGAT 57.323 29.630 0.00 0.00 36.56 2.57
380 381 9.676861 ATGACATCATGACGGATTATATTGATT 57.323 29.630 0.00 0.00 34.83 2.57
381 382 9.506018 TGACATCATGACGGATTATATTGATTT 57.494 29.630 0.00 0.00 0.00 2.17
382 383 9.764870 GACATCATGACGGATTATATTGATTTG 57.235 33.333 0.00 0.00 0.00 2.32
383 384 8.733458 ACATCATGACGGATTATATTGATTTGG 58.267 33.333 0.00 0.00 0.00 3.28
384 385 7.686438 TCATGACGGATTATATTGATTTGGG 57.314 36.000 0.00 0.00 0.00 4.12
385 386 6.658816 TCATGACGGATTATATTGATTTGGGG 59.341 38.462 0.00 0.00 0.00 4.96
386 387 6.194285 TGACGGATTATATTGATTTGGGGA 57.806 37.500 0.00 0.00 0.00 4.81
387 388 6.606069 TGACGGATTATATTGATTTGGGGAA 58.394 36.000 0.00 0.00 0.00 3.97
388 389 7.063593 TGACGGATTATATTGATTTGGGGAAA 58.936 34.615 0.00 0.00 0.00 3.13
389 390 7.561722 TGACGGATTATATTGATTTGGGGAAAA 59.438 33.333 0.00 0.00 0.00 2.29
390 391 8.312669 ACGGATTATATTGATTTGGGGAAAAA 57.687 30.769 0.00 0.00 0.00 1.94
411 412 7.559590 AAAAAGATACATCATCAGCCAGTAC 57.440 36.000 0.00 0.00 35.96 2.73
412 413 5.876651 AAGATACATCATCAGCCAGTACA 57.123 39.130 0.00 0.00 35.96 2.90
413 414 6.430962 AAGATACATCATCAGCCAGTACAT 57.569 37.500 0.00 0.00 35.96 2.29
414 415 6.035368 AGATACATCATCAGCCAGTACATC 57.965 41.667 0.00 0.00 35.96 3.06
415 416 5.541484 AGATACATCATCAGCCAGTACATCA 59.459 40.000 0.00 0.00 35.96 3.07
416 417 4.492494 ACATCATCAGCCAGTACATCAA 57.508 40.909 0.00 0.00 0.00 2.57
417 418 4.194640 ACATCATCAGCCAGTACATCAAC 58.805 43.478 0.00 0.00 0.00 3.18
418 419 4.080695 ACATCATCAGCCAGTACATCAACT 60.081 41.667 0.00 0.00 0.00 3.16
419 420 5.129320 ACATCATCAGCCAGTACATCAACTA 59.871 40.000 0.00 0.00 0.00 2.24
420 421 5.675684 TCATCAGCCAGTACATCAACTAA 57.324 39.130 0.00 0.00 0.00 2.24
421 422 5.664457 TCATCAGCCAGTACATCAACTAAG 58.336 41.667 0.00 0.00 0.00 2.18
422 423 5.422012 TCATCAGCCAGTACATCAACTAAGA 59.578 40.000 0.00 0.00 0.00 2.10
423 424 5.738619 TCAGCCAGTACATCAACTAAGAA 57.261 39.130 0.00 0.00 0.00 2.52
424 425 5.479306 TCAGCCAGTACATCAACTAAGAAC 58.521 41.667 0.00 0.00 0.00 3.01
425 426 5.246203 TCAGCCAGTACATCAACTAAGAACT 59.754 40.000 0.00 0.00 0.00 3.01
426 427 5.578727 CAGCCAGTACATCAACTAAGAACTC 59.421 44.000 0.00 0.00 0.00 3.01
427 428 5.246203 AGCCAGTACATCAACTAAGAACTCA 59.754 40.000 0.00 0.00 0.00 3.41
428 429 5.578727 GCCAGTACATCAACTAAGAACTCAG 59.421 44.000 0.00 0.00 0.00 3.35
429 430 6.692486 CCAGTACATCAACTAAGAACTCAGT 58.308 40.000 0.00 0.00 0.00 3.41
430 431 7.155328 CCAGTACATCAACTAAGAACTCAGTT 58.845 38.462 0.00 0.00 35.38 3.16
437 438 6.718454 CAACTAAGAACTCAGTTGGATCTG 57.282 41.667 9.32 0.00 45.08 2.90
438 439 4.826556 ACTAAGAACTCAGTTGGATCTGC 58.173 43.478 0.00 0.00 35.63 4.26
439 440 2.777832 AGAACTCAGTTGGATCTGCC 57.222 50.000 0.00 0.00 35.63 4.85
440 441 1.066573 AGAACTCAGTTGGATCTGCCG 60.067 52.381 0.00 0.00 40.66 5.69
441 442 0.687354 AACTCAGTTGGATCTGCCGT 59.313 50.000 0.00 0.00 40.66 5.68
442 443 0.247736 ACTCAGTTGGATCTGCCGTC 59.752 55.000 0.00 0.00 40.66 4.79
443 444 0.460987 CTCAGTTGGATCTGCCGTCC 60.461 60.000 0.00 0.00 40.66 4.79
444 445 1.191489 TCAGTTGGATCTGCCGTCCA 61.191 55.000 0.00 0.00 43.77 4.02
445 446 1.021390 CAGTTGGATCTGCCGTCCAC 61.021 60.000 1.69 0.00 45.05 4.02
446 447 1.003839 GTTGGATCTGCCGTCCACA 60.004 57.895 1.69 0.00 45.05 4.17
447 448 1.003839 TTGGATCTGCCGTCCACAC 60.004 57.895 1.69 0.00 45.05 3.82
448 449 1.763546 TTGGATCTGCCGTCCACACA 61.764 55.000 1.69 0.00 45.05 3.72
449 450 1.003839 GGATCTGCCGTCCACACAA 60.004 57.895 0.00 0.00 35.76 3.33
450 451 0.392998 GGATCTGCCGTCCACACAAT 60.393 55.000 0.00 0.00 35.76 2.71
451 452 1.453155 GATCTGCCGTCCACACAATT 58.547 50.000 0.00 0.00 0.00 2.32
452 453 1.131126 GATCTGCCGTCCACACAATTG 59.869 52.381 3.24 3.24 0.00 2.32
453 454 0.179032 TCTGCCGTCCACACAATTGT 60.179 50.000 4.92 4.92 35.84 2.71
454 455 0.667993 CTGCCGTCCACACAATTGTT 59.332 50.000 8.77 0.00 31.66 2.83
455 456 1.066908 CTGCCGTCCACACAATTGTTT 59.933 47.619 8.77 0.00 31.66 2.83
456 457 1.202348 TGCCGTCCACACAATTGTTTG 60.202 47.619 16.24 16.24 38.86 2.93
457 458 1.867698 GCCGTCCACACAATTGTTTGG 60.868 52.381 30.02 30.02 44.93 3.28
458 459 1.269517 CCGTCCACACAATTGTTTGGG 60.270 52.381 33.05 22.09 44.00 4.12
459 460 1.864565 GTCCACACAATTGTTTGGGC 58.135 50.000 33.05 30.44 44.00 5.36
460 461 1.137872 GTCCACACAATTGTTTGGGCA 59.862 47.619 33.23 18.77 46.61 5.36
461 462 2.045524 TCCACACAATTGTTTGGGCAT 58.954 42.857 33.05 0.00 44.00 4.40
462 463 2.036992 TCCACACAATTGTTTGGGCATC 59.963 45.455 33.05 0.00 44.00 3.91
463 464 2.224233 CCACACAATTGTTTGGGCATCA 60.224 45.455 28.79 0.00 41.06 3.07
464 465 3.464907 CACACAATTGTTTGGGCATCAA 58.535 40.909 15.54 0.00 40.07 2.57
465 466 3.248125 CACACAATTGTTTGGGCATCAAC 59.752 43.478 15.54 0.00 40.07 3.18
466 467 2.807392 CACAATTGTTTGGGCATCAACC 59.193 45.455 8.77 0.00 37.15 3.77
467 468 2.437281 ACAATTGTTTGGGCATCAACCA 59.563 40.909 4.92 0.00 37.15 3.67
468 469 2.807392 CAATTGTTTGGGCATCAACCAC 59.193 45.455 0.00 0.00 37.82 4.16
469 470 0.755686 TTGTTTGGGCATCAACCACC 59.244 50.000 0.00 0.00 37.82 4.61
