>input_sequence_77706
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---------------------------------------------------------------------ATGCTCCCCGC
CATGGACGTGCTACTCCCACCCATCAATCCACCCATCCCTCAGCGCT----CATTGCTAGCCAGCCACCCCCATTACTCT
CCACCTAGCTTAACAACCACCGCCGCCGCCGCTGCTATGGCTTCCAACACCG---CCAACGCGGCCTCCGAGGTGAGCAA
CGCCATCACCGACCTCAACGACCACCTCGCCACCGCCCTCGGAGCCGGCGACGAGGCCG---GCAAGACGACCGTCATCA
CGCTGGCGGGGGAGAACAACGGCGCCGTGATGGACGCGGAGGACCTGGTCGTTGTCGAGGCCGGCGGCGAGGGGGAGGAG
GGCGAG---GAGGAGGAGGAGGTGCACGTGGCCGCCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCT
CGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTGCACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACG
GCGACGAGATCTTCGAGGACGGTGAGGTGGCCAAGTGA------------------------------------------
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>chr2D_1_TraesCS2D01G037200
AAATGTAGAGTGGAAACGAAAACAAACATAAGAACAAGCAAAAAACGGAGAAGAAAAAAAACAAAACAAAAAATGGAGAA
GAAACAAAATGCAAGAAAGAATGAAAAAATGGAGAAGAAAAATAAAAAATAAAAAAGAACAGGAAAAAAAACCTGGATCG
AATAGCCTCAAGTAGGACGCGCCCTACAACTTACCACAAGACGGACCCTAGGTGGAGTTTTTTTTAGCATAATAACTTTA
TTCATCAAATGATAGCCAGATTGTTTACATATTGATGAAGAATAAAGTCAGAGATGATTTCCCACACTTCAGACTTGCTA
GAATTAATACAATGTTTAGCTAATGCATATGCCACCGCATTGGCCTCTCAGCTGCAATGATCAAAGATAATGCTAGCAAA
ATCTAGTGCCAAGAGGGAACACTCAGCTATGACAGGCACGGCCGATCCCATATATGCGTTTGGATCCTAGGCGGGGTTGG
TAGCAGCACCCGATCGCAGCTGGAGACCAGGGATCGAACCCTGGTTCTCCCATTTTCTCTCCATTATTTTTAATCCGTAC
GAGCGCGCCAGTGGACCGGCCCAATATGACGTAGGTGGAGGAAAAACTTCAGCGAGAGTTCCCCTCTCACCTTGCTTAAA
GCGACAAATAGTCGCCACGTCGCCGGACAGCGCCCACCTGAGCAGATCGCACAAAGCCCAGTCAAACAGAGCTGGGCTGG
GCTTGCACTTACTCTACTAGTTAAGCAGGCTGGGCTCAACTGAAGCCCAGTTCAAACGGCTGCGGAAGAAGCAGAGAGAA
CAATCCTTTGCTTCGGTCCGAAGTCACTTCACGAGCGGCGGCATGTCCATCGATCTGAACTCGGCCG-------------
--AGAAAACAATCCATGGATCCTTT------GCCCGCGTCCTCAAGCCTCGAATCGCTTGCAACTCCTGCCATTCCATTC
C-----TCCCCTCCCCACGCACGCAAGCTACCCGCCTCCCTCCTCCC---CTGCCCTCCTCTCCTATATATGCTCCCCGC
CATGGACGTGCTACTCCCACCCATCAATCCACCCATCCCTCAGCGCT----CATTGCTAGCCAGCCACCCCCATTACTCT
CCACCTAGCTTAACAACCACCGCCGCCGCCGCTGCTATGGCTTCCAACACCG---CCAACGCGGCCTCCGAGGTGAGCAA
CGCCATCACCGACCTCAACGACCACCTCGCCACCGCCCTCGGAGCCGGCGACGAGGCCG---GCAAGACGACCGTCATCA
CGCTGGCGGGGGAGAACAACGGCGCCGTGATGGACGCGGAGGACCTGGTCGTTGTCGAGGCCGGCGGCGAGGGGGAGGAG
GGCGAG---GAGGAGGAGGAGGTGCACGTGGCCGCCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCT
CGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTGCACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACG
GCGACGAGATCTTCGAGGACGGTGAGGTGGCCAAGTGAGGCCATCTATCATCGAGCGGTGCGGATGACG----ATGTTCT
GCTTCTACTCAATTTGGTCGGTCGGTCGGTCGGTGGCTTCTTCGGGCCGTCTGGAGATGTTGCGTACTACCCTGAGTCGT
TTGGAGTTTATTTAATTTCTAT----ATGAGCGTTTGATCATGCACATGTATGCATATGTTTATGTATTGCATTTATATG
TATACGTCCTCCTAGTGTCTG-----CAAACATATTTGTATGTTATGTAAGTTTGCCTCATGTGCGGTTCTGAAATATTT
GCCACTCCTAGCTTTTAAGGTCCATGACCGGACCCATGTGTAATGTGTTTGAAGCCAATCTGTTTCAGGCTCACTTTT--
-------TATGTAACTGCTTTCGAGCATCAATTTAACAGCAATG-----CTATGGATTACCGGTGATTCTTATGCAATTA
GTTTTATAGGCTGACATGACAGTCTGTGTTTTCTTAGATTGCAGATTGTGTTTAGAAAAGACCACTCCCCTCTAAATACG
TTGAATTT-TTTTTAATACACGATGAACATTTT-TTTATAATGCACGGTGAACCTTTTTATAATATAGGGTG--AACATC
TTCTTAATATATGATGAACATTTTTGTAATACATGGTGAACTTTTTGTATAATACACAAAAAAAGAGAAGGAAAAAGAAA
