>input_sequence_38471
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------------------------------------------------ATGGACTTTGAGCTCCATTTGATTAAGAGTAT
TACAAACAATTTTTCGAAGAACCAAGAAGTTGGGAGCGGTGCATATGGAGCTGTTTACAGGGTAATGAATACTTTTTATA
ATAA-TTTTTCTATATCTACATAGTTGTCAAATTAATGTTACCATTACCAGCTAGCTAAGTTCGACAACGCTAACAAGTG
ATCATACAGGCGGTGCATAACGGGGAAGAGATTGCTGTGAAGAGGCTTCATGCCTTGCAAGGACTTGATGATAAGGAATT
CGATAATGAATTCCGTAATTTTACAAAGATCTTTCACAAAAACGTTGTAAGGTTAATTGGTTACTGCTATGAATCACAAG
AAAAATTCGTTGAGCACAATGGGGACCTAATTCGTGCTAAAGCTATGGAGCGAGTTCTTTGCTTCGAATATATGCAGCGT
GGAAGCCTTGAGAAATATATTGGAGGTAAATCTGATCTAAAATTAGCTAAATTAGTAGTTTTCCAAGATATATAAACGAT
TCCGCATCTTTACATGTGTAACATATGCCCCACAAATAAGCCTCTCTATTTTCCTGTAATTGCAGATAAACCTTGTGAAC
TTGATTGGACAACATGTTATGAAATTATTAAAGGGACATGTGAGGGTTTAAATCATCTTCACATGCAGAAAAAACATATT
TTCCATCTGGACATGAAACCTGCTAACATATTGCTAGATAATAGCATGGCTCCCAAAATTGCAGATCTTGGTTTATCCAA
GCTTGTTTCTTCCACAATAACATATAAAGCAGAGGTGAAAAAAGGAACATAGTAAGTTGATGCATGTTTTAAGCCCGCAA
TTTATGCTTACGTATTTCTCTAGATTGAAGTTCTATTTGTATTGCACTAACCATATCCGTGATGCATATGATATCATGCA
GTGGGTACATGCCACCAGAGTACATAAACAATGGATTCATATCTGAGAAGTTTGATGTGTTCAGTCTGGGGGTCATAATT
ATAAAAATGATGGCTGGGAATACAGGCCATGTCAGCTGTTTTGAAATGTCCCCAAAAGAGTTCATTGAGCTTGTGAGAAA
AGTTCTCGATTCATACAACAAACATGAGCATAGGCCTTTTACATGTTGTGCTATATGCACTCCTTATTCGTGCTTGCACA
CTATGTACCACTTTCTAATATACTTTGCATGCTCATTTTTCGAATCCAGGTAAGTAAAACTTGGAAGGAGAAGATGCAGG
CAGTGTCAGGGTATTCATCTCACGAGATATACATCCTTCAAGTGCGCAGATGCATTGAGATAGCATTGCGATGTATATGC
AAGGATCGAAAAGAAAGACCTAATATAGAGAAAATTGTTCATGAACTGGAGGAACTGGAGGTTGAGACCAATAAAATTGC
ACTACCTTTTGATCGGTCAAAAGACCTAATTCTGAAGGTATGTATGTACAAGTGACTATTCTGAAGGGATGGACAAAGCC
CGAAGATGCACCCTCTCTATTTATTCCCTTGCACCCTATCTATTTATTCTTTGTTCTGTATTTTGCATTCTGCTTTTCTA
CACTAGTAGCACTCCGGCTTATGAAATAGGCAATCTATACAGTTTGTTTTCTATTAATGCATTTTTTTATGATTTGCCAC
ACTAATTGGTTCTTTCCTTGCAGAGAAGTTGTGCCACCAATGATGTGGCGGTGGAACCAGCGTTCGAGTTGCGCTTCCTC
TTCGAGCCGAGGAAGGAGGTGTCGTGCTGCCTGCAGCTCACCAACAAGACGGATGGTTTCCTCGCGTTCAACATAAAGGT
CAACAAGAACAAGTACCGCGCACAGCCCAGCATTGGCACAATGCCTCCGTGCTCCAAGTGTTATGTCATCGTGACGCTGC
GTCCGCAGGGGGCGGCACCACCCAACATGCAGTGTCACGACATGCTGCTCGTGCAGAGCATCAGCATCAGCGAGCAACTG
GCATCAGAAGATACTCAAATTTCTTATCAAGAAGTGTTCAAGACAACCTTAGCGGAGAAGGTGGTAGATGAGGTGAAACT
GCCAATTGTTTATGTTCCTTTATTGGATGGATAA----------------------------------------------
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>chr2D_1_TraesCS2D01G057700
GTTGACGAGCCCATGTTGGGGACTGAGTGTACCGGTACCAAGATGGACCGGAGTTGACAATGAAAGTTTTGAGGAAGTGG
TGAAATTTTTTAAATAAGAAAAATAATTAGAGTAAATGATTGCATATTATGTTATAGCCAAGGCACTTTTTACGGATGAG
