Multiple sequence alignment - TraesCS2D01G037200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G037200 chr2D 100.000 2516 0 0 1 2516 13839985 13837470 0.000000e+00 4647.0
1 TraesCS2D01G037200 chr2D 85.816 423 38 12 1544 1962 13813388 13812984 1.790000e-116 429.0
2 TraesCS2D01G037200 chr2D 80.874 183 16 13 2002 2181 528993165 528992999 2.630000e-25 126.0
3 TraesCS2D01G037200 chr2B 91.725 1849 108 23 694 2516 25186863 25185034 0.000000e+00 2525.0
4 TraesCS2D01G037200 chr2A 89.397 1377 76 34 622 1947 16026167 16024810 0.000000e+00 1670.0
5 TraesCS2D01G037200 chr2A 86.831 243 20 5 1661 1903 16014876 16014646 6.900000e-66 261.0
6 TraesCS2D01G037200 chr2A 80.833 240 42 3 219 457 758807639 758807875 4.270000e-43 185.0
7 TraesCS2D01G037200 chr2A 90.580 138 7 6 78 211 39899865 39899730 7.150000e-41 178.0
8 TraesCS2D01G037200 chr2A 89.928 139 7 5 77 211 39585711 39585846 3.330000e-39 172.0
9 TraesCS2D01G037200 chr6D 89.637 193 19 1 462 653 83486693 83486885 6.950000e-61 244.0
10 TraesCS2D01G037200 chr6D 81.579 228 19 15 1 218 453767449 453767235 1.550000e-37 167.0
11 TraesCS2D01G037200 chr6D 78.776 245 46 5 216 457 289718307 289718548 2.590000e-35 159.0
12 TraesCS2D01G037200 chr6D 83.333 156 21 4 2025 2180 367774386 367774236 3.370000e-29 139.0
13 TraesCS2D01G037200 chr6B 88.144 194 22 1 462 654 159193852 159194045 1.950000e-56 230.0
14 TraesCS2D01G037200 chr6B 87.629 194 23 1 462 654 159317490 159317683 9.060000e-55 224.0
15 TraesCS2D01G037200 chr6B 79.661 236 48 0 232 467 498276702 498276937 1.200000e-38 171.0
16 TraesCS2D01G037200 chr6B 86.986 146 8 7 78 218 159193728 159193867 1.210000e-33 154.0
17 TraesCS2D01G037200 chrUn 81.124 249 41 4 220 463 299878985 299879232 7.100000e-46 195.0
18 TraesCS2D01G037200 chrUn 81.124 249 41 4 220 463 316444467 316444220 7.100000e-46 195.0
19 TraesCS2D01G037200 chr1D 89.542 153 16 0 500 652 24136894 24137046 7.100000e-46 195.0
20 TraesCS2D01G037200 chr5D 82.143 224 37 1 234 454 528280128 528280351 3.300000e-44 189.0
21 TraesCS2D01G037200 chr5D 93.878 49 2 1 496 543 5791991 5792039 3.470000e-09 73.1
22 TraesCS2D01G037200 chr6A 81.385 231 30 11 2015 2236 448154637 448154863 2.570000e-40 176.0
23 TraesCS2D01G037200 chr6A 79.447 253 45 5 216 463 123973588 123973338 3.330000e-39 172.0
24 TraesCS2D01G037200 chr5B 79.528 254 46 4 218 467 86250826 86251077 2.570000e-40 176.0
25 TraesCS2D01G037200 chr4D 83.582 201 16 11 30 218 499294006 499294201 3.330000e-39 172.0
26 TraesCS2D01G037200 chr1A 79.447 253 43 8 218 466 343629369 343629122 1.200000e-38 171.0
27 TraesCS2D01G037200 chr5A 82.609 184 21 8 2018 2200 477539581 477539754 4.330000e-33 152.0
28 TraesCS2D01G037200 chr7A 81.443 194 26 9 2007 2195 55347726 55347538 1.560000e-32 150.0
29 TraesCS2D01G037200 chr7B 80.473 169 25 8 2013 2177 451153102 451153266 3.400000e-24 122.0
30 TraesCS2D01G037200 chr3A 85.156 128 10 5 2012 2138 203957861 203957980 3.400000e-24 122.0
31 TraesCS2D01G037200 chr4A 79.381 194 20 13 2032 2213 39067618 39067433 4.400000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G037200 chr2D 13837470 13839985 2515 True 4647 4647 100.000 1 2516 1 chr2D.!!$R2 2515
1 TraesCS2D01G037200 chr2B 25185034 25186863 1829 True 2525 2525 91.725 694 2516 1 chr2B.!!$R1 1822
2 TraesCS2D01G037200 chr2A 16024810 16026167 1357 True 1670 1670 89.397 622 1947 1 chr2A.!!$R2 1325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 378 0.033405 ATTGGCCTCTCAGCTGCAAT 60.033 50.0 9.47 8.94 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1613 1660 0.806868 CGACTCAGGGTAGTACGCAA 59.193 55.0 18.51 6.27 32.95 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.687081 AAATGTAGAGTGGAAACGAAAACA 57.313 33.333 0.00 0.00 0.00 2.83
24 25 6.687081 AATGTAGAGTGGAAACGAAAACAA 57.313 33.333 0.00 0.00 0.00 2.83
25 26 6.687081 ATGTAGAGTGGAAACGAAAACAAA 57.313 33.333 0.00 0.00 0.00 2.83
26 27 5.871539 TGTAGAGTGGAAACGAAAACAAAC 58.128 37.500 0.00 0.00 0.00 2.93
27 28 5.411977 TGTAGAGTGGAAACGAAAACAAACA 59.588 36.000 0.00 0.00 0.00 2.83
28 29 5.576447 AGAGTGGAAACGAAAACAAACAT 57.424 34.783 0.00 0.00 0.00 2.71
29 30 6.687081 AGAGTGGAAACGAAAACAAACATA 57.313 33.333 0.00 0.00 0.00 2.29
30 31 7.090953 AGAGTGGAAACGAAAACAAACATAA 57.909 32.000 0.00 0.00 0.00 1.90
31 32 7.193595 AGAGTGGAAACGAAAACAAACATAAG 58.806 34.615 0.00 0.00 0.00 1.73
32 33 7.066525 AGAGTGGAAACGAAAACAAACATAAGA 59.933 33.333 0.00 0.00 0.00 2.10
33 34 7.540299 AGTGGAAACGAAAACAAACATAAGAA 58.460 30.769 0.00 0.00 0.00 2.52
34 35 7.486870 AGTGGAAACGAAAACAAACATAAGAAC 59.513 33.333 0.00 0.00 0.00 3.01
35 36 7.273815 GTGGAAACGAAAACAAACATAAGAACA 59.726 33.333 0.00 0.00 0.00 3.18
36 37 7.813148 TGGAAACGAAAACAAACATAAGAACAA 59.187 29.630 0.00 0.00 0.00 2.83
37 38 8.318167 GGAAACGAAAACAAACATAAGAACAAG 58.682 33.333 0.00 0.00 0.00 3.16
38 39 6.806120 ACGAAAACAAACATAAGAACAAGC 57.194 33.333 0.00 0.00 0.00 4.01
39 40 6.326375 ACGAAAACAAACATAAGAACAAGCA 58.674 32.000 0.00 0.00 0.00 3.91
40 41 6.809196 ACGAAAACAAACATAAGAACAAGCAA 59.191 30.769 0.00 0.00 0.00 3.91
41 42 7.329717 ACGAAAACAAACATAAGAACAAGCAAA 59.670 29.630 0.00 0.00 0.00 3.68
42 43 8.165428 CGAAAACAAACATAAGAACAAGCAAAA 58.835 29.630 0.00 0.00 0.00 2.44
43 44 9.818796 GAAAACAAACATAAGAACAAGCAAAAA 57.181 25.926 0.00 0.00 0.00 1.94
92 93 7.862512 AAAAATGGAGAAGAAACAAAATGCA 57.137 28.000 0.00 0.00 0.00 3.96
93 94 7.862512 AAAATGGAGAAGAAACAAAATGCAA 57.137 28.000 0.00 0.00 0.00 4.08
94 95 7.486802 AAATGGAGAAGAAACAAAATGCAAG 57.513 32.000 0.00 0.00 0.00 4.01
95 96 5.850557 TGGAGAAGAAACAAAATGCAAGA 57.149 34.783 0.00 0.00 0.00 3.02
96 97 6.219417 TGGAGAAGAAACAAAATGCAAGAA 57.781 33.333 0.00 0.00 0.00 2.52
97 98 6.638610 TGGAGAAGAAACAAAATGCAAGAAA 58.361 32.000 0.00 0.00 0.00 2.52
98 99 6.757947 TGGAGAAGAAACAAAATGCAAGAAAG 59.242 34.615 0.00 0.00 0.00 2.62
99 100 6.980397 GGAGAAGAAACAAAATGCAAGAAAGA 59.020 34.615 0.00 0.00 0.00 2.52
100 101 7.492344 GGAGAAGAAACAAAATGCAAGAAAGAA 59.508 33.333 0.00 0.00 0.00 2.52
101 102 8.953368 AGAAGAAACAAAATGCAAGAAAGAAT 57.047 26.923 0.00 0.00 0.00 2.40
102 103 8.823818 AGAAGAAACAAAATGCAAGAAAGAATG 58.176 29.630 0.00 0.00 0.00 2.67
103 104 8.721019 AAGAAACAAAATGCAAGAAAGAATGA 57.279 26.923 0.00 0.00 0.00 2.57
104 105 8.721019 AGAAACAAAATGCAAGAAAGAATGAA 57.279 26.923 0.00 0.00 0.00 2.57
105 106 9.165035 AGAAACAAAATGCAAGAAAGAATGAAA 57.835 25.926 0.00 0.00 0.00 2.69
106 107 9.771915 GAAACAAAATGCAAGAAAGAATGAAAA 57.228 25.926 0.00 0.00 0.00 2.29
167 168 3.933861 AAAACCTGGATCGAATAGCCT 57.066 42.857 0.00 0.00 33.51 4.58
168 169 3.477210 AAACCTGGATCGAATAGCCTC 57.523 47.619 0.00 0.00 33.51 4.70
169 170 2.088104 ACCTGGATCGAATAGCCTCA 57.912 50.000 0.00 0.00 33.51 3.86
170 171 2.398588 ACCTGGATCGAATAGCCTCAA 58.601 47.619 0.00 0.00 33.51 3.02
171 172 2.366916 ACCTGGATCGAATAGCCTCAAG 59.633 50.000 0.00 0.00 33.51 3.02
172 173 2.366916 CCTGGATCGAATAGCCTCAAGT 59.633 50.000 0.00 0.00 33.51 3.16
173 174 3.574396 CCTGGATCGAATAGCCTCAAGTA 59.426 47.826 0.00 0.00 33.51 2.24
174 175 4.321601 CCTGGATCGAATAGCCTCAAGTAG 60.322 50.000 0.00 0.00 33.51 2.57
183 184 2.202756 CTCAAGTAGGACGCGCCC 60.203 66.667 5.73 3.78 37.37 6.13
184 185 2.678934 TCAAGTAGGACGCGCCCT 60.679 61.111 20.51 20.51 40.29 5.19
185 186 1.378911 TCAAGTAGGACGCGCCCTA 60.379 57.895 17.96 17.96 37.74 3.53
189 190 2.887360 TAGGACGCGCCCTACAAC 59.113 61.111 17.96 0.00 37.74 3.32
190 191 1.679977 TAGGACGCGCCCTACAACT 60.680 57.895 17.96 0.00 37.74 3.16
191 192 1.252904 TAGGACGCGCCCTACAACTT 61.253 55.000 17.96 0.00 37.74 2.66
192 193 1.216178 GGACGCGCCCTACAACTTA 59.784 57.895 5.73 0.00 0.00 2.24
193 194 1.080435 GGACGCGCCCTACAACTTAC 61.080 60.000 5.73 0.00 0.00 2.34
194 195 1.079612 ACGCGCCCTACAACTTACC 60.080 57.895 5.73 0.00 0.00 2.85
195 196 1.079681 CGCGCCCTACAACTTACCA 60.080 57.895 0.00 0.00 0.00 3.25
196 197 1.356527 CGCGCCCTACAACTTACCAC 61.357 60.000 0.00 0.00 0.00 4.16
197 198 0.320946 GCGCCCTACAACTTACCACA 60.321 55.000 0.00 0.00 0.00 4.17
198 199 1.878948 GCGCCCTACAACTTACCACAA 60.879 52.381 0.00 0.00 0.00 3.33
199 200 2.073816 CGCCCTACAACTTACCACAAG 58.926 52.381 0.00 0.00 0.00 3.16
200 201 2.289195 CGCCCTACAACTTACCACAAGA 60.289 50.000 0.00 0.00 0.00 3.02