470 471 0.397675 TGTTTGGGCATCAACCACCA 60.398 50.000 0.00 0.00 37.82 4.17
471 472 0.975887 GTTTGGGCATCAACCACCAT 59.024 50.000 0.00 0.00 37.82 3.55
472 473 2.175202 GTTTGGGCATCAACCACCATA 58.825 47.619 0.00 0.00 37.82 2.74
473 474 1.846007 TTGGGCATCAACCACCATAC 58.154 50.000 0.00 0.00 37.82 2.39
474 475 0.998928 TGGGCATCAACCACCATACT 59.001 50.000 0.00 0.00 31.83 2.12
475 476 2.200955 TGGGCATCAACCACCATACTA 58.799 47.619 0.00 0.00 31.83 1.82
476 477 2.172505 TGGGCATCAACCACCATACTAG 59.827 50.000 0.00 0.00 31.83 2.57
477 478 2.222027 GGCATCAACCACCATACTAGC 58.778 52.381 0.00 0.00 0.00 3.42
478 479 2.158755 GGCATCAACCACCATACTAGCT 60.159 50.000 0.00 0.00 0.00 3.32
479 480 3.071023 GGCATCAACCACCATACTAGCTA 59.929 47.826 0.00 0.00 0.00 3.32
480 481 4.263068 GGCATCAACCACCATACTAGCTAT 60.263 45.833 0.00 0.00 0.00 2.97
481 482 4.932200 GCATCAACCACCATACTAGCTATC 59.068 45.833 0.00 0.00 0.00 2.08
482 483 5.511373 GCATCAACCACCATACTAGCTATCA 60.511 44.000 0.00 0.00 0.00 2.15
483 484 5.531122 TCAACCACCATACTAGCTATCAC 57.469 43.478 0.00 0.00 0.00 3.06
484 485 4.959839 TCAACCACCATACTAGCTATCACA 59.040 41.667 0.00 0.00 0.00 3.58
485 486 5.602561 TCAACCACCATACTAGCTATCACAT 59.397 40.000 0.00 0.00 0.00 3.21
486 487 6.780522 TCAACCACCATACTAGCTATCACATA 59.219 38.462 0.00 0.00 0.00 2.29
487 488 7.289084 TCAACCACCATACTAGCTATCACATAA 59.711 37.037 0.00 0.00 0.00 1.90
488 489 7.612065 ACCACCATACTAGCTATCACATAAA 57.388 36.000 0.00 0.00 0.00 1.40
489 490 8.207350 ACCACCATACTAGCTATCACATAAAT 57.793 34.615 0.00 0.00 0.00 1.40
490 491 8.660435 ACCACCATACTAGCTATCACATAAATT 58.340 33.333 0.00 0.00 0.00 1.82
501 502 9.998106 AGCTATCACATAAATTAACGAATAGGT 57.002 29.630 0.00 0.00 0.00 3.08
544 545 3.497103 AAGCAGGTTAACGGGTAAAGT 57.503 42.857 0.00 0.00 0.00 2.66
546 547 4.622260 AGCAGGTTAACGGGTAAAGTAA 57.378 40.909 0.00 0.00 0.00 2.24
547 548 4.318332 AGCAGGTTAACGGGTAAAGTAAC 58.682 43.478 0.00 0.00 0.00 2.50
548 549 3.123453 GCAGGTTAACGGGTAAAGTAACG 59.877 47.826 0.00 0.00 0.00 3.18
625 630 8.475331 TCTAACTATTGATTTGAACGGTCTTC 57.525 34.615 0.33 0.00 0.00 2.87
631 636 2.589798 TTTGAACGGTCTTCGAGTGT 57.410 45.000 0.33 0.00 42.43 3.55
639 644 2.351111 CGGTCTTCGAGTGTACCTAGTC 59.649 54.545 0.00 0.00 42.43 2.59
651 659 7.086230 AGTGTACCTAGTCTTCTTAATGTCG 57.914 40.000 0.00 0.00 0.00 4.35
707 715 8.035394 AGAGTCAACGTCACATTAATGACTTAT 58.965 33.333 22.16 6.28 45.33 1.73
732 740 5.622346 TTTTCTTTTAGGCCAACCAACAT 57.378 34.783 5.01 0.00 39.06 2.71
736 744 3.517296 TTTAGGCCAACCAACATCTCA 57.483 42.857 5.01 0.00 39.06 3.27
752 760 0.033228 CTCATCACCTCCTCATCGCC 59.967 60.000 0.00 0.00 0.00 5.54
772 780 2.415893 CCGGATTTAAAGGTTGCTGCTG 60.416 50.000 0.00 0.00 0.00 4.41
773 781 2.610433 GGATTTAAAGGTTGCTGCTGC 58.390 47.619 8.89 8.89 40.20 5.25
822 831 5.414765 AGAAAACAACACGATTATCCCTTCC 59.585 40.000 0.00 0.00 0.00 3.46
847 856 4.285260 TCTTTCTCCAGGTTAGTGTTACCC 59.715 45.833 0.00 0.00 36.27 3.69
856 865 4.765339 AGGTTAGTGTTACCCAATCTTTGC 59.235 41.667 0.00 0.00 36.27 3.68
859 868 6.379386 GTTAGTGTTACCCAATCTTTGCTTC 58.621 40.000 0.00 0.00 0.00 3.86
922 931 5.710099 TGTGGACAAAGGATATTTTCTGTCC 59.290 40.000 15.74 15.74 43.33 4.02
925 934 7.638444 TGGACAAAGGATATTTTCTGTCCATA 58.362 34.615 19.07 5.72 46.32 2.74
972 981 4.202212 TGTTTCAGGAAGAAGATCGTCACA 60.202 41.667 11.35 1.27 37.57 3.58
975 984 6.471233 TTCAGGAAGAAGATCGTCACATAT 57.529 37.500 11.35 0.00 0.00 1.78
999 1008 2.338785 GCTGGTGCAAAGGAGAGCC 61.339 63.158 0.00 0.00 39.41 4.70
1005 1014 0.322816 TGCAAAGGAGAGCCATGGAC 60.323 55.000 18.40 8.70 36.29 4.02
1074 1083 2.281484 GAAGTTGGGAGCGGTGCA 60.281 61.111 8.76 0.00 0.00 4.57
1105 1114 7.402862 AGCTGTTTACAGGGTAATGAATACTT 58.597 34.615 11.55 0.00 43.94 2.24
1160 1170 9.915629 GTTGTCAAATTAATGTTACCATTACCA 57.084 29.630 0.00 0.00 41.95 3.25
1162 1172 8.247562 TGTCAAATTAATGTTACCATTACCAGC 58.752 33.333 0.00 0.00 41.95 4.85
1163 1173 8.466798 GTCAAATTAATGTTACCATTACCAGCT 58.533 33.333 0.00 0.00 41.95 4.24
1166 1176 7.745620 ATTAATGTTACCATTACCAGCTAGC 57.254 36.000 6.62 6.62 41.95 3.42
1179 1189 2.924290 CCAGCTAGCTAAGTTCGACAAC 59.076 50.000 18.86 0.00 0.00 3.32
1202 1212 3.246226 GCTAACAAGTGATCATACAGGCG 59.754 47.826 0.00 0.00 0.00 5.52
1211 1221 1.948104 TCATACAGGCGGTGCATAAC 58.052 50.000 0.00 0.00 0.00 1.89
1271 1281 6.319658 TGCAAGGACTTGATGATAAGGAATTC 59.680 38.462 15.76 0.00 42.93 2.17
1326 1336 8.295288 TCTTTCACAAAAACGTTGTAAGGTTAA 58.705 29.630 0.00 0.00 36.13 2.01
1337 1347 6.081693 CGTTGTAAGGTTAATTGGTTACTGC 58.918 40.000 0.00 0.00 0.00 4.40
1346 1356 8.052748 AGGTTAATTGGTTACTGCTATGAATCA 58.947 33.333 0.00 0.00 0.00 2.57
1370 1380 6.019640 CACAAGAAAAATTCGTTGAGCACAAT 60.020 34.615 0.00 0.00 38.32 2.71
1376 1386 0.605319 TCGTTGAGCACAATGGGGAC 60.605 55.000 14.91 0.00 41.66 4.46
1415 1425 1.512926 TGGAGCGAGTTCTTTGCTTC 58.487 50.000 0.00 2.03 46.85 3.86
1528 1538 3.309682 ACGATTCCGCATCTTTACATGTG 59.690 43.478 9.11 0.00 39.95 3.21
1578 1588 9.770097 CTCTCTATTTTCCTGTAATTGCAGATA 57.230 33.333 23.34 12.31 38.70 1.98