TAAAATAAAAGAACGCGAACTAGGGGCAAGCAAAAAACTATATGAAGAAAATTAATCGTGAATTTAACTCAGAATTTCTA
ACATCGAAAGTCATTATCGTTTAGACATGAAAGTCAAGAAGATAAATGATGATAAGTTCAATTAACTATTAGATGTGGAT
TCCAATACGTAAATTGCTTACTTTTTTTGAGGGAATGACATCATGACGGATTATATTGATTTGGGGAAAAAAGATACATC
ATCAGCCAGTACATCAACTAAGAACTCAGTTGGATCTGCCGTCCACACAATTGTTTGGGCATCAACCACCATACTAGCTA
TCACATAAATTAACGAATAGGTTGCCAGAGAATCTGGGGAACAAAAGCAGGTTAACGGGTAAAGTAACG----TTTTTAC
CTAAGAAGAGAAGAATATCAATAATTGGTACTAAGTAGGGTATATCTAACTATTGATTTGAACGGTCTTCGAGTGTACCT
AGTCTTCTT---AATGTCGGCACATTGCTTCCTCCAATGGTGACTTGGAGAGTCAACGTCACATTAATGACTTATTTTTT
TCTTTTAGGCCAACCAACATCTCATCACCTCCTCATCGCCGGATTTAAAGGTTGCTGCTGCTGGATGGGTTCCTCATCGG
CAAGGAGAAAACAACACGATTATC-CCTTCCATCTTTCTCCAGGTTAGTGTTACCCAATCTTTGCTTCATTCATTAGTTC
TTCTTTCTACCAAAGTATATCATGAGTGTGGACAAAGGATATTTTCTGTCCATATTGGAAGATTATTTCTGTGATTCTGT
TTCAGGAAGAAGATCGTCACATATGCCTGGCTGGTGCAAAGGAGAGCCATGGACTTTGAGCTCCATTTGATTAAGAGTAT
TACAAACAATTTTTCGAAGAACCAAGAAGTTGGGAGCGGTGCATATGGAGCTGTTTACAGGGTAATGAATACTTTTTATA
ATAA-TTTTTCTATATCTACATAGTTGTCAAATTAATGTTACCATTACCAGCTAGCTAAGTTCGACAACGCTAACAAGTG
ATCATACAGGCGGTGCATAACGGGGAAGAGATTGCTGTGAAGAGGCTTCATGCCTTGCAAGGACTTGATGATAAGGAATT
CGATAATGAATTCCGTAATTTTACAAAGATCTTTCACAAAAACGTTGTAAGGTTAATTGGTTACTGCTATGAATCACAAG
AAAAATTCGTTGAGCACAATGGGGACCTAATTCGTGCTAAAGCTATGGAGCGAGTTCTTTGCTTCGAATATATGCAGCGT
GGAAGCCTTGAGAAATATATTGGAGGTAAATCTGATCTAAAATTAGCTAAATTAGTAGTTTTCCAAGATATATAAACGAT
TCCGCATCTTTACATGTGTAACATATGCCCCACAAATAAGCCTCTCTATTTTCCTGTAATTGCAGATAAACCTTGTGAAC
TTGATTGGACAACATGTTATGAAATTATTAAAGGGACATGTGAGGGTTTAAATCATCTTCACATGCAGAAAAAACATATT
TTCCATCTGGACATGAAACCTGCTAACATATTGCTAGATAATAGCATGGCTCCCAAAATTGCAGATCTTGGTTTATCCAA
GCTTGTTTCTTCCACAATAACATATAAAGCAGAGGTGAAAAAAGGAACATAGTAAGTTGATGCATGTTTTAAGCCCGCAA
TTTATGCTTACGTATTTCTCTAGATTGAAGTTCTATTTGTATTGCACTAACCATATCCGTGATGCATATGATATCATGCA
GTGGGTACATGCCACCAGAGTACATAAACAATGGATTCATATCTGAGAAGTTTGATGTGTTCAGTCTGGGGGTCATAATT
ATAAAAATGATGGCTGGGAATACAGGCCATGTCAGCTGTTTTGAAATGTCCCCAAAAGAGTTCATTGAGCTTGTGAGAAA
AGTTCTCGATTCATACAACAAACATGAGCATAGGCCTTTTACATGTTGTGCTATATGCACTCCTTATTCGTGCTTGCACA
CTATGTACCACTTTCTAATATACTTTGCATGCTCATTTTTCGAATCCAGGTAAGTAAAACTTGGAAGGAGAAGATGCAGG
CAGTGTCAGGGTATTCATCTCACGAGATATACATCCTTCAAGTGCGCAGATGCATTGAGATAGCATTGCGATGTATATGC
AAGGATCGAAAAGAAAGACCTAATATAGAGAAAATTGTTCATGAACTGGAGGAACTGGAGGTTGAGACCAATAAAATTGC
ACTACCTTTTGATCGGTCAAAAGACCTAATTCTGAAGGTATGTATGTACAAGTGACTATTCTGAAGGGATGGACAAAGCC
CGAAGATGCACCCTCTCTATTTATTCCCTTGCACCCTATCTATTTATTCTTTGTTCTGTATTTTGCATTCTGCTTTTCTA
CACTAGTAGCACTCCGGCTTATGAAATAGGCAATCTATACAGTTTGTTTTCTATTAATGCATTTTTTTATGATTTGCCAC