201 202 3.072211 GCCCTACAACTTACCACAAGAC 58.928 50.000 0.00 0.00 0.00 3.01
202 203 3.323243 CCCTACAACTTACCACAAGACG 58.677 50.000 0.00 0.00 0.00 4.18
203 204 3.323243 CCTACAACTTACCACAAGACGG 58.677 50.000 0.00 0.00 0.00 4.79
204 205 3.006110 CCTACAACTTACCACAAGACGGA 59.994 47.826 0.00 0.00 0.00 4.69
205 206 2.830104 ACAACTTACCACAAGACGGAC 58.170 47.619 0.00 0.00 0.00 4.79
206 207 2.140717 CAACTTACCACAAGACGGACC 58.859 52.381 0.00 0.00 0.00 4.46
207 208 0.683412 ACTTACCACAAGACGGACCC 59.317 55.000 0.00 0.00 0.00 4.46
208 209 0.974383 CTTACCACAAGACGGACCCT 59.026 55.000 0.00 0.00 0.00 4.34
209 210 2.173519 CTTACCACAAGACGGACCCTA 58.826 52.381 0.00 0.00 0.00 3.53
210 211 1.843368 TACCACAAGACGGACCCTAG 58.157 55.000 0.00 0.00 0.00 3.02
211 212 0.903454 ACCACAAGACGGACCCTAGG 60.903 60.000 0.06 0.06 0.00 3.02
212 213 0.903454 CCACAAGACGGACCCTAGGT 60.903 60.000 8.29 0.00 39.44 3.08
213 214 0.246635 CACAAGACGGACCCTAGGTG 59.753 60.000 8.29 1.63 35.25 4.00
214 215 0.903454 ACAAGACGGACCCTAGGTGG 60.903 60.000 8.29 0.00 35.25 4.61
215 216 0.613853 CAAGACGGACCCTAGGTGGA 60.614 60.000 8.29 0.00 35.25 4.02
216 217 0.324460 AAGACGGACCCTAGGTGGAG 60.324 60.000 8.29 0.00 35.25 3.86
217 218 1.000107 GACGGACCCTAGGTGGAGT 60.000 63.158 8.29 2.38 35.25 3.85
218 219 0.614134 GACGGACCCTAGGTGGAGTT 60.614 60.000 8.29 0.00 35.25 3.01
219 220 0.178912 ACGGACCCTAGGTGGAGTTT 60.179 55.000 8.29 0.00 35.25 2.66
220 221 0.981943 CGGACCCTAGGTGGAGTTTT 59.018 55.000 8.29 0.00 35.25 2.43
221 222 1.350019 CGGACCCTAGGTGGAGTTTTT 59.650 52.381 8.29 0.00 35.25 1.94
259 260 8.985315 ACTTTATTCATCAAATGATAGCCAGA 57.015 30.769 0.00 0.00 39.39 3.86
260 261 9.584008 ACTTTATTCATCAAATGATAGCCAGAT 57.416 29.630 0.00 0.00 39.39 2.90
263 264 7.834881 ATTCATCAAATGATAGCCAGATTGT 57.165 32.000 0.00 0.00 39.39 2.71
264 265 7.649533 TTCATCAAATGATAGCCAGATTGTT 57.350 32.000 0.00 0.00 39.39 2.83
265 266 7.649533 TCATCAAATGATAGCCAGATTGTTT 57.350 32.000 0.00 0.00 33.59 2.83
266 267 8.750515 TCATCAAATGATAGCCAGATTGTTTA 57.249 30.769 0.00 0.00 33.59 2.01
267 268 8.623903 TCATCAAATGATAGCCAGATTGTTTAC 58.376 33.333 0.00 0.00 33.59 2.01
268 269 7.936496 TCAAATGATAGCCAGATTGTTTACA 57.064 32.000 0.00 0.00 31.36 2.41
269 270 8.523915 TCAAATGATAGCCAGATTGTTTACAT 57.476 30.769 0.00 0.00 31.36 2.29
270 271 9.625747 TCAAATGATAGCCAGATTGTTTACATA 57.374 29.630 0.00 0.00 31.36 2.29
274 275 9.797642 ATGATAGCCAGATTGTTTACATATTGA 57.202 29.630 0.00 0.00 0.00 2.57
275 276 9.797642 TGATAGCCAGATTGTTTACATATTGAT 57.202 29.630 0.00 0.00 0.00 2.57
277 278 9.797642 ATAGCCAGATTGTTTACATATTGATGA 57.202 29.630 0.00 0.00 36.48 2.92
278 279 8.523915 AGCCAGATTGTTTACATATTGATGAA 57.476 30.769 0.00 0.00 36.48 2.57
279 280 8.627403 AGCCAGATTGTTTACATATTGATGAAG 58.373 33.333 0.00 0.00 36.48 3.02
280 281 8.623903 GCCAGATTGTTTACATATTGATGAAGA 58.376 33.333 0.00 0.00 36.48 2.87
301 302 9.388506 TGAAGAATAAAGTCAGAGATGATTTCC 57.611 33.333 0.00 0.00 0.00 3.13
302 303 8.744568 AAGAATAAAGTCAGAGATGATTTCCC 57.255 34.615 0.00 0.00 0.00 3.97
303 304 7.865820 AGAATAAAGTCAGAGATGATTTCCCA 58.134 34.615 0.00 0.00 0.00 4.37
304 305 7.772757 AGAATAAAGTCAGAGATGATTTCCCAC 59.227 37.037 0.00 0.00 0.00 4.61
305 306 4.916041 AAGTCAGAGATGATTTCCCACA 57.084 40.909 0.00 0.00 0.00 4.17
306 307 4.213564 AGTCAGAGATGATTTCCCACAC 57.786 45.455 0.00 0.00 0.00 3.82
307 308 3.843027 AGTCAGAGATGATTTCCCACACT 59.157 43.478 0.00 0.00 0.00 3.55
308 309 4.288105 AGTCAGAGATGATTTCCCACACTT 59.712 41.667 0.00 0.00 0.00 3.16
309 310 4.633565 GTCAGAGATGATTTCCCACACTTC 59.366 45.833 0.00 0.00 0.00 3.01
310 311 4.286808 TCAGAGATGATTTCCCACACTTCA 59.713 41.667 0.00 0.00 0.00 3.02
311 312 4.634883 CAGAGATGATTTCCCACACTTCAG 59.365 45.833 0.00 0.00 0.00 3.02
312 313 4.533707 AGAGATGATTTCCCACACTTCAGA 59.466 41.667 0.00 0.00 0.00 3.27
313 314 4.583871 AGATGATTTCCCACACTTCAGAC 58.416 43.478 0.00 0.00 0.00 3.51
314 315 4.288105 AGATGATTTCCCACACTTCAGACT 59.712 41.667 0.00 0.00 0.00 3.24
315 316 4.437682 TGATTTCCCACACTTCAGACTT 57.562 40.909 0.00 0.00 0.00 3.01
316 317 4.136796 TGATTTCCCACACTTCAGACTTG 58.863 43.478 0.00 0.00 0.00 3.16
317 318 1.967319 TTCCCACACTTCAGACTTGC 58.033 50.000 0.00 0.00 0.00 4.01
318 319 1.131638 TCCCACACTTCAGACTTGCT 58.868 50.000 0.00 0.00 0.00 3.91
319 320 2.325484 TCCCACACTTCAGACTTGCTA 58.675 47.619 0.00 0.00 0.00 3.49
320 321 2.300152 TCCCACACTTCAGACTTGCTAG 59.700 50.000 0.00 0.00 0.00 3.42
321 322 2.300152 CCCACACTTCAGACTTGCTAGA 59.700 50.000 1.04 0.00 0.00 2.43
322 323 3.244215 CCCACACTTCAGACTTGCTAGAA 60.244 47.826 1.04 0.00 0.00 2.10
323 324 4.564406 CCCACACTTCAGACTTGCTAGAAT 60.564 45.833 1.04 0.00 0.00 2.40
324 325 4.999950 CCACACTTCAGACTTGCTAGAATT 59.000 41.667 1.04 0.00 0.00 2.17
325 326 6.166279 CCACACTTCAGACTTGCTAGAATTA 58.834 40.000 1.04 0.00 0.00 1.40
326 327 6.650807 CCACACTTCAGACTTGCTAGAATTAA 59.349 38.462 1.04 0.00 0.00 1.40
327 328 7.335422 CCACACTTCAGACTTGCTAGAATTAAT 59.665 37.037 1.04 0.00 0.00 1.40
328 329 9.371136 CACACTTCAGACTTGCTAGAATTAATA 57.629 33.333 1.04 0.00 0.00 0.98
329 330 9.372369 ACACTTCAGACTTGCTAGAATTAATAC 57.628 33.333 1.04 0.00 0.00 1.89
330 331 9.371136 CACTTCAGACTTGCTAGAATTAATACA 57.629 33.333 1.04 0.00 0.00 2.29
331 332 9.944376 ACTTCAGACTTGCTAGAATTAATACAA 57.056 29.630 1.04 0.00 0.00 2.41
334 335 9.890629 TCAGACTTGCTAGAATTAATACAATGT 57.109 29.630 1.04 0.00 0.00 2.71
351 352 9.630098 AATACAATGTTTAGCTAATGCATATGC 57.370 29.630 21.09 21.09 42.74 3.14
352 353 6.449698 ACAATGTTTAGCTAATGCATATGCC 58.550 36.000 24.54 8.92 42.74 4.40
353 354 6.040729 ACAATGTTTAGCTAATGCATATGCCA 59.959 34.615 24.54 13.08 42.74 4.92
354 355 5.437289 TGTTTAGCTAATGCATATGCCAC 57.563 39.130 24.54 9.45 42.74 5.01
355 356 4.278170 TGTTTAGCTAATGCATATGCCACC 59.722 41.667 24.54 8.72 42.74 4.61
356 357 1.527034 AGCTAATGCATATGCCACCG 58.473 50.000 24.54 11.72 42.74 4.94
357 358 0.109597 GCTAATGCATATGCCACCGC 60.110 55.000 24.54 17.17 41.18 5.68
358 359 2.749113 GCTAATGCATATGCCACCGCA 61.749 52.381 24.54 5.39 44.02 5.69
368 369 2.825836 CCACCGCATTGGCCTCTC 60.826 66.667 3.32 0.00 43.94 3.20
369 370 2.046023 CACCGCATTGGCCTCTCA 60.046 61.111 3.32 0.00 43.94 3.27
370 371 2.110967 CACCGCATTGGCCTCTCAG 61.111 63.158 3.32 0.00 43.94 3.35
371 372 3.207669 CCGCATTGGCCTCTCAGC 61.208 66.667 3.32 0.00 36.38 4.26
372 373 2.124819 CGCATTGGCCTCTCAGCT 60.125 61.111 3.32 0.00 36.38 4.24
373 374 2.470362 CGCATTGGCCTCTCAGCTG 61.470 63.158 7.63 7.63 36.38 4.24
374 375 2.772691 GCATTGGCCTCTCAGCTGC 61.773 63.158 9.47 0.00 0.00 5.25
375 376 1.378119 CATTGGCCTCTCAGCTGCA 60.378 57.895 9.47 0.00 0.00 4.41
376 377 0.963856 CATTGGCCTCTCAGCTGCAA 60.964 55.000 9.47 6.75 0.00 4.08
377 378 0.033405 ATTGGCCTCTCAGCTGCAAT 60.033 50.000 9.47 8.94 0.00 3.56
378 379 0.963856 TTGGCCTCTCAGCTGCAATG 60.964 55.000 9.47 0.00 0.00 2.82
379 380 1.077930 GGCCTCTCAGCTGCAATGA 60.078 57.895 9.47 3.73 0.00 2.57
380 381 0.465824 GGCCTCTCAGCTGCAATGAT 60.466 55.000 9.47 0.00 0.00 2.45
381 382 0.945813 GCCTCTCAGCTGCAATGATC 59.054 55.000 9.47 0.00 0.00 2.92
382 383 1.746171 GCCTCTCAGCTGCAATGATCA 60.746 52.381 9.47 0.00 0.00 2.92
383 384 2.640184 CCTCTCAGCTGCAATGATCAA 58.360 47.619 9.47 0.00 0.00 2.57
384 385 3.014623 CCTCTCAGCTGCAATGATCAAA 58.985 45.455 9.47 0.00 0.00 2.69
385 386 3.065510 CCTCTCAGCTGCAATGATCAAAG 59.934 47.826 9.47 0.00 0.00 2.77
386 387 3.939592 CTCTCAGCTGCAATGATCAAAGA 59.060 43.478 9.47 1.39 0.00 2.52
387 388 4.524053 TCTCAGCTGCAATGATCAAAGAT 58.476 39.130 9.47 0.00 0.00 2.40
388 389 5.677567 TCTCAGCTGCAATGATCAAAGATA 58.322 37.500 9.47 0.00 0.00 1.98
389 390 6.117488 TCTCAGCTGCAATGATCAAAGATAA 58.883 36.000 9.47 0.00 0.00 1.75
390 391 6.771267 TCTCAGCTGCAATGATCAAAGATAAT 59.229 34.615 9.47 0.00 0.00 1.28
391 392 6.735130 TCAGCTGCAATGATCAAAGATAATG 58.265 36.000 9.47 0.00 0.00 1.90
392 393 5.402568 CAGCTGCAATGATCAAAGATAATGC 59.597 40.000 0.00 3.16 0.00 3.56
393 394 5.302059 AGCTGCAATGATCAAAGATAATGCT 59.698 36.000 0.00 0.00 33.87 3.79
394 395 6.489022 AGCTGCAATGATCAAAGATAATGCTA 59.511 34.615 0.00 0.00 33.87 3.49
395 396 6.802348 GCTGCAATGATCAAAGATAATGCTAG 59.198 38.462 0.00 4.56 33.87 3.42
396 397 6.675026 TGCAATGATCAAAGATAATGCTAGC 58.325 36.000 8.10 8.10 33.87 3.42
397 398 6.263617 TGCAATGATCAAAGATAATGCTAGCA 59.736 34.615 21.85 21.85 33.87 3.49