1587 1597 6.150976 TCCTGTAATTGCAGATAAACCTTGTG 59.849 38.462 23.34 3.81 38.70 3.33
1600 1610 4.918810 AACCTTGTGAACTTGATTGGAC 57.081 40.909 0.00 0.00 0.00 4.02
1745 1755 5.541868 TCCCAAAATTGCAGATCTTGGTTTA 59.458 36.000 14.26 2.17 35.73 2.01
1763 1773 5.010617 TGGTTTATCCAAGCTTGTTTCTTCC 59.989 40.000 24.35 18.23 44.12 3.46
1816 1826 6.932356 AGGAACATAGTAAGTTGATGCATG 57.068 37.500 2.46 0.00 0.00 4.06
1828 1838 1.135141 TGATGCATGTTTTAAGCCCGC 60.135 47.619 2.46 0.00 0.00 6.13
1896 1906 3.727726 CACTAACCATATCCGTGATGCA 58.272 45.455 0.00 0.00 0.00 3.96
1900 1910 6.036408 CACTAACCATATCCGTGATGCATATG 59.964 42.308 0.00 0.00 0.00 1.78
1909 1919 4.812626 TCCGTGATGCATATGATATCATGC 59.187 41.667 25.44 22.47 46.21 4.06
1930 1940 0.392998 GTGGGTACATGCCACCAGAG 60.393 60.000 16.63 0.00 37.84 3.35
1971 1981 8.853077 TTCATATCTGAGAAGTTTGATGTGTT 57.147 30.769 0.00 0.00 32.44 3.32
1978 1988 5.525012 TGAGAAGTTTGATGTGTTCAGTCTG 59.475 40.000 0.00 0.00 35.27 3.51
1999 2009 9.367160 AGTCTGGGGGTCATAATTATAAAAATG 57.633 33.333 0.00 0.00 0.00 2.32
2000 2010 9.362151 GTCTGGGGGTCATAATTATAAAAATGA 57.638 33.333 0.00 8.35 0.00 2.57
2005 2015 8.815912 GGGGTCATAATTATAAAAATGATGGCT 58.184 33.333 13.30 0.00 31.49 4.75
2006 2016 9.643693 GGGTCATAATTATAAAAATGATGGCTG 57.356 33.333 13.30 0.00 31.49 4.85
2043 2053 2.627699 TCAGCTGTTTTGAAATGTCCCC 59.372 45.455 14.67 0.00 0.00 4.81
2045 2055 3.037549 AGCTGTTTTGAAATGTCCCCAA 58.962 40.909 0.00 0.00 0.00 4.12
2071 2081 5.824624 AGAGTTCATTGAGCTTGTGAGAAAA 59.175 36.000 4.42 0.00 0.00 2.29
2152 2162 1.806542 CCTTATTCGTGCTTGCACACT 59.193 47.619 22.97 10.66 38.45 3.55
2170 2180 7.842982 TGCACACTATGTACCACTTTCTAATA 58.157 34.615 0.00 0.00 0.00 0.98
2171 2181 8.482943 TGCACACTATGTACCACTTTCTAATAT 58.517 33.333 0.00 0.00 0.00 1.28
2209 2219 9.069082 TCATTTTTCGAATCCAGGTAAGTAAAA 57.931 29.630 0.00 0.00 0.00 1.52
2210 2220 9.124807 CATTTTTCGAATCCAGGTAAGTAAAAC 57.875 33.333 0.00 0.00 0.00 2.43
2309 2319 7.529880 TTGAGATAGCATTGCGATGTATATG 57.470 36.000 15.45 0.00 35.63 1.78
2382 2392 4.276839 AGGAACTGGAGGTTGAGACCAAT 61.277 47.826 0.00 0.00 43.72 3.16
2404 2414 8.872845 CCAATAAAATTGCACTACCTTTTGATC 58.127 33.333 0.00 0.00 0.00 2.92
2439 2449 9.694137 GACCTAATTCTGAAGGTATGTATGTAC 57.306 37.037 0.00 0.00 46.22 2.90
2440 2450 9.209048 ACCTAATTCTGAAGGTATGTATGTACA 57.791 33.333 0.00 0.00 44.40 2.90
2445 2455 7.712204 TCTGAAGGTATGTATGTACAAGTGA 57.288 36.000 0.00 0.00 39.99 3.41
2448 2458 8.584063 TGAAGGTATGTATGTACAAGTGACTA 57.416 34.615 0.00 0.00 39.99 2.59
2467 2477 5.250543 TGACTATTCTGAAGGGATGGACAAA 59.749 40.000 0.00 0.00 0.00 2.83
2468 2478 5.749462 ACTATTCTGAAGGGATGGACAAAG 58.251 41.667 0.00 0.00 0.00 2.77
2567 2577 2.915349 TCTACACTAGTAGCACTCCGG 58.085 52.381 0.00 0.00 45.90 5.14
2686 2696 0.964860 CCAATGATGTGGCGGTGGAA 60.965 55.000 0.00 0.00 0.00 3.53
2794 2804 3.059461 TCGCGTTCAACATAAAGGTCAAC 60.059 43.478 5.77 0.00 0.00 3.18
2825 2835 4.789075 GCGCACAGCCCAGCATTG 62.789 66.667 0.30 0.00 40.81 2.82
2908 2918 0.311790 CACCCAACATGCAGTGTCAC 59.688 55.000 0.00 0.00 41.14 3.67
2911 2921 0.235665 CCAACATGCAGTGTCACGAC 59.764 55.000 0.00 0.00 41.14 4.34
3047 3057 6.073819 GGTGAAACTGCCAATTGTTTATGTTC 60.074 38.462 4.43 2.05 36.64 3.18
3080 3090 7.036220 GGATGGATAATAACATCTACCTGTCG 58.964 42.308 0.00 0.00 42.34 4.35
3145 3155 8.713737 TGAATCGAGTAGTACGCTATATATGT 57.286 34.615 2.45 0.00 0.00 2.29
3442 3454 6.322491 GTGGAGGTAATGCAGAAAAATACAC 58.678 40.000 0.00 0.00 0.00 2.90
3488 3500 6.414408 AGAAATGCATACTCGTCTTCAAAG 57.586 37.500 0.00 0.00 0.00 2.77
3661 3673 5.952347 ATCCAAACTAGGTATTCGGAACT 57.048 39.130 0.00 0.00 0.00 3.01
3855 3869 4.910585 GGCACCCGACGCCCATAG 62.911 72.222 0.00 0.00 44.22 2.23
3857 3871 3.849951 CACCCGACGCCCATAGCT 61.850 66.667 0.00 0.00 40.39 3.32
3858 3872 3.537874 ACCCGACGCCCATAGCTC 61.538 66.667 0.00 0.00 40.39 4.09
3859 3873 4.301027 CCCGACGCCCATAGCTCC 62.301 72.222 0.00 0.00 40.39 4.70
3860 3874 4.301027 CCGACGCCCATAGCTCCC 62.301 72.222 0.00 0.00 40.39 4.30
3861 3875 3.536917 CGACGCCCATAGCTCCCA 61.537 66.667 0.00 0.00 40.39 4.37
3862 3876 2.109181 GACGCCCATAGCTCCCAC 59.891 66.667 0.00 0.00 40.39 4.61
3863 3877 3.792053 GACGCCCATAGCTCCCACG 62.792 68.421 0.00 0.00 40.39 4.94
3864 3878 3.849951 CGCCCATAGCTCCCACGT 61.850 66.667 0.00 0.00 40.39 4.49
3865 3879 2.203070 GCCCATAGCTCCCACGTG 60.203 66.667 9.08 9.08 38.99 4.49
3866 3880 2.505982 CCCATAGCTCCCACGTGG 59.494 66.667 28.26 28.26 0.00 4.94
3867 3881 2.203070 CCATAGCTCCCACGTGGC 60.203 66.667 29.75 17.85 0.00 5.01
3868 3882 2.586079 CATAGCTCCCACGTGGCG 60.586 66.667 29.75 21.65 0.00 5.69
3869 3883 3.849951 ATAGCTCCCACGTGGCGG 61.850 66.667 29.75 22.45 0.00 6.13
3897 3911 4.864334 GCCCATGGCTCCCACGAG 62.864 72.222 6.09 0.00 46.69 4.18
3923 3937 3.319135 CACCTGATGCCCATAGCTC 57.681 57.895 0.00 0.00 44.23 4.09
3924 3938 0.250640 CACCTGATGCCCATAGCTCC 60.251 60.000 0.00 0.00 44.23 4.70
3925 3939 1.377994 CCTGATGCCCATAGCTCCC 59.622 63.158 0.00 0.00 44.23 4.30