AATG-AAAAAGAAAAACAGCAAAGAAAAAGGAATCAAAACAAAAAAACCGAAACAAAACCACTGAAAACCAGACGAAACA
CTAAGAAAACCATAAGCAAATCCCTACAGAAGAAAGAAGATGCAACGAGAAAAGATGTCGAATCAACTGGCTCCACCGCA
GGCATTGTATCGACCATTTGCTGCCCGCGGGTACCAAATAGGACCTGTTATCAGCGACTTCCTAGTCACTACTTCTACAA
GCTCTTGGGTTCAAACAAGTTTGCTATGTTAAGACAGAGGCCTGGAGAGACGACAACGAGTTTTCCTCACGGTGGGCCGT
CGATGTATGCAGGAGGAAAAAAACTTTGAC
>chr2A_622
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-------------------------------------------------------------CCCTCTCACCTCGCTTAAA
GTGACAAATAGTCGCCGCGGCGCCGGAGAGCGCCCACCTGAGCAGATCTGACGAAGCCCGGTCAAACAGAGCTGGGCTGG
GCTACTACTTACTCTACTAATTAAGCAGGCTGGGCTCAACTGGAGCCCAGTTCAAACAGCTGCAGAAGAAGCAGAGGGAA
CAATCCTTTGCTTCGGTCCGAAGTCACTTGACGAGTGGCGGCATGTCCATCGATCTGAACTCTGAACTCACCTGACCGAC
CAAGAAAACAATCCATGGATCCTTT------GCCCGCGTCCTCAAGCCTCGAATCGCTTGCAACTCCTGCCATGCCATTC
CATACCTCCCCTCCCCACGCACCCAAGCTACCCGCCCCCCTCCTCCTCTGCTCCTCTCCTCTGCTATATATTCATCGCAC
CATGGACACCCTACTCCCACCCATCCATCCATCCATCGATCCATCAGCCTCCATTGCTAGCCAGCCACCCCCATTACTCT
CCACCTAGCT---CAACCACCACCGCCGCCGCTGCCATGGCTTCCAACAACAGCACCAACGCGGCCTCCGAGGTGAGCAA
CGCCATCACCGACCTCAACGACCACCTCGCCACCGCCCTCGGCACCGGCGACGAG---G---GCAAGACCACCGTCATCA
CGCTGGCGGGGGAGAACAACGGCGCGGCCATGGACGCGGAGGACCTGGTCGTCGTCGAGGCCGGCGGCGAGGGGGACGAG
GAGGAGGGCGAGGACGAGGAGGTGCACGTGGCCGCCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCT
CGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTCCACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACG
GCGACGAGATCTTCGAGGACGGCGAGGTGGCCAAGTGAGGCCATCTATC---GAGCGGTGCGGATGACG----ATGTTCT
GCTTCTACTCAATTTGGTCGGTCGGTCGGTCGGTGGCTTCTTCGGGCCGTCTGGAGATGCTGCGTACTACCATGAGTCGT
TTGGAGTTTATTTAATTTCTAT----ATAAGCGTTTGATCATGCACATGTATGCATATGTTTATGTATTGCATTTATATG
TATACGTGCT---AGTGGGTGTCTGAAAAACATATTTGTATGTTATGTAAGTTTGCTTCATGTGCGGTTCTGAAATATTC
ACTACTCCTAGCTTTTAAGATCCATGACCCAC-----GTGTAATGTGTTTGAAGCCAATGTGTTTCAGGCTCACTATTTC
CCCGTAATATATAACTGCTA-CGACCAATAATTTAACAGAATGCTACGACTACAGATTACGGATTATTCTTGGAT--TTA
GTTTTATAGGCTGACA----------------------------------------------------------------
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>chr2B_694
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-----------------------------------------------------AAGCCCAGTCAAACGGAGCTGG-CTGG
GCTACTGCTTACTCCACTAATTAAGCAGGCCGGGCTCAACTGGAGCCCAGTTCAAACGGCGGCAGAAGAAGCGGAGAGAA
CAATCCTTTGCTTCGGTCCGAAGTCACTTGACGAGCGGCGGCGTGTCCATCGATCTGAACTCGGCCG-------------
--AGAAAACAATCCATGGATCCTTTTCCTTTGCCCGCATCCTCAAGCCTCGAATCGCTCGCAACCTCTGT-----CATTC
CATTCCTCCCCTCCTCACGCACGCAAGCTACCCGCCTCCCTCCTCCC---CTGCCCTCCTCTGCTATATATGCTCCCCGC
CATGGACACCCTACTCCCACCCATCCATCCATC----GATCCATCAGCCTCCATTGCTAGCCAGCCACCCCCATTACTCT
CCACCTAGCCCAACAACAACCACCGCCGCCGCTGCCATGGCTTCCAACAACACCACCAACGCGGCCTCCGAGGTGAGCAA
CGCCATCACCGACCTCAACGACCACCTGGCCACCGCCCTCGGCGCCGGCGACGAG---GCCGGCAAGACCACCGTCATCA
CGCTGGCGGGGGAGAACAACGGCGCGGCCATGGACGCGGAGGACCTGGTCGTCGTCGAGGCCGGCGGCGAGGGGGACGAG
GAGGAAGGCGAGGACGAGGAGGTGCACGTGGCCGCCTACACCAACAGCAACTACCAGGCGGTGAACAACTCGGTGCTCCT
CGCCGGCAGCTGCGCCGTCAGGGACCCCGGCGTCCACGTCGTCATCGTGGAGCACGTCGACGACATCCGCGACTGCGACG
GCGACGAGATCTTCGAGGACGGTGAGGTGGCCAAGTGAGCCAATCTATC---GAGCGGTGCGGATGACGATGCATGTTCT