398 399 7.143340 GCAATGATCAAAGATAATGCTAGCAA 58.857 34.615 23.54 6.52 0.00 3.91
399 400 7.650504 GCAATGATCAAAGATAATGCTAGCAAA 59.349 33.333 23.54 13.65 0.00 3.68
400 401 9.524106 CAATGATCAAAGATAATGCTAGCAAAA 57.476 29.630 23.54 13.25 0.00 2.44
402 403 9.909644 ATGATCAAAGATAATGCTAGCAAAATC 57.090 29.630 23.54 24.28 0.00 2.17
403 404 9.128404 TGATCAAAGATAATGCTAGCAAAATCT 57.872 29.630 27.27 27.27 34.84 2.40
406 407 9.618890 TCAAAGATAATGCTAGCAAAATCTAGT 57.381 29.630 30.41 22.81 38.58 2.57
407 408 9.661187 CAAAGATAATGCTAGCAAAATCTAGTG 57.339 33.333 30.41 26.83 38.58 2.74
408 409 7.432350 AGATAATGCTAGCAAAATCTAGTGC 57.568 36.000 29.71 12.92 38.58 4.40
409 410 4.907879 AATGCTAGCAAAATCTAGTGCC 57.092 40.909 23.54 0.00 41.88 5.01
410 411 3.348647 TGCTAGCAAAATCTAGTGCCA 57.651 42.857 16.84 0.00 41.88 4.92
411 412 3.684908 TGCTAGCAAAATCTAGTGCCAA 58.315 40.909 16.84 0.00 41.88 4.52
412 413 3.691118 TGCTAGCAAAATCTAGTGCCAAG 59.309 43.478 16.84 0.44 41.88 3.61
413 414 3.941483 GCTAGCAAAATCTAGTGCCAAGA 59.059 43.478 10.63 0.00 41.88 3.02
414 415 4.034975 GCTAGCAAAATCTAGTGCCAAGAG 59.965 45.833 10.63 0.00 41.88 2.85
415 416 3.350833 AGCAAAATCTAGTGCCAAGAGG 58.649 45.455 0.00 0.00 41.88 3.69
416 417 2.424956 GCAAAATCTAGTGCCAAGAGGG 59.575 50.000 0.00 0.00 40.85 4.30
417 418 3.873801 GCAAAATCTAGTGCCAAGAGGGA 60.874 47.826 0.00 0.00 40.01 4.20
418 419 4.335416 CAAAATCTAGTGCCAAGAGGGAA 58.665 43.478 0.00 0.00 36.80 3.97
419 420 3.636153 AATCTAGTGCCAAGAGGGAAC 57.364 47.619 0.00 0.00 46.99 3.62
423 424 2.934083 GTGCCAAGAGGGAACACTC 58.066 57.895 0.00 0.00 45.73 3.51
424 425 0.108585 GTGCCAAGAGGGAACACTCA 59.891 55.000 6.84 0.00 45.73 3.41
425 426 0.397941 TGCCAAGAGGGAACACTCAG 59.602 55.000 6.84 0.00 39.97 3.35
426 427 0.957888 GCCAAGAGGGAACACTCAGC 60.958 60.000 6.84 2.95 39.97 4.26
427 428 0.689623 CCAAGAGGGAACACTCAGCT 59.310 55.000 6.84 0.00 39.97 4.24
428 429 1.902508 CCAAGAGGGAACACTCAGCTA 59.097 52.381 6.84 0.00 39.97 3.32
429 430 2.503356 CCAAGAGGGAACACTCAGCTAT 59.497 50.000 6.84 0.00 39.97 2.97
430 431 3.529533 CAAGAGGGAACACTCAGCTATG 58.470 50.000 6.84 0.00 39.97 2.23
431 432 3.107402 AGAGGGAACACTCAGCTATGA 57.893 47.619 6.84 0.00 39.97 2.15
432 433 2.763448 AGAGGGAACACTCAGCTATGAC 59.237 50.000 6.84 0.00 39.97 3.06
433 434 2.497675 GAGGGAACACTCAGCTATGACA 59.502 50.000 0.00 0.00 37.44 3.58
434 435 2.499289 AGGGAACACTCAGCTATGACAG 59.501 50.000 0.00 0.00 0.00 3.51
435 436 2.419297 GGGAACACTCAGCTATGACAGG 60.419 54.545 0.00 0.00 0.00 4.00
436 437 2.275318 GAACACTCAGCTATGACAGGC 58.725 52.381 0.00 0.00 0.00 4.85
437 438 1.269958 ACACTCAGCTATGACAGGCA 58.730 50.000 6.07 0.00 0.00 4.75
438 439 1.066573 ACACTCAGCTATGACAGGCAC 60.067 52.381 6.07 0.00 0.00 5.01
439 440 0.174389 ACTCAGCTATGACAGGCACG 59.826 55.000 6.07 0.00 0.00 5.34
440 441 0.529337 CTCAGCTATGACAGGCACGG 60.529 60.000 6.07 0.00 0.00 4.94
441 442 2.176273 CAGCTATGACAGGCACGGC 61.176 63.158 6.07 0.00 0.00 5.68
451 452 3.936203 GGCACGGCCGATCCCATA 61.936 66.667 35.90 0.00 39.62 2.74
452 453 2.347490 GCACGGCCGATCCCATAT 59.653 61.111 35.90 2.60 0.00 1.78
453 454 1.594833 GCACGGCCGATCCCATATA 59.405 57.895 35.90 0.00 0.00 0.86
454 455 0.178068 GCACGGCCGATCCCATATAT 59.822 55.000 35.90 0.68 0.00 0.86
455 456 1.939974 CACGGCCGATCCCATATATG 58.060 55.000 35.90 11.86 0.00 1.78
456 457 0.178068 ACGGCCGATCCCATATATGC 59.822 55.000 35.90 0.00 0.00 3.14
457 458 0.875908 CGGCCGATCCCATATATGCG 60.876 60.000 24.07 5.46 0.00 4.73
458 459 0.178068 GGCCGATCCCATATATGCGT 59.822 55.000 7.24 0.00 0.00 5.24
459 460 1.406887 GGCCGATCCCATATATGCGTT 60.407 52.381 7.24 0.00 0.00 4.84
460 461 2.356135 GCCGATCCCATATATGCGTTT 58.644 47.619 7.24 0.00 0.00 3.60
461 462 2.095853 GCCGATCCCATATATGCGTTTG 59.904 50.000 7.24 0.00 0.00 2.93
462 463 2.677836 CCGATCCCATATATGCGTTTGG 59.322 50.000 7.24 4.08 0.00 3.28
463 464 3.595173 CGATCCCATATATGCGTTTGGA 58.405 45.455 7.24 8.44 0.00 3.53
464 465 4.191544 CGATCCCATATATGCGTTTGGAT 58.808 43.478 16.11 16.11 33.96 3.41
465 466 4.271049 CGATCCCATATATGCGTTTGGATC 59.729 45.833 24.31 24.31 42.05 3.36
466 467 3.950397 TCCCATATATGCGTTTGGATCC 58.050 45.455 4.20 4.20 0.00 3.36
467 468 3.587061 TCCCATATATGCGTTTGGATCCT 59.413 43.478 14.23 0.00 0.00 3.24
468 469 4.780554 TCCCATATATGCGTTTGGATCCTA 59.219 41.667 14.23 1.56 0.00 2.94
469 470 5.104941 TCCCATATATGCGTTTGGATCCTAG 60.105 44.000 14.23 2.73 0.00 3.02
470 471 5.118990 CCATATATGCGTTTGGATCCTAGG 58.881 45.833 14.23 0.82 0.00 3.02
471 472 2.543777 TATGCGTTTGGATCCTAGGC 57.456 50.000 14.23 17.23 0.00 3.93
472 473 0.532862 ATGCGTTTGGATCCTAGGCG 60.533 55.000 14.23 14.31 0.00 5.52
473 474 1.887707 GCGTTTGGATCCTAGGCGG 60.888 63.158 14.23 0.00 0.00 6.13
474 475 1.227556 CGTTTGGATCCTAGGCGGG 60.228 63.158 14.23 0.00 0.00 6.13
475 476 1.148498 GTTTGGATCCTAGGCGGGG 59.852 63.158 14.23 0.00 0.00 5.73
476 477 1.307517 TTTGGATCCTAGGCGGGGT 60.308 57.895 14.23 0.00 0.00 4.95
477 478 0.917333 TTTGGATCCTAGGCGGGGTT 60.917 55.000 14.23 0.00 0.00 4.11
478 479 1.632018 TTGGATCCTAGGCGGGGTTG 61.632 60.000 14.23 0.00 0.00 3.77
479 480 2.819284 GGATCCTAGGCGGGGTTGG 61.819 68.421 3.84 0.00 0.00 3.77
480 481 2.042261 ATCCTAGGCGGGGTTGGT 59.958 61.111 2.96 0.00 0.00 3.67
481 482 0.761702 GATCCTAGGCGGGGTTGGTA 60.762 60.000 2.96 0.00 0.00 3.25
482 483 0.763223 ATCCTAGGCGGGGTTGGTAG 60.763 60.000 2.96 0.00 0.00 3.18
483 484 2.504519 CTAGGCGGGGTTGGTAGC 59.495 66.667 0.00 0.00 0.00 3.58
484 485 2.284773 TAGGCGGGGTTGGTAGCA 60.285 61.111 0.00 0.00 0.00 3.49
485 486 2.311688 CTAGGCGGGGTTGGTAGCAG 62.312 65.000 0.00 0.00 0.00 4.24
487 488 4.715523 GCGGGGTTGGTAGCAGCA 62.716 66.667 11.00 0.00 0.00 4.41
488 489 2.746277 CGGGGTTGGTAGCAGCAC 60.746 66.667 11.00 6.79 0.00 4.40
489 490 2.361230 GGGGTTGGTAGCAGCACC 60.361 66.667 14.60 14.60 39.20 5.01
490 491 2.361230 GGGTTGGTAGCAGCACCC 60.361 66.667 16.99 16.99 37.84 4.61
491 492 2.746277 GGTTGGTAGCAGCACCCG 60.746 66.667 11.00 0.00 37.84 5.28
492 493 2.345991 GTTGGTAGCAGCACCCGA 59.654 61.111 3.69 0.00 37.84 5.14
493 494 1.078426 GTTGGTAGCAGCACCCGAT 60.078 57.895 3.69 0.00 37.84 4.18
494 495 1.090052 GTTGGTAGCAGCACCCGATC 61.090 60.000 3.69 0.00 37.84 3.69
495 496 2.279517 GGTAGCAGCACCCGATCG 60.280 66.667 8.51 8.51 31.91 3.69
496 497 2.962253 GTAGCAGCACCCGATCGC 60.962 66.667 10.32 0.00 0.00 4.58
497 498 3.457263 TAGCAGCACCCGATCGCA 61.457 61.111 10.32 0.00 0.00 5.10
498 499 3.430565 TAGCAGCACCCGATCGCAG 62.431 63.158 10.32 5.66 0.00 5.18
500 501 4.827087 CAGCACCCGATCGCAGCT 62.827 66.667 17.63 17.63 35.63 4.24
501 502 4.827087 AGCACCCGATCGCAGCTG 62.827 66.667 21.06 10.11 33.67 4.24
503 504 4.147449 CACCCGATCGCAGCTGGA 62.147 66.667 17.12 11.54 0.00 3.86
504 505 3.842923 ACCCGATCGCAGCTGGAG 61.843 66.667 17.12 2.18 0.00 3.86
505 506 3.531207 CCCGATCGCAGCTGGAGA 61.531 66.667 17.12 3.92 0.00 3.71
506 507 2.279120 CCGATCGCAGCTGGAGAC 60.279 66.667 17.12 8.53 0.00 3.36
507 508 2.279120 CGATCGCAGCTGGAGACC 60.279 66.667 17.12 0.00 0.00 3.85
508 509 2.895680 GATCGCAGCTGGAGACCA 59.104 61.111 17.12 0.00 0.00 4.02
518 519 2.591915 TGGAGACCAGGGATCGAAC 58.408 57.895 0.00 0.00 0.00 3.95
519 520 0.976073 TGGAGACCAGGGATCGAACC 60.976 60.000 2.47 2.47 0.00 3.62
536 537 2.604912 ACCCTGGTTCTCCCATTTTC 57.395 50.000 0.00 0.00 44.15 2.29
537 538 2.073776 ACCCTGGTTCTCCCATTTTCT 58.926 47.619 0.00 0.00 44.15 2.52
538 539 2.041755 ACCCTGGTTCTCCCATTTTCTC 59.958 50.000 0.00 0.00 44.15 2.87
539 540 2.310052 CCCTGGTTCTCCCATTTTCTCT 59.690 50.000 0.00 0.00 44.15 3.10
540 541 3.615155 CCTGGTTCTCCCATTTTCTCTC 58.385 50.000 0.00 0.00 44.15 3.20
541 542 3.615155 CTGGTTCTCCCATTTTCTCTCC 58.385 50.000 0.00 0.00 44.15 3.71
542 543 2.986019 TGGTTCTCCCATTTTCTCTCCA 59.014 45.455 0.00 0.00 38.72 3.86
543 544 3.593328 TGGTTCTCCCATTTTCTCTCCAT 59.407 43.478 0.00 0.00 38.72 3.41
544 545 4.044571 TGGTTCTCCCATTTTCTCTCCATT 59.955 41.667 0.00 0.00 38.72 3.16
545 546 5.252863 TGGTTCTCCCATTTTCTCTCCATTA 59.747 40.000 0.00 0.00 38.72 1.90
546 547 6.068853 TGGTTCTCCCATTTTCTCTCCATTAT 60.069 38.462 0.00 0.00 38.72 1.28
547 548 6.836007 GGTTCTCCCATTTTCTCTCCATTATT 59.164 38.462 0.00 0.00 0.00 1.40
548 549 7.343057 GGTTCTCCCATTTTCTCTCCATTATTT 59.657 37.037 0.00 0.00 0.00 1.40