3926 3940 1.421346 CCTGATGCCCATAGCTCCCA 61.421 60.000 0.00 0.00 44.23 4.37
3927 3941 0.250640 CTGATGCCCATAGCTCCCAC 60.251 60.000 0.00 0.00 44.23 4.61
3928 3942 1.302033 GATGCCCATAGCTCCCACG 60.302 63.158 0.00 0.00 44.23 4.94
3929 3943 2.044806 GATGCCCATAGCTCCCACGT 62.045 60.000 0.00 0.00 44.23 4.49
3930 3944 2.203070 GCCCATAGCTCCCACGTG 60.203 66.667 9.08 9.08 38.99 4.49
3931 3945 2.505982 CCCATAGCTCCCACGTGG 59.494 66.667 28.26 28.26 0.00 4.94
3932 3946 2.203070 CCATAGCTCCCACGTGGC 60.203 66.667 29.75 17.85 0.00 5.01
3933 3947 2.584064 CATAGCTCCCACGTGGCA 59.416 61.111 29.75 14.89 0.00 4.92
3934 3948 1.522355 CATAGCTCCCACGTGGCAG 60.522 63.158 29.75 25.81 0.00 4.85
3935 3949 2.735772 ATAGCTCCCACGTGGCAGG 61.736 63.158 29.75 20.02 0.00 4.85
3941 3955 4.704833 CCACGTGGCAGGGACCAG 62.705 72.222 24.02 0.00 41.46 4.00
3942 3956 3.941188 CACGTGGCAGGGACCAGT 61.941 66.667 7.95 0.00 41.46 4.00
3943 3957 3.941188 ACGTGGCAGGGACCAGTG 61.941 66.667 12.33 0.00 41.46 3.66
3951 3965 4.740822 GGGACCAGTGCGGCCATT 62.741 66.667 2.24 0.00 39.03 3.16
3952 3966 3.443045 GGACCAGTGCGGCCATTG 61.443 66.667 2.24 0.00 39.03 2.82
3953 3967 4.120331 GACCAGTGCGGCCATTGC 62.120 66.667 2.24 0.00 39.03 3.56
3954 3968 4.666253 ACCAGTGCGGCCATTGCT 62.666 61.111 2.24 0.00 39.03 3.91
3955 3969 3.818787 CCAGTGCGGCCATTGCTC 61.819 66.667 2.24 0.00 37.74 4.26
3956 3970 3.818787 CAGTGCGGCCATTGCTCC 61.819 66.667 2.24 0.00 37.74 4.70
3959 3973 4.445710 TGCGGCCATTGCTCCCAT 62.446 61.111 2.24 0.00 37.74 4.00
3960 3974 3.908081 GCGGCCATTGCTCCCATG 61.908 66.667 2.24 0.00 37.74 3.66
3961 3975 2.124193 CGGCCATTGCTCCCATGA 60.124 61.111 2.24 0.00 37.74 3.07
3962 3976 2.191513 CGGCCATTGCTCCCATGAG 61.192 63.158 2.24 0.00 41.84 2.90
3970 3984 2.187946 CTCCCATGAGCCACCGAC 59.812 66.667 0.00 0.00 0.00 4.79
3971 3985 2.606213 TCCCATGAGCCACCGACA 60.606 61.111 0.00 0.00 0.00 4.35
3972 3986 2.436646 CCCATGAGCCACCGACAC 60.437 66.667 0.00 0.00 0.00 3.67
3973 3987 2.436646 CCATGAGCCACCGACACC 60.437 66.667 0.00 0.00 0.00 4.16
3974 3988 2.436646 CATGAGCCACCGACACCC 60.437 66.667 0.00 0.00 0.00 4.61
3975 3989 4.082523 ATGAGCCACCGACACCCG 62.083 66.667 0.00 0.00 38.18 5.28
3985 3999 4.910585 GACACCCGGCGCCCATAG 62.911 72.222 23.46 11.60 0.00 2.23
3992 4006 4.937431 GGCGCCCATAGCTCCCAC 62.937 72.222 18.11 0.00 40.77 4.61
3993 4007 4.175337 GCGCCCATAGCTCCCACA 62.175 66.667 0.00 0.00 40.39 4.17
3994 4008 2.109799 CGCCCATAGCTCCCACAG 59.890 66.667 0.00 0.00 40.39 3.66
3995 4009 2.512896 GCCCATAGCTCCCACAGG 59.487 66.667 0.00 0.00 38.99 4.00
3996 4010 2.072487 GCCCATAGCTCCCACAGGA 61.072 63.158 0.00 0.00 41.08 3.86
3997 4011 1.832912 CCCATAGCTCCCACAGGAC 59.167 63.158 0.00 0.00 37.19 3.85
3998 4012 1.443407 CCATAGCTCCCACAGGACG 59.557 63.158 0.00 0.00 37.19 4.79
3999 4013 1.443407 CATAGCTCCCACAGGACGG 59.557 63.158 0.00 0.00 37.19 4.79
4000 4014 2.435693 ATAGCTCCCACAGGACGGC 61.436 63.158 0.00 0.00 37.19 5.68
4026 4040 3.171987 GCACACATGGCTCTCACG 58.828 61.111 0.00 0.00 0.00 4.35
4027 4041 1.374631 GCACACATGGCTCTCACGA 60.375 57.895 0.00 0.00 0.00 4.35
4028 4042 1.357258 GCACACATGGCTCTCACGAG 61.357 60.000 0.00 0.00 40.35 4.18
4039 4053 3.791973 CTCTCACGAGCATTACTCCTT 57.208 47.619 0.00 0.00 43.01 3.36
4040 4054 3.701241 CTCTCACGAGCATTACTCCTTC 58.299 50.000 0.00 0.00 43.01 3.46
4041 4055 3.089284 TCTCACGAGCATTACTCCTTCA 58.911 45.455 0.00 0.00 43.01 3.02
4042 4056 3.119459 TCTCACGAGCATTACTCCTTCAC 60.119 47.826 0.00 0.00 43.01 3.18
4043 4057 1.920574 CACGAGCATTACTCCTTCACG 59.079 52.381 0.00 0.00 43.01 4.35
4044 4058 1.135083 ACGAGCATTACTCCTTCACGG 60.135 52.381 0.00 0.00 43.01 4.94
4045 4059 1.802880 CGAGCATTACTCCTTCACGGG 60.803 57.143 0.00 0.00 43.01 5.28
4046 4060 0.107654 AGCATTACTCCTTCACGGGC 60.108 55.000 0.00 0.00 0.00 6.13
4047 4061 1.429148 GCATTACTCCTTCACGGGCG 61.429 60.000 0.00 0.00 0.00 6.13
4048 4062 0.174845 CATTACTCCTTCACGGGCGA 59.825 55.000 0.00 0.00 0.00 5.54
4049 4063 0.175073 ATTACTCCTTCACGGGCGAC 59.825 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.401738 ACACTCAGTCCCCAACATGG 59.598 55.000 0.00 0.00 37.25 3.66
34 35 1.192428 ACTCCGGTCCATCTTGGTAC 58.808 55.000 0.00 0.00 39.03 3.34
48 49 5.577835 TCAAAACTTTCATTGTCAACTCCG 58.422 37.500 0.00 0.00 0.00 4.63
53 54 7.035004 CACTTCCTCAAAACTTTCATTGTCAA 58.965 34.615 0.00 0.00 0.00 3.18
122 123 7.928307 AGTGCCTTGGCTATAACATAATATG 57.072 36.000 13.18 0.00 0.00 1.78
138 139 3.502211 ACTCATCCGTAAAAAGTGCCTTG 59.498 43.478 0.00 0.00 0.00 3.61
140 141 3.418684 ACTCATCCGTAAAAAGTGCCT 57.581 42.857 0.00 0.00 0.00 4.75
149 150 8.170553 GCGTTCTTTTATTTTACTCATCCGTAA 58.829 33.333 0.00 0.00 0.00 3.18
160 161 6.092533 CCCCTAGTTCGCGTTCTTTTATTTTA 59.907 38.462 5.77 0.00 0.00 1.52
163 164 3.937079 CCCCTAGTTCGCGTTCTTTTATT 59.063 43.478 5.77 0.00 0.00 1.40
173 174 3.195698 GCTTGCCCCTAGTTCGCG 61.196 66.667 0.00 0.00 0.00 5.87
255 256 7.872993 TCTTCTTGACTTTCATGTCTAAACGAT 59.127 33.333 0.00 0.00 37.79 3.73
344 345 4.395854 CGTCATGATGTCATTCCCTCAAAA 59.604 41.667 6.77 0.00 33.61 2.44