ACTAATTGGTTCTTTCCTTGCAGAGAAGTTGTGCCACCAATGATGTGGCGGTGGAACCAGCGTTCGAGTTGCGCTTCCTC
TTCGAGCCGAGGAAGGAGGTGTCGTGCTGCCTGCAGCTCACCAACAAGACGGATGGTTTCCTCGCGTTCAACATAAAGGT
CAACAAGAACAAGTACCGCGCACAGCCCAGCATTGGCACAATGCCTCCGTGCTCCAAGTGTTATGTCATCGTGACGCTGC
GTCCGCAGGGGGCGGCACCACCCAACATGCAGTGTCACGACATGCTGCTCGTGCAGAGCATCAGCATCAGCGAGCAACTG
GCATCAGAAGATACTCAAATTTCTTATCAAGAAGTGTTCAAGACAACCTTAGCGGAGAAGGTGGTAGATGAGGTGAAACT
GCCAATTGTTTATGTTCCTTTATTGGATGGATAATAACATCTACCTGTCGCCAAGCTGGTGCGCCATGGTGTTGAATTCA
GACAATTCTTGAATCGAGTAGTACGCTATATATGTAGCCGTGTTATTTGCCAAAGAGAGTTCTCTGTAATGAGGACGCTC
GTGTGTGGTGTGGGTAGTTGACTTGAGGCTTTTTTTTGCGAGTGGACAT-AAAAAATGATATAATCATCCTTTCAGAGA-
AAAAAATCCCCTTGCATTTGTTATGAGAAGAAACACTCACGATATTTTGTTATAGAGATCTGAGAAACATTATGTAATAC
TCCCTCCGCCCCGAATTATTTGTTTTAGATTTGTCTAGATACGTATGTAACTAAGACAACTAATTTAGGGTGGAGGTAAT
GCAGAAAAATACACTGAAAAACACAAACAAGAAATAAGAAATGCATACTCGTCTTCAAAGTCTTTCCACTCCATCTTCTC
ATCAAAGCCTGTGATTTACCAAAGAAGCAAAGTTCGAAAATTGCTTTTGGAGCATGAACACTAGGTAGCACGCTATCCCC
ACCGCTACCCCAACCGGGGCAGTGCCTCGGTCTGTTTTCCTAGCTAACATATCCAAACTAGGTATTCGGAACTGTCGTAA
ATAAGGTTCATCTATGTTTATGTTTTATTATTTC--TTCTTATGTTTAAGTCCATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCC
CACAAGCCACCGGCACCCGACGCCCATAGCTCCCACGTGGCGGCGACCAGCGCGCCCATGGCTCCCACGAGCCATCGGCA
CCTGATGCCCATAGCTCCCACGTGGCAGGGACCAGTGCGGCCATTGCTCCCATGAGCCACCGACACCCGGCGCCCATAGC
TCCCACAGGACGGCGGCCAGTGGCACACATGGCTCTCACGAGCATTACTCCTTCACGGGCGACGACCCACGTGTGACG
>chr2D_1
GTTGACGAGCTCATGTTGGGGACTGAGTGTACCGTTACCAAGATGGACGGGAGCTGACAATGAAAGATTTGAGAAAGTGG
TGAAAAGATTGAAATAAGAAAAAGAATTAGAGTAAATGATTGTATATTATGTTATAGCAAGGGCACTTTGTACGGATGAG
AAAGATAAAAGAAGGCGAACTAGGGGCATGCAAAAAA-TATCTGAAGAAAATTAATTATGAATTTAACTCAGAATTTCTA
ACATCGAAAGTCATTCTCATTTAGACGTGAAAGTCAAGAAGATAAATGATGATAAGTTCAATTAACTATTAGATGTGGAT
TCCAATACGTAAATTGCTTACTTTCACGCAGATTAAGGAACAGGCTAT--------------------------------
--------------------------------------------------------------------------------
-------------------------CAGAGAATCTGGGGAACAAAAGCAGGTTAACGGGTAAAGAAGTAACCTTTTTTAC
CTAAGAAGAGAAGAATATCAATAATTGGTA----GTAGGGTATATCTAGCTATTGATTTGAACGGTCTT-GAGTGGACCT
AGTATTCTTACGAATGTCAGCACATTGCTTCCTCCAATGGTGACTTGGAGAGTCAACGTCACATTAATGACTTA-TTTTT
TCTTTTAGGCCAACCAACAGCTCGTCACCTCCTCATCGCTGGATTTAAAGGTTGCTGCTCTTGGATGGGTTCCTCATCGG
CAAGGAGAAAACAACACGATTATCTCCTTCTATCTTTCTCCAGGTTAGTGTTACCAAATCTTTGGTTAATTCATTAGTTC
TTCTTTCTACCAAAGTATATCATGAGTCTGGACAAAGGATATTTTCTGTCTATGTTGGAAGATTATTTCTGTGATTCTGT
TTCAGGAAGAAGATCGTCACGTAAGCCTGGCTGGTGCAAAGGAGAGCTATGGAGTTTGAGCTCCATTTGATTAAGAGTAT