549 550 8.753133 GTTCTCCCATTTTCTCTCCATTATTTT 58.247 33.333 0.00 0.00 0.00 1.82
550 551 8.899887 TCTCCCATTTTCTCTCCATTATTTTT 57.100 30.769 0.00 0.00 0.00 1.94
551 552 9.989296 TCTCCCATTTTCTCTCCATTATTTTTA 57.011 29.630 0.00 0.00 0.00 1.52
560 561 8.583810 TCTCTCCATTATTTTTAATCCGTACG 57.416 34.615 8.69 8.69 0.00 3.67
561 562 8.415553 TCTCTCCATTATTTTTAATCCGTACGA 58.584 33.333 18.76 3.10 0.00 3.43
562 563 8.583810 TCTCCATTATTTTTAATCCGTACGAG 57.416 34.615 18.76 7.15 0.00 4.18
563 564 7.170320 TCTCCATTATTTTTAATCCGTACGAGC 59.830 37.037 18.76 0.00 0.00 5.03
564 565 6.068931 CCATTATTTTTAATCCGTACGAGCG 58.931 40.000 18.76 0.00 0.00 5.03
565 566 3.580794 ATTTTTAATCCGTACGAGCGC 57.419 42.857 18.76 0.00 0.00 5.92
566 567 0.915904 TTTTAATCCGTACGAGCGCG 59.084 50.000 18.76 8.75 44.79 6.86
567 568 1.473857 TTTAATCCGTACGAGCGCGC 61.474 55.000 26.66 26.66 42.48 6.86
568 569 3.812166 TAATCCGTACGAGCGCGCC 62.812 63.158 30.33 18.51 42.48 6.53
584 585 4.047125 CCAGTGGACCGGCCCAAT 62.047 66.667 12.64 7.80 38.06 3.16
585 586 2.675242 CCAGTGGACCGGCCCAATA 61.675 63.158 12.64 0.00 38.06 1.90
586 587 1.531748 CAGTGGACCGGCCCAATAT 59.468 57.895 12.64 0.00 38.06 1.28
587 588 0.819259 CAGTGGACCGGCCCAATATG 60.819 60.000 12.64 7.33 38.06 1.78
588 589 0.986019 AGTGGACCGGCCCAATATGA 60.986 55.000 12.64 0.00 38.06 2.15
589 590 0.818040 GTGGACCGGCCCAATATGAC 60.818 60.000 12.64 0.00 38.06 3.06
590 591 1.597027 GGACCGGCCCAATATGACG 60.597 63.158 0.00 0.00 0.00 4.35
591 592 1.145377 GACCGGCCCAATATGACGT 59.855 57.895 0.00 0.00 0.00 4.34
592 593 0.390124 GACCGGCCCAATATGACGTA 59.610 55.000 0.00 0.00 0.00 3.57
593 594 0.391597 ACCGGCCCAATATGACGTAG 59.608 55.000 0.00 0.00 0.00 3.51
594 595 0.320421 CCGGCCCAATATGACGTAGG 60.320 60.000 0.00 0.00 0.00 3.18
595 596 0.391597 CGGCCCAATATGACGTAGGT 59.608 55.000 0.00 0.00 0.00 3.08
596 597 1.872237 CGGCCCAATATGACGTAGGTG 60.872 57.143 0.00 0.00 0.00 4.00
597 598 1.542547 GGCCCAATATGACGTAGGTGG 60.543 57.143 0.00 0.00 0.00 4.61
598 599 1.414919 GCCCAATATGACGTAGGTGGA 59.585 52.381 8.23 0.00 0.00 4.02
599 600 2.548067 GCCCAATATGACGTAGGTGGAG 60.548 54.545 8.23 2.09 0.00 3.86
600 601 2.037251 CCCAATATGACGTAGGTGGAGG 59.963 54.545 8.23 0.00 0.00 4.30
601 602 2.963101 CCAATATGACGTAGGTGGAGGA 59.037 50.000 0.00 0.00 0.00 3.71
602 603 3.386726 CCAATATGACGTAGGTGGAGGAA 59.613 47.826 0.00 0.00 0.00 3.36
603 604 4.141801 CCAATATGACGTAGGTGGAGGAAA 60.142 45.833 0.00 0.00 0.00 3.13
604 605 5.424757 CAATATGACGTAGGTGGAGGAAAA 58.575 41.667 0.00 0.00 0.00 2.29
605 606 5.687166 ATATGACGTAGGTGGAGGAAAAA 57.313 39.130 0.00 0.00 0.00 1.94
606 607 3.116079 TGACGTAGGTGGAGGAAAAAC 57.884 47.619 0.00 0.00 0.00 2.43
607 608 2.701951 TGACGTAGGTGGAGGAAAAACT 59.298 45.455 0.00 0.00 0.00 2.66
608 609 3.135167 TGACGTAGGTGGAGGAAAAACTT 59.865 43.478 0.00 0.00 0.00 2.66
609 610 3.736720 ACGTAGGTGGAGGAAAAACTTC 58.263 45.455 0.00 0.00 0.00 3.01
610 611 3.135167 ACGTAGGTGGAGGAAAAACTTCA 59.865 43.478 0.00 0.00 0.00 3.02
611 612 3.746492 CGTAGGTGGAGGAAAAACTTCAG 59.254 47.826 0.00 0.00 0.00 3.02
612 613 2.587522 AGGTGGAGGAAAAACTTCAGC 58.412 47.619 0.00 0.00 43.26 4.26
613 614 1.266989 GGTGGAGGAAAAACTTCAGCG 59.733 52.381 0.00 0.00 35.04 5.18
614 615 2.218603 GTGGAGGAAAAACTTCAGCGA 58.781 47.619 0.00 0.00 0.00 4.93
615 616 2.224314 GTGGAGGAAAAACTTCAGCGAG 59.776 50.000 0.00 0.00 0.00 5.03
616 617 2.104111 TGGAGGAAAAACTTCAGCGAGA 59.896 45.455 0.00 0.00 0.00 4.04
617 618 2.739379 GGAGGAAAAACTTCAGCGAGAG 59.261 50.000 0.00 0.00 0.00 3.20
618 619 3.394719 GAGGAAAAACTTCAGCGAGAGT 58.605 45.455 0.00 0.00 0.00 3.24
619 620 3.809905 AGGAAAAACTTCAGCGAGAGTT 58.190 40.909 0.00 0.00 0.00 3.01
620 621 3.810386 AGGAAAAACTTCAGCGAGAGTTC 59.190 43.478 0.00 0.00 0.00 3.01
641 642 2.087646 CCCTCTCACCTTGCTTAAAGC 58.912 52.381 0.00 0.00 42.82 3.51
688 689 2.202987 GCCCACCTGAGCAGATCG 60.203 66.667 0.00 0.00 0.00 3.69
689 690 2.202987 CCCACCTGAGCAGATCGC 60.203 66.667 0.00 1.92 42.91 4.58
692 693 1.079612 CACCTGAGCAGATCGCACA 60.080 57.895 11.20 9.87 46.13 4.57
723 724 4.044439 CAGAGCTGGGCTGGGCTT 62.044 66.667 0.00 0.00 39.88 4.35
724 725 4.044439 AGAGCTGGGCTGGGCTTG 62.044 66.667 0.00 0.00 39.88 4.01
739 740 3.447586 TGGGCTTGCACTTACTCTACTAG 59.552 47.826 0.00 0.00 0.00 2.57
762 763 2.752358 CAGGCTGGGCTCAACTGA 59.248 61.111 11.54 0.00 32.80 3.41
783 784 2.252260 CCAGTTCAAACGGCTGCG 59.748 61.111 0.00 0.00 0.00 5.18
829 830 3.879912 TTCGGTCCGAAGTCACTTC 57.120 52.632 22.76 7.56 41.05 3.01
993 1023 2.445654 CTCCCCTGCCCTCCTCTC 60.446 72.222 0.00 0.00 0.00 3.20
1020 1050 4.838152 CTCCCCGCCATGGACGTG 62.838 72.222 18.40 9.96 42.00 4.49
1036 1066 1.613317 CGTGCTACTCCCACCCATCA 61.613 60.000 0.00 0.00 0.00 3.07
1042 1072 0.625849 ACTCCCACCCATCAATCCAC 59.374 55.000 0.00 0.00 0.00 4.02
1048 1078 0.557729 ACCCATCAATCCACCCATCC 59.442 55.000 0.00 0.00 0.00 3.51
1049 1079 0.178953 CCCATCAATCCACCCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
1052 1082 1.496001 CATCAATCCACCCATCCCTCA 59.504 52.381 0.00 0.00 0.00 3.86
1053 1083 1.216064 TCAATCCACCCATCCCTCAG 58.784 55.000 0.00 0.00 0.00 3.35
1054 1084 0.466922 CAATCCACCCATCCCTCAGC 60.467 60.000 0.00 0.00 0.00 4.26
1055 1085 1.987807 AATCCACCCATCCCTCAGCG 61.988 60.000 0.00 0.00 0.00 5.18
1056 1086 4.864334 CCACCCATCCCTCAGCGC 62.864 72.222 0.00 0.00 0.00 5.92
1057 1087 3.790437 CACCCATCCCTCAGCGCT 61.790 66.667 2.64 2.64 0.00 5.92
1097 1131 3.041946 CCCATTACTCTCCACCTAGCTT 58.958 50.000 0.00 0.00 0.00 3.74
1108 1142 2.073816 CACCTAGCTTAACAACCACCG 58.926 52.381 0.00 0.00 0.00 4.94
1136 1170 0.453390 GCTGCTATGGCTTCCAACAC 59.547 55.000 1.68 0.00 36.95 3.32
1138 1172 0.676466 TGCTATGGCTTCCAACACCG 60.676 55.000 1.68 0.00 36.95 4.94
1293 1333 3.692406 GCGGAGGACCTGGTCGTT 61.692 66.667 21.71 12.26 32.65 3.85
1332 1375 2.520741 GAGGAGGGCGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1528 1571 3.784511 CCAAGTGAGGCCATCTATCAT 57.215 47.619 5.01 0.00 0.00 2.45
1529 1572 3.672808 CCAAGTGAGGCCATCTATCATC 58.327 50.000 5.01 0.00 0.00 2.92
1613 1660 3.461773 CGGGCCGTCTGGAGATGT 61.462 66.667 19.97 0.00 37.49 3.06
1721 1772 8.718102 ATTGCATTTATATGTATACGTCCTCC 57.282 34.615 0.00 0.00 34.12 4.30
1722 1773 7.476540 TGCATTTATATGTATACGTCCTCCT 57.523 36.000 0.00 0.00 34.12 3.69
1731 1787 1.747709 TACGTCCTCCTAGTGTCTGC 58.252 55.000 0.00 0.00 0.00 4.26
1784 1840 5.163622 CCTCATGTGCGGTTCTGAAATATTT 60.164 40.000 0.00 0.00 0.00 1.40
1785 1841 5.639757 TCATGTGCGGTTCTGAAATATTTG 58.360 37.500 5.17 0.00 0.00 2.32
1787 1843 3.179048 GTGCGGTTCTGAAATATTTGCC 58.821 45.455 5.17 0.00 0.00 4.52
1880 1945 7.572759 TCACTTTTTATGTAACTGCTTTCGAG 58.427 34.615 0.00 0.00 0.00 4.04
1884 1949 5.718649 TTATGTAACTGCTTTCGAGCATC 57.281 39.130 1.10 0.00 44.47 3.91
1903 1973 6.812998 AGCATCAATTTAACAGCAATGCTAT 58.187 32.000 7.70 2.34 44.64 2.97
1950 2020 7.857885 GCAATTAGTTTTATAGGCTGACATGAC 59.142 37.037 0.00 0.00 0.00 3.06
1963 2033 4.553547 GCTGACATGACAGTCTGTGTTTTC 60.554 45.833 22.99 2.52 40.56 2.29
1971 2041 7.482654 TGACAGTCTGTGTTTTCTTAGATTG 57.517 36.000 11.04 0.00 40.56 2.67
1978 2048 7.536622 GTCTGTGTTTTCTTAGATTGCAGATTG 59.463 37.037 0.00 0.00 33.82 2.67
1985 2055 9.897744 TTTTCTTAGATTGCAGATTGTGTTTAG 57.102 29.630 0.00 0.00 0.00 1.85
2069 2141 4.864704 AATGCACGGTGAACCTTTTTAT 57.135 36.364 13.29 0.00 0.00 1.40
2070 2142 5.968528 AATGCACGGTGAACCTTTTTATA 57.031 34.783 13.29 0.00 0.00 0.98
2076 2148 8.832521 TGCACGGTGAACCTTTTTATAATATAG 58.167 33.333 13.29 0.00 0.00 1.31
2077 2149 8.287503 GCACGGTGAACCTTTTTATAATATAGG 58.712 37.037 13.29 6.52 0.00 2.57
2079 2151 8.496916 ACGGTGAACCTTTTTATAATATAGGGT 58.503 33.333 10.87 5.89 0.00 4.34
2196 2271 9.117145 GAAAAAGAAAAACAGCAAAGAAAAAGG 57.883 29.630 0.00 0.00 0.00 3.11
2234 2309 4.239304 ACCGAAACAAAACCACTGAAAAC 58.761 39.130 0.00 0.00 0.00 2.43
2236 2311 4.238514 CGAAACAAAACCACTGAAAACCA 58.761 39.130 0.00 0.00 0.00 3.67
2240 2315 3.119637 ACAAAACCACTGAAAACCAGACG 60.120 43.478 0.00 0.00 45.78 4.18
2290 2365 5.013079 TCCCTACAGAAGAAAGAAGATGCAA 59.987 40.000 0.00 0.00 0.00 4.08
2291 2366 5.123027 CCCTACAGAAGAAAGAAGATGCAAC 59.877 44.000 0.00 0.00 0.00 4.17
2325 2400 2.410322 AATCAACTGGCTCCACCGCA 62.410 55.000 0.00 0.00 43.94 5.69