GCTTCTACTCAATTTGGTCGGC----CGATCGGTGGCTTCTTCAGGCCGTTTGGAGATGCTGCGTACTACCCTGAGTCGT
TTGGAGTTTATTTACTTTCTATCTACATAAGCGTTTGATCATGCACATGTATGCATGTGTTTATGTATTGCATTTATATG
TATACGTCCT---AGTGTCTG-----AAAACATATTTGTATGTTATGTAAGTTTGCTTCATGTGCGGTTCTGAAATATTC
ACTGCTCCTAGCTTTTAAGGTCACGAT-CCAC-----GTGGAATGTGTTTGAAGCCAATCTGTTTCAGGCTCACTTTT--
-------TATGTAACTGCTTTCGACCATTAATTTAACAGCAATG-----CTACGGATTGCCGGTGATTCTTATGCAATTA
GTTTTACAGGCTGACATGAAAGTCTTTGTTTTTTTAGATTACAGATTATGTTTACAAAAGACCACTCCCCTCTAAATACG
TTGAATTTTTTTTTAATACAGGATGAACATTTTCTTTATAATGCACTGTGAACCTTTTTACTATATATAGAGTTAACATC
TTCTTAATATATGATGAACATTTTTGTAATACGTGGTGAACTTTTTGTATAATACACAAAAAAAGAGAAGAAAAAACTAA
AATGAAAAAAGAAAAACAACAAAGAAAAAGAAATCAAAACAAAAA-ACCGAAACAAAACCACTGAAAATCGGACAAAACA
CTAAGAAAACCATAAGCAAATCCCTACAGAAGAAAGAAGATGCAGTGAGAAAAGATGTCGGACCAACTGGCTCCACCGCC
GGCATTGCGTCGACTACTTGCTGCCCACGGGTGGCAAATAGGACCTGTTATCAGTGACTTCCTAGTCACTACTTCTACAA
GCTCTCGGGTTCAAACAAGTTTGCTATGTTAAGACAGAGGCCTGGAGAGACGACAACGAGTTTTCCTCACAATGGGCCCT
CGATGGATGCAGGAGGAACAAAACTTCGAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------
-S--------------S--S-------S--------------------SS--S---------------------------
---SSS-------------S----------------------S--------------------S----------------
-----------------------------S--------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------S-----------------
-------SSS---------------S-----S-----SS--SSSSSS---------------------------------
----------S----------S-------------S-------------S-S----------------------------
------------------------------------------S------------SSS-----------S----------
-------------------------S-SS-----------------------S-----------------------S---
-SS-----------S-----------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------SSS----------------------------
-----------------------------------------------------------S--------------------
----------------------------S---------------------------------------------------
----------SSS-------------S-----------------------------S----------------------S
S-S--------------------------SSSSSSSS-------------------------------------------
------------------------S---S-----------------------S---------------------------
-------------------S-----S------S-------S------S------S-------------------------
--------------------S-------------------------S-------------SS-----SS-S---------
--------------------------------S-------------------------------------S-----SS--
------------------S-----------S--------------S----------------------S-S---S-----
--------------------------------------------SS--------------S-S----------------S
-------SS-----S-S---------S-----SS--------------------S-------------------------
-----S----------------------------------------------------------------SS------S-
-----S------------S-------S---
>forward_378
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--------------------------------------ATTGGCCTCTCAGCTGCAAT----------------------
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>reverse_1660
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-----------------------------------------------------------TTGCGTACTACCCTGAGTCG-
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