TACAAACAATTTTTCAAAGAACCAAGAAGTTGGGAGCGGTGCGTATGGAGCTGTTTACAGGGTAATGAATACTATTTATA
ATTATTTTTTCTATAACTACATAGTTGTCAAATTAATGTTGCCACTGCC----AGATAAGTTCGACAATGCTAACAAGTG
ATCATACAGGCAGTGCATAAGGGGGAAGAGATTGCTGTGAAGAGGCTTCATGCCTTGCAAGGACTTGATGATAGGGAATT
TGATAATGAATTCCGTAATTTTACAAAGATCTGTCACAAAAATGTTGTAAGGTTAGTTGGTTACTGTTATGAATCGCAAG
AAAAATTCGTTGAGCACAAGGGGGAGCTAATTCGTGCTAAAGCTATGGAGGGAGTTCTTTGCTTTGAATATATGCAGCGT
GGAAGCCTTGAGAAATATATTGGAGGTAAATCTGATCTACAATTAGCTAAATTAGTAGGTTTCCAAGATATATAAACGAT
TCGGCATCTTTACATGTCTAACAAATGCCCCACAAATAAGCCTCTCTATTTTCCTGTAATTGCAGATGAATCTTGTAAAC
TTGATTGGAGAACATGTTATGAAATTATTAAAGGGACATGTGAGGGTTTAAATCATCTTCACATGCAGAAAAATCGTATT
TTCCATCTGGACATGAAACCTGCTAACATATTGCTAGATAATAGCATGGCGCCCAAAATTGCAGATCTTGGTTTGTCCAA
GCTTGTTTCTTCGACAATAACATATAAAACAGAGGTGAAAAAAGGAACATAGTAAGTTGATGCATCTTTTAAGCCCGTAA
TTTATGCTTACATATTGTTCTAGATTGAGGTTCTATTTGTATTGCACTAACCATATCCGTGATGCTTATAATATCATGGA
GTGGGTACATGCCACCAGAATACATAAACAATGGATTCATATCTGACAAGTTTGATGTGTCCAGTCTAGGGGTCATAATT
ATAAAAATTGTGGCCAGGAATACAGGCCACGTCAGCTGTTTTGAAATGTCCCAAGAAGAGTTCATTGAGCTTGTGAGAAA
GGTTCTCGATTCATACAACAAACATGAGCATAGGCCTTTTACATGTTGTGCTATATGCACTCCTTATTCGTGCTTGCACA
CCATGTACCACTTTCTAATTAACTTTGCATGCTCATTTTTTGAATCCAGGTAAGTAAATATTGGAAGGAGAAGATGCAGG
CAGTGTCAGGGTATTCATCTCACGAGATATACATCCTTCAAGTGCGCAGATGCACTGAGATAGCATTAAGATGTATATCC
AAGGATCGAAAAGAAAGACCTAATATAGATGAAATTGTTCTTGAACTGGAGGAACTGGAGGTTGAGACCAAGAAAAATGC
ACTACCTTTTGATGGGTCAAAATACCTAATTCTGAAGGTATGTATGTATCAGTGTCTGTTCTGAAGGGATGGACAATACC
CGAAGATGCACCCTCTCTATTTATTCCCTTGCACCCTATCTATTTATTCTTTGTTCTGTATTTTGCATTCTGCTTTTCTA
CACTAGTAGCACTCCGTCTTATGAAATAGGCAATCTATACAGTTTGTTTTCTATTAATGCATTTTTTATGATTTTT-CAC
ACTAATTGGTTCTTTCCTTGCAGAGAAGTTGTGCCACCAATGATGTGGCGGTGGACCCAGCCTTGGAGTTGCGCTTCCTC
TTCGAGCCGAGGAAGGAGGTGTCGTGCTGCCTGCAGCTCACCAACAAGACGGATGGTTTCCTCGCGTTCAACATAAAGGT
CAATAAGAACAAGTACCGCGCACAGCCCAGCATCAGCACAATGCCTCCGTGCTCCAAGTGTTATGTCATCGTGACGCTGC
GTCCGCAGGGGGCGGCACCACCCAACATGCAGTGTCATGATATGCTGCTCGTGCAGAGCACCAGCATCAGCGAGCAACTG
GCATCAGAAGATACTCAAATTTCTTATCAAGAAGTGTTCAAGACAACCTTAGCGGAGAAGGTGGTAGATGAGGTGAAACT
GCCAATTGTTTATGTTGCTTTATTGGATGGATAATAACATCTACCTGTCACCAAGCTGGTGCGCCATGGTGTTGAATTCA
GACAATTCTTGAATCGAGTAGTACGCTATATATGCAGCCGTGTTATTTGCCAAAGAGAGTTCTCTGTAATGAGGACGCTC
GTGTGTGGTGTGGGTAGTTGACTTGAGGCTTTTTTTTGCGAGTGGACATAAAAAAATGATATAATCATCCTTTCAGAGAG
AAAAAATCCCCTTGCATTTGTTATGAGAAGAAACACTCACGATATTTTGTTATAGAGATCTGAGAAACATTATGTAATAC
TCCCTCCGCCCCGAATTATTTGTTTTAGATTTGTCTAGATACGTATGTAACTAAGACAACTAATTTAGGGCGGAGGTAAT
GCAGAAAAATACATTGAAAAACACAAACAAGAAATAAGAAATGCATACTCGTCTTCAAAATCTTTCCACTCCATCTTCTC