2340 2415 1.498865 CCGCAGGCATTGTATCGACC 61.499 60.000 0.00 0.00 46.14 4.79
2342 2417 1.597742 GCAGGCATTGTATCGACCAT 58.402 50.000 0.00 0.00 0.00 3.55
2352 2427 0.813610 TATCGACCATTTGCTGCCCG 60.814 55.000 0.00 0.00 0.00 6.13
2358 2433 4.418328 ATTTGCTGCCCGCGGGTA 62.418 61.111 42.53 38.18 43.27 3.69
2380 2455 4.781934 ACCAAATAGGACCTGTTATCAGC 58.218 43.478 3.53 0.00 41.22 4.26
2411 2486 6.376018 CCTAGTCACTACTTCTACAAGCTCTT 59.624 42.308 0.00 0.00 37.15 2.85
2476 2551 1.189446 CGACAACGAGTTTTCCTCACG 59.811 52.381 0.00 0.00 40.48 4.35
2477 2552 1.525619 GACAACGAGTTTTCCTCACGG 59.474 52.381 0.00 0.00 40.48 4.94
2504 2579 2.481276 CGTCGATGTATGCAGGAGGAAA 60.481 50.000 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.687081 TGTTTTCGTTTCCACTCTACATTT 57.313 33.333 0.00 0.00 0.00 2.32
1 2 6.687081 TTGTTTTCGTTTCCACTCTACATT 57.313 33.333 0.00 0.00 0.00 2.71
2 3 6.094325 TGTTTGTTTTCGTTTCCACTCTACAT 59.906 34.615 0.00 0.00 0.00 2.29
3 4 5.411977 TGTTTGTTTTCGTTTCCACTCTACA 59.588 36.000 0.00 0.00 0.00 2.74
4 5 5.871539 TGTTTGTTTTCGTTTCCACTCTAC 58.128 37.500 0.00 0.00 0.00 2.59
5 6 6.687081 ATGTTTGTTTTCGTTTCCACTCTA 57.313 33.333 0.00 0.00 0.00 2.43
6 7 5.576447 ATGTTTGTTTTCGTTTCCACTCT 57.424 34.783 0.00 0.00 0.00 3.24
7 8 7.190871 TCTTATGTTTGTTTTCGTTTCCACTC 58.809 34.615 0.00 0.00 0.00 3.51
8 9 7.090953 TCTTATGTTTGTTTTCGTTTCCACT 57.909 32.000 0.00 0.00 0.00 4.00
9 10 7.273815 TGTTCTTATGTTTGTTTTCGTTTCCAC 59.726 33.333 0.00 0.00 0.00 4.02
10 11 7.313646 TGTTCTTATGTTTGTTTTCGTTTCCA 58.686 30.769 0.00 0.00 0.00 3.53
11 12 7.743520 TGTTCTTATGTTTGTTTTCGTTTCC 57.256 32.000 0.00 0.00 0.00 3.13
12 13 7.839358 GCTTGTTCTTATGTTTGTTTTCGTTTC 59.161 33.333 0.00 0.00 0.00 2.78
13 14 7.329717 TGCTTGTTCTTATGTTTGTTTTCGTTT 59.670 29.630 0.00 0.00 0.00 3.60
14 15 6.809196 TGCTTGTTCTTATGTTTGTTTTCGTT 59.191 30.769 0.00 0.00 0.00 3.85
15 16 6.326375 TGCTTGTTCTTATGTTTGTTTTCGT 58.674 32.000 0.00 0.00 0.00 3.85
16 17 6.804534 TGCTTGTTCTTATGTTTGTTTTCG 57.195 33.333 0.00 0.00 0.00 3.46
17 18 9.818796 TTTTTGCTTGTTCTTATGTTTGTTTTC 57.181 25.926 0.00 0.00 0.00 2.29
68 69 7.862512 TGCATTTTGTTTCTTCTCCATTTTT 57.137 28.000 0.00 0.00 0.00 1.94
69 70 7.769970 TCTTGCATTTTGTTTCTTCTCCATTTT 59.230 29.630 0.00 0.00 0.00 1.82
70 71 7.274447 TCTTGCATTTTGTTTCTTCTCCATTT 58.726 30.769 0.00 0.00 0.00 2.32
71 72 6.819284 TCTTGCATTTTGTTTCTTCTCCATT 58.181 32.000 0.00 0.00 0.00 3.16
72 73 6.409524 TCTTGCATTTTGTTTCTTCTCCAT 57.590 33.333 0.00 0.00 0.00 3.41
73 74 5.850557 TCTTGCATTTTGTTTCTTCTCCA 57.149 34.783 0.00 0.00 0.00 3.86
74 75 6.980397 TCTTTCTTGCATTTTGTTTCTTCTCC 59.020 34.615 0.00 0.00 0.00 3.71
75 76 7.992180 TCTTTCTTGCATTTTGTTTCTTCTC 57.008 32.000 0.00 0.00 0.00 2.87
76 77 8.823818 CATTCTTTCTTGCATTTTGTTTCTTCT 58.176 29.630 0.00 0.00 0.00 2.85
77 78 8.819974 TCATTCTTTCTTGCATTTTGTTTCTTC 58.180 29.630 0.00 0.00 0.00 2.87
78 79 8.721019 TCATTCTTTCTTGCATTTTGTTTCTT 57.279 26.923 0.00 0.00 0.00 2.52
79 80 8.721019 TTCATTCTTTCTTGCATTTTGTTTCT 57.279 26.923 0.00 0.00 0.00 2.52
80 81 9.771915 TTTTCATTCTTTCTTGCATTTTGTTTC 57.228 25.926 0.00 0.00 0.00 2.78
146 147 4.200092 GAGGCTATTCGATCCAGGTTTTT 58.800 43.478 0.00 0.00 0.00 1.94
147 148 3.199946 TGAGGCTATTCGATCCAGGTTTT 59.800 43.478 0.00 0.00 0.00 2.43
148 149 2.771943 TGAGGCTATTCGATCCAGGTTT 59.228 45.455 0.00 0.00 0.00 3.27
149 150 2.398588 TGAGGCTATTCGATCCAGGTT 58.601 47.619 0.00 0.00 0.00 3.50
150 151 2.088104 TGAGGCTATTCGATCCAGGT 57.912 50.000 0.00 0.00 0.00 4.00
151 152 2.366916 ACTTGAGGCTATTCGATCCAGG 59.633 50.000 0.00 0.00 0.00 4.45
152 153 3.742433 ACTTGAGGCTATTCGATCCAG 57.258 47.619 0.00 0.00 0.00 3.86
153 154 3.574396 CCTACTTGAGGCTATTCGATCCA 59.426 47.826 0.00 0.00 38.96 3.41
154 155 3.827302 TCCTACTTGAGGCTATTCGATCC 59.173 47.826 0.00 0.00 46.25 3.36
155 156 4.614078 CGTCCTACTTGAGGCTATTCGATC 60.614 50.000 0.00 0.00 46.25 3.69
156 157 3.253677 CGTCCTACTTGAGGCTATTCGAT 59.746 47.826 0.00 0.00 46.25 3.59
157 158 2.617308 CGTCCTACTTGAGGCTATTCGA 59.383 50.000 0.00 0.00 46.25 3.71
158 159 2.859032 GCGTCCTACTTGAGGCTATTCG 60.859 54.545 0.00 0.00 46.25 3.34
159 160 2.745102 GCGTCCTACTTGAGGCTATTC 58.255 52.381 0.00 0.00 46.25 1.75
160 161 1.067212 CGCGTCCTACTTGAGGCTATT 59.933 52.381 0.00 0.00 46.25 1.73
161 162 0.669077 CGCGTCCTACTTGAGGCTAT 59.331 55.000 0.00 0.00 46.25 2.97
162 163 2.001361 GCGCGTCCTACTTGAGGCTA 62.001 60.000 8.43 0.00 46.25 3.93
163 164 2.885861 CGCGTCCTACTTGAGGCT 59.114 61.111 0.00 0.00 46.25 4.58
164 165 2.886124 GCGCGTCCTACTTGAGGC 60.886 66.667 8.43 0.00 46.25 4.70
166 167 1.381928 TAGGGCGCGTCCTACTTGAG 61.382 60.000 34.63 0.00 38.30 3.02
167 168 1.378911 TAGGGCGCGTCCTACTTGA 60.379 57.895 34.63 15.94 38.30 3.02
168 169 3.203442 TAGGGCGCGTCCTACTTG 58.797 61.111 34.63 0.00 38.30 3.16
172 173 1.252904 AAGTTGTAGGGCGCGTCCTA 61.253 55.000 34.63 34.63 38.30 2.94
173 174 1.252904 TAAGTTGTAGGGCGCGTCCT 61.253 55.000 37.18 37.18 40.79 3.85
174 175 1.080435 GTAAGTTGTAGGGCGCGTCC 61.080 60.000 25.39 25.39 0.00 4.79
175 176 1.080435 GGTAAGTTGTAGGGCGCGTC 61.080 60.000 8.43 4.38 0.00 5.19
176 177 1.079612 GGTAAGTTGTAGGGCGCGT 60.080 57.895 8.43 0.00 0.00 6.01
177 178 1.079681 TGGTAAGTTGTAGGGCGCG 60.080 57.895 0.00 0.00 0.00 6.86
178 179 0.320946 TGTGGTAAGTTGTAGGGCGC 60.321 55.000 0.00 0.00 0.00 6.53
179 180 2.073816 CTTGTGGTAAGTTGTAGGGCG 58.926 52.381 0.00 0.00 0.00 6.13
180 181 3.072211 GTCTTGTGGTAAGTTGTAGGGC 58.928 50.000 0.00 0.00 0.00 5.19
181 182 3.323243 CGTCTTGTGGTAAGTTGTAGGG 58.677 50.000 0.00 0.00 0.00 3.53
182 183 3.006110 TCCGTCTTGTGGTAAGTTGTAGG 59.994 47.826 0.00 0.00 0.00 3.18
183 184 3.985925 GTCCGTCTTGTGGTAAGTTGTAG 59.014 47.826 0.00 0.00 0.00 2.74
184 185 3.243839 GGTCCGTCTTGTGGTAAGTTGTA 60.244 47.826 0.00 0.00 0.00 2.41
185 186 2.484241 GGTCCGTCTTGTGGTAAGTTGT 60.484 50.000 0.00 0.00 0.00 3.32
186 187 2.140717 GGTCCGTCTTGTGGTAAGTTG 58.859 52.381 0.00 0.00 0.00 3.16
187 188 1.071228 GGGTCCGTCTTGTGGTAAGTT 59.929 52.381 0.00 0.00 0.00 2.66
188 189 0.683412 GGGTCCGTCTTGTGGTAAGT 59.317 55.000 0.00 0.00 0.00 2.24
189 190 0.974383 AGGGTCCGTCTTGTGGTAAG 59.026 55.000 0.00 0.00 0.00 2.34
190 191 2.173519 CTAGGGTCCGTCTTGTGGTAA 58.826 52.381 0.00 0.00 0.00 2.85
191 192 1.617804 CCTAGGGTCCGTCTTGTGGTA 60.618 57.143 0.00 0.00 0.00 3.25
192 193 0.903454 CCTAGGGTCCGTCTTGTGGT 60.903 60.000 0.00 0.00 0.00 4.16
193 194 0.903454 ACCTAGGGTCCGTCTTGTGG 60.903 60.000 14.81 0.00 0.00 4.17
194 195 0.246635 CACCTAGGGTCCGTCTTGTG 59.753 60.000 14.81 0.00 31.02 3.33
195 196 0.903454 CCACCTAGGGTCCGTCTTGT 60.903 60.000 14.81 0.00 31.02 3.16
196 197 0.613853 TCCACCTAGGGTCCGTCTTG 60.614 60.000 14.81 0.00 38.24 3.02
197 198 0.324460 CTCCACCTAGGGTCCGTCTT 60.324 60.000 14.81 0.00 38.24 3.01
198 199 1.306970 CTCCACCTAGGGTCCGTCT 59.693 63.158 14.81 0.00 38.24 4.18
199 200 0.614134 AACTCCACCTAGGGTCCGTC 60.614 60.000 14.81 0.00 38.24 4.79
200 201 0.178912 AAACTCCACCTAGGGTCCGT 60.179 55.000 14.81 1.87 38.24 4.69
201 202 0.981943 AAAACTCCACCTAGGGTCCG 59.018 55.000 14.81 1.19 38.24 4.79
233 234 9.412460 TCTGGCTATCATTTGATGAATAAAGTT 57.588 29.630 3.30 0.00 43.50 2.66
234 235 8.985315 TCTGGCTATCATTTGATGAATAAAGT 57.015 30.769 3.30 0.00 43.50 2.66
237 238 9.358406 ACAATCTGGCTATCATTTGATGAATAA 57.642 29.630 3.30 0.00 43.50 1.40
238 239 8.929260 ACAATCTGGCTATCATTTGATGAATA 57.071 30.769 3.30 0.00 43.50 1.75
239 240 7.834881 ACAATCTGGCTATCATTTGATGAAT 57.165 32.000 3.30 0.00 43.50 2.57
240 241 7.649533 AACAATCTGGCTATCATTTGATGAA 57.350 32.000 3.30 0.00 43.50 2.57
241 242 7.649533 AAACAATCTGGCTATCATTTGATGA 57.350 32.000 3.30 0.00 44.55 2.92
242 243 8.407832 TGTAAACAATCTGGCTATCATTTGATG 58.592 33.333 3.30 0.00 36.05 3.07
243 244 8.523915 TGTAAACAATCTGGCTATCATTTGAT 57.476 30.769 0.00 0.00 38.51 2.57
244 245 7.936496 TGTAAACAATCTGGCTATCATTTGA 57.064 32.000 0.00 0.00 0.00 2.69
248 249 9.797642 TCAATATGTAAACAATCTGGCTATCAT 57.202 29.630 0.00 0.00 0.00 2.45
249 250 9.797642 ATCAATATGTAAACAATCTGGCTATCA 57.202 29.630 0.00 0.00 0.00 2.15
251 252 9.797642 TCATCAATATGTAAACAATCTGGCTAT 57.202 29.630 0.00 0.00 34.50 2.97
252 253 9.625747 TTCATCAATATGTAAACAATCTGGCTA 57.374 29.630 0.00 0.00 34.50 3.93
253 254 8.523915 TTCATCAATATGTAAACAATCTGGCT 57.476 30.769 0.00 0.00 34.50 4.75