345 346 3.940852 CGTCATGATGTCATTCCCTCAAA 59.059 43.478 6.77 0.00 33.61 2.69
346 347 3.534554 CGTCATGATGTCATTCCCTCAA 58.465 45.455 6.77 0.00 33.61 3.02
347 348 2.158914 CCGTCATGATGTCATTCCCTCA 60.159 50.000 13.81 0.00 33.61 3.86
348 349 2.103094 TCCGTCATGATGTCATTCCCTC 59.897 50.000 13.81 0.00 33.61 4.30
351 352 8.393366 CAATATAATCCGTCATGATGTCATTCC 58.607 37.037 13.81 0.00 33.61 3.01
352 353 9.154847 TCAATATAATCCGTCATGATGTCATTC 57.845 33.333 13.81 0.00 33.61 2.67
353 354 9.676861 ATCAATATAATCCGTCATGATGTCATT 57.323 29.630 13.81 12.71 33.61 2.57
355 356 9.506018 AAATCAATATAATCCGTCATGATGTCA 57.494 29.630 13.81 0.44 0.00 3.58
357 358 8.733458 CCAAATCAATATAATCCGTCATGATGT 58.267 33.333 13.81 0.00 0.00 3.06
358 359 8.186163 CCCAAATCAATATAATCCGTCATGATG 58.814 37.037 8.03 8.03 0.00 3.07
360 361 6.658816 CCCCAAATCAATATAATCCGTCATGA 59.341 38.462 0.00 0.00 0.00 3.07
361 362 6.658816 TCCCCAAATCAATATAATCCGTCATG 59.341 38.462 0.00 0.00 0.00 3.07
362 363 6.789268 TCCCCAAATCAATATAATCCGTCAT 58.211 36.000 0.00 0.00 0.00 3.06
363 364 6.194285 TCCCCAAATCAATATAATCCGTCA 57.806 37.500 0.00 0.00 0.00 4.35
364 365 7.519032 TTTCCCCAAATCAATATAATCCGTC 57.481 36.000 0.00 0.00 0.00 4.79
365 366 7.906199 TTTTCCCCAAATCAATATAATCCGT 57.094 32.000 0.00 0.00 0.00 4.69
387 388 7.112122 TGTACTGGCTGATGATGTATCTTTTT 58.888 34.615 0.00 0.00 36.71 1.94
388 389 6.653020 TGTACTGGCTGATGATGTATCTTTT 58.347 36.000 0.00 0.00 36.71 2.27
389 390 6.239217 TGTACTGGCTGATGATGTATCTTT 57.761 37.500 0.00 0.00 36.71 2.52
390 391 5.876651 TGTACTGGCTGATGATGTATCTT 57.123 39.130 0.00 0.00 36.71 2.40
391 392 5.541484 TGATGTACTGGCTGATGATGTATCT 59.459 40.000 0.00 0.00 36.71 1.98
392 393 5.787380 TGATGTACTGGCTGATGATGTATC 58.213 41.667 0.00 0.00 36.29 2.24
393 394 5.813513 TGATGTACTGGCTGATGATGTAT 57.186 39.130 0.00 0.00 0.00 2.29
394 395 5.129320 AGTTGATGTACTGGCTGATGATGTA 59.871 40.000 0.00 0.00 0.00 2.29
395 396 4.080695 AGTTGATGTACTGGCTGATGATGT 60.081 41.667 0.00 0.00 0.00 3.06
396 397 4.449131 AGTTGATGTACTGGCTGATGATG 58.551 43.478 0.00 0.00 0.00 3.07
397 398 4.767578 AGTTGATGTACTGGCTGATGAT 57.232 40.909 0.00 0.00 0.00 2.45
398 399 5.422012 TCTTAGTTGATGTACTGGCTGATGA 59.578 40.000 0.00 0.00 0.00 2.92
399 400 5.664457 TCTTAGTTGATGTACTGGCTGATG 58.336 41.667 0.00 0.00 0.00 3.07
400 401 5.939764 TCTTAGTTGATGTACTGGCTGAT 57.060 39.130 0.00 0.00 0.00 2.90
401 402 5.246203 AGTTCTTAGTTGATGTACTGGCTGA 59.754 40.000 0.00 0.00 0.00 4.26
402 403 5.482908 AGTTCTTAGTTGATGTACTGGCTG 58.517 41.667 0.00 0.00 0.00 4.85
403 404 5.246203 TGAGTTCTTAGTTGATGTACTGGCT 59.754 40.000 0.00 0.00 0.00 4.75
404 405 5.479306 TGAGTTCTTAGTTGATGTACTGGC 58.521 41.667 0.00 0.00 0.00 4.85
405 406 6.692486 ACTGAGTTCTTAGTTGATGTACTGG 58.308 40.000 0.00 0.00 0.00 4.00
415 416 5.241662 GCAGATCCAACTGAGTTCTTAGTT 58.758 41.667 0.00 4.52 39.94 2.24
416 417 4.323104 GGCAGATCCAACTGAGTTCTTAGT 60.323 45.833 0.00 0.00 39.94 2.24
417 418 4.187694 GGCAGATCCAACTGAGTTCTTAG 58.812 47.826 0.00 0.00 39.94 2.18
418 419 3.368427 CGGCAGATCCAACTGAGTTCTTA 60.368 47.826 0.00 0.00 39.94 2.10
419 420 2.613977 CGGCAGATCCAACTGAGTTCTT 60.614 50.000 0.00 0.00 39.94 2.52
420 421 1.066573 CGGCAGATCCAACTGAGTTCT 60.067 52.381 0.00 0.00 39.94 3.01
421 422 1.338200 ACGGCAGATCCAACTGAGTTC 60.338 52.381 0.00 0.00 39.94 3.01
422 423 0.687354 ACGGCAGATCCAACTGAGTT 59.313 50.000 0.00 0.00 39.94 3.01
423 424 0.247736 GACGGCAGATCCAACTGAGT 59.752 55.000 0.00 0.00 39.94 3.41
424 425 0.460987 GGACGGCAGATCCAACTGAG 60.461 60.000 0.00 0.00 39.94 3.35
425 426 1.191489 TGGACGGCAGATCCAACTGA 61.191 55.000 0.00 0.00 43.43 3.41
426 427 1.296392 TGGACGGCAGATCCAACTG 59.704 57.895 0.00 0.00 43.43 3.16
427 428 3.805928 TGGACGGCAGATCCAACT 58.194 55.556 0.00 0.00 43.43 3.16
430 431 1.763546 TTGTGTGGACGGCAGATCCA 61.764 55.000 0.00 4.55 44.20 3.41
431 432 0.392998 ATTGTGTGGACGGCAGATCC 60.393 55.000 0.00 0.00 36.70 3.36
432 433 1.131126 CAATTGTGTGGACGGCAGATC 59.869 52.381 0.00 0.00 0.00 2.75
433 434 1.167851 CAATTGTGTGGACGGCAGAT 58.832 50.000 0.00 0.00 0.00 2.90
434 435 0.179032 ACAATTGTGTGGACGGCAGA 60.179 50.000 11.07 0.00 36.31 4.26
435 436 0.667993 AACAATTGTGTGGACGGCAG 59.332 50.000 12.82 0.00 38.27 4.85
436 437 1.107114 AAACAATTGTGTGGACGGCA 58.893 45.000 12.82 0.00 38.27 5.69
437 438 1.486439 CAAACAATTGTGTGGACGGC 58.514 50.000 19.46 0.00 38.27 5.68
443 444 3.109044 TGATGCCCAAACAATTGTGTG 57.891 42.857 20.14 20.14 38.27 3.82
444 445 3.465871 GTTGATGCCCAAACAATTGTGT 58.534 40.909 12.82 2.91 40.75 3.72
445 446 2.807392 GGTTGATGCCCAAACAATTGTG 59.193 45.455 12.82 0.00 42.02 3.33
446 447 3.124578 GGTTGATGCCCAAACAATTGT 57.875 42.857 4.92 4.92 42.02 2.71
452 453 0.975887 ATGGTGGTTGATGCCCAAAC 59.024 50.000 0.00 0.00 42.75 2.93
453 454 2.175202 GTATGGTGGTTGATGCCCAAA 58.825 47.619 0.00 0.00 36.36 3.28
454 455 1.357420 AGTATGGTGGTTGATGCCCAA 59.643 47.619 0.00 0.00 32.72 4.12
455 456 0.998928 AGTATGGTGGTTGATGCCCA 59.001 50.000 0.00 0.00 0.00 5.36
456 457 2.851195 CTAGTATGGTGGTTGATGCCC 58.149 52.381 0.00 0.00 0.00 5.36