ATCAAAGCCTGTGATTTACCAAAGAAGCAAAGTTCGAAAATTGCTTTTGGAGCGTGAACACTAGGTAGCACGCTATCCCC
ACCGCTACCCCAACCGGGGCAGTGCCTCGGTCTGTTTTCCTAGCTAACATATCCAAACTAGGTATTCGGAACAGTCGTAA
ATAAGGTTCATCTATGTTTATGTTTTATTATTTTTTTTCTTATGTTTAAGTCCAT-------------------------
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>SNPs
----------S-----------------------S-------------S----S------------S------S------
-----SSS--S------------S------------------S---------------S-S--------S----------
S--S---------S--------------S--------S---S--------------SS----------------------
---------------S--S-------S-----------------------------------------------------
------------------------SSSSS--SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------S-SSS-----------
------------------------------SSSS--------------S--------------------S-----S----
---S--------------S-------------------------------------------------------S-----
-------------------S---S---------------S-------------------SS-------------------
------------------------------S------------------------S--------S--S------------
---------------------------S----------------------S--S--------------------------
--------------------S--S-----------------------S-----S--------------------------
---------------S--------------------------S------------------------------S------
--S------------S------------------------S---S-S--SSSS--S------------S-----------
-----------S--------S----------------------------------------------------S------
S-------------------------------S---------S------------S----------S--------S----
-------------------S-----S------------------------S-------------S---------------
---------------------------------------S------------------S---------------------
--S--------------S-----S-------------------------------------------S--S-----S---
---------S---------------------------------------------------------------S-S----
--------------------------------------------------S-----------------------S-----
------------S---------------S------------------------------------S-----------S--
-----------S----SS----------S------------------------------------S---S--------S-
-------------------S--------------------------S-------------S------S------------
--------SS----SS-------------S----------------------S-S-------------------------
S-------------------------------------------------------------------------------
-S-----------------SS-------------------S-----------------SS--------------------
------------------------------------------------------S------------SS---------S-
-----------------------------SS---------S------------------------------S----S---
-------------S--------S-------------------------SS----S--S------------------SS--
--------------------------------------------------------------------------------
----------------S--------------------------------------------------SSSSS---SS---
-------------------------------------------------------S-----S--S---------------
--------------------------------------------------------------------------------
---S-----------------------------SS---------------------------------------------
-------------------------------------S--S-------------------S-------------------
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----------------S--------------------------------S------------------------------
----------------------------------S---------------------------------------------
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----------------------------------------------------------------------S---------
-------------S---------------------------------------------S--------------------
-----------------------------------------------------S--------------------------
------------------------------------------------------------------------S-------
---------------------------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_760
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--------------------CTCATCACCTCCTCATCGCC----------------------------------------
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>reverse_2009
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--------GATGGCTGGGAATACAGGCC----------------------------------------------------
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>forward_1014
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----------------------------------TGCAAAGGAGAGCCATGGAC--------------------------
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>reverse_2804
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---CAAGAACAAGTACCGCGCAC---------------------------------------------------------
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>forward_1940
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GTGGGTACATGCCACCAGAG------------------------------------------------------------
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>reverse_3919
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CCTGATGCCCATAGCTCC--------------------------------------------------------------
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