254 255 8.623903 TCTTCATCAATATGTAAACAATCTGGC 58.376 33.333 0.00 0.00 34.50 4.85
275 276 9.388506 GGAAATCATCTCTGACTTTATTCTTCA 57.611 33.333 0.00 0.00 33.22 3.02
276 277 8.835439 GGGAAATCATCTCTGACTTTATTCTTC 58.165 37.037 0.00 0.00 33.22 2.87
277 278 8.331740 TGGGAAATCATCTCTGACTTTATTCTT 58.668 33.333 0.00 0.00 33.22 2.52
278 279 7.772757 GTGGGAAATCATCTCTGACTTTATTCT 59.227 37.037 0.00 0.00 33.22 2.40
279 280 7.554118 TGTGGGAAATCATCTCTGACTTTATTC 59.446 37.037 0.00 0.00 33.22 1.75
280 281 7.337942 GTGTGGGAAATCATCTCTGACTTTATT 59.662 37.037 0.00 0.00 33.22 1.40
281 282 6.825721 GTGTGGGAAATCATCTCTGACTTTAT 59.174 38.462 0.00 0.00 33.22 1.40
282 283 6.013379 AGTGTGGGAAATCATCTCTGACTTTA 60.013 38.462 0.00 0.00 33.22 1.85
283 284 5.006386 GTGTGGGAAATCATCTCTGACTTT 58.994 41.667 0.00 0.00 33.22 2.66
284 285 4.288105 AGTGTGGGAAATCATCTCTGACTT 59.712 41.667 0.00 0.00 33.22 3.01
285 286 3.843027 AGTGTGGGAAATCATCTCTGACT 59.157 43.478 0.00 0.00 33.22 3.41
286 287 4.213564 AGTGTGGGAAATCATCTCTGAC 57.786 45.455 0.00 0.00 33.22 3.51
287 288 4.286808 TGAAGTGTGGGAAATCATCTCTGA 59.713 41.667 0.00 0.00 35.41 3.27
288 289 4.582869 TGAAGTGTGGGAAATCATCTCTG 58.417 43.478 0.00 0.00 0.00 3.35
289 290 4.533707 TCTGAAGTGTGGGAAATCATCTCT 59.466 41.667 0.00 0.00 0.00 3.10
290 291 4.633565 GTCTGAAGTGTGGGAAATCATCTC 59.366 45.833 0.00 0.00 0.00 2.75
291 292 4.288105 AGTCTGAAGTGTGGGAAATCATCT 59.712 41.667 0.00 0.00 0.00 2.90
292 293 4.583871 AGTCTGAAGTGTGGGAAATCATC 58.416 43.478 0.00 0.00 0.00 2.92
293 294 4.647564 AGTCTGAAGTGTGGGAAATCAT 57.352 40.909 0.00 0.00 0.00 2.45
294 295 4.136796 CAAGTCTGAAGTGTGGGAAATCA 58.863 43.478 0.00 0.00 0.00 2.57
295 296 3.057946 GCAAGTCTGAAGTGTGGGAAATC 60.058 47.826 0.00 0.00 0.00 2.17
296 297 2.887152 GCAAGTCTGAAGTGTGGGAAAT 59.113 45.455 0.00 0.00 0.00 2.17
297 298 2.092429 AGCAAGTCTGAAGTGTGGGAAA 60.092 45.455 0.00 0.00 0.00 3.13
298 299 1.490490 AGCAAGTCTGAAGTGTGGGAA 59.510 47.619 0.00 0.00 0.00 3.97
299 300 1.131638 AGCAAGTCTGAAGTGTGGGA 58.868 50.000 0.00 0.00 0.00 4.37
300 301 2.300152 TCTAGCAAGTCTGAAGTGTGGG 59.700 50.000 0.00 0.00 0.00 4.61
301 302 3.667497 TCTAGCAAGTCTGAAGTGTGG 57.333 47.619 0.00 0.00 0.00 4.17
302 303 7.658179 TTAATTCTAGCAAGTCTGAAGTGTG 57.342 36.000 0.00 0.00 0.00 3.82
303 304 9.372369 GTATTAATTCTAGCAAGTCTGAAGTGT 57.628 33.333 0.00 0.00 0.00 3.55
304 305 9.371136 TGTATTAATTCTAGCAAGTCTGAAGTG 57.629 33.333 0.00 0.00 0.00 3.16
305 306 9.944376 TTGTATTAATTCTAGCAAGTCTGAAGT 57.056 29.630 0.00 0.00 0.00 3.01
308 309 9.890629 ACATTGTATTAATTCTAGCAAGTCTGA 57.109 29.630 0.00 0.00 0.00 3.27
325 326 9.630098 GCATATGCATTAGCTAAACATTGTATT 57.370 29.630 22.84 8.05 42.74 1.89
326 327 8.246180 GGCATATGCATTAGCTAAACATTGTAT 58.754 33.333 28.07 17.29 44.36 2.29
327 328 7.230309 TGGCATATGCATTAGCTAAACATTGTA 59.770 33.333 28.07 12.52 44.36 2.41
328 329 6.040729 TGGCATATGCATTAGCTAAACATTGT 59.959 34.615 28.07 13.68 44.36 2.71
329 330 6.364165 GTGGCATATGCATTAGCTAAACATTG 59.636 38.462 28.07 20.19 44.36 2.82
330 331 6.449698 GTGGCATATGCATTAGCTAAACATT 58.550 36.000 28.07 12.66 44.36 2.71
331 332 5.047802 GGTGGCATATGCATTAGCTAAACAT 60.048 40.000 28.07 21.96 44.36 2.71
332 333 4.278170 GGTGGCATATGCATTAGCTAAACA 59.722 41.667 28.07 12.25 44.36 2.83
333 334 4.613622 CGGTGGCATATGCATTAGCTAAAC 60.614 45.833 28.07 6.59 44.36 2.01
334 335 3.501828 CGGTGGCATATGCATTAGCTAAA 59.498 43.478 28.07 0.00 44.36 1.85
335 336 3.073678 CGGTGGCATATGCATTAGCTAA 58.926 45.455 28.07 8.99 44.36 3.09
336 337 2.698803 CGGTGGCATATGCATTAGCTA 58.301 47.619 28.07 12.45 44.36 3.32
337 338 1.527034 CGGTGGCATATGCATTAGCT 58.473 50.000 28.07 0.00 44.36 3.32
338 339 0.109597 GCGGTGGCATATGCATTAGC 60.110 55.000 28.07 21.94 44.36 3.09
339 340 1.237533 TGCGGTGGCATATGCATTAG 58.762 50.000 28.07 16.91 46.21 1.73
340 341 3.410960 TGCGGTGGCATATGCATTA 57.589 47.368 28.07 11.76 46.21 1.90
341 342 4.256462 TGCGGTGGCATATGCATT 57.744 50.000 28.07 0.00 46.21 3.56
351 352 2.825836 GAGAGGCCAATGCGGTGG 60.826 66.667 5.01 1.07 42.05 4.61
352 353 2.046023 TGAGAGGCCAATGCGGTG 60.046 61.111 5.01 0.00 38.85 4.94
353 354 2.270205 CTGAGAGGCCAATGCGGT 59.730 61.111 5.01 0.00 38.85 5.68
354 355 3.207669 GCTGAGAGGCCAATGCGG 61.208 66.667 5.01 0.00 38.85 5.69
355 356 2.124819 AGCTGAGAGGCCAATGCG 60.125 61.111 5.01 0.00 38.85 4.73
356 357 2.772691 GCAGCTGAGAGGCCAATGC 61.773 63.158 20.43 1.36 0.00 3.56
357 358 0.963856 TTGCAGCTGAGAGGCCAATG 60.964 55.000 20.43 0.00 0.00 2.82
358 359 0.033405 ATTGCAGCTGAGAGGCCAAT 60.033 50.000 20.43 13.22 0.00 3.16
359 360 0.963856 CATTGCAGCTGAGAGGCCAA 60.964 55.000 20.43 11.32 0.00 4.52
360 361 1.378119 CATTGCAGCTGAGAGGCCA 60.378 57.895 20.43 0.83 0.00 5.36
361 362 0.465824 ATCATTGCAGCTGAGAGGCC 60.466 55.000 20.43 0.00 0.00 5.19
362 363 0.945813 GATCATTGCAGCTGAGAGGC 59.054 55.000 20.43 0.98 0.00 4.70
363 364 2.327200 TGATCATTGCAGCTGAGAGG 57.673 50.000 20.43 6.48 0.00 3.69
364 365 3.939592 TCTTTGATCATTGCAGCTGAGAG 59.060 43.478 20.43 3.57 0.00 3.20
365 366 3.946606 TCTTTGATCATTGCAGCTGAGA 58.053 40.909 20.43 9.47 0.00 3.27
366 367 4.902443 ATCTTTGATCATTGCAGCTGAG 57.098 40.909 20.43 3.58 0.00 3.35
367 368 6.734871 GCATTATCTTTGATCATTGCAGCTGA 60.735 38.462 20.43 0.00 0.00 4.26
368 369 5.402568 GCATTATCTTTGATCATTGCAGCTG 59.597 40.000 10.11 10.11 0.00 4.24
369 370 5.302059 AGCATTATCTTTGATCATTGCAGCT 59.698 36.000 0.00 0.00 0.00 4.24
370 371 5.529791 AGCATTATCTTTGATCATTGCAGC 58.470 37.500 0.00 0.00 0.00 5.25
371 372 6.802348 GCTAGCATTATCTTTGATCATTGCAG 59.198 38.462 10.63 0.00 0.00 4.41
372 373 6.263617 TGCTAGCATTATCTTTGATCATTGCA 59.736 34.615 14.93 0.00 0.00 4.08
373 374 6.675026 TGCTAGCATTATCTTTGATCATTGC 58.325 36.000 14.93 0.00 0.00 3.56
374 375 9.524106 TTTTGCTAGCATTATCTTTGATCATTG 57.476 29.630 20.13 0.00 0.00 2.82
376 377 9.909644 GATTTTGCTAGCATTATCTTTGATCAT 57.090 29.630 20.13 0.00 0.00 2.45
377 378 9.128404 AGATTTTGCTAGCATTATCTTTGATCA 57.872 29.630 25.19 4.89 0.00 2.92
380 381 9.618890 ACTAGATTTTGCTAGCATTATCTTTGA 57.381 29.630 30.93 19.88 41.21 2.69
381 382 9.661187 CACTAGATTTTGCTAGCATTATCTTTG 57.339 33.333 30.93 26.34 41.21 2.77
382 383 8.348507 GCACTAGATTTTGCTAGCATTATCTTT 58.651 33.333 30.93 21.55 41.21 2.52
383 384 7.040823 GGCACTAGATTTTGCTAGCATTATCTT 60.041 37.037 30.93 19.61 41.21 2.40
384 385 6.429385 GGCACTAGATTTTGCTAGCATTATCT 59.571 38.462 29.67 29.67 41.21 1.98
385 386 6.205464 TGGCACTAGATTTTGCTAGCATTATC 59.795 38.462 20.13 21.71 41.21 1.75
386 387 6.064060 TGGCACTAGATTTTGCTAGCATTAT 58.936 36.000 20.13 14.64 41.21 1.28
387 388 5.436175 TGGCACTAGATTTTGCTAGCATTA 58.564 37.500 20.13 10.06 41.21 1.90
388 389 4.272489 TGGCACTAGATTTTGCTAGCATT 58.728 39.130 20.13 6.65 41.21 3.56
389 390 3.889815 TGGCACTAGATTTTGCTAGCAT 58.110 40.909 20.13 3.01 41.21 3.79
390 391 3.348647 TGGCACTAGATTTTGCTAGCA 57.651 42.857 14.93 14.93 41.21 3.49
391 392 3.941483 TCTTGGCACTAGATTTTGCTAGC 59.059 43.478 8.10 8.10 41.21 3.42
392 393 4.574013 CCTCTTGGCACTAGATTTTGCTAG 59.426 45.833 0.00 0.00 42.77 3.42
393 394 4.517285 CCTCTTGGCACTAGATTTTGCTA 58.483 43.478 0.00 0.00 38.85 3.49
394 395 3.350833 CCTCTTGGCACTAGATTTTGCT 58.649 45.455 0.00 0.00 38.85 3.91
395 396 2.424956 CCCTCTTGGCACTAGATTTTGC 59.575 50.000 0.00 0.00 38.06 3.68
396 397 3.955471 TCCCTCTTGGCACTAGATTTTG 58.045 45.455 0.00 0.00 0.00 2.44
397 398 4.202567 TGTTCCCTCTTGGCACTAGATTTT 60.203 41.667 0.00 0.00 0.00 1.82
398 399 3.330701 TGTTCCCTCTTGGCACTAGATTT 59.669 43.478 0.00 0.00 0.00 2.17
399 400 2.912956 TGTTCCCTCTTGGCACTAGATT 59.087 45.455 0.00 0.00 0.00 2.40
400 401 2.237392 GTGTTCCCTCTTGGCACTAGAT 59.763 50.000 0.00 0.00 0.00 1.98
401 402 1.623811 GTGTTCCCTCTTGGCACTAGA 59.376 52.381 0.00 0.00 0.00 2.43
402 403 1.625818 AGTGTTCCCTCTTGGCACTAG 59.374 52.381 0.00 0.00 38.46 2.57
403 404 1.623811 GAGTGTTCCCTCTTGGCACTA 59.376 52.381 0.00 0.00 40.06 2.74
404 405 0.398318 GAGTGTTCCCTCTTGGCACT 59.602 55.000 0.00 0.00 42.29 4.40
405 406 0.108585 TGAGTGTTCCCTCTTGGCAC 59.891 55.000 0.00 0.00 32.50 5.01
406 407 0.397941 CTGAGTGTTCCCTCTTGGCA 59.602 55.000 0.00 0.00 32.50 4.92
407 408 0.957888 GCTGAGTGTTCCCTCTTGGC 60.958 60.000 0.00 0.00 32.50 4.52
408 409 0.689623 AGCTGAGTGTTCCCTCTTGG 59.310 55.000 0.00 0.00 32.50 3.61