457 458 2.158755 AGCTAGTATGGTGGTTGATGCC 60.159 50.000 0.00 0.00 0.00 4.40
458 459 3.199880 AGCTAGTATGGTGGTTGATGC 57.800 47.619 0.00 0.00 0.00 3.91
459 460 5.928839 GTGATAGCTAGTATGGTGGTTGATG 59.071 44.000 0.00 0.00 0.00 3.07
460 461 5.602561 TGTGATAGCTAGTATGGTGGTTGAT 59.397 40.000 0.00 0.00 0.00 2.57
461 462 4.959839 TGTGATAGCTAGTATGGTGGTTGA 59.040 41.667 0.00 0.00 0.00 3.18
462 463 5.276461 TGTGATAGCTAGTATGGTGGTTG 57.724 43.478 0.00 0.00 0.00 3.77
463 464 7.612065 TTATGTGATAGCTAGTATGGTGGTT 57.388 36.000 0.00 0.00 0.00 3.67
464 465 7.612065 TTTATGTGATAGCTAGTATGGTGGT 57.388 36.000 0.00 0.00 0.00 4.16
475 476 9.998106 ACCTATTCGTTAATTTATGTGATAGCT 57.002 29.630 0.00 0.00 0.00 3.32
479 480 8.349983 GGCAACCTATTCGTTAATTTATGTGAT 58.650 33.333 0.00 0.00 0.00 3.06
480 481 7.337184 TGGCAACCTATTCGTTAATTTATGTGA 59.663 33.333 0.00 0.00 0.00 3.58
481 482 7.476667 TGGCAACCTATTCGTTAATTTATGTG 58.523 34.615 0.00 0.00 0.00 3.21
482 483 7.554835 TCTGGCAACCTATTCGTTAATTTATGT 59.445 33.333 0.00 0.00 0.00 2.29
483 484 7.925993 TCTGGCAACCTATTCGTTAATTTATG 58.074 34.615 0.00 0.00 0.00 1.90
484 485 7.990886 TCTCTGGCAACCTATTCGTTAATTTAT 59.009 33.333 0.00 0.00 0.00 1.40
485 486 7.332557 TCTCTGGCAACCTATTCGTTAATTTA 58.667 34.615 0.00 0.00 0.00 1.40
486 487 6.177610 TCTCTGGCAACCTATTCGTTAATTT 58.822 36.000 0.00 0.00 0.00 1.82
487 488 5.741011 TCTCTGGCAACCTATTCGTTAATT 58.259 37.500 0.00 0.00 0.00 1.40
488 489 5.353394 TCTCTGGCAACCTATTCGTTAAT 57.647 39.130 0.00 0.00 0.00 1.40
489 490 4.811969 TCTCTGGCAACCTATTCGTTAA 57.188 40.909 0.00 0.00 0.00 2.01
490 491 4.811969 TTCTCTGGCAACCTATTCGTTA 57.188 40.909 0.00 0.00 0.00 3.18
491 492 3.695830 TTCTCTGGCAACCTATTCGTT 57.304 42.857 0.00 0.00 0.00 3.85
492 493 3.452627 AGATTCTCTGGCAACCTATTCGT 59.547 43.478 0.00 0.00 0.00 3.85
493 494 3.806521 CAGATTCTCTGGCAACCTATTCG 59.193 47.826 0.00 0.00 40.71 3.34
604 609 5.475719 TCGAAGACCGTTCAAATCAATAGT 58.524 37.500 0.00 0.00 39.75 2.12
625 630 7.086230 ACATTAAGAAGACTAGGTACACTCG 57.914 40.000 0.00 0.00 0.00 4.18
631 636 4.951715 TGCCGACATTAAGAAGACTAGGTA 59.048 41.667 0.00 0.00 0.00 3.08
651 659 1.134907 CATTGGAGGAAGCAATGTGCC 60.135 52.381 0.00 0.00 46.52 5.01
732 740 1.035923 GCGATGAGGAGGTGATGAGA 58.964 55.000 0.00 0.00 0.00 3.27
736 744 2.502492 CCGGCGATGAGGAGGTGAT 61.502 63.158 9.30 0.00 0.00 3.06
752 760 2.867429 CAGCAGCAACCTTTAAATCCG 58.133 47.619 0.00 0.00 0.00 4.18
822 831 5.875359 GGTAACACTAACCTGGAGAAAGATG 59.125 44.000 0.00 0.00 33.97 2.90
847 856 9.635520 AAGAACTAATGAATGAAGCAAAGATTG 57.364 29.630 0.00 0.00 0.00 2.67
925 934 9.471702 ACAGAATCACAGAAATAATCTTCCAAT 57.528 29.630 0.00 0.00 35.73 3.16
972 981 0.324552 TTTGCACCAGCCAGGCATAT 60.325 50.000 15.80 0.00 43.14 1.78
975 984 2.913578 CTTTGCACCAGCCAGGCA 60.914 61.111 15.80 0.00 43.14 4.75
1005 1014 7.388460 ACTCTTAATCAAATGGAGCTCAAAG 57.612 36.000 17.19 0.00 0.00 2.77
1047 1056 2.554462 GCTCCCAACTTCTTGGTTCTTC 59.446 50.000 0.00 0.00 45.22 2.87
1074 1083 5.968676 TTACCCTGTAAACAGCTCCATAT 57.031 39.130 4.53 0.00 42.47 1.78
1151 1161 4.441634 CGAACTTAGCTAGCTGGTAATGGT 60.442 45.833 27.68 7.93 37.89 3.55
1155 1165 3.760151 TGTCGAACTTAGCTAGCTGGTAA 59.240 43.478 27.68 12.69 37.15 2.85
1157 1167 2.168496 TGTCGAACTTAGCTAGCTGGT 58.832 47.619 27.68 21.06 0.00 4.00
1160 1170 2.864968 CGTTGTCGAACTTAGCTAGCT 58.135 47.619 23.12 23.12 39.71 3.32
1161 1171 1.320852 GCGTTGTCGAACTTAGCTAGC 59.679 52.381 6.62 6.62 39.71 3.42
1162 1172 2.864968 AGCGTTGTCGAACTTAGCTAG 58.135 47.619 0.00 0.00 39.71 3.42
1163 1173 4.161333 GTTAGCGTTGTCGAACTTAGCTA 58.839 43.478 6.74 6.74 39.71 3.32
1166 1176 4.443394 ACTTGTTAGCGTTGTCGAACTTAG 59.557 41.667 0.00 0.00 39.71 2.18
1179 1189 3.246226 GCCTGTATGATCACTTGTTAGCG 59.754 47.826 0.00 0.00 0.00 4.26
1202 1212 0.539986 TCTCTTCCCCGTTATGCACC 59.460 55.000 0.00 0.00 0.00 5.01
1211 1221 0.250234 TCACAGCAATCTCTTCCCCG 59.750 55.000 0.00 0.00 0.00 5.73
1303 1313 8.861101 CAATTAACCTTACAACGTTTTTGTGAA 58.139 29.630 0.00 0.00 34.11 3.18
1313 1323 6.072893 AGCAGTAACCAATTAACCTTACAACG 60.073 38.462 0.00 0.00 0.00 4.10
1326 1336 7.112122 TCTTGTGATTCATAGCAGTAACCAAT 58.888 34.615 0.00 0.00 0.00 3.16
1337 1347 9.611284 TCAACGAATTTTTCTTGTGATTCATAG 57.389 29.630 0.00 0.00 0.00 2.23
1346 1356 4.992688 TGTGCTCAACGAATTTTTCTTGT 58.007 34.783 0.00 0.00 0.00 3.16
1370 1380 1.868713 TAGCACGAATTAGGTCCCCA 58.131 50.000 0.00 0.00 0.00 4.96
1376 1386 5.297547 TCCATAGCTTTAGCACGAATTAGG 58.702 41.667 4.33 0.00 45.16 2.69
1401 1411 6.067669 GCATATATTCGAAGCAAAGAACTCG 58.932 40.000 3.35 0.00 0.00 4.18
1415 1425 2.159787 GCTTCCACGCTGCATATATTCG 60.160 50.000 0.00 0.00 0.00 3.34
1489 1499 8.500773 GCGGAATCGTTTATATATCTTGGAAAA 58.499 33.333 0.00 0.00 38.89 2.29
1513 1523 6.574832 GCATATGTTACACATGTAAAGATGCG 59.425 38.462 20.00 9.13 41.58 4.73
1528 1538 5.508994 GGCTTATTTGTGGGGCATATGTTAC 60.509 44.000 4.29 0.00 0.00 2.50
1534 1544 2.513738 AGAGGCTTATTTGTGGGGCATA 59.486 45.455 0.00 0.00 0.00 3.14