409 410 3.196469 TCATAGCTGAGTGTTCCCTCTTG 59.804 47.826 0.00 0.00 32.50 3.02
410 411 3.196685 GTCATAGCTGAGTGTTCCCTCTT 59.803 47.826 0.00 0.00 32.50 2.85
411 412 2.763448 GTCATAGCTGAGTGTTCCCTCT 59.237 50.000 0.00 0.00 32.50 3.69
412 413 2.497675 TGTCATAGCTGAGTGTTCCCTC 59.502 50.000 0.00 0.00 30.18 4.30
413 414 2.499289 CTGTCATAGCTGAGTGTTCCCT 59.501 50.000 0.00 0.00 30.18 4.20
414 415 2.419297 CCTGTCATAGCTGAGTGTTCCC 60.419 54.545 0.00 0.00 30.18 3.97
415 416 2.898705 CCTGTCATAGCTGAGTGTTCC 58.101 52.381 0.00 0.00 30.18 3.62
416 417 2.275318 GCCTGTCATAGCTGAGTGTTC 58.725 52.381 0.00 0.00 30.18 3.18
417 418 1.625315 TGCCTGTCATAGCTGAGTGTT 59.375 47.619 0.00 0.00 30.18 3.32
418 419 1.066573 GTGCCTGTCATAGCTGAGTGT 60.067 52.381 0.00 0.00 30.18 3.55
419 420 1.649664 GTGCCTGTCATAGCTGAGTG 58.350 55.000 0.00 0.00 30.18 3.51
420 421 0.174389 CGTGCCTGTCATAGCTGAGT 59.826 55.000 0.00 0.00 30.18 3.41
421 422 0.529337 CCGTGCCTGTCATAGCTGAG 60.529 60.000 0.00 0.00 30.18 3.35
422 423 1.517361 CCGTGCCTGTCATAGCTGA 59.483 57.895 0.00 0.00 0.00 4.26
423 424 2.176273 GCCGTGCCTGTCATAGCTG 61.176 63.158 0.00 0.00 0.00 4.24
424 425 2.187946 GCCGTGCCTGTCATAGCT 59.812 61.111 0.00 0.00 0.00 3.32
425 426 2.897350 GGCCGTGCCTGTCATAGC 60.897 66.667 7.58 0.00 46.69 2.97
434 435 1.895020 TATATGGGATCGGCCGTGCC 61.895 60.000 27.15 25.40 46.75 5.01
435 436 0.178068 ATATATGGGATCGGCCGTGC 59.822 55.000 27.15 17.90 37.63 5.34
436 437 1.939974 CATATATGGGATCGGCCGTG 58.060 55.000 27.15 7.95 37.63 4.94
437 438 0.178068 GCATATATGGGATCGGCCGT 59.822 55.000 27.15 12.96 37.63 5.68
438 439 0.875908 CGCATATATGGGATCGGCCG 60.876 60.000 22.12 22.12 42.66 6.13
439 440 0.178068 ACGCATATATGGGATCGGCC 59.822 55.000 30.25 0.00 42.66 6.13
440 441 2.024176 AACGCATATATGGGATCGGC 57.976 50.000 30.25 7.68 42.66 5.54
441 442 2.677836 CCAAACGCATATATGGGATCGG 59.322 50.000 30.25 22.14 42.66 4.18
442 443 3.595173 TCCAAACGCATATATGGGATCG 58.405 45.455 30.25 19.20 42.66 3.69
443 444 4.576463 GGATCCAAACGCATATATGGGATC 59.424 45.833 30.25 27.36 45.37 3.36
444 445 4.228210 AGGATCCAAACGCATATATGGGAT 59.772 41.667 30.25 22.78 42.66 3.85
445 446 3.587061 AGGATCCAAACGCATATATGGGA 59.413 43.478 30.25 19.69 42.66 4.37
446 447 3.955471 AGGATCCAAACGCATATATGGG 58.045 45.455 24.00 24.00 45.16 4.00
447 448 5.118990 CCTAGGATCCAAACGCATATATGG 58.881 45.833 15.82 7.17 0.00 2.74
448 449 4.572389 GCCTAGGATCCAAACGCATATATG 59.428 45.833 14.75 8.45 0.00 1.78
449 450 4.680708 CGCCTAGGATCCAAACGCATATAT 60.681 45.833 14.75 0.00 0.00 0.86
450 451 3.368013 CGCCTAGGATCCAAACGCATATA 60.368 47.826 14.75 0.00 0.00 0.86
451 452 2.612972 CGCCTAGGATCCAAACGCATAT 60.613 50.000 14.75 0.00 0.00 1.78
452 453 1.270094 CGCCTAGGATCCAAACGCATA 60.270 52.381 14.75 0.00 0.00 3.14
453 454 0.532862 CGCCTAGGATCCAAACGCAT 60.533 55.000 14.75 0.00 0.00 4.73
454 455 1.153449 CGCCTAGGATCCAAACGCA 60.153 57.895 14.75 0.00 0.00 5.24
455 456 1.887707 CCGCCTAGGATCCAAACGC 60.888 63.158 14.75 8.70 45.00 4.84
456 457 1.227556 CCCGCCTAGGATCCAAACG 60.228 63.158 14.75 11.69 45.00 3.60
457 458 1.148498 CCCCGCCTAGGATCCAAAC 59.852 63.158 14.75 0.00 45.00 2.93
458 459 0.917333 AACCCCGCCTAGGATCCAAA 60.917 55.000 14.75 0.00 45.00 3.28
459 460 1.307517 AACCCCGCCTAGGATCCAA 60.308 57.895 14.75 0.00 45.00 3.53
460 461 2.070039 CAACCCCGCCTAGGATCCA 61.070 63.158 14.75 0.00 45.00 3.41
461 462 2.819284 CCAACCCCGCCTAGGATCC 61.819 68.421 14.75 2.48 45.00 3.36
462 463 0.761702 TACCAACCCCGCCTAGGATC 60.762 60.000 14.75 0.00 45.00 3.36
463 464 0.763223 CTACCAACCCCGCCTAGGAT 60.763 60.000 14.75 0.00 45.00 3.24
464 465 1.382146 CTACCAACCCCGCCTAGGA 60.382 63.158 14.75 0.00 45.00 2.94
465 466 3.103091 GCTACCAACCCCGCCTAGG 62.103 68.421 3.67 3.67 40.63 3.02
466 467 2.311688 CTGCTACCAACCCCGCCTAG 62.312 65.000 0.00 0.00 0.00 3.02
467 468 2.284773 TGCTACCAACCCCGCCTA 60.285 61.111 0.00 0.00 0.00 3.93
468 469 3.717294 CTGCTACCAACCCCGCCT 61.717 66.667 0.00 0.00 0.00 5.52
470 471 4.715523 TGCTGCTACCAACCCCGC 62.716 66.667 0.00 0.00 0.00 6.13
471 472 2.746277 GTGCTGCTACCAACCCCG 60.746 66.667 0.00 0.00 0.00 5.73
472 473 2.361230 GGTGCTGCTACCAACCCC 60.361 66.667 13.89 0.00 40.54 4.95
473 474 2.361230 GGGTGCTGCTACCAACCC 60.361 66.667 18.44 14.37 42.69 4.11
474 475 2.536997 ATCGGGTGCTGCTACCAACC 62.537 60.000 18.44 9.83 42.69 3.77
475 476 1.078426 ATCGGGTGCTGCTACCAAC 60.078 57.895 18.44 1.75 42.69 3.77
476 477 1.220749 GATCGGGTGCTGCTACCAA 59.779 57.895 18.44 9.52 42.69 3.67
477 478 2.900273 GATCGGGTGCTGCTACCA 59.100 61.111 18.44 4.41 42.69 3.25
478 479 2.279517 CGATCGGGTGCTGCTACC 60.280 66.667 7.38 11.32 40.10 3.18
479 480 2.962253 GCGATCGGGTGCTGCTAC 60.962 66.667 18.30 0.00 0.00 3.58
480 481 3.430565 CTGCGATCGGGTGCTGCTA 62.431 63.158 18.30 0.00 0.00 3.49
481 482 4.827087 CTGCGATCGGGTGCTGCT 62.827 66.667 18.30 0.00 0.00 4.24
483 484 4.827087 AGCTGCGATCGGGTGCTG 62.827 66.667 18.30 5.09 32.32 4.41
484 485 4.827087 CAGCTGCGATCGGGTGCT 62.827 66.667 18.30 1.30 39.82 4.40
486 487 4.147449 TCCAGCTGCGATCGGGTG 62.147 66.667 18.30 15.91 44.49 4.61
487 488 3.842923 CTCCAGCTGCGATCGGGT 61.843 66.667 18.30 3.52 0.00 5.28
488 489 3.531207 TCTCCAGCTGCGATCGGG 61.531 66.667 18.30 9.17 0.00 5.14
489 490 2.279120 GTCTCCAGCTGCGATCGG 60.279 66.667 18.30 1.65 0.00 4.18
490 491 2.279120 GGTCTCCAGCTGCGATCG 60.279 66.667 11.69 11.69 0.00 3.69
491 492 1.227205 CTGGTCTCCAGCTGCGATC 60.227 63.158 8.66 7.87 45.13 3.69
492 493 2.898738 CTGGTCTCCAGCTGCGAT 59.101 61.111 8.66 0.00 45.13 4.58
500 501 0.976073 GGTTCGATCCCTGGTCTCCA 60.976 60.000 0.63 0.00 0.00 3.86
501 502 1.687297 GGGTTCGATCCCTGGTCTCC 61.687 65.000 22.23 0.00 43.85 3.71
502 503 1.823976 GGGTTCGATCCCTGGTCTC 59.176 63.158 22.23 0.00 43.85 3.36
503 504 4.051932 GGGTTCGATCCCTGGTCT 57.948 61.111 22.23 0.00 43.85 3.85
509 510 4.957164 GAACCAGGGTTCGATCCC 57.043 61.111 22.05 22.05 43.82 3.85
522 523 3.721087 TGGAGAGAAAATGGGAGAACC 57.279 47.619 0.00 0.00 40.81 3.62
523 524 7.888250 AATAATGGAGAGAAAATGGGAGAAC 57.112 36.000 0.00 0.00 0.00 3.01
524 525 8.899887 AAAATAATGGAGAGAAAATGGGAGAA 57.100 30.769 0.00 0.00 0.00 2.87
525 526 8.899887 AAAAATAATGGAGAGAAAATGGGAGA 57.100 30.769 0.00 0.00 0.00 3.71
534 535 9.037737 CGTACGGATTAAAAATAATGGAGAGAA 57.962 33.333 7.57 0.00 0.00 2.87
535 536 8.415553 TCGTACGGATTAAAAATAATGGAGAGA 58.584 33.333 16.52 0.00 0.00 3.10
536 537 8.583810 TCGTACGGATTAAAAATAATGGAGAG 57.416 34.615 16.52 0.00 0.00 3.20
537 538 7.170320 GCTCGTACGGATTAAAAATAATGGAGA 59.830 37.037 16.52 0.00 0.00 3.71
538 539 7.288672 GCTCGTACGGATTAAAAATAATGGAG 58.711 38.462 16.52 0.00 0.00 3.86
539 540 6.074195 CGCTCGTACGGATTAAAAATAATGGA 60.074 38.462 16.52 0.00 0.00 3.41
540 541 6.068931 CGCTCGTACGGATTAAAAATAATGG 58.931 40.000 16.52 0.00 0.00 3.16
541 542 5.558888 GCGCTCGTACGGATTAAAAATAATG 59.441 40.000 16.52 0.00 0.00 1.90
542 543 5.610982 CGCGCTCGTACGGATTAAAAATAAT 60.611 40.000 16.52 0.00 0.00 1.28
543 544 4.317278 CGCGCTCGTACGGATTAAAAATAA 60.317 41.667 16.52 0.00 0.00 1.40
544 545 3.180189 CGCGCTCGTACGGATTAAAAATA 59.820 43.478 16.52 0.00 0.00 1.40
545 546 2.034339 CGCGCTCGTACGGATTAAAAAT 60.034 45.455 16.52 0.00 0.00 1.82
546 547 1.321148 CGCGCTCGTACGGATTAAAAA 59.679 47.619 16.52 0.00 0.00 1.94
547 548 0.915904 CGCGCTCGTACGGATTAAAA 59.084 50.000 16.52 0.00 0.00 1.52
548 549 1.473857 GCGCGCTCGTACGGATTAAA 61.474 55.000 26.67 0.00 38.14 1.52
549 550 1.940758 GCGCGCTCGTACGGATTAA 60.941 57.895 26.67 0.00 38.14 1.40
550 551 2.352686 GCGCGCTCGTACGGATTA 60.353 61.111 26.67 0.00 38.14 1.75
567 568 1.994885 ATATTGGGCCGGTCCACTGG 61.995 60.000 31.83 0.00 45.30 4.00
568 569 0.819259 CATATTGGGCCGGTCCACTG 60.819 60.000 31.83 21.67 36.38 3.66
569 570 0.986019 TCATATTGGGCCGGTCCACT 60.986 55.000 31.83 26.73 36.38 4.00
570 571 0.818040 GTCATATTGGGCCGGTCCAC 60.818 60.000 31.83 12.08 36.38 4.02
571 572 1.529796 GTCATATTGGGCCGGTCCA 59.470 57.895 27.82 27.82 36.21 4.02
572 573 1.597027 CGTCATATTGGGCCGGTCC 60.597 63.158 21.35 21.35 0.00 4.46
573 574 0.390124 TACGTCATATTGGGCCGGTC 59.610 55.000 1.90 0.00 0.00 4.79
574 575 0.391597 CTACGTCATATTGGGCCGGT 59.608 55.000 1.90 0.00 0.00 5.28
575 576 0.320421 CCTACGTCATATTGGGCCGG 60.320 60.000 0.00 0.00 0.00 6.13