1578 1588 4.709397 TGTCCAATCAAGTTCACAAGGTTT 59.291 37.500 0.00 0.00 0.00 3.27
1581 1591 4.097741 TGTTGTCCAATCAAGTTCACAAGG 59.902 41.667 0.00 0.00 0.00 3.61
1587 1597 7.592938 TCATAACATGTTGTCCAATCAAGTTC 58.407 34.615 21.42 0.00 0.00 3.01
1721 1731 3.509442 ACCAAGATCTGCAATTTTGGGA 58.491 40.909 22.90 4.61 41.96 4.37
1745 1755 3.565307 TGTGGAAGAAACAAGCTTGGAT 58.435 40.909 29.18 17.69 0.00 3.41
1763 1773 8.437360 TCACCTCTGCTTTATATGTTATTGTG 57.563 34.615 0.00 0.00 0.00 3.33
1816 1826 4.514545 GCATAAATTGCGGGCTTAAAAC 57.485 40.909 0.00 0.00 42.54 2.43
1859 1869 8.807948 ATGGTTAGTGCAATACAAATAGAACT 57.192 30.769 0.00 0.00 0.00 3.01
1896 1906 6.625532 TGTACCCACTGCATGATATCATAT 57.374 37.500 17.77 1.95 34.26 1.78
1900 1910 3.438087 GCATGTACCCACTGCATGATATC 59.562 47.826 0.00 0.00 43.76 1.63
1957 1967 4.023707 CCCAGACTGAACACATCAAACTTC 60.024 45.833 3.32 0.00 37.67 3.01
1971 1981 7.699709 TTTATAATTATGACCCCCAGACTGA 57.300 36.000 8.28 0.00 0.00 3.41
1978 1988 8.040727 GCCATCATTTTTATAATTATGACCCCC 58.959 37.037 8.28 0.97 30.51 5.40
1999 2009 0.538287 GGCCTGTATTCCCAGCCATC 60.538 60.000 0.00 0.00 32.37 3.51
2000 2010 1.288508 TGGCCTGTATTCCCAGCCAT 61.289 55.000 3.32 0.00 35.29 4.40
2005 2015 1.212688 CTGACATGGCCTGTATTCCCA 59.787 52.381 3.32 0.00 38.54 4.37
2006 2016 1.972872 CTGACATGGCCTGTATTCCC 58.027 55.000 3.32 0.00 38.54 3.97
2020 2030 3.068024 GGGACATTTCAAAACAGCTGACA 59.932 43.478 23.35 0.00 0.00 3.58
2043 2053 5.824429 TCACAAGCTCAATGAACTCTTTTG 58.176 37.500 0.00 0.00 0.00 2.44
2045 2055 5.371526 TCTCACAAGCTCAATGAACTCTTT 58.628 37.500 0.00 0.00 0.00 2.52
2071 2081 7.387673 TCATGTTTGTTGTATGAATCGAGAACT 59.612 33.333 0.00 0.00 0.00 3.01
2170 2180 5.953183 TCGAAAAATGAGCATGCAAAGTAT 58.047 33.333 21.98 0.00 0.00 2.12
2171 2181 5.369685 TCGAAAAATGAGCATGCAAAGTA 57.630 34.783 21.98 0.92 0.00 2.24
2191 2201 5.935789 TCCAAGTTTTACTTACCTGGATTCG 59.064 40.000 0.00 0.00 36.03 3.34
2209 2219 2.026449 CCTGCATCTTCTCCTTCCAAGT 60.026 50.000 0.00 0.00 0.00 3.16
2210 2220 2.641305 CCTGCATCTTCTCCTTCCAAG 58.359 52.381 0.00 0.00 0.00 3.61
2285 2295 6.036408 GCATATACATCGCAATGCTATCTCAA 59.964 38.462 2.94 0.00 41.16 3.02
2298 2308 3.511699 TCGATCCTTGCATATACATCGC 58.488 45.455 8.40 0.00 34.49 4.58
2299 2309 6.366061 TCTTTTCGATCCTTGCATATACATCG 59.634 38.462 0.00 0.00 35.54 3.84
2309 2319 3.753797 AGGTCTTTCTTTTCGATCCTTGC 59.246 43.478 0.00 0.00 0.00 4.01
2340 2350 6.331369 TCCTCCAGTTCATGAACAATTTTC 57.669 37.500 33.92 11.04 43.47 2.29
2341 2351 6.324770 AGTTCCTCCAGTTCATGAACAATTTT 59.675 34.615 33.92 15.14 43.47 1.82
2351 2361 1.912043 CCTCCAGTTCCTCCAGTTCAT 59.088 52.381 0.00 0.00 0.00 2.57
2382 2392 6.207810 ACCGATCAAAAGGTAGTGCAATTTTA 59.792 34.615 0.00 0.00 39.30 1.52
2387 2397 3.071479 GACCGATCAAAAGGTAGTGCAA 58.929 45.455 0.00 0.00 41.51 4.08
2413 2423 9.694137 GTACATACATACCTTCAGAATTAGGTC 57.306 37.037 0.76 0.00 43.58 3.85
2439 2449 5.104776 TCCATCCCTTCAGAATAGTCACTTG 60.105 44.000 0.00 0.00 0.00 3.16
2440 2450 5.032846 TCCATCCCTTCAGAATAGTCACTT 58.967 41.667 0.00 0.00 0.00 3.16
2445 2455 5.749462 CTTTGTCCATCCCTTCAGAATAGT 58.251 41.667 0.00 0.00 0.00 2.12
2448 2458 3.359950 GCTTTGTCCATCCCTTCAGAAT 58.640 45.455 0.00 0.00 0.00 2.40
2467 2477 3.011517 AGGGTGCATCTTCGGGCT 61.012 61.111 0.00 0.00 0.00 5.19
2468 2478 2.514824 GAGGGTGCATCTTCGGGC 60.515 66.667 0.00 0.00 0.00 6.13
2567 2577 9.442047 ACTGTATAGATTGCCTATTTCATAAGC 57.558 33.333 0.00 0.00 38.87 3.09
2618 2628 6.663093 AGAACCAATTAGTGTGGCAAATCATA 59.337 34.615 0.00 0.00 40.02 2.15
2619 2629 5.481473 AGAACCAATTAGTGTGGCAAATCAT 59.519 36.000 0.00 0.00 40.02 2.45
2620 2630 4.832266 AGAACCAATTAGTGTGGCAAATCA 59.168 37.500 0.00 0.00 40.02 2.57
2621 2631 5.391312 AGAACCAATTAGTGTGGCAAATC 57.609 39.130 0.00 0.00 40.02 2.17
2622 2632 5.806654 AAGAACCAATTAGTGTGGCAAAT 57.193 34.783 0.00 0.00 40.02 2.32
2626 2636 3.826729 AGGAAAGAACCAATTAGTGTGGC 59.173 43.478 0.00 0.00 40.02 5.01
2627 2637 5.772521 CAAGGAAAGAACCAATTAGTGTGG 58.227 41.667 0.00 0.00 42.28 4.17
2686 2696 3.036084 CGCAACTCGAACGCTGGT 61.036 61.111 0.00 0.00 41.67 4.00
2692 2702 0.667792 AGAGGAAGCGCAACTCGAAC 60.668 55.000 11.47 0.00 41.67 3.95
2695 2705 1.678269 CGAAGAGGAAGCGCAACTCG 61.678 60.000 11.47 3.87 42.12 4.18
2794 2804 0.110823 GTGCGCGGTACTTGTTCTTG 60.111 55.000 8.83 0.00 0.00 3.02
2931 2941 1.017701 CAGTTGCTCGCTGATGCTGA 61.018 55.000 0.00 0.00 36.12 4.26
3145 3155 3.413327 TCTTTGGCAAATAACACGGCTA 58.587 40.909 13.89 0.00 0.00 3.93
3419 3431 6.150976 CAGTGTATTTTTCTGCATTACCTCCA 59.849 38.462 0.00 0.00 0.00 3.86
3488 3500 4.543590 TGAGAAGATGGAGTGGAAAGAC 57.456 45.455 0.00 0.00 0.00 3.01
3562 3574 1.825474 AGCGTGCTACCTAGTGTTCAT 59.175 47.619 0.00 0.00 0.00 2.57
3661 3673 9.661563 AAACATAGATGAACCTTATTTACGACA 57.338 29.630 0.00 0.00 0.00 4.35
3848 3862 2.203070 CACGTGGGAGCTATGGGC 60.203 66.667 7.95 0.00 42.19 5.36
3849 3863 2.505982 CCACGTGGGAGCTATGGG 59.494 66.667 27.57 0.00 40.01 4.00
3850 3864 2.203070 GCCACGTGGGAGCTATGG 60.203 66.667 34.58 7.67 40.01 2.74
3851 3865 2.586079 CGCCACGTGGGAGCTATG 60.586 66.667 34.58 8.27 40.01 2.23
3852 3866 3.849951 CCGCCACGTGGGAGCTAT 61.850 66.667 34.58 0.00 40.01 2.97
3888 3902 4.899239 GCCGATGGCTCGTGGGAG 62.899 72.222 0.00 0.00 46.69 4.30
3905 3919 0.250640 GGAGCTATGGGCATCAGGTG 60.251 60.000 0.00 0.00 44.79 4.00
3906 3920 1.422161 GGGAGCTATGGGCATCAGGT 61.422 60.000 0.00 0.00 44.79 4.00
3907 3921 1.377994 GGGAGCTATGGGCATCAGG 59.622 63.158 0.00 0.00 44.79 3.86
3908 3922 0.250640 GTGGGAGCTATGGGCATCAG 60.251 60.000 0.00 0.00 44.79 2.90
3909 3923 1.839191 GTGGGAGCTATGGGCATCA 59.161 57.895 0.00 0.00 44.79 3.07
3910 3924 1.302033 CGTGGGAGCTATGGGCATC 60.302 63.158 0.00 0.00 44.79 3.91
3911 3925 2.072487 ACGTGGGAGCTATGGGCAT 61.072 57.895 0.00 0.00 44.79 4.40
3912 3926 2.687200 ACGTGGGAGCTATGGGCA 60.687 61.111 0.00 0.00 44.79 5.36
3913 3927 2.203070 CACGTGGGAGCTATGGGC 60.203 66.667 7.95 0.00 42.19 5.36
3914 3928 2.505982 CCACGTGGGAGCTATGGG 59.494 66.667 27.57 0.00 40.01 4.00
3915 3929 2.203070 GCCACGTGGGAGCTATGG 60.203 66.667 34.58 7.67 40.01 2.74
3916 3930 1.522355 CTGCCACGTGGGAGCTATG 60.522 63.158 38.22 19.47 46.55 2.23
3917 3931 2.903357 CTGCCACGTGGGAGCTAT 59.097 61.111 38.22 0.00 46.55 2.97
3924 3938 4.704833 CTGGTCCCTGCCACGTGG 62.705 72.222 30.66 30.66 34.36 4.94
3925 3939 3.941188 ACTGGTCCCTGCCACGTG 61.941 66.667 9.08 9.08 34.36 4.49
3926 3940 3.941188 CACTGGTCCCTGCCACGT 61.941 66.667 0.00 0.00 34.36 4.49
3934 3948 4.740822 AATGGCCGCACTGGTCCC 62.741 66.667 0.00 0.00 43.96 4.46
3935 3949 3.443045 CAATGGCCGCACTGGTCC 61.443 66.667 0.00 0.00 43.96 4.46
3936 3950 4.120331 GCAATGGCCGCACTGGTC 62.120 66.667 0.00 0.00 45.24 4.02
3937 3951 4.666253 AGCAATGGCCGCACTGGT 62.666 61.111 0.00 0.00 42.56 4.00
3938 3952 3.818787 GAGCAATGGCCGCACTGG 61.819 66.667 0.00 0.00 42.56 4.00
3939 3953 3.818787 GGAGCAATGGCCGCACTG 61.819 66.667 0.00 0.00 42.56 3.66
3942 3956 4.445710 ATGGGAGCAATGGCCGCA 62.446 61.111 0.00 3.41 42.56 5.69
3943 3957 3.908081 CATGGGAGCAATGGCCGC 61.908 66.667 0.00 0.00 42.56 6.53
3944 3958 2.124193 TCATGGGAGCAATGGCCG 60.124 61.111 0.00 0.00 42.56 6.13
3945 3959 3.851955 CTCATGGGAGCAATGGCC 58.148 61.111 0.00 0.00 42.56 5.36
3953 3967 2.187946 GTCGGTGGCTCATGGGAG 59.812 66.667 0.00 0.00 44.33 4.30
3954 3968 2.606213 TGTCGGTGGCTCATGGGA 60.606 61.111 0.00 0.00 0.00 4.37
3955 3969 2.436646 GTGTCGGTGGCTCATGGG 60.437 66.667 0.00 0.00 0.00 4.00
3956 3970 2.436646 GGTGTCGGTGGCTCATGG 60.437 66.667 0.00 0.00 0.00 3.66
3957 3971 2.436646 GGGTGTCGGTGGCTCATG 60.437 66.667 0.00 0.00 0.00 3.07
3958 3972 4.082523 CGGGTGTCGGTGGCTCAT 62.083 66.667 0.00 0.00 34.75 2.90
3968 3982 4.910585 CTATGGGCGCCGGGTGTC 62.911 72.222 22.54 6.54 0.00 3.67
3978 3992 2.072487 TCCTGTGGGAGCTATGGGC 61.072 63.158 0.00 0.00 36.57 5.36
3979 3993 1.832912 GTCCTGTGGGAGCTATGGG 59.167 63.158 0.00 0.00 43.12 4.00
3980 3994 1.443407 CGTCCTGTGGGAGCTATGG 59.557 63.158 0.00 0.00 43.12 2.74
3981 3995 1.443407 CCGTCCTGTGGGAGCTATG 59.557 63.158 0.00 0.00 43.12 2.23
3982 3996 2.435693 GCCGTCCTGTGGGAGCTAT 61.436 63.158 0.00 0.00 43.12 2.97
3983 3997 3.075005 GCCGTCCTGTGGGAGCTA 61.075 66.667 0.00 0.00 43.12 3.32
4003 4017 2.282674 AGCCATGTGTGCCACTGG 60.283 61.111 0.00 13.97 36.48 4.00
4004 4018 1.303074 AGAGCCATGTGTGCCACTG 60.303 57.895 0.00 3.52 35.11 3.66
4005 4019 1.002868 GAGAGCCATGTGTGCCACT 60.003 57.895 0.00 0.00 35.11 4.00
4006 4020 1.302752 TGAGAGCCATGTGTGCCAC 60.303 57.895 0.00 0.00 34.56 5.01
4007 4021 1.302752 GTGAGAGCCATGTGTGCCA 60.303 57.895 0.00 0.00 0.00 4.92
4008 4022 2.393768 CGTGAGAGCCATGTGTGCC 61.394 63.158 0.00 0.00 0.00 5.01
4009 4023 1.374631 TCGTGAGAGCCATGTGTGC 60.375 57.895 0.00 0.00 34.84 4.57
4010 4024 4.994744 TCGTGAGAGCCATGTGTG 57.005 55.556 0.00 0.00 34.84 3.82
4020 4034 3.089284 TGAAGGAGTAATGCTCGTGAGA 58.911 45.455 0.00 0.00 45.03 3.27
4021 4035 3.182967 GTGAAGGAGTAATGCTCGTGAG 58.817 50.000 0.00 0.00 45.03 3.51
4022 4036 2.415491 CGTGAAGGAGTAATGCTCGTGA 60.415 50.000 0.00 0.00 45.03 4.35
4023 4037 1.920574 CGTGAAGGAGTAATGCTCGTG 59.079 52.381 0.00 0.00 45.03 4.35
4024 4038 1.135083 CCGTGAAGGAGTAATGCTCGT 60.135 52.381 0.00 0.00 45.03 4.18
4025 4039 1.560923 CCGTGAAGGAGTAATGCTCG 58.439 55.000 0.00 0.00 45.03 5.03
4026 4040 1.941325 CCCGTGAAGGAGTAATGCTC 58.059 55.000 0.00 0.00 45.00 4.26
4027 4041 0.107654 GCCCGTGAAGGAGTAATGCT 60.108 55.000 0.00 0.00 45.00 3.79
4028 4042 1.429148 CGCCCGTGAAGGAGTAATGC 61.429 60.000 0.00 0.00 45.00 3.56
4029 4043 0.174845 TCGCCCGTGAAGGAGTAATG 59.825 55.000 0.00 0.00 45.00 1.90
4030 4044 0.175073 GTCGCCCGTGAAGGAGTAAT 59.825 55.000 0.00 0.00 45.00 1.89
4031 4045 1.588082 GTCGCCCGTGAAGGAGTAA 59.412 57.895 0.00 0.00 45.00 2.24
4032 4046 2.693762 CGTCGCCCGTGAAGGAGTA 61.694 63.158 0.00 0.00 45.00 2.59
4033 4047 4.052229 CGTCGCCCGTGAAGGAGT 62.052 66.667 0.00 0.00 45.00 3.85
4034 4048 3.744719 TCGTCGCCCGTGAAGGAG 61.745 66.667 0.00 0.00 45.00 3.69
4035 4049 4.047059 GTCGTCGCCCGTGAAGGA 62.047 66.667 0.00 0.00 45.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.