576 577 0.391597 ACCTACGTCATATTGGGCCG 59.608 55.000 0.00 0.00 0.00 6.13
577 578 1.542547 CCACCTACGTCATATTGGGCC 60.543 57.143 0.00 0.00 0.00 5.80
578 579 1.414919 TCCACCTACGTCATATTGGGC 59.585 52.381 0.00 0.00 0.00 5.36
579 580 2.037251 CCTCCACCTACGTCATATTGGG 59.963 54.545 0.00 0.00 0.00 4.12
580 581 2.963101 TCCTCCACCTACGTCATATTGG 59.037 50.000 0.00 0.00 0.00 3.16
581 582 4.665833 TTCCTCCACCTACGTCATATTG 57.334 45.455 0.00 0.00 0.00 1.90
582 583 5.687166 TTTTCCTCCACCTACGTCATATT 57.313 39.130 0.00 0.00 0.00 1.28
583 584 5.189145 AGTTTTTCCTCCACCTACGTCATAT 59.811 40.000 0.00 0.00 0.00 1.78
584 585 4.529377 AGTTTTTCCTCCACCTACGTCATA 59.471 41.667 0.00 0.00 0.00 2.15
585 586 3.326880 AGTTTTTCCTCCACCTACGTCAT 59.673 43.478 0.00 0.00 0.00 3.06
586 587 2.701951 AGTTTTTCCTCCACCTACGTCA 59.298 45.455 0.00 0.00 0.00 4.35
587 588 3.397849 AGTTTTTCCTCCACCTACGTC 57.602 47.619 0.00 0.00 0.00 4.34
588 589 3.135167 TGAAGTTTTTCCTCCACCTACGT 59.865 43.478 0.00 0.00 32.09 3.57
589 590 3.735591 TGAAGTTTTTCCTCCACCTACG 58.264 45.455 0.00 0.00 32.09 3.51
590 591 3.502595 GCTGAAGTTTTTCCTCCACCTAC 59.497 47.826 0.00 0.00 32.09 3.18
591 592 3.751518 GCTGAAGTTTTTCCTCCACCTA 58.248 45.455 0.00 0.00 32.09 3.08
592 593 2.587522 GCTGAAGTTTTTCCTCCACCT 58.412 47.619 0.00 0.00 32.09 4.00
593 594 1.266989 CGCTGAAGTTTTTCCTCCACC 59.733 52.381 0.00 0.00 32.09 4.61
594 595 2.218603 TCGCTGAAGTTTTTCCTCCAC 58.781 47.619 0.00 0.00 32.09 4.02
595 596 2.104111 TCTCGCTGAAGTTTTTCCTCCA 59.896 45.455 0.00 0.00 32.09 3.86
596 597 2.739379 CTCTCGCTGAAGTTTTTCCTCC 59.261 50.000 0.00 0.00 32.09 4.30
597 598 3.394719 ACTCTCGCTGAAGTTTTTCCTC 58.605 45.455 0.00 0.00 32.09 3.71
598 599 3.477210 ACTCTCGCTGAAGTTTTTCCT 57.523 42.857 0.00 0.00 32.09 3.36
599 600 3.058846 GGAACTCTCGCTGAAGTTTTTCC 60.059 47.826 0.00 0.00 32.09 3.13
600 601 3.058846 GGGAACTCTCGCTGAAGTTTTTC 60.059 47.826 0.00 0.00 0.00 2.29
601 602 2.879026 GGGAACTCTCGCTGAAGTTTTT 59.121 45.455 0.00 0.00 0.00 1.94
602 603 2.495084 GGGAACTCTCGCTGAAGTTTT 58.505 47.619 0.00 0.00 0.00 2.43
603 604 1.270893 GGGGAACTCTCGCTGAAGTTT 60.271 52.381 0.00 0.00 34.94 2.66
604 605 0.321996 GGGGAACTCTCGCTGAAGTT 59.678 55.000 0.00 0.00 34.94 2.66
605 606 0.543174 AGGGGAACTCTCGCTGAAGT 60.543 55.000 0.00 0.00 34.94 3.01
606 607 0.174617 GAGGGGAACTCTCGCTGAAG 59.825 60.000 0.00 0.00 43.14 3.02
607 608 2.277858 GAGGGGAACTCTCGCTGAA 58.722 57.895 0.00 0.00 43.14 3.02
608 609 4.019983 GAGGGGAACTCTCGCTGA 57.980 61.111 0.00 0.00 43.14 4.26
615 616 0.035915 GCAAGGTGAGAGGGGAACTC 60.036 60.000 0.00 0.00 46.98 3.01
616 617 0.474660 AGCAAGGTGAGAGGGGAACT 60.475 55.000 0.00 0.00 0.00 3.01
617 618 0.402121 AAGCAAGGTGAGAGGGGAAC 59.598 55.000 0.00 0.00 0.00 3.62
618 619 2.038863 TAAGCAAGGTGAGAGGGGAA 57.961 50.000 0.00 0.00 0.00 3.97
619 620 2.038863 TTAAGCAAGGTGAGAGGGGA 57.961 50.000 0.00 0.00 0.00 4.81
620 621 2.716217 CTTTAAGCAAGGTGAGAGGGG 58.284 52.381 0.00 0.00 0.00 4.79
688 689 0.459489 TGTTTGACTGGGCTTTGTGC 59.541 50.000 0.00 0.00 41.94 4.57
689 690 2.023673 TCTGTTTGACTGGGCTTTGTG 58.976 47.619 0.00 0.00 0.00 3.33
692 693 1.322442 GCTCTGTTTGACTGGGCTTT 58.678 50.000 2.99 0.00 39.98 3.51
723 724 6.127703 CCTGCTTAACTAGTAGAGTAAGTGCA 60.128 42.308 18.39 13.92 38.75 4.57
724 725 6.267070 CCTGCTTAACTAGTAGAGTAAGTGC 58.733 44.000 18.39 11.45 38.75 4.40
725 726 6.095720 AGCCTGCTTAACTAGTAGAGTAAGTG 59.904 42.308 18.39 13.94 38.75 3.16
739 740 0.609131 TTGAGCCCAGCCTGCTTAAC 60.609 55.000 0.00 0.00 39.69 2.01
762 763 3.443588 GCCGTTTGAACTGGGCTT 58.556 55.556 5.78 0.00 42.29 4.35
783 784 3.938334 GGATTGTTCTCTCTGCTTCTTCC 59.062 47.826 0.00 0.00 0.00 3.46
932 954 2.376842 GGGGAGGGGAGGAATGGA 59.623 66.667 0.00 0.00 0.00 3.41
1018 1048 0.618458 TTGATGGGTGGGAGTAGCAC 59.382 55.000 0.00 0.00 0.00 4.40
1019 1049 1.490490 GATTGATGGGTGGGAGTAGCA 59.510 52.381 0.00 0.00 0.00 3.49
1020 1050 1.202818 GGATTGATGGGTGGGAGTAGC 60.203 57.143 0.00 0.00 0.00 3.58
1036 1066 1.925888 GCTGAGGGATGGGTGGATT 59.074 57.895 0.00 0.00 0.00 3.01
1042 1072 2.335092 AATGAGCGCTGAGGGATGGG 62.335 60.000 18.48 0.00 0.00 4.00
1122 1156 4.312052 GCGGTGTTGGAAGCCATA 57.688 55.556 0.00 0.00 31.53 2.74
1268 1308 3.458163 GGTCCTCCGCGTCCATCA 61.458 66.667 4.92 0.00 0.00 3.07
1269 1309 3.148279 AGGTCCTCCGCGTCCATC 61.148 66.667 4.92 0.00 39.05 3.51
1317 1357 4.144727 TCCTCCTCCTCGCCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
1322 1362 2.520741 CCTCCTCCTCCTCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
1323 1363 1.454847 CACCTCCTCCTCCTCCTCG 60.455 68.421 0.00 0.00 0.00 4.63
1527 1570 3.527427 TCATCCGCACCGCTCGAT 61.527 61.111 0.00 0.00 0.00 3.59
1528 1571 4.492160 GTCATCCGCACCGCTCGA 62.492 66.667 0.00 0.00 0.00 4.04
1613 1660 0.806868 CGACTCAGGGTAGTACGCAA 59.193 55.000 18.51 6.27 32.95 4.85
1658 1709 2.159476 ACATGTGCATGATCAAACGCTC 60.159 45.455 17.85 11.53 41.20 5.03
1720 1771 6.500684 ACAAATATGTTTGCAGACACTAGG 57.499 37.500 12.90 4.50 46.84 3.02
1761 1817 5.490139 AATATTTCAGAACCGCACATGAG 57.510 39.130 0.00 0.00 0.00 2.90
1784 1840 2.642807 ACCTTAAAAGCTAGGAGTGGCA 59.357 45.455 7.28 0.00 35.45 4.92
1785 1841 3.271729 GACCTTAAAAGCTAGGAGTGGC 58.728 50.000 7.28 0.00 35.45 5.01
1787 1843 4.553330 TGGACCTTAAAAGCTAGGAGTG 57.447 45.455 7.28 0.00 35.45 3.51
1814 1870 3.823873 TCAAACACATTACACATGGGTCC 59.176 43.478 2.35 0.00 34.01 4.46
1815 1871 5.446143 TTCAAACACATTACACATGGGTC 57.554 39.130 2.35 0.00 34.01 4.46
1816 1872 4.261994 GCTTCAAACACATTACACATGGGT 60.262 41.667 5.60 5.60 37.23 4.51
1817 1873 4.236935 GCTTCAAACACATTACACATGGG 58.763 43.478 0.00 0.00 0.00 4.00
1818 1874 4.236935 GGCTTCAAACACATTACACATGG 58.763 43.478 0.00 0.00 0.00 3.66
1819 1875 4.869215 TGGCTTCAAACACATTACACATG 58.131 39.130 0.00 0.00 0.00 3.21
1820 1876 5.528043 TTGGCTTCAAACACATTACACAT 57.472 34.783 0.00 0.00 0.00 3.21
1821 1877 4.991153 TTGGCTTCAAACACATTACACA 57.009 36.364 0.00 0.00 0.00 3.72
1880 1945 6.073980 CCATAGCATTGCTGTTAAATTGATGC 60.074 38.462 21.31 0.00 40.10 3.91
1884 1949 8.971321 GTAATCCATAGCATTGCTGTTAAATTG 58.029 33.333 21.31 2.58 40.10 2.32
1903 1973 4.141597 TGCATAAGAATCACCGGTAATCCA 60.142 41.667 6.87 0.00 0.00 3.41
1950 2020 6.203530 TCTGCAATCTAAGAAAACACAGACTG 59.796 38.462 0.00 0.00 0.00 3.51
1956 2026 7.141363 ACACAATCTGCAATCTAAGAAAACAC 58.859 34.615 0.00 0.00 0.00 3.32
1963 2033 9.897744 TTTTCTAAACACAATCTGCAATCTAAG 57.102 29.630 0.00 0.00 0.00 2.18
1971 2041 5.915196 GTGGTCTTTTCTAAACACAATCTGC 59.085 40.000 0.00 0.00 0.00 4.26
1978 2048 3.819337 GGGGAGTGGTCTTTTCTAAACAC 59.181 47.826 0.00 0.00 0.00 3.32
1985 2055 4.635699 TTTAGAGGGGAGTGGTCTTTTC 57.364 45.455 0.00 0.00 0.00 2.29
2055 2127 9.856162 TCACCCTATATTATAAAAAGGTTCACC 57.144 33.333 9.18 0.00 0.00 4.02
2184 2259 8.962857 TTTTGTTTTGATTCCTTTTTCTTTGC 57.037 26.923 0.00 0.00 0.00 3.68
2211 2286 4.522722 TTTCAGTGGTTTTGTTTCGGTT 57.477 36.364 0.00 0.00 0.00 4.44
2234 2309 4.573201 TGGTTTTCTTAGTGTTTCGTCTGG 59.427 41.667 0.00 0.00 0.00 3.86
2236 2311 7.307811 GCTTATGGTTTTCTTAGTGTTTCGTCT 60.308 37.037 0.00 0.00 0.00 4.18
2240 2315 8.865590 TTTGCTTATGGTTTTCTTAGTGTTTC 57.134 30.769 0.00 0.00 0.00 2.78
2290 2365 5.119279 CAGTTGATTCGACATCTTTTCTCGT 59.881 40.000 6.81 0.00 0.00 4.18
2291 2366 5.445142 CCAGTTGATTCGACATCTTTTCTCG 60.445 44.000 6.81 0.00 0.00 4.04
2306 2381 1.675641 GCGGTGGAGCCAGTTGATT 60.676 57.895 0.00 0.00 36.97 2.57
2308 2383 3.535629 CTGCGGTGGAGCCAGTTGA 62.536 63.158 0.00 0.00 36.97 3.18
2325 2400 2.358898 GCAAATGGTCGATACAATGCCT 59.641 45.455 16.39 0.00 32.14 4.75
2333 2408 0.813610 CGGGCAGCAAATGGTCGATA 60.814 55.000 0.00 0.00 0.00 2.92
2334 2409 2.114670 CGGGCAGCAAATGGTCGAT 61.115 57.895 0.00 0.00 0.00 3.59
2352 2427 0.835276 AGGTCCTATTTGGTACCCGC 59.165 55.000 10.07 0.00 36.98 6.13
2358 2433 4.683400 CGCTGATAACAGGTCCTATTTGGT 60.683 45.833 1.85 0.00 43.62 3.67
2359 2434 3.809832 CGCTGATAACAGGTCCTATTTGG 59.190 47.826 1.85 0.00 43.62 3.28
2411 2486 4.404073 ACATAGCAAACTTGTTTGAACCCA 59.596 37.500 24.85 8.54 33.95 4.51
2476 2551 1.594293 CATACATCGACGGCCCACC 60.594 63.158 0.00 0.00 0.00 4.61
2477 2552 2.244651 GCATACATCGACGGCCCAC 61.245 63.158 0.00 0.00 0.00 4.61
2484 2559 2.890808 TTCCTCCTGCATACATCGAC 57.109 50.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.